Citrus Sinensis ID: 004581

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740----
Protein Sequence
MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT
Secondary Structure (PSIPRED)
ccccccEEEEEEccccEEEEEccccEEEEEEEEcccEEEEEEEcccccEEEEEEcccccccccEEcccccccccccccccccccccccEEEEEEccccEEEEEEccccEEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccccccEEEEEEEEccccEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEccccEEEccccccEEEEccccccEEEEEEEEEcccccEEEEEcccccEEEEEccccEEEcccccccccEEEccccEEEEEEEcccEEEEEEcccEEEEEEEEEccEEEEcccccccccEEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccccccEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEcccccccHHHHccccccccccccccccEEEEEEcccccccEEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEccccEEEEEEcHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccccccEEEEEEEccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEccccEcccccEEccccccEEEEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEccccEEccccccccEEcccccccEEEEEEcccccEEEEcccEEEEEEEcccccccEccccccccccccEEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEEcccccEHHHccccccccHHHHccccccEEEEEEccccccEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHcccccEEEEcccccEEEEEcccccEEEEEEccHHHHHHHccccccEEcccc
Coil and Loop (DISEMBL)
mglpggrlfsssidgsvsewdlydLKQKIVLQSIDFSIWQmavapsnsslmhavtnsdhigngylndksndsddhetsesendsdsdelheqsVVEDRRVALACddgcvriyritdsdeliyhrslprvsgrVLSVtwsadgnmlysgssdgyirswdaklGYEIYRITVglgglgsgpeLCIWSLLslrcgtlvsadstgsvqfwdsrhgtllqahsfhkgdvnalaaapshnrvfstgsdgQVILYKAScesigpndglssseVIKKWIYVGSVRAHTHDVRALTvavpisredplpedkvkrsrgrekpidfsyhkwahlgvpmlisagddtKLFAYCANeftkfspheicpapqrvpihlvhNTIFSHTSLLLVQYSCRLDILSVRLennvesrsssgghastSLLVQVKSKASRKIICSTisnsgmlfaysdhvkpslfelkkgkvgqgewiinkrqlprklqFAHSMIFsydssqliiaghdrriyvvdvsssellhtftpcreehdreiqpseppitkmftssdgQWLAAVNCFGDVYIFNLEIQRQHWFISRlegasvtaagfppqnnnvliittssnqvyvFDVEAKQLGEWSMQHTFvlprryqefpgeviglsfspspssssviIYSARAMCVidfgrpvdpddetdmvsgqgSALRKIASTPINGRLKRKLRDCqtesnklhgrknfeffafrdpvlfighlskssmliidkpwlevvktfdapvhrhiygt
Flexible Loop (DISEMBL)
mglpggrlfsssidgsvSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETsesendsdsdelheQSVVEDRRVALACDDGCVRIYritdsdeliyhrslprvsgRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALtvavpisredplpedkvkrsrgrekpidfsyhkwaHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVEsrsssgghastslLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHtftpcreehdreiqpseppITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETdmvsgqgsalrkiastpingrlkrklRDCQTesnklhgrknfefFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTfdapvhrhiygt
Low Complexity Region (SEG)
MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKsndsddhetsesendsdsdelheQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVEsrsssgghastsLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLsfspspssssVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT
Disordered region (IsUnstruct)
**************GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAP***************************************************DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI********************IDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLE*****************LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPC******************FTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSF*******SVIIYSARAMCVIDFGR*******************************************LHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIY**
Disordered Region (DISOPRED)
MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES**********EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPV***********************************************FEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT
Disordered Region (DISEMBL)
MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKS************************VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN************STSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP*********QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDD**********ALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT
Disordered Region (DISPRO)
****GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMV*********************************HGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	744	2.2.26 [Sep-21-2011]
Q969X6	686	Cirhin OS=Homo sapiens GN	yes	no	0.805	0.873	0.244	2e-45
Q8R2N2	686	Cirhin OS=Mus musculus GN	yes	no	0.790	0.857	0.247	8e-45
O60161	710	U3 small nucleolar RNA-as	yes	no	0.758	0.794	0.237	5e-36
Q06679	776	U3 small nucleolar RNA-as	yes	no	0.638	0.612	0.226	5e-20
Q00808	1356	Vegetative incompatibilit	no	no	0.194	0.106	0.318	4e-08
P49695	742	Probable serine/threonine	no	no	0.181	0.181	0.299	7e-06
Q6NLV4	647	Flowering time control pr	no	no	0.302	0.347	0.247	8e-06
D3ZW91	477	POC1 centriolar protein h	no	no	0.188	0.293	0.288	1e-05
O76734	579	General transcriptional c	no	no	0.146	0.188	0.306	2e-05
P87141	1313	WD repeat-containing prot	no	no	0.182	0.103	0.323	2e-05

>sp|Q969X6|CIR1A_HUMAN Cirhin OS=Homo sapiens GN=CIRH1A PE=1 SV=1

 Score =  184 bits (468), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 185/757 (24%), Positives = 312/757 (41%), Gaps = 158/757 (20%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
           G RLFS+ ++G + E+DL  L  K  + +    IW MA +PS S L+             
Sbjct: 71  GQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLL------------- 117

Query: 65  LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHR 124
                                                + C+DG V++++IT  D++ + R
Sbjct: 118 -------------------------------------VGCEDGSVKLFQIT-PDKIQFER 139

Query: 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI- 183
           +  R   R+LS++W   G  + +GS D YI  +D K G  ++++ V    +G     CI 
Sbjct: 140 NFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVHKMIVDRQYMGVSKRKCIV 198

Query: 184 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
           W +  L  GT++S DS G VQFWDS  GTL+++H     DV ++A A   +      ++G
Sbjct: 199 WGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEG 258

Query: 244 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 303
            V  ++     + P   ++S+   K+W+     + HTHDVR +                 
Sbjct: 259 TVFHFQ-----LVP---VTSNSSEKQWVRTKPFQHHTHDVRTV----------------- 293

Query: 304 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH 363
                            AH     LIS G DT L      E  +   ++        P H
Sbjct: 294 -----------------AH-SPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFP-H 334

Query: 364 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGG---HASTSLLVQVKSKASRK 420
               +      LLL Q++  L++   RL + V +  +        +   L+ +K+K    
Sbjct: 335 RCLISCSKKRQLLLFQFAHHLELW--RLGSTVATGKNGDTLPLSKNADHLLHLKTKGPEN 392

Query: 421 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR--QLPRKLQFAHSMIFSYD 478
           IICS IS  G   AYS   +  L+ L      + + I  KR  ++P  L+ A  ++FS D
Sbjct: 393 IICSCISPCGSWIAYSTVSRFFLYRLNY----EHDNISLKRVSKMPAFLRSALQILFSED 448

Query: 479 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMF---TSSDGQWL 535
           S++L +A +   +++V +S             +H    QP    +  M     S DG WL
Sbjct: 449 STKLFVASNQGALHIVQLSGGSF---------KHLHAFQPQSGTVEAMCLLAVSPDGNWL 499

Query: 536 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 595
           AA      V+++N++  + H  +       VTA    P  NN L+I  S  QV+ + +  
Sbjct: 500 AASGTSAGVHVYNVKQLKLHCTVPAY-NFPVTAMAIAPNTNN-LVIAHSDQQVFEYSIPD 557

Query: 596 KQLGEWSMQ------HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR 649
           KQ  +WS        H   L R        +  +SF P      ++++ A   C+ID   
Sbjct: 558 KQYTDWSRTVQKQGFHHLWLQRD-----TPITHISFHPK-RPMHILLHDAYMFCIIDKSL 611

Query: 650 PVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRK--NFEFFAFRDP 707
           P+ P+D+T + +            P N            ES+ +  R    F+      P
Sbjct: 612 PL-PNDKTLLYN---------PFPPTN------------ESDVIRRRTAHAFKISKIYKP 649

Query: 708 VLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT 744
           +LF+  L + +++ +++P  +++     P+ +  +GT
Sbjct: 650 LLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKFGT 686

Homo sapiens (taxid: 9606)

>sp|Q8R2N2|CIR1A_MOUSE Cirhin OS=Mus musculus GN=Cirh1a PE=2 SV=3

 Score =  182 bits (462), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 190/768 (24%), Positives = 309/768 (40%), Gaps = 180/768 (23%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
           G RLFS+ ++G + E+DL  L  K  L +    IW M  +PS S L+             
Sbjct: 71  GQRLFSAGLNGEILEYDLQALNIKYTLDAFGGPIWSMTASPSGSQLL------------- 117

Query: 65  LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHR 124
                                                + C+DG V+++ +T  +++ + R
Sbjct: 118 -------------------------------------VGCEDGSVKLFEVT-PEKIQFAR 139

Query: 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI- 183
           +  R   R+LS+ W   G  + +GS D YI  +D K G  I ++ +    LG     CI 
Sbjct: 140 NFDRQKSRILSLCWHPAGTHVAAGSLD-YISVFDVKSGSIIRKMVLDRQHLGVTKSRCIV 198

Query: 184 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG 243
           W +  L  GT++S DS G VQ WDS  GTL+++H     DV ++A A   +      ++G
Sbjct: 199 WGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSHLVANADVQSIAVADQEDSFVVGTAEG 258

Query: 244 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKV 303
            V  ++           ++S+   K+W+     + HTHDVRA+                 
Sbjct: 259 TVFHFQLV--------SMTSNSSEKQWVRTKPFQHHTHDVRAV----------------- 293

Query: 304 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIH 363
                            AH     LIS G DT L               I P  +RV + 
Sbjct: 294 -----------------AH-SPTALISGGTDTHLV--------------IRPLMERVEVK 321

Query: 364 ----LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE-----SRSSSGGHAST------- 407
                +    F H    L+  S R  +L  +  +++E     S S++G +  T       
Sbjct: 322 NYDAALRKITFPHRR--LISCSKRRQLLLFQFAHHLELWRLGSTSATGKNGDTLPLSKNA 379

Query: 408 SLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL 467
             L+ +K+K    IICS +S  G   AYS   +  L+ LK  +       ++K  LP  L
Sbjct: 380 DHLLHLKTKGPENIICSCVSPCGSWIAYSTASRFFLYRLKYERDNISLQRVSK--LPSFL 437

Query: 468 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITK 525
           + A  ++FS DS++L++A +   +++V +S      LHTF           QP    +  
Sbjct: 438 RSALHILFSEDSTKLLVASNQGSLHIVHLSEGSFKHLHTF-----------QPQSGTVEA 486

Query: 526 MF---TSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT 582
           M     S DG WLAA      V++++L   + H  +       VTA    P  NN L+I 
Sbjct: 487 MCLLAVSPDGNWLAASGTSAGVHVYDLHHLKLHCTVPAY-NFPVTALAIAPNTNN-LVIA 544

Query: 583 TSSNQVYVFDVEAKQLGEWSMQ------HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVII 636
            S  QV+ F +  KQ  EWS        H   L R        +  +SF P      +++
Sbjct: 545 HSDQQVFEFSIPEKQYTEWSRSLQKQGFHQLWLQRD-----TPITHISFHPK-RPMHILL 598

Query: 637 YSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGR 696
           + A   C+ID   P+ P+++T + +            P        LR         HG 
Sbjct: 599 HDAYMFCIIDKSLPL-PNEKTVLYN----------PLPPKNESDVFLR------RTTHG- 640

Query: 697 KNFEFFAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT 744
             F+      P+LF+  L + +++ +++P  +++     P+ +  +GT
Sbjct: 641 --FKMSKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKFGT 686

Mus musculus (taxid: 10090)

>sp|O60161|UTP4_SCHPO U3 small nucleolar RNA-associated protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp4 PE=3 SV=1

 Score =  153 bits (386), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 160/675 (23%), Positives = 284/675 (42%), Gaps = 111/675 (16%)

Query: 96  EDRRVALACDDGCVRIYRITDSDELI-YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYI 154
           E + +A+ CDDG   ++ I+    +I + R L R + R+LS+ +    + L  G +DG I
Sbjct: 121 ETKTLAVGCDDGSCVLFDISGGPGVIEFKRVLMRQTSRILSLDFQTK-DHLVGGCADGVI 179

Query: 155 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLL 214
           + WD           + +     G    IW++ SLR GT+VSADS+G+V+FW+ +  TL 
Sbjct: 180 KVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLS 239

Query: 215 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG 274
           Q+   H  D   L  + + + VFS+G D + I Y             S     ++W+   
Sbjct: 240 QSFKLHLADALCLGVSANGDMVFSSGIDRKTIQY-------------SREGGKREWVSNS 286

Query: 275 SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD 334
             R H+HDVR + V                      K +D            +LIS G D
Sbjct: 287 FRRFHSHDVRCMAVF-------------------ECKSLD------------VLISGGMD 315

Query: 335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENN 394
             L      +F + +   I   PQR                + V    RL      L N+
Sbjct: 316 MMLAVIPVRQFNRKNHRMISAVPQR--------------PRMAVAPKARL----FMLWND 357

Query: 395 VESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQG 454
            E      G      L+++       I  + IS  G L A S  ++  L++L+       
Sbjct: 358 HEVLLWRIGSPGYRFLLKIVLADEENISHAAISPDGELIAISSVLRTKLYQLQYSDENVK 417

Query: 455 EWIINKRQLPRKLQFAHSMI-FSYDSSQLIIAGHDRRIYVVDVS--SSELLHTFTPCREE 511
              +    L        S++ F+ D ++LI+  +D  I+++++S   S  L  F    + 
Sbjct: 418 VETVEDSFLS---NIGASLLSFTVDKNKLILVSNDSEIFLIELSRLDSRQLEVF-ELSQP 473

Query: 512 HDREIQPSEPP--------ITKMFTSSDGQWLAAVNCFGDVYIFNL------EIQRQHWF 557
             ++I P +          I  +  SSDG + A  +  G+++ ++L      E+ R + +
Sbjct: 474 TSKKIAPRQRSNVSSMCDGICSIAVSSDGDYFAVADTVGNIFCYSLSNLTYSELPRVNTY 533

Query: 558 ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFP 617
                   V A  F P     L + T+ NQVY FDV++++L EWS  ++  +P+ + +  
Sbjct: 534 --------VRAMAFRPDVRGRLAVATAGNQVYEFDVQSRKLSEWSKNNSTNMPKEFSQLL 585

Query: 618 GEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKI-ASTPIN 676
            +  G +F  S   S   I+SA  +   D            + + + +  RKI  +  ++
Sbjct: 586 DKAFG-AFFDSKHPSRFWIWSANWVSFFDL--------NLQLPAPRAAGKRKIEMNATVD 636

Query: 677 GRLK-RKLRDCQTESNKLHGRKNFEFF----AFRDPVLFIGHLSKSSMLIIDKPWLEVV- 730
           G L  +KL +  +     +G  +   F     +R P+L +G +  S +L++++P  +++ 
Sbjct: 637 GNLNDKKLANANSNGISNYGTGDSRCFWITHKYR-PMLLVGSVGNSELLVVERPIADMLM 695

Query: 731 -KTFDAPVHRHIYGT 744
            K+  A  + H +G+
Sbjct: 696 SKSMPASFYEHKFGS 710

Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06679|UTP4_YEAST U3 small nucleolar RNA-associated protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP4 PE=1 SV=1

 Score =  100 bits (249), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 131/579 (22%), Positives = 241/579 (41%), Gaps = 104/579 (17%)

Query: 99  RVALACDDGCVRIYRITDSDELIYHRS-LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157
           ++++ CD+G V +  I+    ++ H + L R   RVL++ W  D + +  G SDG IR W
Sbjct: 155 KLSVGCDNGTVVLIDISGGPGVLEHDTILMRQEARVLTLAWKKD-DFVIGGCSDGRIRIW 213

Query: 158 -----DAKLGYEIYRITVGLGGLGSGPELCIWSLLSL-RCGTLVSADSTGSVQFWDSRHG 211
                D  +G  ++ + V      S     +WS++ L R   + S DSTGS++FWD +  
Sbjct: 214 SAQKNDENMGRLLHTMKVDKAKKEST---LVWSVIYLPRTDQIASGDSTGSIKFWDFQFA 270

Query: 212 TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI 271
           TL Q+   H  DV  L     +N VFS G D ++  +  +      N+         +W+
Sbjct: 271 TLNQSFKAHDADVLCLTTDTDNNYVFSAGVDRKIFQFSQNTNKSQKNN---------RWV 321

Query: 272 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA 331
              +   H +D+RA+                                 +   G   L+S 
Sbjct: 322 NSSNRLLHGNDIRAICA-------------------------------YQSKGADFLVSG 350

Query: 332 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-CRLDILSVR 390
           G +  L     N  T FS       P   P     N + +    L+V +S   + I ++ 
Sbjct: 351 GVEKTL---VINSLTSFSNGNYRKMPTVEPYS--KNVLVNKEQRLVVSWSESTVKIWTMG 405

Query: 391 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGK 450
            +++ E         +  L+ ++  K  + I   ++S  G +          +F L+   
Sbjct: 406 TDSSTEQ--------NYKLVCKLTLKDDQNISTCSLSPDGQVLVVGRPSTTKVFHLQ--P 455

Query: 451 VGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE 510
           VG  +  + K      L+ +  ++   D+S+++I   +  +++VD+ S E         +
Sbjct: 456 VG-NKLKVTKLDNDLLLRTSTKLVKFIDNSKIVICSCEDDVFIVDLESEE---------D 505

Query: 511 EHDREIQPSE----------PPITKMFTSSDGQWLAAVN--CFGDVYIFNLEIQRQHWFI 558
           E  +E++  E          P I ++      Q +A ++  C G V I +L+  R    +
Sbjct: 506 EKPQEVELLEVTSTKSSIKVPYINRINHLEVDQNIAVISRGC-GVVDILDLK-ARISKPL 563

Query: 559 SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV----EAKQ------LGEWSMQHTFV 608
           +RL    +TA        +V++I T+ N++Y F++    EA+       L +WS  +T  
Sbjct: 564 ARLNNF-ITAVHINTSRKSVVVI-TADNKIYEFNMNLNSEAENEDSESVLTQWSKNNTDN 621

Query: 609 LPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF 647
           LP+ ++      +G+ FS   +SS +  + A  +  IDF
Sbjct: 622 LPKEWKTLKENCVGI-FSDIENSSRLWFWGATWISRIDF 659

Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 96   EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
            + +RVA   DD  ++I+   D+      ++L    G V SV +S DG  + SGS D  I+
Sbjct: 1020 DGQRVASGSDDKTIKIW---DTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIK 1076

Query: 156  SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST-GSVQFWDSRHGTLL 214
             WDA  G      T  L G G      +WS+     G  V++ S  G+++ WD+  GT  
Sbjct: 1077 IWDAVSG----TCTQTLEGHGDS----VWSVAFSPDGQRVASGSIDGTIKIWDAASGTCT 1128

Query: 215  QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251
            Q    H G V+++A +P   RV S   DG + ++ A+
Sbjct: 1129 QTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAA 1165

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 159
           VA    DG  R++ +    E   H  L   +  V +V +S DG+M+ SGS DG IR WD 
Sbjct: 558 VASGSRDGTARLWNVATGTE---HAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDV 614

Query: 160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 219
             G E   +          P   + SL     G+++   S  +V  WD   G  L     
Sbjct: 615 ATGKERDVL--------QAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEALHTFEG 666

Query: 220 HKGDVNALAAAPSHNRVFSTGSDGQVI 246
           H   V A+A +P    + ++GSD + I
Sbjct: 667 HTDWVRAVAFSPD-GALLASGSDDRTI 692

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6NLV4|FY_ARATH Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 21/246 (8%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
           G RL + S  G  + W+      +++LQ+ D  I  M V   N + M  V+  D     Y
Sbjct: 135 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQPIRSM-VWSHNENYM--VSGDDGGTLKY 191

Query: 65  LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHR 124
             +  N+   ++T+  E+  D           D +     DD  V+++  T   + +   
Sbjct: 192 WQNNMNNVKANKTAHKESIRDLS-----FCKTDLKFCSCSDDTTVKVWDFT---KCVDES 243

Query: 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184
           SL      V SV W    ++L SG  D  ++ WD + G E+  +         G +  + 
Sbjct: 244 SLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSL--------HGHKNIVL 295

Query: 185 SLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG-SD 242
           S+   + G  L++A     ++ +D R    LQ+   H  DV +LA  P H   F +G SD
Sbjct: 296 SVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSD 355

Query: 243 GQVILY 248
           G +  +
Sbjct: 356 GSICHW 361

Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3' end-processing factor. Required for growth and development in plants.

Arabidopsis thaliana (taxid: 3702)

>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b PE=2 SV=1

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 73/184 (39%), Gaps = 44/184 (23%)

Query: 100 VALACDDGCVRIY---RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156
           +A A  D  VR++   R   S E   H      +  V SV +SADG  L + S D  I+ 
Sbjct: 75  LASASRDKTVRLWVLDRKGKSSEFKAH------TAPVRSVDFSADGQFLVTASEDKSIKV 128

Query: 157 WDA---KLGYEIYRITVGLGGLGSGPE------------LCIWSLLSLRC---------- 191
           W     +  Y +YR T  +      P+            + IW   S +C          
Sbjct: 129 WSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTSKQCVNNFSDSVGF 188

Query: 192 ---------GTLV-SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 241
                    GT + SA S  +V+ WD R   LLQ +  H   VN L+  PS N + +  S
Sbjct: 189 ANFVDFSPNGTCIASAGSDHAVRIWDIRMNRLLQHYQVHSCGVNCLSFHPSGNSLVTASS 248

Query: 242 DGQV 245
           DG V
Sbjct: 249 DGTV 252

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|O76734|TUP1_DICDI General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 61/150 (40%), Gaps = 41/150 (27%)

Query: 133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGY----------EIYRITVGLGG--LGSG-- 178
           V SV  S DG ++ +GS D  +R WDA+ GY           +Y +     G  L SG  
Sbjct: 418 VTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSL 477

Query: 179 -PELCIWSL------------------------LSLRCGTLVSADSTGSVQFWDSRHGTL 213
              L +W L                         S     L+S     SVQFWD R+GT 
Sbjct: 478 DKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTT 537

Query: 214 LQAHSFHKGDVNALAAAPSHNR--VFSTGS 241
                 HK  V ++A +P +N   VF+TGS
Sbjct: 538 HMMLQGHKNSVISVALSPKNNSHGVFATGS 567

Acts as component of the trfA-tupA corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex.

Dictyostelium discoideum (taxid: 44689)

>sp|P87141|MIP1_SCHPO WD repeat-containing protein mip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mip1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 107  GCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYE 164
            G VR+ RI D+ + I + +LP R S  + S+T    G N++ +G SDG +R +D +L   
Sbjct: 1108 GDVRVIRIWDASKEICYANLPVRSSNSITSLTSDLVGCNIIVAGFSDGVLRVYDKRLPA- 1166

Query: 165  IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 224
              R ++         E+    + S     L+SA S G V+ WD R    LQ  S     +
Sbjct: 1167 --RDSLTDVWKEHSSEIVNVEMQSSGMRELISASSDGEVKLWDIRMNHSLQTFSTDNSGL 1224

Query: 225  NALAAAPSHNRVFSTGSDGQVI 246
             +L    SH  V++TGS  Q I
Sbjct: 1225 TSLTVH-SHAPVYATGSSNQSI 1245

Binds to and facilitates the functioning of the meiotic regulator mei2. May also be involved in conjugation by interacting with ste11. Essential for cell growth.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	744
224063433	819	predicted protein [Populus trichocarpa]	0.991	0.901	0.713	0.0
359491950	814	PREDICTED: cirhin-like [Vitis vinifera]	0.981	0.896	0.729	0.0
225458872	828	PREDICTED: cirhin-like isoform 1 [Vitis	0.983	0.884	0.717	0.0
225458874	821	PREDICTED: cirhin-like isoform 2 [Vitis	0.983	0.891	0.721	0.0
224127248	818	predicted protein [Populus trichocarpa]	0.993	0.903	0.709	0.0
449447069	818	PREDICTED: cirhin-like [Cucumis sativus]	0.989	0.899	0.693	0.0
449516996	818	PREDICTED: cirhin-like [Cucumis sativus]	0.989	0.899	0.691	0.0
255566736	1176	nucleotide binding protein, putative [Ri	0.920	0.582	0.739	0.0
147774825	792	hypothetical protein VITISV_004319 [Viti	0.896	0.842	0.72	0.0
22328400	815	transducin/WD40 domain-containing protei	0.975	0.890	0.635	0.0

>gi|224063433|ref|XP_002301144.1| predicted protein [Populus trichocarpa] gi|222842870|gb|EEE80417.1| predicted protein [Populus trichocarpa]

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/748 (71%), Positives = 622/748 (83%), Gaps = 10/748 (1%)

Query: 2   GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIG 61
           GLP GRLFSSSIDGSVSEWD++ LKQK VL+S   SIWQMAVAPS  S +H    S H+G
Sbjct: 77  GLPCGRLFSSSIDGSVSEWDIFHLKQKNVLESTGVSIWQMAVAPSTDSEIHTEHKSQHLG 136

Query: 62  NGYLNDKSNDSDDHETSESENDSDSDEL-HEQSVVEDRRVALACDDGCVRIYRITDSDEL 120
           NGYLN++    +  E S    D    +  HEQ VVED R+A+ACDDGCVRIY I  SDEL
Sbjct: 137 NGYLNNRYKGGEASEDSSESEDDSGSDEQHEQIVVEDPRLAIACDDGCVRIYTIPASDEL 196

Query: 121 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
           IY+R+LPRVSGRVLSVTWS D + +YSG+SDG++R WDAKLG EIYRIT GLGGLGSGP+
Sbjct: 197 IYNRTLPRVSGRVLSVTWSPDASRIYSGTSDGFVRCWDAKLGNEIYRITAGLGGLGSGPD 256

Query: 181 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240
           LCIWSLL+LRCGTLVSADSTG+VQFWDS HGTLLQAH+ HKGDVNALAAAPSHNRVFS G
Sbjct: 257 LCIWSLLALRCGTLVSADSTGAVQFWDSEHGTLLQAHTSHKGDVNALAAAPSHNRVFSAG 316

Query: 241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 300
           SDGQVILYK S E++      +SS+++KKWIYVG VRAHTHDVRALTVAVPISREDP+P+
Sbjct: 317 SDGQVILYKLSSEAVESVYD-TSSKMLKKWIYVGYVRAHTHDVRALTVAVPISREDPMPD 375

Query: 301 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 360
           DKVKR R ++KPI+FSYHKWAHLGVPMLISAGDDTKLFAY A EFTKFSPH+ICPAPQRV
Sbjct: 376 DKVKRIRHKKKPIEFSYHKWAHLGVPMLISAGDDTKLFAYSAQEFTKFSPHDICPAPQRV 435

Query: 361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG---GHASTSLLVQVKSKA 417
           PI L  NT+F+   LLLVQ S  LDIL V+ +    + +  G   G A+T +L ++K+K 
Sbjct: 436 PIQLALNTVFNQNCLLLVQSSSWLDILCVKTKGGSMTDTGPGPSRGRATTDILARIKTKR 495

Query: 418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY 477
           SRKIICSTISN+G+LFAYSDHVKPSLFELKK +V +  W +NK+ LP+ L +AHSM+FS 
Sbjct: 496 SRKIICSTISNAGVLFAYSDHVKPSLFELKK-EVRRSAWTVNKKPLPQNLPYAHSMVFSA 554

Query: 478 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 537
           DSS+L+IAGHDR+IYVVDV SSEL+HTFTPCREE D E+ PSEPPITKMFTS DGQWLAA
Sbjct: 555 DSSRLMIAGHDRKIYVVDVGSSELVHTFTPCREEFDEELPPSEPPITKMFTSCDGQWLAA 614

Query: 538 VNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ 597
           +NCFGD Y+FNLE QRQHWFI+RL+GASVTA GFPPQNNNVL+ITTSSNQVY FDVEAKQ
Sbjct: 615 INCFGDTYVFNLETQRQHWFIARLDGASVTAGGFPPQNNNVLVITTSSNQVYAFDVEAKQ 674

Query: 598 LGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDET 657
           LGEWSM+H+FVLP+RYQEFPGEVIGLSF P  S  SVIIYSARAMC+IDFG PVD +++ 
Sbjct: 675 LGEWSMRHSFVLPKRYQEFPGEVIGLSFLPLSSPPSVIIYSARAMCLIDFGMPVDREEDG 734

Query: 658 DMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKS 717
           D+V+ Q S+L+K+ +T +NG LKRKL++ Q E+     RKNFE  AFRDPVLF  HLS++
Sbjct: 735 DLVNSQHSSLKKLQATTLNGGLKRKLKEYQPEAKH---RKNFELLAFRDPVLFFSHLSEN 791

Query: 718 SMLIIDKPWLEVVKTFDA-PVHRHIYGT 744
           S+LI+DKPW++VVKTFDA PVHRHI+GT
Sbjct: 792 SILILDKPWMDVVKTFDAQPVHRHIFGT 819

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491950|ref|XP_003634345.1| PREDICTED: cirhin-like [Vitis vinifera]

 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/750 (72%), Positives = 627/750 (83%), Gaps = 20/750 (2%)

Query: 3   LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLM--HAVTNSDHI 60
           +P GRLFSSSIDGSVSEWDL+DLKQKIVL SI  SIWQMA AP N + +  H +    H+
Sbjct: 77  MPSGRLFSSSIDGSVSEWDLFDLKQKIVLDSIGVSIWQMAAAPYNDACLTQHEL---QHV 133

Query: 61  GNGYLNDKSNDSDDH--ETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD 118
           GNGYLNDK N+++D   ETSESE+D DS ELHE SV E+ RVA+ CDDGCVR+Y IT SD
Sbjct: 134 GNGYLNDKLNNAEDEDKETSESEDD-DSVELHEVSVFENPRVAMGCDDGCVRVYSITISD 192

Query: 119 ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178
           EL Y++SLPRVSGR+LSVTWS + +M+YSGSSDG+IR WDAKL +EIYRITVGLGGLGSG
Sbjct: 193 ELTYNKSLPRVSGRILSVTWSPNASMIYSGSSDGFIRCWDAKLAHEIYRITVGLGGLGSG 252

Query: 179 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 238
           PELCIWSLL+LRCGTLVS DS GSVQFWDS+HGTLLQAHS HKGDVNALAAAPSHNRVFS
Sbjct: 253 PELCIWSLLALRCGTLVSGDSNGSVQFWDSQHGTLLQAHSLHKGDVNALAAAPSHNRVFS 312

Query: 239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 298
            GSDGQVILYK S      +D  +SS+ IKKWIYV  VRAHTHDVRALTVAVPIS+E+  
Sbjct: 313 AGSDGQVILYKLSSS----DD--TSSKGIKKWIYVSYVRAHTHDVRALTVAVPISQEEKT 366

Query: 299 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 358
            + K KR R +EKP+DFSYHKWAHLGVPML+SAGDDTKLFAY   EFTKF PH+ICPAPQ
Sbjct: 367 VDKKDKRIRRKEKPVDFSYHKWAHLGVPMLVSAGDDTKLFAYSVKEFTKFRPHDICPAPQ 426

Query: 359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES---RSSSGGHASTSLLVQVKS 415
           RV + LV +T  +   LLLVQ S  LDIL +  ++   +    SS G  A+T LLV+VKS
Sbjct: 427 RVAMQLVLDTDVNKMPLLLVQASYWLDILCIHTKSGSVTDMGSSSYGALATTDLLVRVKS 486

Query: 416 KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 475
           KASRKIICSTIS SG LFAYSDHVKPSLFELK    G+  W +NKRQLP+KL FAHSM+F
Sbjct: 487 KASRKIICSTISASGSLFAYSDHVKPSLFELKSAH-GRSAWTVNKRQLPQKLPFAHSMVF 545

Query: 476 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL 535
           S DSS+L+IA +DRRIYVVDV SSEL+HTFTP  EEHD E  P EPPIT+M+TSSDGQWL
Sbjct: 546 SCDSSRLMIAAYDRRIYVVDVGSSELVHTFTPYSEEHDEESPPGEPPITRMYTSSDGQWL 605

Query: 536 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA 595
           AA+NCFGDVYIFNLEIQRQHWFISR++GASVTA GFPPQNNNVLIITTSSN+VY FDVEA
Sbjct: 606 AAINCFGDVYIFNLEIQRQHWFISRMDGASVTAGGFPPQNNNVLIITTSSNRVYAFDVEA 665

Query: 596 KQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDD 655
           KQLGEWS+QHTFVLPRRYQEFPGEVIGLSF  S SSS+VI+YSARAMC+IDFG PVD +D
Sbjct: 666 KQLGEWSIQHTFVLPRRYQEFPGEVIGLSFPISSSSSTVIVYSARAMCLIDFGMPVDQED 725

Query: 656 ETDMVSGQGSA-LRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHL 714
           E D+++ Q SA ++K+ ++PINGRLKRKL++   ++ KL+ RKNFEF AFRDPVLF+GHL
Sbjct: 726 ERDLINSQDSAIIKKLQNSPINGRLKRKLKESGLDT-KLNDRKNFEFCAFRDPVLFVGHL 784

Query: 715 SKSSMLIIDKPWLEVVKTFDAPVHRHIYGT 744
           SK+S+LIIDKPW +VV+TF APVHRHI+GT
Sbjct: 785 SKNSLLIIDKPWADVVRTFSAPVHRHIFGT 814

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458872|ref|XP_002285395.1| PREDICTED: cirhin-like isoform 1 [Vitis vinifera]

 Score = 1083 bits (2801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/762 (71%), Positives = 625/762 (82%), Gaps = 30/762 (3%)

Query: 3   LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN 62
           +P GRLFSSSIDGSVSEWDL+DLKQKIVL SI  SIWQMA AP N + +       H+GN
Sbjct: 77  MPSGRLFSSSIDGSVSEWDLFDLKQKIVLDSIGVSIWQMAAAPYNDACL-TQHELQHVGN 135

Query: 63  GYLNDKSNDSDDH--ETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 120
           GYLNDK N+++D   ETSESE+D DS ELHE SV E+ RVA+ CDDGCVR+Y IT SDEL
Sbjct: 136 GYLNDKLNNAEDEDKETSESEDD-DSVELHEVSVFENPRVAMGCDDGCVRVYSITISDEL 194

Query: 121 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
            Y++SLPRVSGR+LSVTWS + +M+YSGSSDG+IR WDAKL +EIYRITVGLGGLGSGPE
Sbjct: 195 TYNKSLPRVSGRILSVTWSPNASMIYSGSSDGFIRCWDAKLAHEIYRITVGLGGLGSGPE 254

Query: 181 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240
           LCIWSLL+LRCGTLVS DS GSVQFWDS+HGTLLQAHS HKGDVNALAAAPSHNRVFS G
Sbjct: 255 LCIWSLLALRCGTLVSGDSNGSVQFWDSQHGTLLQAHSLHKGDVNALAAAPSHNRVFSAG 314

Query: 241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 300
           SDGQVILYK S          +SS+ IKKWIYV  VRAHTHDVRALTVAVPIS+ED L +
Sbjct: 315 SDGQVILYKLSSSDD------TSSKGIKKWIYVSYVRAHTHDVRALTVAVPISQEDQLAD 368

Query: 301 DKVKRS--------------RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT 346
           +K KR               R +EKP+DFSYHKWAHLGVPML+SAGDDTKLFAY   EFT
Sbjct: 369 EKDKRIHCKEKTVDKKDKRIRRKEKPVDFSYHKWAHLGVPMLVSAGDDTKLFAYSVKEFT 428

Query: 347 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES---RSSSGG 403
           KF PH+ICPAPQRV + LV +T  +   LLLVQ S  LDIL +  ++   +    SS G 
Sbjct: 429 KFRPHDICPAPQRVAMQLVLDTDVNKMPLLLVQASYWLDILCIHTKSGSVTDMGSSSYGA 488

Query: 404 HASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL 463
            A+T LLV+VKSKASRKIICSTIS SG LFAYSDHVKPSLFELK    G+  W +NKRQL
Sbjct: 489 LATTDLLVRVKSKASRKIICSTISASGSLFAYSDHVKPSLFELKSAH-GRSAWTVNKRQL 547

Query: 464 PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI 523
           P+KL FAHSM+FS DSS+L+IA +DRRIYVVDV SSEL+HTFTP  EEHD E  P EPPI
Sbjct: 548 PQKLPFAHSMVFSCDSSRLMIAAYDRRIYVVDVGSSELVHTFTPYSEEHDEESPPGEPPI 607

Query: 524 TKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT 583
           T+M+TSSDGQWLAA+NCFGDVYIFNLEIQRQHWFISR++GASVTA GFPPQNNNVLIITT
Sbjct: 608 TRMYTSSDGQWLAAINCFGDVYIFNLEIQRQHWFISRMDGASVTAGGFPPQNNNVLIITT 667

Query: 584 SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMC 643
           SSN+VY FDVEAKQLGEWS+QHTFVLPRRYQEFPGEVIGLSF  S SSS+VI+YSARAMC
Sbjct: 668 SSNRVYAFDVEAKQLGEWSIQHTFVLPRRYQEFPGEVIGLSFPISSSSSTVIVYSARAMC 727

Query: 644 VIDFGRPVDPDDETDMVSGQGSA-LRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFF 702
           +IDFG PVD +DE D+++ Q SA ++K+ ++PINGRLKRKL++   ++ KL+ RKNFEF 
Sbjct: 728 LIDFGMPVDQEDERDLINSQDSAIIKKLQNSPINGRLKRKLKESGLDT-KLNDRKNFEFC 786

Query: 703 AFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT 744
           AFRDPVLF+GHLSK+S+LIIDKPW +VV+TF APVHRHI+GT
Sbjct: 787 AFRDPVLFVGHLSKNSLLIIDKPWADVVRTFSAPVHRHIFGT 828

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458874|ref|XP_002285401.1| PREDICTED: cirhin-like isoform 2 [Vitis vinifera]

 Score = 1075 bits (2781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/755 (72%), Positives = 623/755 (82%), Gaps = 23/755 (3%)

Query: 3   LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN 62
           +P GRLFSSSIDGSVSEWDL+DLKQKIVL SI  SIWQMA AP N + +       H+GN
Sbjct: 77  MPSGRLFSSSIDGSVSEWDLFDLKQKIVLDSIGVSIWQMAAAPYNDACL-TQHELQHVGN 135

Query: 63  GYLNDKSNDSDDH--ETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 120
           GYLNDK N+++D   ETSESE+D DS ELHE SV E+ RVA+ CDDGCVR+Y IT SDEL
Sbjct: 136 GYLNDKLNNAEDEDKETSESEDD-DSVELHEVSVFENPRVAMGCDDGCVRVYSITISDEL 194

Query: 121 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
            Y++SLPRVSGR+LSVTWS + +M+YSGSSDG+IR WDAKL +EIYRITVGLGGLGSGPE
Sbjct: 195 TYNKSLPRVSGRILSVTWSPNASMIYSGSSDGFIRCWDAKLAHEIYRITVGLGGLGSGPE 254

Query: 181 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240
           LCIWSLL+LRCGTLVS DS GSVQFWDS+HGTLLQAHS HKGDVNALAAAPSHNRVFS G
Sbjct: 255 LCIWSLLALRCGTLVSGDSNGSVQFWDSQHGTLLQAHSLHKGDVNALAAAPSHNRVFSAG 314

Query: 241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 300
           SDGQVILYK S      +D  +SS+ IKKWIYV  VRAHTHDVRALTVAVPIS+E    +
Sbjct: 315 SDGQVILYKLSSS----DD--TSSKGIKKWIYVSYVRAHTHDVRALTVAVPISQEGFFHD 368

Query: 301 DKV-------KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI 353
                     KR R +EKP+DFSYHKWAHLGVPML+SAGDDTKLFAY   EFTKF PH+I
Sbjct: 369 LCSFSLLILDKRIRRKEKPVDFSYHKWAHLGVPMLVSAGDDTKLFAYSVKEFTKFRPHDI 428

Query: 354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES---RSSSGGHASTSLL 410
           CPAPQRV + LV +T  +   LLLVQ S  LDIL +  ++   +    SS G  A+T LL
Sbjct: 429 CPAPQRVAMQLVLDTDVNKMPLLLVQASYWLDILCIHTKSGSVTDMGSSSYGALATTDLL 488

Query: 411 VQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFA 470
           V+VKSKASRKIICSTIS SG LFAYSDHVKPSLFELK    G+  W +NKRQLP+KL FA
Sbjct: 489 VRVKSKASRKIICSTISASGSLFAYSDHVKPSLFELKSAH-GRSAWTVNKRQLPQKLPFA 547

Query: 471 HSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 530
           HSM+FS DSS+L+IA +DRRIYVVDV SSEL+HTFTP  EEHD E  P EPPIT+M+TSS
Sbjct: 548 HSMVFSCDSSRLMIAAYDRRIYVVDVGSSELVHTFTPYSEEHDEESPPGEPPITRMYTSS 607

Query: 531 DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYV 590
           DGQWLAA+NCFGDVYIFNLEIQRQHWFISR++GASVTA GFPPQNNNVLIITTSSN+VY 
Sbjct: 608 DGQWLAAINCFGDVYIFNLEIQRQHWFISRMDGASVTAGGFPPQNNNVLIITTSSNRVYA 667

Query: 591 FDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRP 650
           FDVEAKQLGEWS+QHTFVLPRRYQEFPGEVIGLSF  S SSS+VI+YSARAMC+IDFG P
Sbjct: 668 FDVEAKQLGEWSIQHTFVLPRRYQEFPGEVIGLSFPISSSSSTVIVYSARAMCLIDFGMP 727

Query: 651 VDPDDETDMVSGQGSA-LRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVL 709
           VD +DE D+++ Q SA ++K+ ++PINGRLKRKL++   ++ KL+ RKNFEF AFRDPVL
Sbjct: 728 VDQEDERDLINSQDSAIIKKLQNSPINGRLKRKLKESGLDT-KLNDRKNFEFCAFRDPVL 786

Query: 710 FIGHLSKSSMLIIDKPWLEVVKTFDAPVHRHIYGT 744
           F+GHLSK+S+LIIDKPW +VV+TF APVHRHI+GT
Sbjct: 787 FVGHLSKNSLLIIDKPWADVVRTFSAPVHRHIFGT 821

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127248|ref|XP_002320024.1| predicted protein [Populus trichocarpa] gi|222860797|gb|EEE98339.1| predicted protein [Populus trichocarpa]

 Score = 1063 bits (2748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/746 (70%), Positives = 624/746 (83%), Gaps = 7/746 (0%)

Query: 2   GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIG 61
           GLP GRLFSSSIDGSVSEWDL+ LKQK VL+SI  SIWQMAVAPS++S +H      H+G
Sbjct: 77  GLPCGRLFSSSIDGSVSEWDLFHLKQKNVLESIGVSIWQMAVAPSSNSAIHTEHKPPHLG 136

Query: 62  NGYLNDKSNDSDDHETSESENDSDSDELH-EQSVVEDRRVALACDDGCVRIYRITDSDEL 120
           NGYLN +    ++ E S    D    +   EQ VVED  +A+ACDDGCVRIY + +SD L
Sbjct: 137 NGYLNGRHKGGEESEYSSESEDDSDLDEQREQIVVEDPCLAIACDDGCVRIYTVPESDGL 196

Query: 121 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
            Y+++LPRVSGRVLSVTWS D + +YSGSSDG+IR WDAKLG EIYRIT GLGGLGSGP+
Sbjct: 197 TYNKTLPRVSGRVLSVTWSPDASRIYSGSSDGFIRCWDAKLGNEIYRITAGLGGLGSGPD 256

Query: 181 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240
           LCIWSLL+LRCGTLVSADSTG+VQFWDS+HGTLLQAH+ HKGDVNALAAAPSHNRVFS G
Sbjct: 257 LCIWSLLALRCGTLVSADSTGAVQFWDSQHGTLLQAHTSHKGDVNALAAAPSHNRVFSAG 316

Query: 241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 300
           SDGQVILYK S E++   + +SSS+++KKWIYVG VRAHTHDVRALTVAVPISREDPL +
Sbjct: 317 SDGQVILYKLSSETVESGNDISSSKMLKKWIYVGYVRAHTHDVRALTVAVPISREDPLAD 376

Query: 301 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV 360
           DK+KR R ++KPIDFSY KWAHLGVPMLISAGDDTKLFAY A EFTKFSPH+ICPAPQRV
Sbjct: 377 DKIKRIRHKKKPIDFSYSKWAHLGVPMLISAGDDTKLFAYSAQEFTKFSPHDICPAPQRV 436

Query: 361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLE-NNVESRSSSGGHASTSLLVQVKSKASR 419
           PI L  NT+F+   LLLVQ S  LDIL V+ +  ++     S G A+T +L ++K+K SR
Sbjct: 437 PIQLALNTVFNQNCLLLVQSSSWLDILCVQTKGGSMTGPGPSRGRATTDILARIKTKGSR 496

Query: 420 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 479
           KIICSTISN+G+LFAYSDHVKP+LFELKK  V +  W +NK+ LP+KL +AHSM+FS DS
Sbjct: 497 KIICSTISNAGVLFAYSDHVKPNLFELKK-DVRKSAWTVNKKPLPQKLPYAHSMVFSADS 555

Query: 480 SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 539
           S+L+IAGHDRRIYVVDV S+EL+HTFTP  E +D E+ P+EPPITKMFTS DGQWL+A+N
Sbjct: 556 SRLMIAGHDRRIYVVDVCSTELVHTFTPRCEGNDEELPPNEPPITKMFTSCDGQWLSAIN 615

Query: 540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 599
           CFGD+Y+FNLE QRQHWFI+RL+GASVTA GFPPQ NNVL++TTSSNQVY FDVEAKQLG
Sbjct: 616 CFGDIYVFNLETQRQHWFIARLDGASVTAGGFPPQKNNVLVVTTSSNQVYAFDVEAKQLG 675

Query: 600 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDM 659
           EWS +HTFVLPRRYQEFPGEVIGLSF P  S  SVIIYSARAMC+IDFG PVD ++++D+
Sbjct: 676 EWSTRHTFVLPRRYQEFPGEVIGLSFLPMSSPPSVIIYSARAMCLIDFGMPVDREEDSDL 735

Query: 660 VSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSM 719
           V+GQ S L+K+ +T +NG LKR+L++ Q E+ KL  RKNFE  AFRDPVLFIGHLS++S+
Sbjct: 736 VNGQHSPLKKLQTTTMNGGLKRRLKEYQPET-KL--RKNFEILAFRDPVLFIGHLSENSI 792

Query: 720 LIIDKPWLEVVKTFDA-PVHRHIYGT 744
           LI+DKPW++VVKTFDA PVHRHI+GT
Sbjct: 793 LIMDKPWMDVVKTFDAQPVHRHIFGT 818

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447069|ref|XP_004141292.1| PREDICTED: cirhin-like [Cucumis sativus]

 Score = 1037 bits (2682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/746 (69%), Positives = 600/746 (80%), Gaps = 10/746 (1%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMH-AVTNSDHIGN 62
           P GRLFSSSIDGS+SEWDL+DL QK  L+SI  SIWQ+A A S+S  +H     +    N
Sbjct: 78  PSGRLFSSSIDGSISEWDLFDLTQKSALESIGVSIWQIAAASSSSPEVHREEVKTQDTEN 137

Query: 63  GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY 122
           G++ D   D  D   SESE+DSDS ELH QS   D  +A+ACDDGCVRIY I D++E IY
Sbjct: 138 GHVTDDETDCQD--CSESEDDSDSSELHVQS--SDTSLAIACDDGCVRIYNIGDAEEFIY 193

Query: 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 182
            RSL RVSGRVLSVTWS D   ++SGSSDG+IR W+A LG+EIYRIT GLGGLGSGPELC
Sbjct: 194 KRSLSRVSGRVLSVTWSNDAERIFSGSSDGFIRCWNASLGHEIYRITAGLGGLGSGPELC 253

Query: 183 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
           +WSLL LRCGTLVSADSTGSVQFWDS HGTLLQAH+ HKGDVNALA  P+HNRV+S GSD
Sbjct: 254 VWSLLFLRCGTLVSADSTGSVQFWDSNHGTLLQAHTLHKGDVNALAVTPNHNRVYSAGSD 313

Query: 243 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 302
           GQVILYK S E++G ++   SSE++KKWIYVG VRAHTHD+RALTVAVPI RE+PL +D 
Sbjct: 314 GQVILYKLSNENVGSSEDKGSSEMMKKWIYVGHVRAHTHDIRALTVAVPICREEPLQDDV 373

Query: 303 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362
           VKR R R+KP DFSY KWAHLGVPML+S GDDTKLFAY A EFTKFSPH+ICPAPQR P+
Sbjct: 374 VKRIRHRKKPNDFSYRKWAHLGVPMLMSGGDDTKLFAYSAQEFTKFSPHDICPAPQRAPM 433

Query: 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG---GHASTSLLVQVKSKASR 419
            LV NT+F+   LLLVQ +  LDIL +R ++      + G   GH    LLV+VKSKASR
Sbjct: 434 QLVLNTVFNQAPLLLVQGAHSLDILCIRPKSGSFGDKACGPSKGHTKADLLVRVKSKASR 493

Query: 420 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 479
           KIICSTISNSG LFAYSDH KP+LFELKK    +G W +++R+LP  L FAHSM+FS+DS
Sbjct: 494 KIICSTISNSGKLFAYSDHTKPNLFELKKSGGSKGSWTVSRRKLPNVLPFAHSMVFSFDS 553

Query: 480 SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 539
           S+LIIAGHD+RIYVVDV S E+LH+FTP RE  D  + P+EPPITK+FTSSDGQWLAAVN
Sbjct: 554 SRLIIAGHDKRIYVVDVGSLEVLHSFTPFRELQDDTLPPTEPPITKIFTSSDGQWLAAVN 613

Query: 540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 599
           CFGD+Y+FN+EI RQHWFISRL+GAS+TA GFP  NNNVL++TTSSNQVY FDVEAKQLG
Sbjct: 614 CFGDIYVFNMEIMRQHWFISRLDGASITAGGFPQWNNNVLVVTTSSNQVYAFDVEAKQLG 673

Query: 600 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDM 659
           +WSM+HT  LP+R+QEFPGEVIGLSF PS +S  VI+YS+RAMC+IDF   VD DDE  M
Sbjct: 674 DWSMRHTQALPKRFQEFPGEVIGLSFPPSATSLPVIVYSSRAMCLIDFKMSVDQDDEYVM 733

Query: 660 VSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSM 719
           +SGQ S ++ +  TPING+LKRKLRDCQ E  + HGRKNFE F FRDPVL IGHLSK+S+
Sbjct: 734 ISGQDSTVKSLWGTPINGKLKRKLRDCQIE-GRPHGRKNFEIFPFRDPVLLIGHLSKTSL 792

Query: 720 LIIDKPWLEVVKTFD-APVHRHIYGT 744
           LII+KPWLEV  TFD APVHRHIYGT
Sbjct: 793 LIIEKPWLEVANTFDTAPVHRHIYGT 818

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516996|ref|XP_004165532.1| PREDICTED: cirhin-like [Cucumis sativus]

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/746 (69%), Positives = 600/746 (80%), Gaps = 10/746 (1%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMH-AVTNSDHIGN 62
           P GRLFSSSIDGS+SEWDL+DL QK  L+SI  SIWQ+A A S+S  +H     +    N
Sbjct: 78  PSGRLFSSSIDGSISEWDLFDLTQKSALESIGVSIWQIAAASSSSPEVHREEVKTQDTEN 137

Query: 63  GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY 122
           G++ D   D  D   SESE+DSDS ELH QS   D  +A+ACDDGCVRIY I D++E IY
Sbjct: 138 GHVTDDETDCQD--CSESEDDSDSSELHVQS--SDTSLAIACDDGCVRIYNIGDAEEFIY 193

Query: 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 182
            RSL RVSGRVLSVTWS D   ++SGSSDG+IR W+A LG+EIYRIT GLGGLGSGPELC
Sbjct: 194 KRSLSRVSGRVLSVTWSNDAERIFSGSSDGFIRCWNASLGHEIYRITAGLGGLGSGPELC 253

Query: 183 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD 242
           +WSLL LRCGTLVSADS+GSVQFWDS HGTLLQAH+ HKGDVNALA  P+HNRV+S GSD
Sbjct: 254 VWSLLFLRCGTLVSADSSGSVQFWDSNHGTLLQAHTLHKGDVNALAVTPNHNRVYSAGSD 313

Query: 243 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDK 302
           GQVILYK S E++G ++   SSE++KKWIYVG VRAHTHD+RALTVAVPI RE+PL +D 
Sbjct: 314 GQVILYKLSNENVGSSEDKGSSEMMKKWIYVGHVRAHTHDIRALTVAVPICREEPLQDDV 373

Query: 303 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI 362
           VKR R R+KP DFSY KWAHLGVPML+S GDDTKLFAY A EFTKFSPH+ICPAPQR P+
Sbjct: 374 VKRIRHRKKPNDFSYRKWAHLGVPMLMSGGDDTKLFAYSAQEFTKFSPHDICPAPQRAPM 433

Query: 363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG---GHASTSLLVQVKSKASR 419
            LV NT+F+   LLLVQ +  LDIL +R ++      + G   GH    LLV+VKSKASR
Sbjct: 434 QLVLNTVFNQAPLLLVQGAHSLDILCIRPKSGSFGDKACGPSKGHTKADLLVRVKSKASR 493

Query: 420 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS 479
           KIICSTISNSG LFAYSDH KP+LFELKK    +G W +++R+LP  L FAHSM+FS+DS
Sbjct: 494 KIICSTISNSGKLFAYSDHTKPNLFELKKSGGSKGSWTVSRRKLPNVLPFAHSMVFSFDS 553

Query: 480 SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN 539
           S+LIIAGHD+RIYVVDV S E+LH+FTP RE  D  + P+EPPITK+FTSSDGQWLAAVN
Sbjct: 554 SRLIIAGHDKRIYVVDVGSLEVLHSFTPFRELQDDTLPPTEPPITKIFTSSDGQWLAAVN 613

Query: 540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG 599
           CFGD+Y+FN+EI RQHWFISRL+GAS+TA GFP  NNNVL++TTSSNQVY FDVEAKQLG
Sbjct: 614 CFGDIYVFNMEIMRQHWFISRLDGASITAGGFPQWNNNVLVVTTSSNQVYAFDVEAKQLG 673

Query: 600 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDM 659
           +WSM+HT  LP+R+QEFPGEVIGLSF PS +S  VI+YS+RAMC+IDF   VD DDE  M
Sbjct: 674 DWSMRHTQALPKRFQEFPGEVIGLSFPPSATSLPVIVYSSRAMCLIDFKMSVDQDDEYVM 733

Query: 660 VSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSM 719
           +SGQ S ++ +  TPING+LKRKLRDCQ E  + HGRKNFE F FRDPVL IGHLSK+S+
Sbjct: 734 ISGQDSTVKSLWGTPINGKLKRKLRDCQIE-GRPHGRKNFEIFPFRDPVLLIGHLSKTSL 792

Query: 720 LIIDKPWLEVVKTFD-APVHRHIYGT 744
           LII+KPWLEV  TFD APVHRHIYGT
Sbjct: 793 LIIEKPWLEVANTFDTAPVHRHIYGT 818

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566736|ref|XP_002524352.1| nucleotide binding protein, putative [Ricinus communis] gi|223536443|gb|EEF38092.1| nucleotide binding protein, putative [Ricinus communis]

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/692 (73%), Positives = 588/692 (84%), Gaps = 7/692 (1%)

Query: 2   GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIG 61
           GLP GRLFSSSIDGSV +WDL+ LKQK VL+SI  SIWQMAVAPS++ L  A   S H+G
Sbjct: 78  GLPCGRLFSSSIDGSVLQWDLFHLKQKTVLESIGVSIWQMAVAPSSNLLSDANNESQHLG 137

Query: 62  NGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELI 121
           NG+LN K NDS     SES++DSDSDELH  SVVED RVALACDDGCVRIY I+DSDE I
Sbjct: 138 NGFLNAKENDS--DSESESQDDSDSDELHVHSVVEDPRVALACDDGCVRIYTISDSDEFI 195

Query: 122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL 181
           Y+++LPRVSGRVLSVTWS+D + +Y+GSSDG+IRSWDAKLG+EIYRIT GLGGLGS  EL
Sbjct: 196 YNKTLPRVSGRVLSVTWSSDASRIYTGSSDGFIRSWDAKLGHEIYRITAGLGGLGSESEL 255

Query: 182 CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 241
           CIWSLL+LRCGTLVSADSTGSVQFWDS+HGTLLQAHS HKGDVNALAAAPSHNRVFS GS
Sbjct: 256 CIWSLLALRCGTLVSADSTGSVQFWDSQHGTLLQAHSSHKGDVNALAAAPSHNRVFSAGS 315

Query: 242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 301
           DGQVILYK S E++G +D +S+   +KKW+Y+G VRAHTHDVRALTVAVPISRED +P++
Sbjct: 316 DGQVILYKLSGETVGSSDDVSAKS-MKKWVYIGYVRAHTHDVRALTVAVPISREDSVPDE 374

Query: 302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP 361
           KVKR R R++PIDFSYHKWAHLGVPMLISAGDDTKLFAY A EFTKFSPH+ICPAPQRVP
Sbjct: 375 KVKRIRSRKRPIDFSYHKWAHLGVPMLISAGDDTKLFAYSAKEFTKFSPHDICPAPQRVP 434

Query: 362 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG---GHASTSLLVQVKSKAS 418
           I LV NT+F+  SLLLVQ S  LDIL +R+++     +S G    HA+T LL ++K+KAS
Sbjct: 435 IQLVLNTVFNQNSLLLVQGSNWLDILCLRMKSGTMQDASPGPSRDHANTDLLARIKTKAS 494

Query: 419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD 478
           RKIICSTISNSG L AYSDHVKP+LFELKK   G+  W +NKRQLP+KL FAHS+IFS D
Sbjct: 495 RKIICSTISNSGTLLAYSDHVKPNLFELKKLN-GKASWSVNKRQLPQKLPFAHSLIFSSD 553

Query: 479 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 538
           +++L+IAGHDRRIYVVDV SSEL+HTFTP  E  D E+ PSEPPITKMF+S DGQWLAAV
Sbjct: 554 NARLMIAGHDRRIYVVDVGSSELVHTFTPRHEGDDEELPPSEPPITKMFSSGDGQWLAAV 613

Query: 539 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598
           NCFGDVYIFNLE QRQHWFI+RL+GASVTA GFPPQNNNVL++TTS NQVY FDVEAKQL
Sbjct: 614 NCFGDVYIFNLETQRQHWFIARLDGASVTAGGFPPQNNNVLVVTTSLNQVYAFDVEAKQL 673

Query: 599 GEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETD 658
           GEWSM+HTFVLP+RYQEFPGEVIGLSF P  S  SVIIYSARAMC+I+FG PVD ++E D
Sbjct: 674 GEWSMRHTFVLPKRYQEFPGEVIGLSFLPRSSPPSVIIYSARAMCLINFGMPVDREEEND 733

Query: 659 MVSGQGSALRKIASTPINGRLKRKLRDCQTES 690
           +V+GQ S L+K+ +T INGRLKR+    + E+
Sbjct: 734 LVNGQHSPLKKLQNTLINGRLKRRRAAKEAET 765

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774825|emb|CAN60281.1| hypothetical protein VITISV_004319 [Vitis vinifera]

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/700 (72%), Positives = 572/700 (81%), Gaps = 33/700 (4%)

Query: 3   LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLM--HAVTNSDHI 60
           +P GRLFSSSIDGSVSEWDL+DLKQKIVL SI  SIWQMA AP N + +  H +    H+
Sbjct: 77  MPSGRLFSSSIDGSVSEWDLFDLKQKIVLDSIGVSIWQMAAAPYNDACLTQHEL---QHV 133

Query: 61  GNGYLNDKSNDSDDH--ETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD 118
           GNGYLNDK N+++D   ETSESE+D DS ELHE SV E+ RVA+ CDDGCVR+Y IT SD
Sbjct: 134 GNGYLNDKLNNAEDEDKETSESEDD-DSVELHEVSVFENPRVAMGCDDGCVRVYSITISD 192

Query: 119 ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178
           EL Y++SLPRVSGR+LSVTWS + +M+YSGSSDG+IR WDAKL +EIYRITVGLGGLGSG
Sbjct: 193 ELTYNKSLPRVSGRILSVTWSPNASMIYSGSSDGFIRCWDAKLAHEIYRITVGLGGLGSG 252

Query: 179 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS 238
           PELCIWSLL+LRCGTLVS DS GSVQFWDS+HGTLLQAHS HKGDVNALAAAPSHNRVFS
Sbjct: 253 PELCIWSLLALRCGTLVSGDSNGSVQFWDSQHGTLLQAHSLHKGDVNALAAAPSHNRVFS 312

Query: 239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL 298
            GSDGQVILYK S      +D  +SS+ IKKWIYV  VRAHTHDVRALTVAVPIS+ED L
Sbjct: 313 AGSDGQVILYKLSSS----DD--TSSKGIKKWIYVSYVRAHTHDVRALTVAVPISQEDQL 366

Query: 299 PEDKVKRS--------------RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE 344
            ++K KR               R +EKP+DFSYHKWAHLGVPML+SAGDDTKLFAY   E
Sbjct: 367 ADEKDKRIHCKEKTVDKKDKRIRRKEKPVDFSYHKWAHLGVPMLVSAGDDTKLFAYSVKE 426

Query: 345 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVES---RSSS 401
           FTKF PH+ICPAPQRV + LV +T  +   LLLVQ S  LDIL +  ++   +    SS 
Sbjct: 427 FTKFRPHDICPAPQRVAMQLVLDTDVNKMPLLLVQASYWLDILCIHTKSGSVTDMGSSSY 486

Query: 402 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR 461
           G  A+T LLV+VKSKASRKIICSTIS SG LFAYSDHVKPSLFELK    G+  W +NKR
Sbjct: 487 GALATTDLLVRVKSKASRKIICSTISASGSLFAYSDHVKPSLFELKSAH-GRSAWTVNKR 545

Query: 462 QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP 521
           QLP+KL FAHSM+FS DSS+L+IA +DRRIYVVDV SSEL+HTFTP  EEHD E  P EP
Sbjct: 546 QLPQKLPFAHSMVFSCDSSRLMIAAYDRRIYVVDVGSSELVHTFTPYSEEHDEESPPGEP 605

Query: 522 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLII 581
           PIT+M TSSDGQWLAA+NCFGDVYIFNLEIQRQHWFISR++GASVTA GFPPQNNNVLII
Sbjct: 606 PITRMXTSSDGQWLAAINCFGDVYIFNLEIQRQHWFISRMDGASVTAGGFPPQNNNVLII 665

Query: 582 TTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA 641
           TTSSN+VY FDVEAKQLGEWS+QHTFVLPRRYQEFPGEVIGLSF  S SSS+VI+YSARA
Sbjct: 666 TTSSNRVYAFDVEAKQLGEWSIQHTFVLPRRYQEFPGEVIGLSFPISSSSSTVIVYSARA 725

Query: 642 MCVIDFGRPVDPDDETDMVSGQGSA-LRKIASTPINGRLK 680
           MC+IDFG PVD +DE D+++ Q SA ++K+ ++PINGRLK
Sbjct: 726 MCLIDFGMPVDQEDERDLINSQDSAIIKKLQNSPINGRLK 765

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328400|ref|NP_567317.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|19347784|gb|AAL86343.1| unknown protein [Arabidopsis thaliana] gi|22136758|gb|AAM91698.1| unknown protein [Arabidopsis thaliana] gi|332657167|gb|AEE82567.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/760 (63%), Positives = 591/760 (77%), Gaps = 34/760 (4%)

Query: 1   MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHI 60
           +GLP GRLFSSSIDGS+SEWDL+DLKQKIVL+SI  SIWQMA+AP    +    ++ + I
Sbjct: 74  IGLPSGRLFSSSIDGSISEWDLFDLKQKIVLESIGISIWQMALAP----ISGFSSDVEGI 129

Query: 61  GNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE-DRRVALACDDGCVRIYRITDSDE 119
            NGYL++KSND  + E    E+ SDSDE HE+S  E DR +A ACDDGCVR+YRI++ ++
Sbjct: 130 KNGYLSEKSND--EEEIGSEEDGSDSDEFHEKSEEEIDRILAAACDDGCVRLYRISNLEK 187

Query: 120 LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP 179
           L Y+RSLPRVSGR LSVTWS D   ++SGSSDG IR WDA   +E+YRIT GLGGLGS  
Sbjct: 188 LTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDATSCHEVYRITAGLGGLGSSS 247

Query: 180 ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST 239
           E+C+WSLLSLRC  LVS DSTG+VQFWDS HGTLL+AHS HKGDVN LAAAPSHNRVFS 
Sbjct: 248 EICVWSLLSLRCSVLVSGDSTGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSA 307

Query: 240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLP 299
           G+DGQVILYK S  + G  D   SS   +KW Y+G V+AHTHD+RALTVAVPISREDP P
Sbjct: 308 GADGQVILYKLSGSTNGSQDLKPSSS--QKWDYIGYVKAHTHDIRALTVAVPISREDPFP 365

Query: 300 EDKV-----KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC 354
           +D +     ++ R + KP+DF+YHKWAHLGVPMLISAGDD KLFAY   EFTKFSPH+IC
Sbjct: 366 DDILPDKASRKHRKKGKPVDFTYHKWAHLGVPMLISAGDDAKLFAYSIQEFTKFSPHDIC 425

Query: 355 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK 414
           PAPQR+P+ +VHN++F+ TSLLLVQ    LDIL + +       S S G AST  LV+VK
Sbjct: 426 PAPQRIPMQMVHNSMFNKTSLLLVQGISTLDILRLNIS------SDSSGRASTKSLVRVK 479

Query: 415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMI 474
           S+ +RKIICS ISN+G  FAYSD + PSLFELKK +  +  W +++R+LP +L FAHSMI
Sbjct: 480 SRDARKIICSAISNTGSHFAYSDQIGPSLFELKKNEFTKCPWSVSRRRLP-ELPFAHSMI 538

Query: 475 FSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREI-QPSEPPITKMFTSSDGQ 533
           FS D S+LIIAGHDRRIY +D+SS EL++ FTP REEH+ E   P EPPITK+FTSSDGQ
Sbjct: 539 FSSDCSRLIIAGHDRRIYTIDISSLELVYAFTPSREEHEGEAPTPKEPPITKLFTSSDGQ 598

Query: 534 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV 593
           WLAA+NCFGD+Y+FNLE QRQHWFISRL+GASVTAAGF P NNN L+I+TSSNQV+ FDV
Sbjct: 599 WLAAINCFGDIYVFNLETQRQHWFISRLDGASVTAAGFHPWNNNALVISTSSNQVFAFDV 658

Query: 594 EAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDP 653
           EA+QLG+WS+ +T+VLP+RYQEFPGEV+GLSFSPSP+SSSVI+YS+RA C+IDFG+PV+ 
Sbjct: 659 EARQLGKWSLLNTYVLPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEE 718

Query: 654 DDETDMVSGQGSALRKIASTPINGRL--------KRKLRDCQTESNKLHGRKNFEFFAFR 705
           D+E D+ +G  S  + +    +N  L        KR+L + Q E  K + RKNFE     
Sbjct: 719 DEEYDLPNGNLS--KTLEGKLVNLGLKKGKGTNRKRRLDEYQLE-GKSNERKNFEILPSN 775

Query: 706 DPVLFIGHLSKSSMLIIDKPWLEVVKTFD-APVHRHIYGT 744
            PVLF+GHLSK+S+L+I+KPW++VVK+ D  PV RHI+GT
Sbjct: 776 HPVLFVGHLSKNSILVIEKPWMDVVKSLDNQPVDRHIFGT 815

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	744
TAIR|locus:2124377	815	PCN "AT4G07410" [Arabidopsis t	0.979	0.894	0.607	1.3e-240
TAIR|locus:2015909	810	AT1G27470 "AT1G27470" [Arabido	0.978	0.898	0.600	4.2e-237
UNIPROTKB|Q969X6	686	CIRH1A "Cirhin" [Homo sapiens	0.240	0.260	0.338	2e-44
UNIPROTKB|Q5R994	686	DKFZp459B1739 "Putative unchar	0.240	0.260	0.328	3.7e-44
ZFIN|ZDB-GENE-040426-2466	685	cirh1a "cirrhosis, autosomal r	0.279	0.303	0.305	2.9e-41
UNIPROTKB|E1BC40	687	CIRH1A "Uncharacterized protei	0.237	0.257	0.340	5.1e-40
POMBASE|SPBC19F5.02c	710	utp4 "U3 snoRNP protein Utp4 (	0.240	0.252	0.304	4e-31
RGD|1311341	686	Cirh1a "cirrhosis, autosomal r	0.240	0.260	0.333	1.1e-24
MGI|MGI:1096573	686	Cirh1a "cirrhosis, autosomal r	0.239	0.259	0.328	1.4e-24
ASPGD|ASPL0000010371	938	AN3794 [Emericella nidulans (t	0.243	0.192	0.336	1.1e-18

TAIR|locus:2124377 PCN "AT4G07410" [Arabidopsis thaliana (taxid:3702)]

 Score = 2319 (821.4 bits), Expect = 1.3e-240, P = 1.3e-240
 Identities = 460/757 (60%), Positives = 563/757 (74%)

Query:     1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHI 60
             +GLP GRLFSSSIDGS+SEWDL+DLKQKIVL+SI  SIWQMA+AP +       ++ + I
Sbjct:    74 IGLPSGRLFSSSIDGSISEWDLFDLKQKIVLESIGISIWQMALAPISGFS----SDVEGI 129

Query:    61 GNGYLNDKXXXXXXXXXXXXXXXXXXXXXXXQSVVEDRRVALACDDGCVRIYRITDSDEL 120
              NGYL++K                       +  + DR +A ACDDGCVR+YRI++ ++L
Sbjct:   130 KNGYLSEKSNDEEEIGSEEDGSDSDEFHEKSEEEI-DRILAAACDDGCVRLYRISNLEKL 188

Query:   121 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
              Y+RSLPRVSGR LSVTWS D   ++SGSSDG IR WDA   +E+YRIT GLGGLGS  E
Sbjct:   189 TYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDATSCHEVYRITAGLGGLGSSSE 248

Query:   181 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240
             +C+WSLLSLRC  LVS DSTG+VQFWDS HGTLL+AHS HKGDVN LAAAPSHNRVFS G
Sbjct:   249 ICVWSLLSLRCSVLVSGDSTGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSAG 308

Query:   241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE 300
             +DGQVILYK S  + G  D   SS   +KW Y+G V+AHTHD+RALTVAVPISREDP P+
Sbjct:   309 ADGQVILYKLSGSTNGSQDLKPSSS--QKWDYIGYVKAHTHDIRALTVAVPISREDPFPD 366

Query:   301 D----KVKRS-RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICP 355
             D    K  R  R + KP+DF+YHKWAHLGVPMLISAGDD KLFAY   EFTKFSPH+ICP
Sbjct:   367 DILPDKASRKHRKKGKPVDFTYHKWAHLGVPMLISAGDDAKLFAYSIQEFTKFSPHDICP 426

Query:   356 APQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVEXXXXXXXXXXXXLLVQVKS 415
             APQR+P+ +VHN++F+ TSLLLVQ    LDIL  RL  N+              LV+VKS
Sbjct:   427 APQRIPMQMVHNSMFNKTSLLLVQGISTLDIL--RL--NISSDSSGRASTKS--LVRVKS 480

Query:   416 KASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF 475
             + +RKIICS ISN+G  FAYSD + PSLFELKK +  +  W +++R+LP +L FAHSMIF
Sbjct:   481 RDARKIICSAISNTGSHFAYSDQIGPSLFELKKNEFTKCPWSVSRRRLP-ELPFAHSMIF 539

Query:   476 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ-PSEPPITKMFTSSDGQW 534
             S D S+LIIAGHDRRIY +D+SS EL++ FTP REEH+ E   P EPPITK+FTSSDGQW
Sbjct:   540 SSDCSRLIIAGHDRRIYTIDISSLELVYAFTPSREEHEGEAPTPKEPPITKLFTSSDGQW 599

Query:   535 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE 594
             LAA+NCFGD+Y+FNLE QRQHWFISRL+GASVTAAGF P NNN L+I+TSSNQV+ FDVE
Sbjct:   600 LAAINCFGDIYVFNLETQRQHWFISRLDGASVTAAGFHPWNNNALVISTSSNQVFAFDVE 659

Query:   595 AKQLGEWSMQHTFVLPRRYQEFPGEVIGLXXXXXXXXXXVIIYSARAMCVIDFGRPVDPD 654
             A+QLG+WS+ +T+VLP+RYQEFPGEV+GL          VI+YS+RA C+IDFG+PV+ D
Sbjct:   660 ARQLGKWSLLNTYVLPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEED 719

Query:   655 DETDMVSGQGS-ALR-KIASTPIN-GR---LKRKLRDCQTESNKLHGRKNFEFFAFRDPV 708
             +E D+ +G  S  L  K+ +  +  G+    KR+L + Q E  K + RKNFE      PV
Sbjct:   720 EEYDLPNGNLSKTLEGKLVNLGLKKGKGTNRKRRLDEYQLEG-KSNERKNFEILPSNHPV 778

Query:   709 LFIGHLSKSSMLIIDKPWLEVVKTFD-APVHRHIYGT 744
             LF+GHLSK+S+L+I+KPW++VVK+ D  PV RHI+GT
Sbjct:   779 LFVGHLSKNSILVIEKPWMDVVKSLDNQPVDRHIFGT 815

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009790 "embryo development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010449 "root meristem growth" evidence=IMP

GO:0035266 "meristem growth" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048569 "post-embryonic organ development" evidence=IGI

GO:2000012 "regulation of auxin polar transport" evidence=IMP

TAIR|locus:2015909 AT1G27470 "AT1G27470" [Arabidopsis thaliana (taxid:3702)]

 Score = 2286 (809.8 bits), Expect = 4.2e-237, P = 4.2e-237
 Identities = 451/751 (60%), Positives = 552/751 (73%)

Query:     2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIG 61
             G    RLFSSSIDGS+SEWDL+DLKQK+VL SI FSIWQ+A+AP   S+      +  I 
Sbjct:    75 GSSSARLFSSSIDGSISEWDLFDLKQKVVLDSIGFSIWQIALAPI--SIEAESKEAKLIQ 132

Query:    62 NGYLNDKXXXXXXXXXXXXXXXXXXXXXXXQSVVEDRRVALACDDGCVRIYRITDSDELI 121
             NGYL++K                       +++  DR +A ACDDGCVRIY I++SD+L 
Sbjct:   133 NGYLSEKSDDEEESGVEDDSELDELDEKV-EAL--DRHLAAACDDGCVRIYYISESDKLT 189

Query:   122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL 181
             Y+RSLPRV+GR LSVTWSAD   ++SGSSDG IR WDA L +E+YRITVGLGGLG+G EL
Sbjct:   190 YYRSLPRVTGRALSVTWSADAQRIFSGSSDGLIRCWDANLCHEVYRITVGLGGLGNGSEL 249

Query:   182 CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS 241
             CIWSLLSLR G LVS DSTGSVQFWDS+HGTLLQAHS HKGDVNALAA+PSHNRVFS G+
Sbjct:   250 CIWSLLSLRYGVLVSGDSTGSVQFWDSQHGTLLQAHSNHKGDVNALAASPSHNRVFSAGA 309

Query:   242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED 301
             DGQVILYK S  +    D   SS   +KW Y+G VRAHTHD+RALTVAVPIS E  +P+ 
Sbjct:   310 DGQVILYKLSGGTSRSQDFKPSSA--QKWDYIGCVRAHTHDIRALTVAVPISWEGSIPDR 367

Query:   302 KVKRS---RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ 358
               K +   + R++P  FSYHKWAHLGVPMLISAGDD KL+AY   EFTKF PH+ICPAPQ
Sbjct:   368 NAKVTSPKQRRKEPAGFSYHKWAHLGVPMLISAGDDAKLYAYSVQEFTKFPPHDICPAPQ 427

Query:   359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVEXXXXXXXXXXXXLLVQVKSKAS 418
             RVP+ +VHNT+F+ TSLLLVQ SC LDIL + + N+               LV+VKSK +
Sbjct:   428 RVPMQMVHNTVFNQTSLLLVQDSCSLDILRIHISND------SSGRVSTKPLVRVKSKDA 481

Query:   419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD 478
             RKIICS ISN+G LFAYSD V+PSLFELKK K+G+  W  N+++LP  L FAHSM+FS D
Sbjct:   482 RKIICSAISNTGSLFAYSDQVRPSLFELKKNKIGKNPWSANRKRLPN-LPFAHSMVFSCD 540

Query:   479 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV 538
              S+LIIAGHDRRIY+VDV S ELLH+FTP +E  + E  P EPPITK++TSS+  WLAA+
Sbjct:   541 CSRLIIAGHDRRIYIVDVGSMELLHSFTPRQEGQEGESPPHEPPITKLYTSSNDDWLAAI 600

Query:   539 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL 598
             NCFGD+Y+FNLE QRQHWFISRL+GASV AAGF P++NNV++I+TSSNQV+  DVEA++L
Sbjct:   601 NCFGDIYVFNLETQRQHWFISRLDGASVAAAGFHPRDNNVIVISTSSNQVFALDVEAREL 660

Query:   599 GEWSMQHTFVLPRRYQEFPGEVIGLXXXXXXXXXXVIIYSARAMCVIDFGRPVDPDDETD 658
              +WS+  TF LP+ YQ FPGEV+GL          VIIYS+RA C+I+FG+P + D++TD
Sbjct:   661 SKWSLLQTFCLPKSYQNFPGEVVGLSFSPSPCSSSVIIYSSRAKCLIEFGKPAEQDEDTD 720

Query:   659 MVSGQGSALR-KIASTPI---NGRLKRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHL 714
                     L  K+AS  +   NG  KR+L + Q ES K + RK FE    + PVL++ HL
Sbjct:   721 TPCNLSEKLEGKLASISMKLGNGAQKRRLEEYQKES-KSNKRKKFEMVTSKHPVLYLRHL 779

Query:   715 SKSSMLIIDKPWLEVVKTFDA-PVHRHIYGT 744
             SKS++L+I+KPW+EV+K  D  PVHRHI+GT
Sbjct:   780 SKSAILVIEKPWMEVIKNLDTQPVHRHIFGT 810

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q969X6 CIRH1A "Cirhin" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 2.0e-44, Sum P(4) = 2.0e-44
 Identities = 65/192 (33%), Positives = 106/192 (55%)

Query:    99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
             ++ + C+DG V++++IT  D++ + R+  R   R+LS++W   G  + +GS D YI  +D
Sbjct:   115 QLLVGCEDGSVKLFQITP-DKIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFD 172

Query:   159 AKLGYEIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH 217
              K G  ++++ V    +G     CI W +  L  GT++S DS G VQFWDS  GTL+++H
Sbjct:   173 VKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSH 232

Query:   218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 277
                  DV ++A A   +      ++G V  ++     + P    +SSE  K+W+     +
Sbjct:   233 LIANADVQSIAVADQEDSFVVGTAEGTVFHFQ-----LVPVTS-NSSE--KQWVRTKPFQ 284

Query:   278 AHTHDVRALTVA 289
              HTHDVR  TVA
Sbjct:   285 HHTHDVR--TVA 294

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|Q5R994 DKFZp459B1739 "Putative uncharacterized protein DKFZp459B1739" [Pongo abelii (taxid:9601)]

 Score = 277 (102.6 bits), Expect = 3.7e-44, Sum P(4) = 3.7e-44
 Identities = 63/192 (32%), Positives = 108/192 (56%)

Query:    99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
             ++ + C+DG V++++IT  D++ + R+  R   R+LS++W + G  + +GS D YI  +D
Sbjct:   115 QLLVGCEDGSVKLFQITP-DKIQFERNFDRQKSRILSLSWHSSGTHIAAGSID-YISVFD 172

Query:   159 AKLGYEIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH 217
              K G  ++++ V    +G+    CI W +  L  GT++S DS G VQFWDS  GTL+++H
Sbjct:   173 VKSGSAVHKMIVDRQYMGASKRKCIVWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKSH 232

Query:   218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 277
                  DV ++A A   +      ++G V  ++     + P   ++S+   K+W+     +
Sbjct:   233 LIANADVQSIAVADQEDSFVVGTAEGTVFHFQ-----LVP---VTSNSNEKQWVRTKPFQ 284

Query:   278 AHTHDVRALTVA 289
              HTHDVR  TVA
Sbjct:   285 HHTHDVR--TVA 294

GO:0005730 "nucleolus" evidence=ISS

ZFIN|ZDB-GENE-040426-2466 cirh1a "cirrhosis, autosomal recessive 1A (cirhin)" [Danio rerio (taxid:7955)]

 Score = 290 (107.1 bits), Expect = 2.9e-41, Sum P(4) = 2.9e-41
 Identities = 70/229 (30%), Positives = 126/229 (55%)

Query:   100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA 159
             +A+ C+DG V+++ +T+ D++ + R+L R  GR++S++W   G+ + +G  D  I+ ++ 
Sbjct:   115 LAVGCEDGTVKLFEVTE-DKIQFERNLDRQKGRIISLSWHPSGSKIAAGMMD-MIQVFNV 172

Query:   160 KLGYEIYRITVGLG-GLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS 218
             + G+  +RI V  G G   G E  +WS++ L  GT++S DS G V+ W    GTL+++H+
Sbjct:   173 ETGHSKHRILVDRGYGTSRGKECVVWSVVYLSDGTIISGDSVGMVKMWRDDTGTLIKSHN 232

Query:   219 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA 278
               K DV +L+ + + + + +  S+G V+ ++     +  N+        K W+   + R 
Sbjct:   233 ITKSDVLSLSVSQNEDSIVAGTSEGFVVQFQFLSMVLENNE--------KDWVRTRTFRN 284

Query:   279 HTHDVRA---LTVAVPISRED------PL-PEDKVKRSRGREKPIDFSY 317
             HTHDVRA   +T AV     D      PL  + +VK S  + + I F +
Sbjct:   285 HTHDVRAVAEITTAVVSGGMDTQLVVRPLLDKHEVKSSASKLRKIQFPH 333

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BC40 CIRH1A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 5.1e-40, Sum P(4) = 5.1e-40
 Identities = 65/191 (34%), Positives = 104/191 (54%)

Query:    99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
             ++ + C+DG V++++IT  D++ + R+  R   R+LS++W   G  + +GS D YI  +D
Sbjct:   115 QLLVGCEDGSVKLFQITP-DKIQFERNFDRQKSRILSLSWHPAGTHVAAGSID-YISVFD 172

Query:   159 AK-LGYEIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQA 216
             +K  G  I ++ V    +G     CI W +  L  GT++S DS G VQ WDS  GTL++ 
Sbjct:   173 SKSAGSAIGKMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQIWDSATGTLVKN 232

Query:   217 HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK-ASCESIGPNDGLSSSEVIKKWIYVGS 275
             H     DV ++A +P  +      ++G V  ++  S  S       SSSE  K+W+    
Sbjct:   233 HLVSNADVQSIAVSPQEDSFVVGTAEGTVFHFQLVSVTS-------SSSE--KQWVRTKP 283

Query:   276 VRAHTHDVRAL 286
              + HTHDVRA+
Sbjct:   284 FQHHTHDVRAV 294

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

POMBASE|SPBC19F5.02c utp4 "U3 snoRNP protein Utp4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 232 (86.7 bits), Expect = 4.0e-31, Sum P(3) = 4.0e-31
 Identities = 59/194 (30%), Positives = 98/194 (50%)

Query:    96 EDRRVALACDDGCVRIYRITDSDELI-YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYI 154
             E + +A+ CDDG   ++ I+    +I + R L R + R+LS+ +    +++  G +DG I
Sbjct:   121 ETKTLAVGCDDGSCVLFDISGGPGVIEFKRVLMRQTSRILSLDFQTKDHLV-GGCADGVI 179

Query:   155 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLL 214
             + WD           + +     G    IW++ SLR GT+VSADS+G+V+FW+ +  TL 
Sbjct:   180 KVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLS 239

Query:   215 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG 274
             Q+   H  D   L  + + + VFS+G D + I Y          +G       ++W+   
Sbjct:   240 QSFKLHLADALCLGVSANGDMVFSSGIDRKTIQYS--------REGGK-----REWVSNS 286

Query:   275 SVRAHTHDVRALTV 288
               R H+HDVR + V
Sbjct:   287 FRRFHSHDVRCMAV 300

GO:0005634 "nucleus" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0030490 "maturation of SSU-rRNA" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

GO:0034455 "t-UTP complex" evidence=ISO

GO:0045943 "positive regulation of transcription from RNA polymerase I promoter" evidence=ISO

RGD|1311341 Cirh1a "cirrhosis, autosomal recessive 1A (cirhin)" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
 Identities = 64/192 (33%), Positives = 102/192 (53%)

Query:    99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
             ++ + C+DG V+++ +T  D++ + R+  R   R+LS++W   G  + +GS D YI  +D
Sbjct:   115 QLLVGCEDGSVKLFEVTP-DKIQFARNFDRQKSRILSLSWHPAGTHVAAGSID-YISVFD 172

Query:   159 AKLGYEIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH 217
              K G    ++ +    LG     CI W +  L  GT++S DS G VQ WDS  GTL+++H
Sbjct:   173 VKSGSITRKMVLDRQHLGVTKSRCIVWGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSH 232

Query:   218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 277
                  DV ++A A   +      ++G V  ++    S+  N    SSE  K+W+     +
Sbjct:   233 LIANADVQSIAVADQEDSFVVGTAEGTVFHFQLV--SVTSN----SSE--KQWVRTKPFQ 284

Query:   278 AHTHDVRALTVA 289
              HTHDVR  TVA
Sbjct:   285 HHTHDVR--TVA 294

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1096573 Cirh1a "cirrhosis, autosomal recessive 1A (human)" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
 Identities = 62/189 (32%), Positives = 101/189 (53%)

Query:    99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
             ++ + C+DG V+++ +T  +++ + R+  R   R+LS+ W   G  + +GS D YI  +D
Sbjct:   115 QLLVGCEDGSVKLFEVTP-EKIQFARNFDRQKSRILSLCWHPAGTHVAAGSLD-YISVFD 172

Query:   159 AKLGYEIYRITVGLGGLGSGPELCI-WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH 217
              K G  I ++ +    LG     CI W +  L  GT++S DS G VQ WDS  GTL+++H
Sbjct:   173 VKSGSIIRKMVLDRQHLGVTKSRCIVWGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSH 232

Query:   218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR 277
                  DV ++A A   +      ++G V  ++    S+  N    SSE  K+W+     +
Sbjct:   233 LVANADVQSIAVADQEDSFVVGTAEGTVFHFQLV--SMTSN----SSE--KQWVRTKPFQ 284

Query:   278 AHTHDVRAL 286
              HTHDVRA+
Sbjct:   285 HHTHDVRAV 293

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

ASPGD|ASPL0000010371 AN3794 [Emericella nidulans (taxid:162425)]

 Score = 252 (93.8 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
 Identities = 65/193 (33%), Positives = 102/193 (52%)

Query:    98 RRVALACDDGCVRIYRITDSDELIYHRSL-PRVSG-RVLSVTWSADGNMLYSGSSDGYIR 155
             + +A  C DG + +    D D+L + R+L P     RVLSVT+  + N + +G +D  IR
Sbjct:   158 QHLAAGCADGSIVLLSTAD-DDLKFLRTLRPSTKKPRVLSVTFQ-NRNTIVAGYADSSIR 215

Query:   156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ 215
              +D + G  +  I++G G  G   EL +WS+  L  GT+VS DS G V+FWD+++ +L+Q
Sbjct:   216 VFDIRNGQLLRTISLGKGPTGGSKELLVWSVKCLPDGTIVSGDSAGEVRFWDAKNYSLIQ 275

Query:   216 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS 275
                 H  D   +A +     V S G+D + ++Y+   +  G     SS     +W+ V  
Sbjct:   276 RLQGHLADTLDVAVSADGETVVSGGADQRTVVYR---KKAGEKGDKSS-----RWVEVTH 327

Query:   276 VRAHTHDVRALTV 288
              R HTHDV+   V
Sbjct:   328 RRYHTHDVKTFAV 340

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	744
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
cd00216	434	cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 18/170 (10%)

Query: 86  SDELHEQSVVE------DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS 139
           + + H   V +         +A    D  +R++ +   + +   R+L   +  V SV +S
Sbjct: 46  TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV---RTLTGHTSYVSSVAFS 102

Query: 140 ADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV-SAD 198
            DG +L S S D  I+ WD + G  +  +         G    + S+     GT V S+ 
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSS 154

Query: 199 STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
             G+++ WD R G  +   + H G+VN++A +P   ++ S+ SDG + L+
Sbjct: 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 12/154 (7%)

Query: 97  DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156
              VA +  DG ++++ +  + + +   +L   +G V SV +S DG  L S SSDG I+ 
Sbjct: 147 GTFVASSSQDGTIKLWDL-RTGKCV--ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Query: 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ 215
           WD   G  +  +         G E  + S+     G  L S    G+++ WD R G  +Q
Sbjct: 204 WDLSTGKCLGTLR--------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 216 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249
             S H   V +LA +P   R+ S  +DG + ++ 
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 75/261 (28%), Positives = 111/261 (42%), Gaps = 18/261 (6%)

Query: 8   LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 67
              SS+DG++  WDL   K    L      +  +A +P    L   + +    G   L D
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL---IASGSSDGTIRLWD 227

Query: 68  KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP 127
            S       T    +DS               +A    DG +R++ +  S  L+   S  
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSSFSPDG----SLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL- 186
             S  VLSV +S DG +L SGSSDG +R WD + G  +  +T+       G E  + SL 
Sbjct: 284 --SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL------KGHEGPVSSLS 335

Query: 187 LSLRCGTLVSADST-GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV 245
            S     LVS  S  G+++ WD R G  L+    H  +V +++ +P    V S  +DG V
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTV 394

Query: 246 ILYKASCESIGPNDGLSSSEV 266
            L+  S  S+  N    +S V
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRV 415

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 189
           +G V  V +S DG +L +GS DG I+ WD + G  +  +         G    +  + + 
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAAS 60

Query: 190 RCGT-LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
             GT L S  S  +++ WD   G  ++  + H   V+++A +P    + S+  D  + ++
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 288
                       + + + +       ++R HT  V ++  
Sbjct: 121 D-----------VETGKCLT------TLRGHTDWVNSVAF 143

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 66/252 (26%), Positives = 102/252 (40%), Gaps = 19/252 (7%)

Query: 5   GGRLFSSSIDGSVSEWDL-YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG 63
           G  L S S DG++  WDL    K    L+ +  S        S       + +S   G  
Sbjct: 77  GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136

Query: 64  YLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC--DDGCVRIYRITDSDELI 121
            L D S       T E  ++S +      +   D ++  +    DG ++++ +     L 
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSL----AFSPDGKLLASGSSLDGTIKLWDLRTGKPL- 191

Query: 122 YHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
              +L   +  V S+ +S DG  ++ SGSSDG IR WD   G  +           SG  
Sbjct: 192 --STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-------SGHS 242

Query: 181 LCIWSLLSLRCGTLVSADSTGSVQFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFST 239
             + S  S     L S  S G+++ WD R   +LL+  S H   V ++A +P    + S 
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 240 GSDGQVILYKAS 251
            SDG V L+   
Sbjct: 303 SSDGTVRLWDLE 314

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 4e-08
 Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 19/265 (7%)

Query: 7   RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLN 66
            + S S DG++  WDL   K      S        + +P  S L  A  +SD     +  
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLL--ASGSSDGTIRLW-- 268

Query: 67  DKSNDSDDHETSESENDSDSDELHEQSVVED-RRVALACDDGCVRIYRITDSDELIYHRS 125
               D     +        S  +   +   D + +A    DG VR++ + ++ +L+   +
Sbjct: 269 ----DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL-ETGKLLSSLT 323

Query: 126 LPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184
           L    G V S+++S DG++L SG S DG IR WD + G  +  +       G    L + 
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE------GHSNVLSVS 377

Query: 185 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ 244
                R  +  S D  G+V+ WD   G+LL+    H   V +L  +P    + S  SD  
Sbjct: 378 FSPDGRVVSSGSTD--GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435

Query: 245 VILYKASCESIGPNDGLSSSEVIKK 269
           + L+         +       +  K
Sbjct: 436 IRLWDLKTSLKSVSFSPDGKVLASK 460

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 5   GGRLFSSSIDGSVSEWDL--YDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN 62
           G  L S S DG+V  WDL    L   + L+  +  +  ++ +P  S L+   ++   I  
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 63  GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY 122
             L            S   + S S +         R V+    DG VR++   D      
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSVSFSPD--------GRVVSSGSTDGTVRLW---DLSTGSL 404

Query: 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK 160
            R+L   + RV S+ +S DG  L SGSSD  IR WD K
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 14/268 (5%)

Query: 3   LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN 62
           L         +               ++L+  + SI  +A +P    L     +SD  G 
Sbjct: 33  LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELL--LSGSSD--GT 88

Query: 63  GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD-DGCVRIYRITDSDELI 121
             L D  N     ++ E  +DS   +L   S   +  +  +   DG V+++ ++   +LI
Sbjct: 89  IKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI 148

Query: 122 YHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
             R+L   S  V S+ +S DG +L SGSS DG I+ WD + G  +  +       G    
Sbjct: 149 --RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA------GHTDP 200

Query: 181 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG 240
           +   +        + S  S G+++ WD   G LL++      D    + +P  + + S  
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260

Query: 241 SDGQVILYKASCESIGPNDGLSSSEVIK 268
           SDG + L+     S         S  + 
Sbjct: 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
            ++L   +G V SV +S DG  L SGS DG I+ WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 55/155 (35%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
           G +L SSS DG++  WDL   K    L+  +  +  +A +P                   
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP------------------- 229

Query: 65  LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD-DGCVRIYRITDSDELIYH 123
                                           D  +  +   DG +R++ +   + +   
Sbjct: 230 --------------------------------DGYLLASGSEDGTIRVWDLRTGECV--- 254

Query: 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
           ++L   +  V S+ WS DG  L SGS+DG IR WD
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
           +G V SV +S DGN+L SGS DG +R WD
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 4/185 (2%)

Query: 69  SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR 128
           ++ +     S+    S+         +     + +       +     S   +    L  
Sbjct: 4   NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63

Query: 129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS 188
               + S+ +S DG +L SGSSDG I+ WD   G ++ +   GL    S       S   
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL--HDSSVSKLALSSPD 121

Query: 189 LRCGTLVSADSTGSVQFWD-SRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVI 246
                L S+   G+V+ WD S  G L++    H   V +LA +P    + S  S DG + 
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 247 LYKAS 251
           L+   
Sbjct: 182 LWDLR 186

Length = 466

>gnl|CDD|199833 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases and related proteins

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 93  SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG 152
           S   DR +     +G +          +     L  + G  LS      GN+++ G+SDG
Sbjct: 309 SYDPDRELFYVPANGRIMALDPVTGVVVWEKSELHPLLGGPLSTA----GNLVFVGTSDG 364

Query: 153 YIRSWDAKLGYEIYRITVGLGGLG 176
           Y+++++A  G ++++  V  G   
Sbjct: 365 YLKAYNADTGEKLWQQKVPSGFQA 388

This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ. Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	744
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG1963	792	consensus WD40 repeat protein [General function pr	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.7
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
KOG2315	566	consensus Predicted translation initiation factor	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG1334	559	consensus WD40 repeat protein [General function pr	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
COG4946	668	Uncharacterized protein related to the periplasmic	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG2315	566	consensus Predicted translation initiation factor	99.61
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.49
PRK04922	433	tolB translocation protein TolB; Provisional	99.48
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
COG4946	668	Uncharacterized protein related to the periplasmic	99.47
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.47
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
PRK04922	433	tolB translocation protein TolB; Provisional	99.43
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.43
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.42
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
KOG2314	698	consensus Translation initiation factor 3, subunit	99.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.41
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.4
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.4
KOG2314	698	consensus Translation initiation factor 3, subunit	99.38
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.33
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.33
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.28
PRK01029	428	tolB translocation protein TolB; Provisional	99.28
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.24
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.2
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.14
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.1
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.04
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.91
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.84
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.84
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.79
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.76
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.74
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.74
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.73
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.68
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.67
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.66
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.65
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.63
KOG2695	425	consensus WD40 repeat protein [General function pr	98.63
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.58
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.55
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.55
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.54
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.49
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.42
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.41
KOG3621	726	consensus WD40 repeat-containing protein [General	98.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.36
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.35
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.34
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.29
KOG3621	726	consensus WD40 repeat-containing protein [General	98.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.26
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.23
PRK02888	635	nitrous-oxide reductase; Validated	98.22
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.16
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.15
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.11
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.06
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.02
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.97
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.92
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.91
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.82
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.78
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.78
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.73
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.73
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.72
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.72
PRK02888	635	nitrous-oxide reductase; Validated	97.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.7
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.68
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.62
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.62
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.62
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.61
COG3391	381	Uncharacterized conserved protein [Function unknow	97.56
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.55
COG3391	381	Uncharacterized conserved protein [Function unknow	97.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.42
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.34
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.32
PRK13616	591	lipoprotein LpqB; Provisional	97.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.31
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.28
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.27
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.23
PRK13616	591	lipoprotein LpqB; Provisional	97.16
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.04
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.02
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.79
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.79
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.78
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.77
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.69
KOG2395	644	consensus Protein involved in vacuole import and d	96.66
KOG2395	644	consensus Protein involved in vacuole import and d	96.63
KOG2444	238	consensus WD40 repeat protein [General function pr	96.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.6
KOG2444	238	consensus WD40 repeat protein [General function pr	96.59
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.53
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.47
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.44
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.41
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.4
PHA02713	557	hypothetical protein; Provisional	96.31
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.26
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.23
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.16
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.88
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.83
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.78
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	95.77
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.67
COG5276	370	Uncharacterized conserved protein [Function unknow	95.67
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.4
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.36
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.23
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	95.16
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.14
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.11
PHA03098	534	kelch-like protein; Provisional	95.1
PRK13684	334	Ycf48-like protein; Provisional	95.01
PHA02713	557	hypothetical protein; Provisional	94.84
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.61
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.53
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.5
PRK13684	334	Ycf48-like protein; Provisional	94.47
PHA03098	534	kelch-like protein; Provisional	94.45
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.42
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.15
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.05
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.03
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.02
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.98
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.93
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.82
COG4590	733	ABC-type uncharacterized transport system, permeas	93.8
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.55
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.51
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.45
PRK10115	686	protease 2; Provisional	93.45
KOG2247	615	consensus WD40 repeat-containing protein [General	93.37
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.16
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.16
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.03
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.93
PHA02790	480	Kelch-like protein; Provisional	92.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.34
PRK10115	686	protease 2; Provisional	92.21
COG5276	370	Uncharacterized conserved protein [Function unknow	91.97
PHA02790	480	Kelch-like protein; Provisional	91.92
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.91
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.7
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.3
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.08
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.05
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.61
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.41
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.97
COG4590	733	ABC-type uncharacterized transport system, permeas	89.75
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.74
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.69
COG5167	776	VID27 Protein involved in vacuole import and degra	89.63
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.22
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.01
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.64
KOG2247	615	consensus WD40 repeat-containing protein [General	88.54
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.51
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.38
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.47
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.39
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.38
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.12
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.83
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.71
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.51
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.31
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	86.23
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.85
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.24
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	84.72
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.19
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.15
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.07
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.02
COG1770	682	PtrB Protease II [Amino acid transport and metabol	83.85
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.79
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.04
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	82.69
COG5167	776	VID27 Protein involved in vacuole import and degra	81.81
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	81.52
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	81.27
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	81.17
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.0
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	80.29
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.29

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-70  Score=529.51  Aligned_cols=606  Identities=34%  Similarity=0.569  Sum_probs=500.3

Q ss_pred             CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      +++||++.+.+|.|.+||+.++++++.++...+.||+|+.+|.+                                    
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~------------------------------------  122 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN------------------------------------  122 (691)
T ss_pred             cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc------------------------------------
Confidence            58999999999999999999999999999999999999999998                                    


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                                    ..+++||+||.+..+++. .+.+.+.+.|...+++|.+++|+|++..|++|+.||.|++||+.++.
T Consensus       123 --------------~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  123 --------------TILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ  187 (691)
T ss_pred             --------------ceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCc
Confidence                          689999999977777775 67888889999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG  243 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg  243 (744)
                      .++..+....+..+.....||++.|..+++|++|++.|+|++||...|++++++..|.+.|.||+..+++++++++|.|+
T Consensus       188 t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  188 TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             eEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence            99876666666666788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccC
Q 004581          244 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL  323 (744)
Q Consensus       244 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  323 (744)
                      .|..|...+..             ..|+....+..|.++|++++..                                  
T Consensus       268 ~ii~~~~~~~~-------------~~wv~~~~r~~h~hdvrs~av~----------------------------------  300 (691)
T KOG2048|consen  268 KIIQYSLTTNK-------------SEWVINSRRDLHAHDVRSMAVI----------------------------------  300 (691)
T ss_pred             ceEEEEecCCc-------------cceeeeccccCCcccceeeeee----------------------------------
Confidence            99999988765             3498888999999999999984                                  


Q ss_pred             CCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe-CCeEEEEEeeccCCcccCCCCC
Q 004581          324 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY-SCRLDILSVRLENNVESRSSSG  402 (744)
Q Consensus       324 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~i~i~~~~~~~~~~~~~~~~  402 (744)
                       ...+++|+.|..+.+-..+.+...........+..      ..+...|..+++... ...+.+|.+.....       .
T Consensus       301 -~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~------~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~-------~  366 (691)
T KOG2048|consen  301 -ENALISGGRDFTLAICSSREFKNMDHRQKNLFPAS------DRVSVAPENRLLVLWKAHGVDLWRLGSVIL-------Q  366 (691)
T ss_pred             -cceEEecceeeEEEEccccccCchhhhcccccccc------ceeecCccceEEEEeccccccceeccCccc-------c
Confidence             12799999999999988876443322211111111      123344555555544 67889999886642       2


Q ss_pred             CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE
Q 004581          403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL  482 (744)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l  482 (744)
                      |+.+...+.++..+....|.|.++||+|++||+++-..+++|.+.. +..+++  ......+.....++.+.|+-|++.+
T Consensus       367 g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~-~~~vk~--~~v~~~~~~~~~a~~i~ftid~~k~  443 (691)
T KOG2048|consen  367 GEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQP-DPNVKV--INVDDVPLALLDASAISFTIDKNKL  443 (691)
T ss_pred             cccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEecc-CcceeE--EEeccchhhhccceeeEEEecCceE
Confidence            4567788999999999999999999999999999999999999987 334443  2223344444478899999999998


Q ss_pred             EEEe-CCCcEEEEEccCCc--eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEe
Q 004581          483 IIAG-HDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS  559 (744)
Q Consensus       483 ~~~~-~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~  559 (744)
                      +..+ ....+.++++++..  .+..+..         .+....|+.+..||||+|||+.+.+|.|.+|++++.+..+...
T Consensus       444 ~~~s~~~~~le~~el~~ps~kel~~~~~---------~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~  514 (691)
T KOG2048|consen  444 FLVSKNIFSLEEFELETPSFKELKSIQS---------QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV  514 (691)
T ss_pred             EEEecccceeEEEEecCcchhhhhcccc---------ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh
Confidence            8887 67788888886543  3333322         1256789999999999999999999999999999999887776


Q ss_pred             cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcC
Q 004581          560 RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA  639 (744)
Q Consensus       560 ~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~  639 (744)
                      ... ..+++++|+|.+.+.|+++.++++++.||++..+++.|++.++..+|+.++.....+.++.|+|. ++.++|+|++
T Consensus       515 rln-~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~-n~s~~~~~~a  592 (691)
T KOG2048|consen  515 RLN-IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPK-NSSRFIVYDA  592 (691)
T ss_pred             ccC-cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCC-CccEEEEEcC
Confidence            655 69999999976889999999999999999999999999999999999999999999999999976 8999999999


Q ss_pred             ceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCcccccccc-ccccccccccccCCcceEEEecccceEEeeecCCCe
Q 004581          640 RAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRK-LRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSS  718 (744)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  718 (744)
                      .|+|.+|+++|+|.+++..+..     +++.    .+++.-|. ..+-.-.+..++...+|++.++|+|+||++.++++|
T Consensus       593 ~w~~~id~~~~lp~~~~~~~~~-----~~kt----~egn~~~~~~~g~~l~~~~~~~~~~f~~t~~y~pllfv~~ls~ne  663 (691)
T KOG2048|consen  593 HWSCLIDFSLPLPSDEDGPLKA-----LKKT----REGNLTRLLVNGNRLREYGEENGDGFKITKKYRPLLFVGLLSPNE  663 (691)
T ss_pred             cEEEEEecCCCCCchhhccccc-----CCcc----cccchhhhhcccccchhhcccCCcccceeccccceeeecccCCcc
Confidence            9999999999998777432221     1110    00111110 000000123455677899899999999999999999


Q ss_pred             EEEEec-ChHHHHhcCCC-CcccccCCC
Q 004581          719 MLIIDK-PWLEVVKTFDA-PVHRHIYGT  744 (744)
Q Consensus       719 l~vve~-p~~~~~~~lp~-~~~~~~~g~  744 (744)
                      |++||| |+.++.+++|| ||+||+||+
T Consensus       664 l~~ver~pl~d~~~~~p~~~f~~kKFG~  691 (691)
T KOG2048|consen  664 LVNVERVPLEDTGKSLPPTPFKRKKFGT  691 (691)
T ss_pred             eEEEEecchHHhhccCCCCcceecccCC
Confidence            999999 99999999998 899999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-55  Score=395.25  Aligned_cols=367  Identities=19%  Similarity=0.269  Sum_probs=296.8

Q ss_pred             ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      ++-..+.||.++|-|++|+|+|                                                  ..||+|+.
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g--------------------------------------------------~~l~tGsG  135 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTG--------------------------------------------------SRLVTGSG  135 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCC--------------------------------------------------ceEEecCC
Confidence            3445688999999999999999                                                  69999999


Q ss_pred             CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS  185 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (744)
                      |.++|+||+.+..++   .+.++|...|.|++|+|||+.||+|+.||+|++||.++|+++.+-..       +|...|.+
T Consensus       136 D~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~-------gH~K~It~  205 (480)
T KOG0271|consen  136 DTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR-------GHKKWITA  205 (480)
T ss_pred             CceEEeeccCCCCcc---eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc-------CcccceeE
Confidence            999999999987777   89999999999999999999999999999999999999988755432       89999999


Q ss_pred             EEEecC-----C-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCC
Q 004581          186 LLSLRC-----G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND  259 (744)
Q Consensus       186 ~~~~~~-----~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  259 (744)
                      ++|.|-     . +|++++.||.|+|||+..++++..+.+|+.+|+|+.|--+| +|++|+.|++|++|+...+.+    
T Consensus       206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~----  280 (480)
T KOG0271|consen  206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL----  280 (480)
T ss_pred             EeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH----
Confidence            999873     2 79999999999999999999999999999999999998765 899999999999999988773    


Q ss_pred             CCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEE
Q 004581          260 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA  339 (744)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~  339 (744)
                                   +..+.+|.+.|+.++++.+.                                  .|-+|..|.+=+-
T Consensus       281 -------------~r~lkGHahwvN~lalsTdy----------------------------------~LRtgaf~~t~~~  313 (480)
T KOG0271|consen  281 -------------CRELKGHAHWVNHLALSTDY----------------------------------VLRTGAFDHTGRK  313 (480)
T ss_pred             -------------HHhhcccchheeeeeccchh----------------------------------hhhcccccccccc
Confidence                         78899999999999997322                                  1222222221111


Q ss_pred             EecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCC
Q 004581          340 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR  419 (744)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (744)
                      ....+..+......                                 |                               .
T Consensus       314 ~~~~se~~~~Al~r---------------------------------Y-------------------------------~  329 (480)
T KOG0271|consen  314 PKSFSEEQKKALER---------------------------------Y-------------------------------E  329 (480)
T ss_pred             CCChHHHHHHHHHH---------------------------------H-------------------------------H
Confidence            11100000000000                                 0                               0


Q ss_pred             CeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581          420 KIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       420 ~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~  498 (744)
                      .+    .-..+..+++ ++|.++.+|+...  ....+     .++.+|..-|+.+.||||++++|+++-|..|++||-.+
T Consensus       330 ~~----~~~~~erlVSgsDd~tlflW~p~~--~kkpi-----~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  330 AV----LKDSGERLVSGSDDFTLFLWNPFK--SKKPI-----TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             Hh----hccCcceeEEecCCceEEEecccc--cccch-----hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence            00    0001122333 3445555555432  11111     45678888999999999999999999999999999999


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV  578 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  578 (744)
                      |+.+.+|.+           |-..|..++||.|.++|++++.|.++++|++.+.+....+++ |...|.++.|+| ||..
T Consensus       399 Gk~lasfRG-----------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~DEVf~vDwsp-DG~r  465 (480)
T KOG0271|consen  399 GKFLASFRG-----------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-HADEVFAVDWSP-DGQR  465 (480)
T ss_pred             cchhhhhhh-----------ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-CCceEEEEEecC-CCce
Confidence            999999999           999999999999999999999999999999999999888877 678999999999 9999


Q ss_pred             EEEEecCCeEEEEE
Q 004581          579 LIITTSSNQVYVFD  592 (744)
Q Consensus       579 l~~~~~d~~v~vwd  592 (744)
                      +++++.|..+++|.
T Consensus       466 V~sggkdkv~~lw~  479 (480)
T KOG0271|consen  466 VASGGKDKVLRLWR  479 (480)
T ss_pred             eecCCCceEEEeec
Confidence            99999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.8e-52  Score=390.27  Aligned_cols=481  Identities=16%  Similarity=0.218  Sum_probs=375.9

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccC-Cc-eeEEeeccCcceeEEeeccCCCccccccccccccCCc-cccCCCC--CCCCC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYD-LK-QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG-YLNDKSN--DSDDH   75 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~-~~-~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~   75 (744)
                      ++|.|-++|+|...|+|+|||... .. +..+++...++|..++|++|+++++..+.....-+.. +|+.-+.  ...++
T Consensus        67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~Gh  146 (603)
T KOG0318|consen   67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGH  146 (603)
T ss_pred             eCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeecc
Confidence            478899999999999999999865 23 3346888899999999999999998876655554443 3443331  11111


Q ss_pred             cCccCCCCCCccccccccc--ccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCe
Q 004581           76 ETSESENDSDSDELHEQSV--VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY  153 (744)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~  153 (744)
                      ....          ....+  ...=++++|++|++|.+|+   |.++.+..+++.|..-|.|+.|+|||.++||++.||.
T Consensus       147 Sr~i----------ns~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  147 SRRI----------NSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ceeE----------eeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence            1111          00001  1113899999999999997   6688888999999999999999999999999999999


Q ss_pred             EEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEE----------------
Q 004581          154 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA----------------  216 (744)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~----------------  216 (744)
                      |.+||=.+|+.+..+..     ...|.+.|++++|+||+ ++++++.|.+++|||+.+.+++++                
T Consensus       214 i~iyDGktge~vg~l~~-----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW  288 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELED-----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW  288 (603)
T ss_pred             EEEEcCCCccEEEEecC-----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence            99999999999999874     22799999999999999 999999999999999987655433                


Q ss_pred             ---------------------------eeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccce
Q 004581          217 ---------------------------HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKK  269 (744)
Q Consensus       217 ---------------------------~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  269 (744)
                                                 +.+|...|++++.+|++.+|++|+.||.|.-|+...+..              
T Consensus       289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~--------------  354 (603)
T KOG0318|consen  289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS--------------  354 (603)
T ss_pred             eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc--------------
Confidence                                       567999999999999999999999999999999998762              


Q ss_pred             EEEEeee--eeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581          270 WIYVGSV--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK  347 (744)
Q Consensus       270 ~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~  347 (744)
                          ..+  .+|+..|.+++.+          +                        ...+++.+.|.++++.++.....
T Consensus       355 ----~~~~g~~h~nqI~~~~~~----------~------------------------~~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  355 ----DRLAGKGHTNQIKGMAAS----------E------------------------SGELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             ----cccccccccceEEEEeec----------C------------------------CCcEEEEecCCeEEEEecccCcc
Confidence                223  6799999999874          1                        12799999999999998864322


Q ss_pred             CCCcccCCCCCCCccccccceeecCCe-EEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581          348 FSPHEICPAPQRVPIHLVHNTIFSHTS-LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI  426 (744)
Q Consensus       348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  426 (744)
                      ..... ....     ....+++..+++ ..+++....+.+.+-..                 .+..+.  -.....++++
T Consensus       397 t~~~~-~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~-----------------~~~~~~--~~y~~s~vAv  451 (603)
T KOG0318|consen  397 TKSEV-VKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQT-----------------KVSSIP--IGYESSAVAV  451 (603)
T ss_pred             cccce-eecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCC-----------------cceeec--cccccceEEE
Confidence            11110 0011     122266777764 55555555555544211                 122222  2366789999


Q ss_pred             cCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581          427 SNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF  505 (744)
Q Consensus       427 s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~  505 (744)
                      +|+++.+|+| .|+.+++|.+....  .    .+...+..|..++++++||||+.+||++...+.+.+||+++.+.....
T Consensus       452 ~~~~~~vaVGG~Dgkvhvysl~g~~--l----~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~  525 (603)
T KOG0318|consen  452 SPDGSEVAVGGQDGKVHVYSLSGDE--L----KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR  525 (603)
T ss_pred             cCCCCEEEEecccceEEEEEecCCc--c----cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce
Confidence            9999999995 99999999997521  1    222456677889999999999999999999999999999887763332


Q ss_pred             ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecC
Q 004581          506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS  585 (744)
Q Consensus       506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d  585 (744)
                      ..          .|...|.+++|||+.+++|+|+.|..|.||+++.......++..|...|+.+.|-  |...|++++.|
T Consensus       526 w~----------FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl--de~tvvSsG~D  593 (603)
T KOG0318|consen  526 WA----------FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL--DESTVVSSGQD  593 (603)
T ss_pred             ee----------eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe--cCceEEeccCc
Confidence            22          2899999999999999999999999999999999888888888898889999998  57889999999


Q ss_pred             CeEEEEEcC
Q 004581          586 NQVYVFDVE  594 (744)
Q Consensus       586 ~~v~vwd~~  594 (744)
                      ..|++|++.
T Consensus       594 a~iK~W~v~  602 (603)
T KOG0318|consen  594 ANIKVWNVT  602 (603)
T ss_pred             ceeEEeccc
Confidence            999999975

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-52  Score=408.62  Aligned_cols=508  Identities=16%  Similarity=0.142  Sum_probs=400.6

Q ss_pred             CCCCCeeEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      .+++.+|++++....+++|++++++.++..+. |.++|.-|+|+|.+                                 
T Consensus        71 ~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g---------------------------------  117 (775)
T KOG0319|consen   71 TPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG---------------------------------  117 (775)
T ss_pred             cCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC---------------------------------
Confidence            56788899999999999999999999999998 99999999999999                                 


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC--EEEEEeCCCeEEEEE
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN--MLYSGSSDGYIRSWD  158 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~--~l~t~~~dg~i~vwd  158 (744)
                                       ..||+|+.||.|++||+..+...   +.|+||.+.|.++.|+|+-.  .|++|..|+++++||
T Consensus       118 -----------------~LlAtggaD~~v~VWdi~~~~~t---h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn  177 (775)
T KOG0319|consen  118 -----------------TLLATGGADGRVKVWDIKNGYCT---HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN  177 (775)
T ss_pred             -----------------ceEEeccccceEEEEEeeCCEEE---EEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence                             58999999999999999866666   99999999999999999765  589999999999999


Q ss_pred             ccCCce-EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC----
Q 004581          159 AKLGYE-IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS----  232 (744)
Q Consensus       159 ~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----  232 (744)
                      +++... +..+.        .|.+.|++++|++|+ .+++++.|..+.+||+.+.+...++.. ...+-++.+.++    
T Consensus       178 l~~~~tcl~~~~--------~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~  248 (775)
T KOG0319|consen  178 LNDKRTCLHTMI--------LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGG  248 (775)
T ss_pred             cccCchHHHHHH--------hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCC
Confidence            986655 55565        699999999999999 899999999999999987777777664 346677777776    


Q ss_pred             -CCEEEeecCCCeEEEEEcccCcCCCCCCCC---------ccccc-----------------ceEEEEeeeeeccCccee
Q 004581          233 -HNRVFSTGSDGQVILYKASCESIGPNDGLS---------SSEVI-----------------KKWIYVGSVRAHTHDVRA  285 (744)
Q Consensus       233 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~~~~~-----------------~~~~~~~~~~~h~~~v~~  285 (744)
                       +.+++++|.+|.+++||..+..........         .....                 ........+-+....|..
T Consensus       249 ~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D  328 (775)
T KOG0319|consen  249 KGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD  328 (775)
T ss_pred             cceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence             679999999999999999886541110000         00000                 001111222233344444


Q ss_pred             eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581          286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV  365 (744)
Q Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v  365 (744)
                      ++|-                                .+..++|+.++..+.+++|+..+..-.        -...|...+
T Consensus       329 m~~l--------------------------------G~e~~~laVATNs~~lr~y~~~~~~c~--------ii~GH~e~v  368 (775)
T KOG0319|consen  329 MKFL--------------------------------GPEESHLAVATNSPELRLYTLPTSYCQ--------IIPGHTEAV  368 (775)
T ss_pred             eeec--------------------------------CCccceEEEEeCCCceEEEecCCCceE--------EEeCchhhe
Confidence            4442                                344569999999999999987664322        223456788


Q ss_pred             cceeecCCeEEEEEeC--CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEE-EcCCce
Q 004581          366 HNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAY-SDHVKP  441 (744)
Q Consensus       366 ~~~~~s~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~la~-~~~~~v  441 (744)
                      .++....+|.++++++  .++.+|+++.....            ..+......|...|.+++++..+ .++++ +.|.++
T Consensus       369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl  436 (775)
T KOG0319|consen  369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSK------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL  436 (775)
T ss_pred             eeeeecccCcEEEEecCCceEEEEEecCCcch------------hhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence            8888777787888775  49999999443322            13334446778899999998877 55666 699999


Q ss_pred             EEEEeecCCCCCceEEee-eccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 004581          442 SLFELKKGKVGQGEWIIN-KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE  520 (744)
Q Consensus       442 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  520 (744)
                      ++|.+...........+. ......|...|++++++|+.+++|+|+.|.+.+||+++.+++..++.+           |.
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-----------H~  505 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-----------HT  505 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-----------Cc
Confidence            999997622221111111 123345777999999999999999999999999999999999999999           99


Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcccc
Q 004581          521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE  600 (744)
Q Consensus       521 ~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~  600 (744)
                      ..|.++.|+|..+.+|++|.|++|+||.+++..+..++.+ |...|..++|-. ++..|+++++||-+++|++++++   
T Consensus       506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~-~~~qliS~~adGliKlWnikt~e---  580 (775)
T KOG0319|consen  506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNE---  580 (775)
T ss_pred             cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeee-CCcEEEeccCCCcEEEEeccchh---
Confidence            9999999999999999999999999999999999999976 678999999999 99999999999999999999996   


Q ss_pred             ccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCCCC
Q 004581          601 WSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPV  651 (744)
Q Consensus       601 ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~~  651 (744)
                              +...+..|++.|++++-+|++  + ++ +++.+.-+|.+.+..
T Consensus       581 --------C~~tlD~H~DrvWaL~~~~~~--~-~~-~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  581 --------CEMTLDAHNDRVWALSVSPLL--D-MF-VTGGGDGRIIFWKDV  619 (775)
T ss_pred             --------hhhhhhhccceeEEEeecCcc--c-ee-EecCCCeEEEEeecC
Confidence                    577899999999999999974  3 33 333333444444443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-51  Score=370.07  Aligned_cols=316  Identities=20%  Similarity=0.269  Sum_probs=284.0

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      ++|.|.+|++|+.|.++++||+.|..+..+.++|...|.|++|+|||                                 
T Consensus       123 fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg---------------------------------  169 (480)
T KOG0271|consen  123 FSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG---------------------------------  169 (480)
T ss_pred             ecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc---------------------------------
Confidence            46788899999999999999999999999999999999999999999                                 


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-----CCCEEEEEeCCCeEE
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-----DGNMLYSGSSDGYIR  155 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-----dg~~l~t~~~dg~i~  155 (744)
                                       ..||+|+.||.|++||..+++++-  +.|.+|...|++++|.|     ..++||+++.||+|+
T Consensus       170 -----------------k~iASG~~dg~I~lwdpktg~~~g--~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  170 -----------------KKIASGSKDGSIRLWDPKTGQQIG--RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             -----------------chhhccccCCeEEEecCCCCCccc--ccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence                             589999999999999998888765  89999999999999976     678999999999999


Q ss_pred             EEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEc-----
Q 004581          156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA-----  230 (744)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-----  230 (744)
                      |||+..+.++..+.        +|...|+|+.|--+|+|++|+.|++|++|+...|.+...+++|...|+.|+.+     
T Consensus       231 IWd~~~~~~~~~ls--------gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L  302 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLS--------GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL  302 (480)
T ss_pred             EEEccCceEEEEec--------cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence            99999999999998        89999999999999999999999999999999999999999999999999887     


Q ss_pred             ------CCC-------------------------CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581          231 ------PSH-------------------------NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH  279 (744)
Q Consensus       231 ------~~~-------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  279 (744)
                            |.+                         ..+++|+.|.++.+|+......                ++..+.+|
T Consensus       303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----------------pi~rmtgH  366 (480)
T KOG0271|consen  303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----------------PITRMTGH  366 (480)
T ss_pred             hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----------------chhhhhch
Confidence                  223                         3599999999999998765432                35567788


Q ss_pred             cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581          280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR  359 (744)
Q Consensus       280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  359 (744)
                      ..-|..+.|+         ||++                        ++++++.|.+|++|+.++.+             
T Consensus       367 q~lVn~V~fS---------Pd~r------------------------~IASaSFDkSVkLW~g~tGk-------------  400 (480)
T KOG0271|consen  367 QALVNHVSFS---------PDGR------------------------YIASASFDKSVKLWDGRTGK-------------  400 (480)
T ss_pred             hhheeeEEEC---------CCcc------------------------EEEEeecccceeeeeCCCcc-------------
Confidence            8888888887         7776                        88888888888888876422             


Q ss_pred             CccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 004581          360 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV  439 (744)
Q Consensus       360 ~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~  439 (744)
                                                                                                      
T Consensus       401 --------------------------------------------------------------------------------  400 (480)
T KOG0271|consen  401 --------------------------------------------------------------------------------  400 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581          440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS  519 (744)
Q Consensus       440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  519 (744)
                                    .+     ..+.+|...|..++||.|.++|++++.|.++++||+.+.++...+.+           |
T Consensus       401 --------------~l-----asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-----------h  450 (480)
T KOG0271|consen  401 --------------FL-----ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-----------H  450 (480)
T ss_pred             --------------hh-----hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-----------C
Confidence                          11     34567777999999999999999999999999999999999999998           9


Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       520 ~~~i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      ..+|.++.|||||+.+++|+.|..+++|.
T Consensus       451 ~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  451 ADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.7e-49  Score=383.19  Aligned_cols=454  Identities=17%  Similarity=0.228  Sum_probs=366.1

Q ss_pred             CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      .+-+..|++||.|+.|++||+..+.+.+.|+||++.|+++.|+|+-.+.                               
T Consensus       114 ~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~-------------------------------  162 (775)
T KOG0319|consen  114 DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW-------------------------------  162 (775)
T ss_pred             cCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh-------------------------------
Confidence            3556779999999999999999999999999999999999999998543                               


Q ss_pred             CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581           82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL  161 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~  161 (744)
                                       .|++|..|++|++||+.+...  +...+..|...|++++|++|+..+++++.|..+.|||+.+
T Consensus       163 -----------------lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~  223 (775)
T KOG0319|consen  163 -----------------LLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ  223 (775)
T ss_pred             -----------------heeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence                             799999999999999985444  3388999999999999999999999999999999999987


Q ss_pred             CceEEEEEecCCCCCCCCceeEEEEEEecC-----C-eEEEEcCCCCEEEEeCCCcceEEE-------------------
Q 004581          162 GYEIYRITVGLGGLGSGPELCIWSLLSLRC-----G-TLVSADSTGSVQFWDSRHGTLLQA-------------------  216 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~-~l~s~~~dg~i~vwd~~~~~~~~~-------------------  216 (744)
                      .+....+.         .-..+.++.+.++     + ++++.+.+|.+++||.++++++..                   
T Consensus       224 ~~~l~~lp---------~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~  294 (775)
T KOG0319|consen  224 YKKLKTLP---------LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS  294 (775)
T ss_pred             hhhhheec---------hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence            77776665         3445666667666     4 788888889999998876544321                   


Q ss_pred             ------------------------eeccccceeEEEEc-CCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEE
Q 004581          217 ------------------------HSFHKGDVNALAAA-PSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI  271 (744)
Q Consensus       217 ------------------------~~~h~~~v~~l~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  271 (744)
                                              +-|....|..++|- |+.++|++++..+.+++|+..+..                 
T Consensus       295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~-----------------  357 (775)
T KOG0319|consen  295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY-----------------  357 (775)
T ss_pred             ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc-----------------
Confidence                                    22344567777764 556788888888888888777655                 


Q ss_pred             EEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCc
Q 004581          272 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH  351 (744)
Q Consensus       272 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  351 (744)
                       ...+.+|+..|.++...         .                        .+.+|++|+.|.++++|.+++..   ..
T Consensus       358 -c~ii~GH~e~vlSL~~~---------~------------------------~g~llat~sKD~svilWr~~~~~---~~  400 (775)
T KOG0319|consen  358 -CQIIPGHTEAVLSLDVW---------S------------------------SGDLLATGSKDKSVILWRLNNNC---SK  400 (775)
T ss_pred             -eEEEeCchhheeeeeec---------c------------------------cCcEEEEecCCceEEEEEecCCc---ch
Confidence             45778999999999843         1                        22499999999999999884322   11


Q ss_pred             ccCCCCCCCccccccceeecCCeE-EEEE--eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC
Q 004581          352 EICPAPQRVPIHLVHNTIFSHTSL-LLVQ--YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN  428 (744)
Q Consensus       352 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  428 (744)
                      ..+......|.+.+.+++++..+. ++++  .+..+++|.+........       ............|...|.|++++|
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~~~~~~t~~aHdKdIN~Vaia~  473 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIVLTCRYTERAHDKDINCVAIAP  473 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cceehhhHHHHhhcccccceEecC
Confidence            222233445667888888876443 4444  456999999987332211       000111223467889999999999


Q ss_pred             CCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581          429 SGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       429 ~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  507 (744)
                      +.+++|++ .|.+.++|+++.   ....     ..+.+|..++.++.|+|..+.+++++.|++|+||.++++.++++|.+
T Consensus       474 ndkLiAT~SqDktaKiW~le~---~~l~-----~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  474 NDKLIATGSQDKTAKIWDLEQ---LRLL-----GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG  545 (775)
T ss_pred             CCceEEecccccceeeecccC---ceEE-----EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence            99999995 899999999973   2222     67889999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCe
Q 004581          508 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ  587 (744)
Q Consensus       508 ~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~  587 (744)
                                 |...|..+.|-.+|+.|++++.||.|++|+++++.+..++.. |...|++++-+| ...++++|+.||.
T Consensus       546 -----------H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-H~DrvWaL~~~~-~~~~~~tgg~Dg~  612 (775)
T KOG0319|consen  546 -----------HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-HNDRVWALSVSP-LLDMFVTGGGDGR  612 (775)
T ss_pred             -----------ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-ccceeEEEeecC-ccceeEecCCCeE
Confidence                       999999999999999999999999999999999999999965 778999999999 8899999999999


Q ss_pred             EEEEEcCCC
Q 004581          588 VYVFDVEAK  596 (744)
Q Consensus       588 v~vwd~~~~  596 (744)
                      |.+|.=.+.
T Consensus       613 i~~wkD~Te  621 (775)
T KOG0319|consen  613 IIFWKDVTE  621 (775)
T ss_pred             EEEeecCcH
Confidence            999965443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-46  Score=367.78  Aligned_cols=525  Identities=17%  Similarity=0.215  Sum_probs=380.9

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEee--ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQ--SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~--~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      ++.++++.-..|.+||+.+|.....+.  .-...|+|+.-+|+.                                    
T Consensus        34 Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~------------------------------------   77 (888)
T KOG0306|consen   34 GRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDI------------------------------------   77 (888)
T ss_pred             CcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCc------------------------------------
Confidence            566666667789999999995444322  234689999999988                                    


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                                    .+||+|..||.|+||+..++..+   .++.+|..+|+++.|+..|..|++|+.|+.|.+||+-...
T Consensus        78 --------------l~lAVGYaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~  140 (888)
T KOG0306|consen   78 --------------LLLAVGYADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE  140 (888)
T ss_pred             --------------ceEEEEecCceEEeeccCCCcee---eeecccccceEEEEEcccCceEeecCCCccEEEEEeccce
Confidence                          58999999999999999866555   8899999999999999999999999999999999998888


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD  242 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d  242 (744)
                      -..++.        +|...|+...|..+. .+++.+.|+.|++||+++..+..+.-.|.+.|..+++.+  +.+++++.|
T Consensus       141 Gl~rL~--------GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~d  210 (888)
T KOG0306|consen  141 GLFRLR--------GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTD  210 (888)
T ss_pred             eeEEee--------cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecC
Confidence            888888        899999999999844 899999999999999999999999999999999999987  689999999


Q ss_pred             CeEEEEEcccCcCC------------------CCC---CCCcccccceEEEEe---------------------------
Q 004581          243 GQVILYKASCESIG------------------PND---GLSSSEVIKKWIYVG---------------------------  274 (744)
Q Consensus       243 g~i~iw~~~~~~~~------------------~~~---~~~~~~~~~~~~~~~---------------------------  274 (744)
                      +.+++|++....-.                  ..+   .+.. ....++....                           
T Consensus       211 se~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~-d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~  289 (888)
T KOG0306|consen  211 SELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVT-DFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKR  289 (888)
T ss_pred             CceEEEEeecccccccccccceeeccceeeeccCCceeEEee-cCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHH
Confidence            99999999211100                  000   0000 0000000000                           


Q ss_pred             -----e-----------e---------eeccCcceeeeeeccCCCC-----CC---------CCcccccccCCCCCCccc
Q 004581          275 -----S-----------V---------RAHTHDVRALTVAVPISRE-----DP---------LPEDKVKRSRGREKPIDF  315 (744)
Q Consensus       275 -----~-----------~---------~~h~~~v~~l~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~  315 (744)
                           .           +         -.-...+.++.+.+.....     ..         .+.++..........+.+
T Consensus       290 ~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~  369 (888)
T KOG0306|consen  290 AKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI  369 (888)
T ss_pred             hhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee
Confidence                 0           0         0000111111111110000     00         000000000000000111


Q ss_pred             ccc-----ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe--CCeEEEEE
Q 004581          316 SYH-----KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILS  388 (744)
Q Consensus       316 ~~~-----~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~i~i~~  388 (744)
                      ..+     .........++..+..+.+.+|+..+.+......         ...+.+..|-|..++++.+  ++.+.+++
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---------CGYILASKFVPGDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence            000     0111122344444557899999998766443332         1356677788877777665  56899999


Q ss_pred             eeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCC----CCceEEeeeccC
Q 004581          389 VRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKV----GQGEWIINKRQL  463 (744)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~----~~~~~~~~~~~~  463 (744)
                      +....               .+.++. .|.+.|.+++.+||++.+++ +.|.+|++|++.....    ..++..+.....
T Consensus       441 laS~~---------------l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt  504 (888)
T KOG0306|consen  441 LASAS---------------LVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT  504 (888)
T ss_pred             eehhh---------------hhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence            88665               333333 78899999999999988888 5999999999874211    112222322222


Q ss_pred             CcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCc
Q 004581          464 PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD  543 (744)
Q Consensus       464 ~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~  543 (744)
                      ......+.++.+||||++||++--|.+|+||-+++.+..-++.+           |.-+|.+|..|||++.++||+.|.+
T Consensus       505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-----------HkLPV~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-----------HKLPVLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-----------cccceeEEeccCCcCeEEeccCCCc
Confidence            23334899999999999999999999999999999999999999           9999999999999999999999999


Q ss_pred             EEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEE
Q 004581          544 VYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGL  623 (744)
Q Consensus       544 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i  623 (744)
                      |+||-++=|.++..+.. |...|.++.|.| ...++++++.|+.|+-||-+.-+           +.+.+.+|...|+++
T Consensus       574 VKiWGLdFGDCHKS~fA-HdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe-----------~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  574 VKIWGLDFGDCHKSFFA-HDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFE-----------EIQKLDGHHSEVWCL  640 (888)
T ss_pred             eEEeccccchhhhhhhc-ccCceeEEEEcc-cceeEEEecCcceEEeechhhhh-----------hheeeccchheeeee
Confidence            99999999999988865 668999999999 88999999999999999987664           466799999999999


Q ss_pred             EeCCCCCCcEEEEEcCceEEEEeC
Q 004581          624 SFSPSPSSSSVIIYSARAMCVIDF  647 (744)
Q Consensus       624 ~fspdg~~~~~~~~~~~~~~~~~~  647 (744)
                      +.+|+|.   + +.+++....|++
T Consensus       641 av~~~G~---~-vvs~shD~sIRl  660 (888)
T KOG0306|consen  641 AVSPNGS---F-VVSSSHDKSIRL  660 (888)
T ss_pred             EEcCCCC---e-EEeccCCceeEe
Confidence            9999974   4 344444555665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.4e-45  Score=341.62  Aligned_cols=462  Identities=18%  Similarity=0.242  Sum_probs=362.6

Q ss_pred             CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581           14 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS   93 (744)
Q Consensus        14 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (744)
                      ...|.+-+++.+.....+..|...++-..|||.|                                              
T Consensus        38 Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG----------------------------------------------   71 (603)
T KOG0318|consen   38 GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSG----------------------------------------------   71 (603)
T ss_pred             CCEEEEEECCCccceeeeccccceeEEEEeCCCc----------------------------------------------
Confidence            3567888888888888899999999999999999                                              


Q ss_pred             cccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC----CeEEEEEccCCceEEEEE
Q 004581           94 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD----GYIRSWDAKLGYEIYRIT  169 (744)
Q Consensus        94 ~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d----g~i~vwd~~~~~~~~~~~  169 (744)
                          -++|+|...|.|||||... +...+..+++.-.++|..++|++|+++++..++.    |.+.+||  +|..+..+.
T Consensus        72 ----~yiASGD~sG~vRIWdtt~-~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~  144 (603)
T KOG0318|consen   72 ----FYIASGDVSGKVRIWDTTQ-KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEIT  144 (603)
T ss_pred             ----eEEeecCCcCcEEEEeccC-cceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceee
Confidence                5899999999999999974 3333446777788999999999999999888753    3455665  788888888


Q ss_pred             ecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEE
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL  247 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~i  247 (744)
                              +|...|.++.|-|..  ++++|+.|++|.+|+-.-.+...+++.|..-|.|+.|+|||.++++++.||++.+
T Consensus       145 --------GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i  216 (603)
T KOG0318|consen  145 --------GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI  216 (603)
T ss_pred             --------ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence                    899999999999998  8999999999999998878888889999999999999999999999999999999


Q ss_pred             EEcccCcCCCCCCCCcccccceEEEEeeee---eccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581          248 YKASCESIGPNDGLSSSEVIKKWIYVGSVR---AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG  324 (744)
Q Consensus       248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  324 (744)
                      ||-.+++.                 +..+.   +|.+.|.+++|+         ||++                      
T Consensus       217 yDGktge~-----------------vg~l~~~~aHkGsIfalsWs---------PDs~----------------------  248 (603)
T KOG0318|consen  217 YDGKTGEK-----------------VGELEDSDAHKGSIFALSWS---------PDST----------------------  248 (603)
T ss_pred             EcCCCccE-----------------EEEecCCCCccccEEEEEEC---------CCCc----------------------
Confidence            99888773                 55555   899999999998         7776                      


Q ss_pred             CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCC
Q 004581          325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH  404 (744)
Q Consensus       325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~  404 (744)
                        .+++++.|.++++||..+.........   ... ....-..+.|..+..+.++-++.+.+++.....           
T Consensus       249 --~~~T~SaDkt~KIWdVs~~slv~t~~~---~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-----------  311 (603)
T KOG0318|consen  249 --QFLTVSADKTIKIWDVSTNSLVSTWPM---GST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-----------  311 (603)
T ss_pred             --eEEEecCCceEEEEEeeccceEEEeec---CCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-----------
Confidence              999999999999999987654333221   111 112233445556666667778888888766543           


Q ss_pred             CCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCC------------------------------C
Q 004581          405 ASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVG------------------------------Q  453 (744)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~------------------------------~  453 (744)
                           +.....+|...|++++.+|++++|.++ .||.|.-|+...+...                              .
T Consensus       312 -----~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l  386 (603)
T KOG0318|consen  312 -----VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTL  386 (603)
T ss_pred             -----hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeE
Confidence                 333445677788888888888877774 7777777776542111                              0


Q ss_pred             ceEEeeec--------c---------------------------CCcc--------cccccEEEEeeCCCEEEEEeCCCc
Q 004581          454 GEWIINKR--------Q---------------------------LPRK--------LQFAHSMIFSYDSSQLIIAGHDRR  490 (744)
Q Consensus       454 ~~~~~~~~--------~---------------------------~~~~--------~~~v~~i~~spd~~~l~~~~~dg~  490 (744)
                      +..++...        +                           +..+        .-...+++++|+++.+|+|+.|+.
T Consensus       387 ~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk  466 (603)
T KOG0318|consen  387 RVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK  466 (603)
T ss_pred             EEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce
Confidence            00000000        0                           0000        004568899999999999999999


Q ss_pred             EEEEEccCCceee--eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeE
Q 004581          491 IYVVDVSSSELLH--TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA  568 (744)
Q Consensus       491 i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  568 (744)
                      |+||.+..+.+..  .+..           |.++|+.++||||+.|||+++..+.+.+||+++.+.......+|.+.|.+
T Consensus       467 vhvysl~g~~l~ee~~~~~-----------h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~  535 (603)
T KOG0318|consen  467 VHVYSLSGDELKEEAKLLE-----------HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC  535 (603)
T ss_pred             EEEEEecCCcccceeeeec-----------ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence            9999997655432  2333           89999999999999999999999999999999988866666778999999


Q ss_pred             EeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581          569 AGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       569 l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd  628 (744)
                      ++|+| +..++|+|+-|.+|.||+++.-.-          .....-.|...|..+.|-.+
T Consensus       536 ~aWsP-~n~~vATGSlDt~Viiysv~kP~~----------~i~iknAH~~gVn~v~wlde  584 (603)
T KOG0318|consen  536 VAWSP-NNKLVATGSLDTNVIIYSVKKPAK----------HIIIKNAHLGGVNSVAWLDE  584 (603)
T ss_pred             EEeCC-CceEEEeccccceEEEEEccChhh----------heEeccccccCceeEEEecC
Confidence            99999 999999999999999999986531          12223457777999999765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-44  Score=353.44  Aligned_cols=496  Identities=16%  Similarity=0.186  Sum_probs=403.7

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCC---CCCCCCcC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKS---NDSDDHET   77 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   77 (744)
                      ++|+|..|++..+.|...+-++.....++.+. ...+|.|+.|||||+.+|.+..    +...+|..-+   +...++.+
T Consensus        63 lSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g----n~lqiw~~P~~~~~~~~pFvl  137 (893)
T KOG0291|consen   63 LSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG----NLLQIWHAPGEIKNEFNPFVL  137 (893)
T ss_pred             eCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec----ceeEEEecCcchhcccCcceE
Confidence            46778888999999999999999988888877 5789999999999999987633    3344443333   34667777


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW  157 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw  157 (744)
                      ...........+......+.++|++|+.|-.++||++...+.+. ...+.+|.+.|.++-|..+...|+|.+.||.+.+|
T Consensus       138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W  216 (893)
T KOG0291|consen  138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW  216 (893)
T ss_pred             eeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence            77777788888889999999999999999999999998666643 37889999999999999999999999999999999


Q ss_pred             EccC-----------------------Cce-----EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeC
Q 004581          158 DAKL-----------------------GYE-----IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS  208 (744)
Q Consensus       158 d~~~-----------------------~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~  208 (744)
                      ....                       ++.     ......  .-........|++.+|++.- .|++|-+.|...++++
T Consensus       217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~--k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel  294 (893)
T KOG0291|consen  217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK--KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL  294 (893)
T ss_pred             EecCCCcccccccccccccccccccccchhhhcceEEEEEE--eeeecccccceeeeeccCCceEEEEEecCCeeEEEec
Confidence            8751                       111     000000  00011234789999999887 8899999999999999


Q ss_pred             CCcceEEEeeccccceeEEEEcCCCCEEEeecCC-CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee
Q 004581          209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT  287 (744)
Q Consensus       209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  287 (744)
                      ....+++.+.....+|..++|+..|.+|+.|+.. |.+.+|+.....                 ++...++|...+.+++
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----------------YVlKQQgH~~~i~~l~  357 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----------------YVLKQQGHSDRITSLA  357 (893)
T ss_pred             CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----------------eeeeccccccceeeEE
Confidence            9999999999888999999999999999998764 899999998876                 3677799999999999


Q ss_pred             eeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccc
Q 004581          288 VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHN  367 (744)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  367 (744)
                      ++         |||+                        ++++|+.||.|++||....-       |......|...++.
T Consensus       358 YS---------pDgq------------------------~iaTG~eDgKVKvWn~~Sgf-------C~vTFteHts~Vt~  397 (893)
T KOG0291|consen  358 YS---------PDGQ------------------------LIATGAEDGKVKVWNTQSGF-------CFVTFTEHTSGVTA  397 (893)
T ss_pred             EC---------CCCc------------------------EEEeccCCCcEEEEeccCce-------EEEEeccCCCceEE
Confidence            98         7776                        99999999999999997632       22334456688999


Q ss_pred             eeecCCeEEEEEe--CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEE
Q 004581          368 TIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSL  443 (744)
Q Consensus       368 ~~~s~~~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l  443 (744)
                      +.|+..+..+.+.  +++++.|++..-.               ...++..+......|++..|.|.++.+|  ..-.|.+
T Consensus       398 v~f~~~g~~llssSLDGtVRAwDlkRYr---------------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  398 VQFTARGNVLLSSSLDGTVRAWDLKRYR---------------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV  462 (893)
T ss_pred             EEEEecCCEEEEeecCCeEEeeeecccc---------------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence            9999999888765  6799999988544               5566777777788899999999999886  4457888


Q ss_pred             EEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-CCceeeeeccCcccccccCCCCCCc
Q 004581          444 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHDREIQPSEPP  522 (744)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  522 (744)
                      |++.+   +..+     ..+.+|..+|.+++|+|++..||+++.|.+|++||+- +...+.++.            +...
T Consensus       463 WS~qT---Gqll-----DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~------------i~sd  522 (893)
T KOG0291|consen  463 WSVQT---GQLL-----DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE------------IRSD  522 (893)
T ss_pred             EEeec---Ceee-----ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe------------eccc
Confidence            88876   3322     4578899999999999999999999999999999995 334556666            5788


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEec-------------------CCCCceeEEeecCCCCCeEEEEe
Q 004581          523 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR-------------------LEGASVTAAGFPPQNNNVLIITT  583 (744)
Q Consensus       523 i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~~v~~l~~sp~~~~~l~~~~  583 (744)
                      +..++|+|||+-||++..||.|.+||.+.+.....+.+                   ..+...+.+++++ ||+++++|+
T Consensus       523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG  601 (893)
T KOG0291|consen  523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGG  601 (893)
T ss_pred             eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecC
Confidence            99999999999999999999999999976554432211                   1125789999999 999999999


Q ss_pred             cCCeEEEEEcCCCc
Q 004581          584 SSNQVYVFDVEAKQ  597 (744)
Q Consensus       584 ~d~~v~vwd~~~~~  597 (744)
                      ..+.|.+|++.++-
T Consensus       602 ~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  602 ESNSICIYDVPEGV  615 (893)
T ss_pred             CcccEEEEECchhh
Confidence            99999999998764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.7e-46  Score=362.27  Aligned_cols=442  Identities=15%  Similarity=0.173  Sum_probs=364.3

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      -+||+|..||.|+||+..+.....++.+|..+|+++.|+..|                                      
T Consensus        78 l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G--------------------------------------  119 (888)
T KOG0306|consen   78 LLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIG--------------------------------------  119 (888)
T ss_pred             ceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccC--------------------------------------
Confidence            347999999999999999999999999999999999999999                                      


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                                  .+||+|+.|+.|.+||+-....+   ..+.||...|+..-|..+.++|++.|.|+.|++||+++..+.
T Consensus       120 ------------~rlaSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf  184 (888)
T KOG0306|consen  120 ------------TRLASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF  184 (888)
T ss_pred             ------------ceEeecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee
Confidence                        69999999999999999855555   789999999999999998899999999999999999999999


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC----------------cc--------eEEE-----
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH----------------GT--------LLQA-----  216 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~----------------~~--------~~~~-----  216 (744)
                      .+.-        .|.+.+|++++.+ ..+++++.|+.+++|++..                |.        .+..     
T Consensus       185 ~Thv--------d~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s  255 (888)
T KOG0306|consen  185 ETHV--------DHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS  255 (888)
T ss_pred             eEEe--------cccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence            9888        7999999999998 6889999999999999810                00        0000     


Q ss_pred             --------------------------------------------------------------------------------
Q 004581          217 --------------------------------------------------------------------------------  216 (744)
Q Consensus       217 --------------------------------------------------------------------------------  216 (744)
                                                                                                      
T Consensus       256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~  335 (888)
T KOG0306|consen  256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE  335 (888)
T ss_pred             ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence                                                                                            


Q ss_pred             ---------------------------------eeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCc
Q 004581          217 ---------------------------------HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS  263 (744)
Q Consensus       217 ---------------------------------~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  263 (744)
                                                       +.+|...|.+++++.+...+++| ..+.+++|+..+.+         
T Consensus       336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~k---------  405 (888)
T KOG0306|consen  336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLK---------  405 (888)
T ss_pred             eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcc---------
Confidence                                             34677788888888877655555 45678899888765         


Q ss_pred             ccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecC
Q 004581          264 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN  343 (744)
Q Consensus       264 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~  343 (744)
                              +++++.  ...+.+..|.         |                        +..++++|...|.+.+||+.
T Consensus       406 --------ciRTi~--~~y~l~~~Fv---------p------------------------gd~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  406 --------CIRTIT--CGYILASKFV---------P------------------------GDRYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             --------eeEEec--cccEEEEEec---------C------------------------CCceEEEeccCCceEEEEee
Confidence                    244332  2355566664         3                        34499999999999999998


Q ss_pred             ccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe--CCeEEEEEeeccCCcccCCCCCCCCC--cceEEEEEecCCC
Q 004581          344 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSGGHAS--TSLLVQVKSKASR  419 (744)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  419 (744)
                      ........       ..|...++.++.+||+..++++  +.++++|+.......+      |.++  .....+....-..
T Consensus       443 S~~l~Eti-------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~------gt~~k~lsl~~~rtLel~d  509 (888)
T KOG0306|consen  443 SASLVETI-------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP------GTQKKVLSLKHTRTLELED  509 (888)
T ss_pred             hhhhhhhh-------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC------cccceeeeeccceEEeccc
Confidence            75543322       2456889999999998866655  5699999988655321      1100  1111112233347


Q ss_pred             CeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581          420 KIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       420 ~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~  498 (744)
                      .+.|+++||||++||++ -|+++++|-+++    .+++    ..+.+|.-+|.+|.+|||++.+++|+.|.+|+||-++-
T Consensus       510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDt----lKFf----lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDT----LKFF----LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             cEEEEEEcCCCcEEEEEeccCeEEEEEecc----eeee----eeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence            89999999999999998 899999999975    2221    56788888999999999999999999999999999999


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV  578 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  578 (744)
                      |.+-+.|-+           |...|.++.|-|....+.+++.|+.|+-||-+..+.+..+.++| ..|++++.+| +|.+
T Consensus       582 GDCHKS~fA-----------HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cLav~~-~G~~  648 (888)
T KOG0306|consen  582 GDCHKSFFA-----------HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCLAVSP-NGSF  648 (888)
T ss_pred             chhhhhhhc-----------ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch-heeeeeEEcC-CCCe
Confidence            999999998           99999999999999999999999999999999999999998855 6999999999 9999


Q ss_pred             EEEEecCCeEEEEEcCCC
Q 004581          579 LIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       579 l~~~~~d~~v~vwd~~~~  596 (744)
                      +++++.|.+|++|.-...
T Consensus       649 vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  649 VVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             EEeccCCceeEeeeccCc
Confidence            999999999999986653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-42  Score=339.65  Aligned_cols=555  Identities=16%  Similarity=0.194  Sum_probs=400.6

Q ss_pred             ecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581           11 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH   90 (744)
Q Consensus        11 ~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (744)
                      ....+.|.++|+...+-...--.+...|.++++||+|                                           
T Consensus        31 SPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g-------------------------------------------   67 (893)
T KOG0291|consen   31 SPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDG-------------------------------------------   67 (893)
T ss_pred             eccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCc-------------------------------------------
Confidence            3456789999998755444333467899999999999                                           


Q ss_pred             ccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce------
Q 004581           91 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE------  164 (744)
Q Consensus        91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~------  164 (744)
                             .+|++..++|...+-++...-.+   +.+. -+.+|.|++|||||+++|.|... .+.||.......      
T Consensus        68 -------~lllavdE~g~~~lvs~~~r~Vl---h~f~-fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pF  135 (893)
T KOG0291|consen   68 -------TLLLAVDERGRALLVSLLSRSVL---HRFN-FKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPF  135 (893)
T ss_pred             -------eEEEEEcCCCcEEEEecccceee---EEEe-ecCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcc
Confidence                   57778888888888888643333   3332 35689999999999999988765 899998643211      


Q ss_pred             --EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcce--EEEeeccccceeEEEEcCCCCEEEee
Q 004581          165 --IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       165 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~~~  239 (744)
                        .+++.        +|...|.++.|+.|. .|++|+.|-.+++|+++..+-  ...+.+|...|...-|..+...+++.
T Consensus       136 vl~r~~~--------g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tv  207 (893)
T KOG0291|consen  136 VLHRTYL--------GHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTV  207 (893)
T ss_pred             eEeeeec--------CCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEE
Confidence              12222        788999999999999 889999999999999987555  57788999999999999999999999


Q ss_pred             cCCCeEEEEEcccCcCCCCC------C----CC-----cccccceEEEEee--eeeccCcceeeeeeccCCCCCCCCccc
Q 004581          240 GSDGQVILYKASCESIGPND------G----LS-----SSEVIKKWIYVGS--VRAHTHDVRALTVAVPISREDPLPEDK  302 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~~~~~------~----~~-----~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~~~~~~~  302 (744)
                      +.||.+.+|...........      +    ..     .....-.|.....  +......|++.++              
T Consensus       208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f--------------  273 (893)
T KOG0291|consen  208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF--------------  273 (893)
T ss_pred             ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec--------------
Confidence            99999999988733211000      0    00     0001113433321  1223356777777              


Q ss_pred             ccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC
Q 004581          303 VKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC  382 (744)
Q Consensus       303 ~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  382 (744)
                                         |++...|++|-..|...+|.+..+..+.....       ....|..++|+..|..++.++.
T Consensus       274 -------------------H~~t~~lvvgFssG~f~LyelP~f~lih~LSi-------s~~~I~t~~~N~tGDWiA~g~~  327 (893)
T KOG0291|consen  274 -------------------HKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI-------SDQKILTVSFNSTGDWIAFGCS  327 (893)
T ss_pred             -------------------cCCceEEEEEecCCeeEEEecCCceEEEEeec-------ccceeeEEEecccCCEEEEcCC
Confidence                               34555999999999999999988776544432       1256788999999999987754


Q ss_pred             ---eEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEe
Q 004581          383 ---RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWII  458 (744)
Q Consensus       383 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~  458 (744)
                         .+-+|++.....               +.+ ..+|...+.++++||||+++|+| .|++|++|+...   +.++   
T Consensus       328 klgQLlVweWqsEsY---------------VlK-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~---  385 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESY---------------VLK-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCF---  385 (893)
T ss_pred             ccceEEEEEeeccce---------------eee-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEE---
Confidence               899999987652               111 24577899999999999999995 999999999976   6665   


Q ss_pred             eeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581          459 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV  538 (744)
Q Consensus       459 ~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~  538 (744)
                        ..+..|...++.+.|+..|+.|++.+-||+|+.||+...+..++|..+          ......+++..|.|..+.+|
T Consensus       386 --vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P----------~p~QfscvavD~sGelV~AG  453 (893)
T KOG0291|consen  386 --VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP----------EPIQFSCVAVDPSGELVCAG  453 (893)
T ss_pred             --EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC----------CceeeeEEEEcCCCCEEEee
Confidence              677888899999999999999999999999999999999999999874          34456788888999999999


Q ss_pred             eCCC-cEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCC
Q 004581          539 NCFG-DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFP  617 (744)
Q Consensus       539 ~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~  617 (744)
                      +.|. .|.||++++|+.+-.+.+ |.++|.+++|+| ++..|++++.|.+|++||+-...-+          ..++ .+.
T Consensus       454 ~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~----------vEtl-~i~  520 (893)
T KOG0291|consen  454 AQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGT----------VETL-EIR  520 (893)
T ss_pred             ccceEEEEEEEeecCeeeehhcC-CCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCce----------eeeE-eec
Confidence            8876 699999999999888866 678999999999 9999999999999999998655211          1122 256


Q ss_pred             CceEEEEeCCCCCCcEEEEEcCceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCccccccccccccccccccccCCc
Q 004581          618 GEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRK  697 (744)
Q Consensus       618 ~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  697 (744)
                      ..+.+++|+|||+. ..+..-...+..+|......      +-+.++.      +....+ +++...   ...+.....+
T Consensus       521 sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q------~~~Idgr------kD~~~g-R~~~D~---~ta~~sa~~K  583 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQ------VGSIDGR------KDLSGG-RKETDR---ITAENSAKGK  583 (893)
T ss_pred             cceeEEEEcCCCCe-EEEEEecceEEEEEhhhcee------eccccch------hhcccc-ccccce---eehhhcccCC
Confidence            78999999999752 22333334566667533110      0000000      001111 111100   0011122334


Q ss_pred             ceEEEe--cccceEEeeecCCCeEEEEecChHHHHhcC
Q 004581          698 NFEFFA--FRDPVLFIGHLSKSSMLIIDKPWLEVVKTF  733 (744)
Q Consensus       698 ~~~~~~--~~~~~l~~~~~~~~~l~vve~p~~~~~~~l  733 (744)
                      .|.-+.  ..+.++++|-- .+.+.+..+|-..+++.|
T Consensus       584 ~Ftti~ySaDG~~IlAgG~-sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  584 TFTTICYSADGKCILAGGE-SNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             ceEEEEEcCCCCEEEecCC-cccEEEEECchhheeeeE
Confidence            564333  34777776654 566889998887777665

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-41  Score=296.20  Aligned_cols=291  Identities=19%  Similarity=0.249  Sum_probs=256.9

Q ss_pred             ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      +..++|++|.+.|.+|.|++|.                                                  ++|++++.
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Ds--------------------------------------------------r~ivSaSq   75 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDS--------------------------------------------------RRIVSASQ   75 (343)
T ss_pred             eeEEEecccccceeeeEecCCc--------------------------------------------------CeEEeecc
Confidence            3457899999999999999999                                                  69999999


Q ss_pred             CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC--c----eEEEEEecCCCCCCCC
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--Y----EIYRITVGLGGLGSGP  179 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~--~----~~~~~~~~~~~~~~~~  179 (744)
                      ||.+.|||.-+..+.   +.+.-....|..++|+|.|+++|+|+-|+...||++.+.  +    ..+.+.        +|
T Consensus        76 DGklIvWDs~TtnK~---haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~--------gH  144 (343)
T KOG0286|consen   76 DGKLIVWDSFTTNKV---HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA--------GH  144 (343)
T ss_pred             CCeEEEEEcccccce---eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec--------Cc
Confidence            999999999876665   666777889999999999999999999999999999854  2    223343        79


Q ss_pred             ceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEEEEEcccCcCCCC
Q 004581          180 ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPN  258 (744)
Q Consensus       180 ~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~  258 (744)
                      ...+.++.|.+|++|++++.|.+..+||+++|+.+..+.+|.++|.+|.++| +++.+++|+.|+..++||++.+.    
T Consensus       145 tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~----  220 (343)
T KOG0286|consen  145 TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ----  220 (343)
T ss_pred             cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc----
Confidence            9999999999999999999999999999999999999999999999999999 99999999999999999999987    


Q ss_pred             CCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEE
Q 004581          259 DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLF  338 (744)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~  338 (744)
                                   +.+.+.+|..+|.++.|.         |+|                        .-+++|+.|++.+
T Consensus       221 -------------c~qtF~ghesDINsv~ff---------P~G------------------------~afatGSDD~tcR  254 (343)
T KOG0286|consen  221 -------------CVQTFEGHESDINSVRFF---------PSG------------------------DAFATGSDDATCR  254 (343)
T ss_pred             -------------eeEeecccccccceEEEc---------cCC------------------------CeeeecCCCceeE
Confidence                         588999999999999995         444                        4999999999999


Q ss_pred             EEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCC
Q 004581          339 AYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS  418 (744)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (744)
                      +||++....+                                                                      
T Consensus       255 lyDlRaD~~~----------------------------------------------------------------------  264 (343)
T KOG0286|consen  255 LYDLRADQEL----------------------------------------------------------------------  264 (343)
T ss_pred             EEeecCCcEE----------------------------------------------------------------------
Confidence            9999752210                                                                      


Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581          419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~  498 (744)
                                             .+|.-                 .....+|++++||..|++|++|..|.++.+||.-.
T Consensus       265 -----------------------a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk  304 (343)
T KOG0286|consen  265 -----------------------AVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK  304 (343)
T ss_pred             -----------------------eeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence                                   00000                 00112799999999999999999999999999989


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      ++.+..+.+           |...|+++..+|||.-+++|+.|..++||.
T Consensus       305 ~e~vg~L~G-----------HeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  305 GERVGVLAG-----------HENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cceEEEeec-----------cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999           999999999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-43  Score=322.44  Aligned_cols=274  Identities=19%  Similarity=0.261  Sum_probs=246.1

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      ++..+..|+||+-+|.+.+|+..++..+++|.+|...|.++.|+|....                               
T Consensus       183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-------------------------------  231 (459)
T KOG0272|consen  183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-------------------------------  231 (459)
T ss_pred             eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-------------------------------
Confidence            3567888999999999999999999999999999999999999998411                               


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~  160 (744)
                                       ..||+|+.||++++|++.+...+   ..|.+|..+|..++|+|+|++|+|+|.|.+-++||++
T Consensus       232 -----------------~~lat~s~Dgtvklw~~~~e~~l---~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~  291 (459)
T KOG0272|consen  232 -----------------LNLATASADGTVKLWKLSQETPL---QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE  291 (459)
T ss_pred             -----------------cceeeeccCCceeeeccCCCcch---hhhhcchhhheeeeecCCCceeeecccccchhhcccc
Confidence                             48999999999999999866666   8999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEee
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~  239 (744)
                      ++..+....        +|...|.+++|.+|| .+++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+|..|+||
T Consensus       292 tk~ElL~QE--------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg  363 (459)
T KOG0272|consen  292 TKSELLLQE--------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG  363 (459)
T ss_pred             cchhhHhhc--------ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence            998887776        899999999999999 88999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581          240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK  319 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (744)
                      +.|+++++||++....                 +..+.+|++-|..+.++         |.                   
T Consensus       364 s~Dnt~kVWDLR~r~~-----------------ly~ipAH~nlVS~Vk~~---------p~-------------------  398 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSE-----------------LYTIPAHSNLVSQVKYS---------PQ-------------------  398 (459)
T ss_pred             CCCCcEEEeeeccccc-----------------ceecccccchhhheEec---------cc-------------------
Confidence            9999999999998763                 77889999999999997         31                   


Q ss_pred             cccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCC
Q 004581          320 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS  399 (744)
Q Consensus       320 w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~  399 (744)
                          .+.+|++++.|+++++|...+.....                                                  
T Consensus       399 ----~g~fL~TasyD~t~kiWs~~~~~~~k--------------------------------------------------  424 (459)
T KOG0272|consen  399 ----EGYFLVTASYDNTVKIWSTRTWSPLK--------------------------------------------------  424 (459)
T ss_pred             ----CCeEEEEcccCcceeeecCCCcccch--------------------------------------------------
Confidence                23499999999999999887644221                                                  


Q ss_pred             CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEE
Q 004581          400 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFE  445 (744)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~  445 (744)
                                   .-.+|...|.++.+++|++++++ +.|.++++|.
T Consensus       425 -------------sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  425 -------------SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             -------------hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence                         11356788999999999999998 5888998885

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-42  Score=318.26  Aligned_cols=267  Identities=15%  Similarity=0.205  Sum_probs=244.6

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC--CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d--g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (744)
                      ..||+|+.+|.+++|+..+...+   .+|.+|...|.++.|+|.  +..||||+.||++++|++.+...+..+.      
T Consensus       188 ~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~------  258 (459)
T KOG0272|consen  188 KHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE------  258 (459)
T ss_pred             CeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh------
Confidence            69999999999999999866544   899999999999999997  5689999999999999999889999988      


Q ss_pred             CCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          176 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                        +|...|..++|+|+| +|++++.|.+-++||+++++.+....+|...|.+++|.+||..+++||.|..-++||++++.
T Consensus       259 --gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr  336 (459)
T KOG0272|consen  259 --GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR  336 (459)
T ss_pred             --cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence              799999999999999 89999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581          255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD  334 (744)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d  334 (744)
                                       ++..+.+|...|.+++|+         |+|.                        .|++|+.|
T Consensus       337 -----------------~im~L~gH~k~I~~V~fs---------PNGy------------------------~lATgs~D  366 (459)
T KOG0272|consen  337 -----------------CIMFLAGHIKEILSVAFS---------PNGY------------------------HLATGSSD  366 (459)
T ss_pred             -----------------EEEEecccccceeeEeEC---------CCce------------------------EEeecCCC
Confidence                             478889999999999997         6665                        89999999


Q ss_pred             CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581          335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK  414 (744)
Q Consensus       335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (744)
                      +++++||++....                                                                   
T Consensus       367 nt~kVWDLR~r~~-------------------------------------------------------------------  379 (459)
T KOG0272|consen  367 NTCKVWDLRMRSE-------------------------------------------------------------------  379 (459)
T ss_pred             CcEEEeeeccccc-------------------------------------------------------------------
Confidence            9999999874110                                                                   


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee-CCCEEEEEeCCCcEEE
Q 004581          415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYV  493 (744)
Q Consensus       415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v  493 (744)
                                                              +     ..++.|..-|+.+.|+| .|.+|++++.|++++|
T Consensus       380 ----------------------------------------l-----y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki  414 (459)
T KOG0272|consen  380 ----------------------------------------L-----YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI  414 (459)
T ss_pred             ----------------------------------------c-----eecccccchhhheEecccCCeEEEEcccCcceee
Confidence                                                    1     33556666888999998 7899999999999999


Q ss_pred             EEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      |...++++++++.+           |.+.|.++.+++|++++++++.|.++++|.
T Consensus       415 Ws~~~~~~~ksLaG-----------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  415 WSTRTWSPLKSLAG-----------HEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ecCCCcccchhhcC-----------CccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999           999999999999999999999999999995

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=4.3e-38  Score=312.70  Aligned_cols=492  Identities=14%  Similarity=0.180  Sum_probs=378.2

Q ss_pred             CCeeEEecCCCeEEEEEccCC-ce----eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581            5 GGRLFSSSIDGSVSEWDLYDL-KQ----KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE   79 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~-~~----~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (744)
                      |..|+++..++.+.+|+..++ ..    ...++.....|+++ ++|+ +|+                             
T Consensus       124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~-TYL-----------------------------  172 (910)
T KOG1539|consen  124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPS-TYL-----------------------------  172 (910)
T ss_pred             cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecch-hhe-----------------------------
Confidence            677888899999999998874 11    11223223336665 5665 466                             


Q ss_pred             CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581           80 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA  159 (744)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~  159 (744)
                                        +.++.|+.+|.+.||++.+++.+   .+++++...|+++.=+|-=+.+|.|..+|+|.++++
T Consensus       173 ------------------NKIvvGs~~G~lql~Nvrt~K~v---~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl  231 (910)
T KOG1539|consen  173 ------------------NKIVVGSSQGRLQLWNVRTGKVV---YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL  231 (910)
T ss_pred             ------------------eeEEEeecCCcEEEEEeccCcEE---EEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence                              68999999999999999988888   899999999999999999999999999999999999


Q ss_pred             cCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEee-ccccceeEEEEcCCCCEE
Q 004581          160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRV  236 (744)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l  236 (744)
                      +.++.+..++        ...+.|++++|..||  .+++|+..|.+-+||++..+.+..+. .|.+.|..+.|.|....+
T Consensus       232 K~dkil~sFk--------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl  303 (910)
T KOG1539|consen  232 KFDKILMSFK--------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVL  303 (910)
T ss_pred             ccCcEEEEEE--------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceE
Confidence            9999999998        235999999999999  78999999999999999877776655 898999999999999999


Q ss_pred             EeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc
Q 004581          237 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS  316 (744)
Q Consensus       237 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (744)
                      ++++.|+.+++|-.+++...             -+.++...+|+.+-.++.|.                           
T Consensus       304 ~ta~~DnSlk~~vfD~~dg~-------------pR~LR~R~GHs~Pp~~irfy---------------------------  343 (910)
T KOG1539|consen  304 VTAGADNSLKVWVFDSGDGV-------------PRLLRSRGGHSAPPSCIRFY---------------------------  343 (910)
T ss_pred             eeccCCCceeEEEeeCCCCc-------------chheeeccCCCCCchheeee---------------------------
Confidence            99999999999987765421             23477888999999999985                           


Q ss_pred             ccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc----------CC-CCCCCccccccceeecCCe-----EEEEEe
Q 004581          317 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI----------CP-APQRVPIHLVHNTIFSHTS-----LLLVQY  380 (744)
Q Consensus       317 ~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~v~~~~~s~~~-----~~l~~~  380 (744)
                           ...+..+.+++.|++++.+++.....-+....          .. .........+..+++....     ..++..
T Consensus       344 -----~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h  418 (910)
T KOG1539|consen  344 -----GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH  418 (910)
T ss_pred             -----ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence                 22344899999999999998754221111100          00 0111122344444444322     233443


Q ss_pred             CC--eEEEEEeeccCCcccCCCCCCCCCcceEEEEE--ecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCce
Q 004581          381 SC--RLDILSVRLENNVESRSSSGGHASTSLLVQVK--SKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGE  455 (744)
Q Consensus       381 ~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~  455 (744)
                      -+  ....|++.......            ....-.  .+....++++++++.|++...| +.|.|-+|++..   ++..
T Consensus       419 ~~~~~~~tW~~~n~~~G~------------~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS---Gi~r  483 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGR------------HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS---GIHR  483 (910)
T ss_pred             cCcceEEEEeccCccccc------------EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc---Ceee
Confidence            33  67777776544210            110000  1134778999999999999886 889999999986   3321


Q ss_pred             EEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEE
Q 004581          456 WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL  535 (744)
Q Consensus       456 ~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l  535 (744)
                        -.-..-+.|..+|+.++...-++.+++++.+|.+.+||.....++..+.-            ...++.+..+.....+
T Consensus       484 --~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l------------~~~~~~iv~hr~s~l~  549 (910)
T KOG1539|consen  484 --KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL------------GSSITGIVYHRVSDLL  549 (910)
T ss_pred             --cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc------------CCCcceeeeeehhhhh
Confidence              00022357778999999988899999999999999999998888888874            7788999999999999


Q ss_pred             EEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581          536 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE  615 (744)
Q Consensus       536 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~  615 (744)
                      |.+..|=.|+++|..+.+....+.+ |+..|++++||| ||++|++++.|++|++||+.++.+.+            ...
T Consensus       550 a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID------------~~~  615 (910)
T KOG1539|consen  550 AIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLID------------GLL  615 (910)
T ss_pred             hhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceee------------eEe
Confidence            9999999999999999888777765 778999999999 99999999999999999999998644            223


Q ss_pred             CCCceEEEEeCCCCC--------CcEEEEEcCceEEE
Q 004581          616 FPGEVIGLSFSPSPS--------SSSVIIYSARAMCV  644 (744)
Q Consensus       616 ~~~~v~~i~fspdg~--------~~~~~~~~~~~~~~  644 (744)
                      .+.++..+.|||.|.        .+-+++|....++.
T Consensus       616 vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~  652 (910)
T KOG1539|consen  616 VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFK  652 (910)
T ss_pred             cCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhe
Confidence            568999999999875        23455555555443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-39  Score=278.08  Aligned_cols=298  Identities=20%  Similarity=0.213  Sum_probs=247.8

Q ss_pred             CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581           25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        25 ~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      .....++++|.+.|..++..+.+.                                                 +.+.+++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~-------------------------------------------------~~l~sas   35 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNS-------------------------------------------------DILVSAS   35 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCC-------------------------------------------------ceEEEcc
Confidence            345568999999999999999863                                                 5899999


Q ss_pred             cCCeEEEEEecCCCce--eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581          105 DDGCVRIYRITDSDEL--IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC  182 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (744)
                      .|..+.+|++......  ...+.+.||...|..++.++||++.++++.|+++++||+.+|+..++|.        +|...
T Consensus        36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~--------GH~~d  107 (315)
T KOG0279|consen   36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV--------GHTKD  107 (315)
T ss_pred             cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE--------ecCCc
Confidence            9999999999743211  1248899999999999999999999999999999999999999999998        79999


Q ss_pred             EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeecc--ccceeEEEEcCC--CCEEEeecCCCeEEEEEcccCcCCC
Q 004581          183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH--KGDVNALAAAPS--HNRVFSTGSDGQVILYKASCESIGP  257 (744)
Q Consensus       183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~  257 (744)
                      |.+++|++|+ ++++|+.|.+|++||.. |.+..++..+  ...|.|++|+|+  ..+|++++.|++|++||+++.+.  
T Consensus       108 Vlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--  184 (315)
T KOG0279|consen  108 VLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--  184 (315)
T ss_pred             eEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--
Confidence            9999999999 99999999999999998 6666666554  688999999998  68999999999999999998763  


Q ss_pred             CCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeE
Q 004581          258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL  337 (744)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i  337 (744)
                                     ...+.+|++.++.++++         |||.                        +.++|+.||.+
T Consensus       185 ---------------~~~~~gh~~~v~t~~vS---------pDGs------------------------lcasGgkdg~~  216 (315)
T KOG0279|consen  185 ---------------RTTFIGHSGYVNTVTVS---------PDGS------------------------LCASGGKDGEA  216 (315)
T ss_pred             ---------------hhccccccccEEEEEEC---------CCCC------------------------EEecCCCCceE
Confidence                           56778999999999998         7776                        99999999999


Q ss_pred             EEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC
Q 004581          338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA  417 (744)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (744)
                      .+||++..+.                                                              ++.  ..+
T Consensus       217 ~LwdL~~~k~--------------------------------------------------------------lys--l~a  232 (315)
T KOG0279|consen  217 MLWDLNEGKN--------------------------------------------------------------LYS--LEA  232 (315)
T ss_pred             EEEEccCCce--------------------------------------------------------------eEe--ccC
Confidence            9999986442                                                              111  234


Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeee----ccCCcccccccEEEEeeCCCEEEEEeCCCcEEE
Q 004581          418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINK----RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV  493 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v  493 (744)
                      ...|.+++|+|+.-+|+.+.+..|+||++..   ...+.+++-    ...........+++||+||..|++|..|+.|++
T Consensus       233 ~~~v~sl~fspnrywL~~at~~sIkIwdl~~---~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv  309 (315)
T KOG0279|consen  233 FDIVNSLCFSPNRYWLCAATATSIKIWDLES---KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV  309 (315)
T ss_pred             CCeEeeEEecCCceeEeeccCCceEEEeccc---hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence            4778999999999999998888899999976   222211111    111111235667899999999999999999999


Q ss_pred             EEcc
Q 004581          494 VDVS  497 (744)
Q Consensus       494 ~d~~  497 (744)
                      |.+.
T Consensus       310 ~qv~  313 (315)
T KOG0279|consen  310 WQVA  313 (315)
T ss_pred             EEee
Confidence            9874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.8e-39  Score=272.48  Aligned_cols=295  Identities=15%  Similarity=0.147  Sum_probs=247.0

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcc--eEEEeecc
Q 004581          143 NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT--LLQAHSFH  220 (744)
Q Consensus       143 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~h  220 (744)
                      -+|++++.|.+||+|...+|.+.+++.        ..+..|..+...|++..+++.....|++||++++.  ++.++.+|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiq--------h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQ--------HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEe--------cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc
Confidence            479999999999999999999999998        57789999999999955555557789999999864  58999999


Q ss_pred             ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCc
Q 004581          221 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE  300 (744)
Q Consensus       221 ~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~  300 (744)
                      ...|+++.|..+|+.+++|+.||+++|||++...                  ......|..+|.++.+.           
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~------------------~qR~~~~~spVn~vvlh-----------  133 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS------------------CQRNYQHNSPVNTVVLH-----------  133 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcc------------------cchhccCCCCcceEEec-----------
Confidence            9999999999999999999999999999999855                  34456677999999985           


Q ss_pred             ccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe
Q 004581          301 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY  380 (744)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  380 (744)
                                            |+...|++|..+|.|++||+.+..-                                 
T Consensus       134 ----------------------pnQteLis~dqsg~irvWDl~~~~c---------------------------------  158 (311)
T KOG0315|consen  134 ----------------------PNQTELISGDQSGNIRVWDLGENSC---------------------------------  158 (311)
T ss_pred             ----------------------CCcceEEeecCCCcEEEEEccCCcc---------------------------------
Confidence                                  3444899999999999999976321                                 


Q ss_pred             CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEee
Q 004581          381 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIIN  459 (744)
Q Consensus       381 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~  459 (744)
                                                   ..++.......+.++++.|||++++.+ ..|..++|++-.......+  ..
T Consensus       159 -----------------------------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l--~P  207 (311)
T KOG0315|consen  159 -----------------------------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL--EP  207 (311)
T ss_pred             -----------------------------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc--eE
Confidence                                         111111223668899999999998885 8899999999873333333  33


Q ss_pred             eccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581          460 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV  538 (744)
Q Consensus       460 ~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~  538 (744)
                      ..+++.|...+..+.+|||+++||+++.|.+++||+.++. +...++++           |...+...+||.||+||++|
T Consensus       208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g-----------h~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG-----------HQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec-----------CCceEEeeeeccCccEEEec
Confidence            3567788889999999999999999999999999999887 67777888           89999999999999999999


Q ss_pred             eCCCcEEEEECCCcceEEEEecCCCCceeEEeec
Q 004581          539 NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFP  572 (744)
Q Consensus       539 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s  572 (744)
                      +.|+.+++|++..++......++|. ...+++..
T Consensus       277 ssd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln  309 (311)
T KOG0315|consen  277 SSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN  309 (311)
T ss_pred             CCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence            9999999999999998888877664 55566553

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-38  Score=275.31  Aligned_cols=293  Identities=18%  Similarity=0.257  Sum_probs=246.4

Q ss_pred             ceeEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccC-----CceEEEEEecCCCCCCCCceeEEEEEEecCC
Q 004581          119 ELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKL-----GYEIYRITVGLGGLGSGPELCIWSLLSLRCG  192 (744)
Q Consensus       119 ~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  192 (744)
                      .+....++++|.+.|+.++..+. .+.|++++.|.++.+|++..     |..+++++        +|...|..+..++||
T Consensus         4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--------GHsH~v~dv~~s~dg   75 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--------GHSHFVSDVVLSSDG   75 (315)
T ss_pred             hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee--------ccceEecceEEccCC
Confidence            34455789999999999999987 56888999999999998754     67778887        899999999999999


Q ss_pred             -eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEE
Q 004581          193 -TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWI  271 (744)
Q Consensus       193 -~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  271 (744)
                       +.++++.|+++++||+.+|+..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+.....                 
T Consensus        76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-----------------  138 (315)
T KOG0279|consen   76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-----------------  138 (315)
T ss_pred             ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-----------------
Confidence             89999999999999999999999999999999999999999999999999999999998764                 


Q ss_pred             EEeeeee--ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCC
Q 004581          272 YVGSVRA--HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS  349 (744)
Q Consensus       272 ~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~  349 (744)
                       ..++..  +..-|.++.|+         |+.                      ..++|++++.|+++++||+++.+.. 
T Consensus       139 -k~t~~~~~~~~WVscvrfs---------P~~----------------------~~p~Ivs~s~DktvKvWnl~~~~l~-  185 (315)
T KOG0279|consen  139 -KYTIHEDSHREWVSCVRFS---------PNE----------------------SNPIIVSASWDKTVKVWNLRNCQLR-  185 (315)
T ss_pred             -EEEEecCCCcCcEEEEEEc---------CCC----------------------CCcEEEEccCCceEEEEccCCcchh-
Confidence             233332  36778999997         332                      1348999999999999988753210 


Q ss_pred             CcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC
Q 004581          350 PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS  429 (744)
Q Consensus       350 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  429 (744)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (315)
T KOG0279|consen  186 --------------------------------------------------------------------------------  185 (315)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCc
Q 004581          430 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR  509 (744)
Q Consensus       430 g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  509 (744)
                                                     ..+.+|...++.+++||||..+++|+.||.+.+||+..++.++++.   
T Consensus       186 -------------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---  231 (315)
T KOG0279|consen  186 -------------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---  231 (315)
T ss_pred             -------------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---
Confidence                                           3344566688999999999999999999999999999999999998   


Q ss_pred             ccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCC--------CCceeEEeecCCCCCeEEE
Q 004581          510 EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--------GASVTAAGFPPQNNNVLII  581 (744)
Q Consensus       510 ~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~v~~l~~sp~~~~~l~~  581 (744)
                               |...|.+++|+|+.-+|+.+... .|+|||+++...+..+....        ...-.+++|++ ||..|+.
T Consensus       232 ---------a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~  300 (315)
T KOG0279|consen  232 ---------AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFA  300 (315)
T ss_pred             ---------CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEe
Confidence                     58999999999998888777544 49999999887765543211        12346789999 9999999


Q ss_pred             EecCCeEEEEEcC
Q 004581          582 TTSSNQVYVFDVE  594 (744)
Q Consensus       582 ~~~d~~v~vwd~~  594 (744)
                      +..|+.|++|.+.
T Consensus       301 g~td~~irv~qv~  313 (315)
T KOG0279|consen  301 GYTDNVIRVWQVA  313 (315)
T ss_pred             eecCCcEEEEEee
Confidence            9999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.6e-38  Score=273.69  Aligned_cols=290  Identities=14%  Similarity=0.167  Sum_probs=256.1

Q ss_pred             EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC
Q 004581          122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST  200 (744)
Q Consensus       122 ~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d  200 (744)
                      ..++|++|.+.|.++.|++|+++|++++.||.+.|||.-+....+.++        -....|..++|+|.| .+++|+-|
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--------l~s~WVMtCA~sPSg~~VAcGGLd  118 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--------LPSSWVMTCAYSPSGNFVACGGLD  118 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--------cCceeEEEEEECCCCCeEEecCcC
Confidence            338899999999999999999999999999999999999998888888        367899999999999 88999999


Q ss_pred             CCEEEEeCCCc------ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEe
Q 004581          201 GSVQFWDSRHG------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG  274 (744)
Q Consensus       201 g~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (744)
                      +...||++.+.      ...+.+.+|++-+.|+.|.+|+ .|++++.|.+..+||+++++                 .+.
T Consensus       119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~-----------------~~~  180 (343)
T KOG0286|consen  119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQ-----------------QTQ  180 (343)
T ss_pred             ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccce-----------------EEE
Confidence            99999999854      3456789999999999999865 69999999999999999988                 478


Q ss_pred             eeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccC
Q 004581          275 SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEIC  354 (744)
Q Consensus       275 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~  354 (744)
                      .+.+|+.+|.++.++         |.                       +.+.+++|+-|+..++||++...        
T Consensus       181 ~f~GH~gDV~slsl~---------p~-----------------------~~ntFvSg~cD~~aklWD~R~~~--------  220 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLS---------PS-----------------------DGNTFVSGGCDKSAKLWDVRSGQ--------  220 (343)
T ss_pred             EecCCcccEEEEecC---------CC-----------------------CCCeEEecccccceeeeeccCcc--------
Confidence            899999999999996         31                       22489999999999999987411        


Q ss_pred             CCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 004581          355 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA  434 (744)
Q Consensus       355 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la  434 (744)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (343)
T KOG0286|consen  221 --------------------------------------------------------------------------------  220 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccc
Q 004581          435 YSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR  514 (744)
Q Consensus       435 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~  514 (744)
                                         .     .+.+++|...|+++.|.|+|.-+++|+.|+++++||+...+.+..+....     
T Consensus       221 -------------------c-----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-----  271 (343)
T KOG0286|consen  221 -------------------C-----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS-----  271 (343)
T ss_pred             -------------------e-----eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-----
Confidence                               1     14456677789999999999999999999999999999888888887522     


Q ss_pred             cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581          515 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       515 ~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                          ...+|++++||..|++|.+|..|.++.+||.-.++....+.+ |...|.++..+| ||.-|++++.|.+++||.
T Consensus       272 ----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-HeNRvScl~~s~-DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  272 ----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-HENRVSCLGVSP-DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ----ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-cCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence                367899999999999999999999999999998888877865 778999999999 999999999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-37  Score=297.31  Aligned_cols=436  Identities=11%  Similarity=0.151  Sum_probs=325.8

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      |+|-..+++++=.+|.|.|||.+|...++.+.-...+|.+..|-+..                                 
T Consensus        21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk---------------------------------   67 (794)
T KOG0276|consen   21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK---------------------------------   67 (794)
T ss_pred             cCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc---------------------------------
Confidence            56777888899999999999999999999999999999999998877                                 


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~  160 (744)
                                       +++++|++|..|+||+..+.+.+   +.|.+|..-|.|++.+|...+++|++.|-+|++||.+
T Consensus        68 -----------------nWiv~GsDD~~IrVfnynt~ekV---~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we  127 (794)
T KOG0276|consen   68 -----------------NWIVTGSDDMQIRVFNYNTGEKV---KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE  127 (794)
T ss_pred             -----------------ceEEEecCCceEEEEecccceee---EEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence                             69999999999999999988888   8999999999999999999999999999999999997


Q ss_pred             CC-ceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC--CE
Q 004581          161 LG-YEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH--NR  235 (744)
Q Consensus       161 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~  235 (744)
                      .+ .+.+.+.        +|...|.+++|.|..  ++++++-|++|+||.+.+..+..++++|...|+|+.|-+-|  .+
T Consensus       128 ~~wa~~qtfe--------GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpy  199 (794)
T KOG0276|consen  128 NEWACEQTFE--------GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPY  199 (794)
T ss_pred             CceeeeeEEc--------CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcce
Confidence            65 5566666        899999999999976  89999999999999999999999999999999999998754  79


Q ss_pred             EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccc
Q 004581          236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF  315 (744)
Q Consensus       236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (744)
                      |++|+.|.++++||..+..                 |++++.+|++.|..+.|.                          
T Consensus       200 lIsgaDD~tiKvWDyQtk~-----------------CV~TLeGHt~Nvs~v~fh--------------------------  236 (794)
T KOG0276|consen  200 LISGADDLTIKVWDYQTKS-----------------CVQTLEGHTNNVSFVFFH--------------------------  236 (794)
T ss_pred             EEecCCCceEEEeecchHH-----------------HHHHhhcccccceEEEec--------------------------
Confidence            9999999999999999987                 488999999999999994                          


Q ss_pred             cccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC-----------------------
Q 004581          316 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH-----------------------  372 (744)
Q Consensus       316 ~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----------------------  372 (744)
                             |..+.+++|+.||++++|+..+.+.......       -...+++++..+                       
T Consensus       237 -------p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP  302 (794)
T KOG0276|consen  237 -------PELPIIISGSEDGTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEP  302 (794)
T ss_pred             -------CCCcEEEEecCCccEEEecCcceehhhhhhc-------CCceEEEEeecCCCCeEEEeccCCcEEEEccCCCC
Confidence                   4455999999999999999987654432221       113444444433                       


Q ss_pred             ------CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEe
Q 004581          373 ------TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFEL  446 (744)
Q Consensus       373 ------~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~  446 (744)
                            .|+++.+..+.+.--++.+-....  ....|..-+-.+..+- .-.-....++.||+|++++++.||.-.||..
T Consensus       303 ~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~--ev~DgErL~LsvKeLg-s~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa  379 (794)
T KOG0276|consen  303 AVSMDSNGKIIWAVHSEIQAVNLKSVGAQK--EVTDGERLPLSVKELG-SVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA  379 (794)
T ss_pred             ceeecCCccEEEEcCceeeeeeceeccCcc--cccCCccccchhhhcc-ccccchHHhccCCCCcEEEEecCccEEEEEe
Confidence                  333333322222111111111000  0000110000000000 0012234678899999999999999999874


Q ss_pred             ecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEE
Q 004581          447 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM  526 (744)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  526 (744)
                      -.       |  . .   ...+......|++|.+..++-..++.|.++  ++++..+.+..            ....-.+
T Consensus       380 la-------~--R-n---K~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~------------~~~~e~i  432 (794)
T KOG0276|consen  380 LA-------L--R-N---KAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRP------------DMSAEGI  432 (794)
T ss_pred             ee-------h--h-h---cccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccc------------ccceeee
Confidence            32       1  1 1   123356678899998888888888999999  67777777664            1111111


Q ss_pred             EECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581          527 FTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       527 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~  594 (744)
                         -.|.+|... .++.+++||.+++..+..+..    .+..+.|+. +|.+++.++.|. .+++.++
T Consensus       433 ---~gg~Llg~~-ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d-~g~lVai~~d~S-fyil~~n  490 (794)
T KOG0276|consen  433 ---FGGPLLGVR-SSDFLCFYDWESGELVRRIEV----TSKHVYWSD-NGELVAIAGDDS-FYILKFN  490 (794)
T ss_pred             ---cCCceEEEE-eCCeEEEEEcccceEEEEEee----ccceeEEec-CCCEEEEEecCc-eeEEEec
Confidence               134455555 456699999999998877753    456789998 888877777654 5555543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2e-38  Score=270.27  Aligned_cols=295  Identities=17%  Similarity=0.277  Sum_probs=238.2

Q ss_pred             eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581            7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS   86 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (744)
                      .|+++|.|.+|++|...+|++.++++-....|..+.+.||+                                       
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk---------------------------------------   52 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK---------------------------------------   52 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc---------------------------------------
Confidence            59999999999999999999999999878999999999999                                       


Q ss_pred             ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEE
Q 004581           87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY  166 (744)
Q Consensus        87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~  166 (744)
                                 +.||+++. ..||+||+.++... ...++.+|...|+++.|..||++++||++||+++|||++...+.+
T Consensus        53 -----------~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR  119 (311)
T KOG0315|consen   53 -----------KDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR  119 (311)
T ss_pred             -----------chhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence                       46666665 68999999866553 348999999999999999999999999999999999999977766


Q ss_pred             EEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEee-ccccceeEEEEcCCCCEEEeecCCCe
Q 004581          167 RITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQ  244 (744)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~~~~~dg~  244 (744)
                      .+.         +..+|.++..+|+. .|++|+.+|.|++||+.+..+...+- .....|.++...|||.+++.+...|+
T Consensus       120 ~~~---------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  120 NYQ---------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             hcc---------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence            664         77999999999988 89999999999999999876665543 33467999999999999999999999


Q ss_pred             EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581          245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG  324 (744)
Q Consensus       245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  324 (744)
                      .++|++-....           ....+++..++.|+..+....++         ||++                      
T Consensus       191 cyvW~l~~~~~-----------~s~l~P~~k~~ah~~~il~C~lS---------Pd~k----------------------  228 (311)
T KOG0315|consen  191 CYVWRLLNHQT-----------ASELEPVHKFQAHNGHILRCLLS---------PDVK----------------------  228 (311)
T ss_pred             EEEEEccCCCc-----------cccceEhhheecccceEEEEEEC---------CCCc----------------------
Confidence            99999987542           12233445555666555555554         4444                      


Q ss_pred             CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCC
Q 004581          325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH  404 (744)
Q Consensus       325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~  404 (744)
                        +|++++.|.++++|+.+++                                                           
T Consensus       229 --~lat~ssdktv~iwn~~~~-----------------------------------------------------------  247 (311)
T KOG0315|consen  229 --YLATCSSDKTVKIWNTDDF-----------------------------------------------------------  247 (311)
T ss_pred             --EEEeecCCceEEEEecCCc-----------------------------------------------------------
Confidence              5666666666655555431                                                           


Q ss_pred             CCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEE
Q 004581          405 ASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII  484 (744)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~  484 (744)
                                                                      .+   + ...+.+|...+...+||.||.||++
T Consensus       248 ------------------------------------------------~k---l-e~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  248 ------------------------------------------------FK---L-ELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             ------------------------------------------------ee---e-EEEeecCCceEEeeeeccCccEEEe
Confidence                                                            11   1 1334455568889999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE
Q 004581          485 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT  528 (744)
Q Consensus       485 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  528 (744)
                      |+.|+.+++|++..++.++.+.+           |.....+++.
T Consensus       276 assd~~~rlW~~~~~k~v~qy~g-----------h~K~~vc~~l  308 (311)
T KOG0315|consen  276 ASSDHTARLWDLSAGKEVRQYQG-----------HHKAAVCVAL  308 (311)
T ss_pred             cCCCCceeecccccCceeeecCC-----------cccccEEEEe
Confidence            99999999999999999999999           6666666654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.5e-38  Score=294.20  Aligned_cols=323  Identities=19%  Similarity=0.265  Sum_probs=271.5

Q ss_pred             CCCCCC-eeEEecCCCeEEEEEccC----CceeEEee------c----cCcceeEEeeccCCCccccccccccccCCccc
Q 004581            1 MGLPGG-RLFSSSIDGSVSEWDLYD----LKQKIVLQ------S----IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL   65 (744)
Q Consensus         1 ~~~~~~-~l~~~~~d~~i~iwd~~~----~~~~~~~~------~----h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~   65 (744)
                      |.|... .|++++.|-+.++|++..    +.....|+      +    ....|++++|+.+|                  
T Consensus       186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G------------------  247 (524)
T KOG0273|consen  186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG------------------  247 (524)
T ss_pred             cCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC------------------
Confidence            444444 799999999999999974    11111111      1    23679999999999                  


Q ss_pred             cCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEE
Q 004581           66 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNML  145 (744)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l  145 (744)
                                                      ..||+|+.||.++||+.. +..+   .+|..|+++|.++.|+.+|++|
T Consensus       248 --------------------------------~~LatG~~~G~~riw~~~-G~l~---~tl~~HkgPI~slKWnk~G~yi  291 (524)
T KOG0273|consen  248 --------------------------------TLLATGSEDGEARIWNKD-GNLI---STLGQHKGPIFSLKWNKKGTYI  291 (524)
T ss_pred             --------------------------------CeEEEeecCcEEEEEecC-chhh---hhhhccCCceEEEEEcCCCCEE
Confidence                                            699999999999999996 5555   8899999999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeecccccee
Q 004581          146 YSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVN  225 (744)
Q Consensus       146 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  225 (744)
                      ++++.|+++.+||..+|.....+.        -|..+-..+.|..+..+++++.|+.|+|+.+...+++.++.+|.++|.
T Consensus       292 lS~~vD~ttilwd~~~g~~~q~f~--------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~  363 (524)
T KOG0273|consen  292 LSGGVDGTTILWDAHTGTVKQQFE--------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN  363 (524)
T ss_pred             EeccCCccEEEEeccCceEEEeee--------eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence            999999999999999999999888        377776788999888999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccc
Q 004581          226 ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR  305 (744)
Q Consensus       226 ~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~  305 (744)
                      +|.|+|.|.+|++++.|+++++|+.....                 ....+..|+..|..+.++         |++..  
T Consensus       364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----------------~~~~l~~Hskei~t~~ws---------p~g~v--  415 (524)
T KOG0273|consen  364 ALKWNPTGSLLASCSDDGTLKIWSMGQSN-----------------SVHDLQAHSKEIYTIKWS---------PTGPV--  415 (524)
T ss_pred             EEEECCCCceEEEecCCCeeEeeecCCCc-----------------chhhhhhhccceeeEeec---------CCCCc--
Confidence            99999999999999999999999987765                 266789999999999998         55541  


Q ss_pred             cCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEE
Q 004581          306 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD  385 (744)
Q Consensus       306 ~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~  385 (744)
                                   .|....+..+++++.|++|++||+..                                         
T Consensus       416 -------------~~n~~~~~~l~sas~dstV~lwdv~~-----------------------------------------  441 (524)
T KOG0273|consen  416 -------------TSNPNMNLMLASASFDSTVKLWDVES-----------------------------------------  441 (524)
T ss_pred             -------------cCCCcCCceEEEeecCCeEEEEEccC-----------------------------------------
Confidence                         12233344677777777777776653                                         


Q ss_pred             EEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCc
Q 004581          386 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR  465 (744)
Q Consensus       386 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~  465 (744)
                                                                                        +..+     ..+..
T Consensus       442 ------------------------------------------------------------------gv~i-----~~f~k  450 (524)
T KOG0273|consen  442 ------------------------------------------------------------------GVPI-----HTLMK  450 (524)
T ss_pred             ------------------------------------------------------------------Ccee-----Eeecc
Confidence                                                                              2222     23455


Q ss_pred             ccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEE
Q 004581          466 KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY  545 (744)
Q Consensus       466 ~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~  545 (744)
                      |..+|.+++|||+|+|+|+|+.||.|.+|+.+++++.+.+.+            .+.|..++|+.+|.+|..+-.|+.++
T Consensus       451 H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~------------~~~Ifel~Wn~~G~kl~~~~sd~~vc  518 (524)
T KOG0273|consen  451 HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG------------TGGIFELCWNAAGDKLGACASDGSVC  518 (524)
T ss_pred             CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC------------CCeEEEEEEcCCCCEEEEEecCCCce
Confidence            666999999999999999999999999999999999999996            77799999999999999999999999


Q ss_pred             EEECC
Q 004581          546 IFNLE  550 (744)
Q Consensus       546 iwd~~  550 (744)
                      +.|+.
T Consensus       519 vldlr  523 (524)
T KOG0273|consen  519 VLDLR  523 (524)
T ss_pred             EEEec
Confidence            98864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.9e-38  Score=292.27  Aligned_cols=331  Identities=19%  Similarity=0.231  Sum_probs=275.0

Q ss_pred             cCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccC--Cc--eEEEEEec--CCCCCCCCceeEEEEEEecCC-eEEEEc
Q 004581          127 PRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKL--GY--EIYRITVG--LGGLGSGPELCIWSLLSLRCG-TLVSAD  198 (744)
Q Consensus       127 ~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~--~~--~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~s~~  198 (744)
                      ..|+.+|.+++|+|-.. .|++++.|...++|++..  ..  ....++..  ...........|++++|+.+| .|++|+
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~  254 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS  254 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence            34999999999999877 899999999999999864  11  11111110  111122345789999999999 899999


Q ss_pred             CCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581          199 STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA  278 (744)
Q Consensus       199 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (744)
                      .||.+++|+.. |.++.++..|.++|.++.|+.+|++|++++.|+++.+||..++..                 ...+..
T Consensus       255 ~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-----------------~q~f~~  316 (524)
T KOG0273|consen  255 EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-----------------KQQFEF  316 (524)
T ss_pred             cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-----------------EEeeee
Confidence            99999999987 889999999999999999999999999999999999999988762                 456677


Q ss_pred             ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581          279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ  358 (744)
Q Consensus       279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~  358 (744)
                      |+.+-..+.|-                                  +...+++++.|+.|+++.+....            
T Consensus       317 ~s~~~lDVdW~----------------------------------~~~~F~ts~td~~i~V~kv~~~~------------  350 (524)
T KOG0273|consen  317 HSAPALDVDWQ----------------------------------SNDEFATSSTDGCIHVCKVGEDR------------  350 (524)
T ss_pred             ccCCccceEEe----------------------------------cCceEeecCCCceEEEEEecCCC------------
Confidence            77765566663                                  22379999999999999876422            


Q ss_pred             CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-Ec
Q 004581          359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SD  437 (744)
Q Consensus       359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~  437 (744)
                                                                        ++.++. +|...|.++.|.|.|.+|++ ++
T Consensus       351 --------------------------------------------------P~~t~~-GH~g~V~alk~n~tg~LLaS~Sd  379 (524)
T KOG0273|consen  351 --------------------------------------------------PVKTFI-GHHGEVNALKWNPTGSLLASCSD  379 (524)
T ss_pred             --------------------------------------------------cceeee-cccCceEEEEECCCCceEEEecC
Confidence                                                              122233 37799999999999999999 58


Q ss_pred             CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCC---------EEEEEeCCCcEEEEEccCCceeeeeccC
Q 004581          438 HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS---------QLIIAGHDRRIYVVDVSSSELLHTFTPC  508 (744)
Q Consensus       438 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~---------~l~~~~~dg~i~v~d~~~~~~~~~~~~~  508 (744)
                      |++++||++..   ....     ..+..|...|..+.|+|+|.         .+++++.|++|++||+..+.++++|.. 
T Consensus       380 D~TlkiWs~~~---~~~~-----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-  450 (524)
T KOG0273|consen  380 DGTLKIWSMGQ---SNSV-----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-  450 (524)
T ss_pred             CCeeEeeecCC---Ccch-----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-
Confidence            99999999865   2232     56778888999999999754         789999999999999999999999987 


Q ss_pred             cccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeE
Q 004581          509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV  588 (744)
Q Consensus       509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v  588 (744)
                                |..+|.+++|||+|+|||+|+.||.|+||+.++++.......  ++.|..++|+. +|++|..+-.|+.+
T Consensus       451 ----------H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~-~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  451 ----------HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNA-AGDKLGACASDGSV  517 (524)
T ss_pred             ----------CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcC-CCCEEEEEecCCCc
Confidence                      999999999999999999999999999999999998877754  35799999999 99999999999999


Q ss_pred             EEEEcC
Q 004581          589 YVFDVE  594 (744)
Q Consensus       589 ~vwd~~  594 (744)
                      .+-|+.
T Consensus       518 cvldlr  523 (524)
T KOG0273|consen  518 CVLDLR  523 (524)
T ss_pred             eEEEec
Confidence            998874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.2e-37  Score=276.48  Aligned_cols=341  Identities=16%  Similarity=0.195  Sum_probs=272.9

Q ss_pred             eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecC
Q 004581           27 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD  106 (744)
Q Consensus        27 ~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d  106 (744)
                      .+.+|..|...|.+++.+|+.                                                  +++|+|+.|
T Consensus        56 S~~tF~~H~~svFavsl~P~~--------------------------------------------------~l~aTGGgD   85 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNN--------------------------------------------------NLVATGGGD   85 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCC--------------------------------------------------ceEEecCCC
Confidence            456899999999999999976                                                  699999999


Q ss_pred             CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEE
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL  186 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (744)
                      ..-.||++.+++.+   ..+.+|+..|+++.||.||.+||||+-+|.|+||+..+|.....+.        .....+.-+
T Consensus        86 D~AflW~~~~ge~~---~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--------~e~~dieWl  154 (399)
T KOG0296|consen   86 DLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--------QEVEDIEWL  154 (399)
T ss_pred             ceEEEEEccCCcce---eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee--------cccCceEEE
Confidence            99999999988855   8899999999999999999999999999999999999999998886        355677889


Q ss_pred             EEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581          187 LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE  265 (744)
Q Consensus       187 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  265 (744)
                      .|+|.+ .|++|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|++++++..||+|++|+..+++.          
T Consensus       155 ~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p----------  224 (399)
T KOG0296|consen  155 KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP----------  224 (399)
T ss_pred             EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce----------
Confidence            999988 899999999999999999888999999999999999999999999999999999999998762          


Q ss_pred             ccceEEEEeeeee-ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          266 VIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       266 ~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                             +..+.+ ......++.++         .+                        +..++.|..++.+++-+..+
T Consensus       225 -------~~~~~~~e~~~~~~~~~~---------~~------------------------~~~~~~g~~e~~~~~~~~~s  264 (399)
T KOG0296|consen  225 -------LHKITQAEGLELPCISLN---------LA------------------------GSTLTKGNSEGVACGVNNGS  264 (399)
T ss_pred             -------eEEecccccCcCCccccc---------cc------------------------cceeEeccCCccEEEEcccc
Confidence                   222221 12223344432         11                        22677777777666644332


Q ss_pred             cCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEE
Q 004581          345 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS  424 (744)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  424 (744)
                      .+                             ++.+..+                                          
T Consensus       265 gK-----------------------------Vv~~~n~------------------------------------------  273 (399)
T KOG0296|consen  265 GK-----------------------------VVNCNNG------------------------------------------  273 (399)
T ss_pred             ce-----------------------------EEEecCC------------------------------------------
Confidence            11                             1111000                                          


Q ss_pred             EEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeee
Q 004581          425 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT  504 (744)
Q Consensus       425 ~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~  504 (744)
                          .                      ...+    +.........+-.+.++..=.+.|+|+-||+|.|||+...++.+.
T Consensus       274 ----~----------------------~~~l----~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~  323 (399)
T KOG0296|consen  274 ----T----------------------VPEL----KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI  323 (399)
T ss_pred             ----C----------------------Cccc----cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence                0                      0000    000111111344455566667889999999999999998877777


Q ss_pred             eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec
Q 004581          505 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS  584 (744)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~  584 (744)
                      +.            |...|+.+.|-+ ..+|++++.+|.|+.||..++++...+.+ |...|.+++.+| +.+++++++.
T Consensus       324 c~------------he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~-~~~~vvT~s~  388 (399)
T KOG0296|consen  324 CE------------HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG-HQMGILDFALSP-QKRLVVTVSD  388 (399)
T ss_pred             cc------------CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec-CchheeEEEEcC-CCcEEEEecC
Confidence            66            789999999998 78999999999999999999999888865 778999999999 9999999999


Q ss_pred             CCeEEEEEcC
Q 004581          585 SNQVYVFDVE  594 (744)
Q Consensus       585 d~~v~vwd~~  594 (744)
                      |++.+||++.
T Consensus       389 D~~a~VF~v~  398 (399)
T KOG0296|consen  389 DNTALVFEVP  398 (399)
T ss_pred             CCeEEEEecC
Confidence            9999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-37  Score=304.65  Aligned_cols=462  Identities=18%  Similarity=0.213  Sum_probs=351.9

Q ss_pred             eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581            7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS   86 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (744)
                      .++.|+.+|.+.+||+.+++.+++++++...|+++.=+|--                                       
T Consensus       174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---------------------------------------  214 (910)
T KOG1539|consen  174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---------------------------------------  214 (910)
T ss_pred             eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------------------------
Confidence            47899999999999999999999999999999999999976                                       


Q ss_pred             ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceE
Q 004581           87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus        87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                                 +.+|+|..+|+|.|+++..++.+   .+|+.-.++|++++|..||. .||+|+..|.+.+||++..+.+
T Consensus       215 -----------DVVaiG~~~G~ViifNlK~dkil---~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  215 -----------DVVAIGLENGTVIIFNLKFDKIL---MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI  280 (910)
T ss_pred             -----------eEEEEeccCceEEEEEcccCcEE---EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence                       69999999999999999988877   67764469999999999998 5677777899999999988888


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC--c--ceEEEeeccccceeEEEEc-CCCCEEEee
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--G--TLLQAHSFHKGDVNALAAA-PSHNRVFST  239 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~--~--~~~~~~~~h~~~v~~l~~~-~~~~~l~~~  239 (744)
                      ..+..       .|.+.|....|.|.. .+++++.|+.+++|=.++  |  +.++.-.+|..+..|+.|. .+|..+.++
T Consensus       281 ~v~~n-------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa  353 (910)
T KOG1539|consen  281 NVTRN-------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA  353 (910)
T ss_pred             eeeec-------cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence            77774       688889999999888 899999999999885554  3  5667778999999999998 678999999


Q ss_pred             cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEe-eeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581          240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH  318 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (744)
                      +.|++++.+++....+....+........+-.... .....-.+|..+++.          ..+              -.
T Consensus       354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~----------~~R--------------E~  409 (910)
T KOG1539|consen  354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE----------NAR--------------EK  409 (910)
T ss_pred             ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc----------cch--------------hh
Confidence            99999999988765532211110000000000000 001112234444432          110              00


Q ss_pred             ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE--eCCeEEEEEeeccCCcc
Q 004581          319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ--YSCRLDILSVRLENNVE  396 (744)
Q Consensus       319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~i~i~~~~~~~~~~  396 (744)
                      .|    .+.++..-.+..++.|+..+... ..+...+.+.......+.+++.++.|.+.+.  ..+.|.++++..+-...
T Consensus       410 ~W----~Nv~~~h~~~~~~~tW~~~n~~~-G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~  484 (910)
T KOG1539|consen  410 EW----DNVITAHKGKRSAYTWNFRNKTS-GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK  484 (910)
T ss_pred             hh----cceeEEecCcceEEEEeccCccc-ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec
Confidence            12    12555556677999999987543 1222223333334567888999998886665  46799999998764221


Q ss_pred             cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEE
Q 004581          397 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIF  475 (744)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  475 (744)
                                   -+.-...|...|+.++...-++.+++ +.+|.++.|++..   ...   +....+   ...+.++..
T Consensus       485 -------------sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~---k~l---~~~l~l---~~~~~~iv~  542 (910)
T KOG1539|consen  485 -------------SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK---KVL---KKSLRL---GSSITGIVY  542 (910)
T ss_pred             -------------ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC---cce---eeeecc---CCCcceeee
Confidence                         01112467789999999988887776 6999999999975   211   111222   126788888


Q ss_pred             eeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE
Q 004581          476 SYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH  555 (744)
Q Consensus       476 spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~  555 (744)
                      +.....+|++..|-.|+++|..+.+.++.|.+           |...|++++|||||+||++++.|++|++||+.++.++
T Consensus       543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-----------h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-----------HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             eehhhhhhhhcCceeEEEEEchhhhhhHHhhc-----------cccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence            88999999999999999999999999999999           9999999999999999999999999999999999987


Q ss_pred             EEEecCCCCceeEEeecCCCCCeEEEEecC-CeEEEEEc
Q 004581          556 WFISRLEGASVTAAGFPPQNNNVLIITTSS-NQVYVFDV  593 (744)
Q Consensus       556 ~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d-~~v~vwd~  593 (744)
                      -.+..  ..+.+++.|+| +|++||++..| .-|++|.=
T Consensus       612 D~~~v--d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  612 DGLLV--DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eeEec--CCcceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence            77654  35899999999 99999999998 58999963

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5.1e-37  Score=299.07  Aligned_cols=460  Identities=18%  Similarity=0.243  Sum_probs=332.5

Q ss_pred             CCCCCeeEEe--cCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccC------------------
Q 004581            2 GLPGGRLFSS--SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIG------------------   61 (744)
Q Consensus         2 ~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~------------------   61 (744)
                      ++.|.++|+|  |....+++|++.+-.++..|..|...|+|++|+|.++|+++.+..++.+.                  
T Consensus        87 S~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss  166 (1080)
T KOG1408|consen   87 SQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISS  166 (1080)
T ss_pred             cCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccce
Confidence            5567778887  47789999999999999999999999999999999999997766544322                  


Q ss_pred             ---------------------CccccCCCCCC--CC-------CcCccCCCCCC----------ccccccccc-------
Q 004581           62 ---------------------NGYLNDKSNDS--DD-------HETSESENDSD----------SDELHEQSV-------   94 (744)
Q Consensus        62 ---------------------~~~~~~~~~~~--~~-------~~~~~~~~~~~----------~~~~~~~~~-------   94 (744)
                                           +.+|+.....+  .+       ..+..+.+...          ....++...       
T Consensus       167 ~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF  246 (1080)
T KOG1408|consen  167 VVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF  246 (1080)
T ss_pred             eEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence                                 33333322110  00       00011111110          011111111       


Q ss_pred             ---------------------ccCCeEEEEecCCeEEEEEecCCCceeEeeccc--------------------Ccc---
Q 004581           95 ---------------------VEDRRVALACDDGCVRIYRITDSDELIYHRSLP--------------------RVS---  130 (744)
Q Consensus        95 ---------------------~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~h~---  130 (744)
                                           ...+++++||.+|.|+||+.++-.   +..++.                    +..   
T Consensus       247 SsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~---y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~  323 (1080)
T KOG1408|consen  247 SSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLD---YAGTLPRSHALGSDTANLSQPEPKNSESSPAI  323 (1080)
T ss_pred             chhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhh---hccccccccccccchhhcccccccccccCccc
Confidence                                 145799999999999999875322   111111                    000   


Q ss_pred             -CcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc----eEEEEEecCCCCCCCCceeEEEEEEec------------CCe
Q 004581          131 -GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLR------------CGT  193 (744)
Q Consensus       131 -~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~  193 (744)
                       --..++.|++....|...-.|..+.|||++.-.    +...+         -|...||.+.-.|            .+-
T Consensus       324 fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l---------yHS~ciW~Ve~~p~nv~~~~~aclp~~c  394 (1080)
T KOG1408|consen  324 FPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML---------YHSACIWDVENLPCNVHSPTAACLPRGC  394 (1080)
T ss_pred             CCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeee---------eccceeeeeccccccccCcccccCCccc
Confidence             113578899999999999999999999997743    33333         4899999987654            346


Q ss_pred             EEEEcCCCCEEEEeCCCcceEEEe-------------------------------------eccccceeEEEEcCCCCEE
Q 004581          194 LVSADSTGSVQFWDSRHGTLLQAH-------------------------------------SFHKGDVNALAAAPSHNRV  236 (744)
Q Consensus       194 l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------------~~h~~~v~~l~~~~~~~~l  236 (744)
                      ++++++|++|++||+..+..-..+                                     -.....+.+++++|+|++|
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL  474 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL  474 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence            899999999999999853211110                                     0112468999999999999


Q ss_pred             EeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc
Q 004581          237 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS  316 (744)
Q Consensus       237 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (744)
                      ++|..-|++++|++..-.                 ....+..|...|.|+.++.|.-                       
T Consensus       475 AsGDr~GnlrVy~Lq~l~-----------------~~~~~eAHesEilcLeyS~p~~-----------------------  514 (1080)
T KOG1408|consen  475 ASGDRGGNLRVYDLQELE-----------------YTCFMEAHESEILCLEYSFPVL-----------------------  514 (1080)
T ss_pred             cccCccCceEEEEehhhh-----------------hhhheecccceeEEEeecCchh-----------------------
Confidence            999999999999998765                 2567789999999999973211                       


Q ss_pred             ccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcc
Q 004581          317 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE  396 (744)
Q Consensus       317 ~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~  396 (744)
                             ...+|++++.|..|.+||......                                                 
T Consensus       515 -------~~kLLASasrdRlIHV~Dv~rny~-------------------------------------------------  538 (1080)
T KOG1408|consen  515 -------TNKLLASASRDRLIHVYDVKRNYD-------------------------------------------------  538 (1080)
T ss_pred             -------hhHhhhhccCCceEEEEecccccc-------------------------------------------------
Confidence                   224899999999999999864221                                                 


Q ss_pred             cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC---CEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEE
Q 004581          397 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSG---MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSM  473 (744)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  473 (744)
                                   +.+....|...|+++.|.-+|   ++|.+|.|.. ..|+.....+...++.-.+..+.  ...+..|
T Consensus       539 -------------l~qtld~HSssITsvKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~--ktTlYDm  602 (1080)
T KOG1408|consen  539 -------------LVQTLDGHSSSITSVKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLS--KTTLYDM  602 (1080)
T ss_pred             -------------hhhhhcccccceeEEEEeecCCceEEEeccCchh-hheehhccccCceeccccccccc--cceEEEe
Confidence                         111123456788888888777   3444455544 44554432222232211111111  2268899


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581          474 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR  553 (744)
Q Consensus       474 ~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~  553 (744)
                      +..|..+++++++.|..|+|||+++|+..+.|++.+.        |.+..-.+...|.|.|||+...|.++.+||.-+++
T Consensus       603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~--------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD--------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE  674 (1080)
T ss_pred             eeCCCcceEEEEecccceEEEeccccceeeeeccccc--------CCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence            9999999999999999999999999999999998655        88889999999999999999999999999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCC
Q 004581          554 QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA  595 (744)
Q Consensus       554 ~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~  595 (744)
                      +...+.+ |+..|+.+.|.+ |-+.|++++.||.|+||.+..
T Consensus       675 cvA~m~G-HsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  675 CVAQMTG-HSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhhhhcC-cchheeeeeecc-cchhheeecCCceEEEEECch
Confidence            9888865 778999999999 999999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-37  Score=278.73  Aligned_cols=305  Identities=17%  Similarity=0.216  Sum_probs=256.9

Q ss_pred             ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      ...+.+.+|..+|+.+-|+|+-                                                  ..++++++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~--------------------------------------------------~~v~~as~  128 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSE--------------------------------------------------ALVVSASE  128 (406)
T ss_pred             CchhhhhccccceeeeeeccCc--------------------------------------------------eEEEEecC
Confidence            3445677788888888898887                                                  58889999


Q ss_pred             CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEE
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIW  184 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~  184 (744)
                      |++|++||..+++..   +.++||...|..++|+..|++||+++.|-.+++||.++ .+++..+.        +|+..|.
T Consensus       129 d~tikv~D~~tg~~e---~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~--------gh~h~vS  197 (406)
T KOG0295|consen  129 DATIKVFDTETGELE---RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI--------GHEHGVS  197 (406)
T ss_pred             CceEEEEEccchhhh---hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc--------Cccccee
Confidence            999999999988775   99999999999999999999999999998899999977 55666665        7999999


Q ss_pred             EEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCc
Q 004581          185 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS  263 (744)
Q Consensus       185 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  263 (744)
                      +++|.|.| ++++++.|.+|+.|+..+|-++.++.+|...|..++.+.||..+++++.|.++++|-+.+++         
T Consensus       198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---------  268 (406)
T KOG0295|consen  198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---------  268 (406)
T ss_pred             eEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------
Confidence            99999999 99999999999999999999999999999999999999999999999999999999999876         


Q ss_pred             ccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecC
Q 004581          264 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN  343 (744)
Q Consensus       264 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~  343 (744)
                              +...++.|.++|.+++|.+..........                  .-+..+++++.+++.|++|++||+.
T Consensus       269 --------~k~~lR~hEh~vEci~wap~~~~~~i~~a------------------t~~~~~~~~l~s~SrDktIk~wdv~  322 (406)
T KOG0295|consen  269 --------CKAELREHEHPVECIAWAPESSYPSISEA------------------TGSTNGGQVLGSGSRDKTIKIWDVS  322 (406)
T ss_pred             --------hhhhhhccccceEEEEecccccCcchhhc------------------cCCCCCccEEEeecccceEEEEecc
Confidence                    35678999999999999743221100000                  0001133466666666666666665


Q ss_pred             ccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 004581          344 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC  423 (744)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (744)
                      +                                                                               
T Consensus       323 t-------------------------------------------------------------------------------  323 (406)
T KOG0295|consen  323 T-------------------------------------------------------------------------------  323 (406)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            3                                                                               


Q ss_pred             EEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceee
Q 004581          424 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH  503 (744)
Q Consensus       424 ~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~  503 (744)
                                                  +.++     .++.+|...|+.++|+|.|+||+++.+|+++++||++++++++
T Consensus       324 ----------------------------g~cL-----~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  324 ----------------------------GMCL-----FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK  370 (406)
T ss_pred             ----------------------------CeEE-----EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence                                        1222     3345666799999999999999999999999999999999999


Q ss_pred             eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581          504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~  549 (744)
                      ++..           |..-++++.|..+..|+++|+-|..+++|.-
T Consensus       371 ~~~a-----------h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  371 TLEA-----------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ccCC-----------CcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9998           8999999999999999999999999999963

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=282.91  Aligned_cols=506  Identities=12%  Similarity=0.095  Sum_probs=344.0

Q ss_pred             CCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccc
Q 004581           13 IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQ   92 (744)
Q Consensus        13 ~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (744)
                      ....|.++|+...++-+.+..|..+++|+|||++|                                             
T Consensus        56 AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~G---------------------------------------------   90 (1080)
T KOG1408|consen   56 AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNG---------------------------------------------   90 (1080)
T ss_pred             cCcEEEEEcccccchhheecccCcceeEEEEcCCC---------------------------------------------
Confidence            45689999999988888899999999999999999                                             


Q ss_pred             ccccCCeEEEEe--cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceEEEE
Q 004581           93 SVVEDRRVALAC--DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRI  168 (744)
Q Consensus        93 ~~~~~~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~--dg~i~vwd~~~~~~~~~~  168 (744)
                           +++|+|-  ....+++|++.....+   ..|..|+-.|+|++|+|.++++++.+.  |-.|.+||++.......-
T Consensus        91 -----ryvatGEcG~~pa~kVw~la~h~vV---AEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn  162 (1080)
T KOG1408|consen   91 -----RYVATGECGRTPASKVWSLAFHGVV---AEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN  162 (1080)
T ss_pred             -----cEEEecccCCCccceeeeeccccch---hhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence                 4666664  6678999999977766   889999999999999999999998776  556888887654333222


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEE-------------E------------------
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ-------------A------------------  216 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-------------~------------------  216 (744)
                               .....|..++|+.|| ++++.+ ..+|++|.++.++...             .                  
T Consensus       163 ---------kiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAe  232 (1080)
T KOG1408|consen  163 ---------KISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAE  232 (1080)
T ss_pred             ---------ccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCccccc
Confidence                     355677888888888 555544 5678888776433100             0                  


Q ss_pred             ----e--ecc-----------------ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC------------------
Q 004581          217 ----H--SFH-----------------KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI------------------  255 (744)
Q Consensus       217 ----~--~~h-----------------~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------  255 (744)
                          +  ++|                 +....|++.+  .++|++|+.+|.|++|+..+-..                  
T Consensus       233 stfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~  310 (1080)
T KOG1408|consen  233 STFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLS  310 (1080)
T ss_pred             ceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcc
Confidence                0  000                 1112334443  45667777777777776544221                  


Q ss_pred             -------CCCCCC----Cc--ccccceEE---------------------EEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581          256 -------GPNDGL----SS--SEVIKKWI---------------------YVGSVRAHTHDVRALTVAVPISREDPLPED  301 (744)
Q Consensus       256 -------~~~~~~----~~--~~~~~~~~---------------------~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  301 (744)
                             ......    ++  ......|.                     ....+..|+..|..+...+         -.
T Consensus       311 q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p---------~n  381 (1080)
T KOG1408|consen  311 QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP---------CN  381 (1080)
T ss_pred             cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc---------cc
Confidence                   000000    00  00011111                     1223344555555554321         00


Q ss_pred             cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCc------------------------------
Q 004581          302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH------------------------------  351 (744)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~------------------------------  351 (744)
                      -   ...          .-+.-....+++++.|++|++|++.....-...                              
T Consensus       382 v---~~~----------~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~f  448 (1080)
T KOG1408|consen  382 V---HSP----------TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIF  448 (1080)
T ss_pred             c---cCc----------ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcc
Confidence            0   000          000111236999999999999999752110000                              


Q ss_pred             ccCCCCCCCccccccceeecCCeEEEEEeCC--eEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCC
Q 004581          352 EICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS  429 (744)
Q Consensus       352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  429 (744)
                      .......-.....+++++.+|+++.|++++.  .+++|++....                .......|...|.|+.+|..
T Consensus       449 dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----------------~~~~~eAHesEilcLeyS~p  512 (1080)
T KOG1408|consen  449 DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----------------YTCFMEAHESEILCLEYSFP  512 (1080)
T ss_pred             cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh----------------hhhheecccceeEEEeecCc
Confidence            0000011122357889999999999999875  89999887544                12233567889999999864


Q ss_pred             ---CCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC--CEEEEEeCCCcEEEEEccCCceee
Q 004581          430 ---GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS--SQLIIAGHDRRIYVVDVSSSELLH  503 (744)
Q Consensus       430 ---g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~--~~l~~~~~dg~i~v~d~~~~~~~~  503 (744)
                         .++||. +.|.-|.+||...   ...   + .+.+.+|...|+++.|-..|  ..+++++.|..|.+--.+...-..
T Consensus       513 ~~~~kLLASasrdRlIHV~Dv~r---ny~---l-~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~  585 (1080)
T KOG1408|consen  513 VLTNKLLASASRDRLIHVYDVKR---NYD---L-VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR  585 (1080)
T ss_pred             hhhhHhhhhccCCceEEEEeccc---ccc---h-hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence               377888 5888999999865   111   1 16788899999999998877  678888888866543322111111


Q ss_pred             eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC--CceeEEeecCCCCCeEEE
Q 004581          504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG--ASVTAAGFPPQNNNVLII  581 (744)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~l~~  581 (744)
                      .|..+..      ......+..|+..|..+++++++.|.+|+||++++++....+++.+.  +....+...| .|.|||+
T Consensus       586 ~f~r~t~------t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~at  658 (1080)
T KOG1408|consen  586 LFPRHTQ------TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLAT  658 (1080)
T ss_pred             ecccccc------ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEE
Confidence            1221000      00246688999999999999999999999999999999999987654  5678889999 9999999


Q ss_pred             EecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeC
Q 004581          582 TTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF  647 (744)
Q Consensus       582 ~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~  647 (744)
                      .+.|.++.+||.-+|++           ..+..+|...|+++.|.+| ....+-+.+...||+..+
T Consensus       659 Scsdktl~~~Df~sgEc-----------vA~m~GHsE~VTG~kF~nD-CkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  659 SCSDKTLCFVDFVSGEC-----------VAQMTGHSEAVTGVKFLND-CKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             eecCCceEEEEeccchh-----------hhhhcCcchheeeeeeccc-chhheeecCCceEEEEEC
Confidence            99999999999999974           6678899999999999999 666677778888887665

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=7.1e-35  Score=284.00  Aligned_cols=498  Identities=13%  Similarity=0.120  Sum_probs=346.7

Q ss_pred             eEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcc
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD   87 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (744)
                      +++-|....|.+||..+.....++.+|..+|+|+.+-|+.+..                                     
T Consensus        27 ~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~-------------------------------------   69 (764)
T KOG1063|consen   27 LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIV-------------------------------------   69 (764)
T ss_pred             eEEecCCceEEEeCcccceeEEeccCCccceEEEEEccccccc-------------------------------------
Confidence            3444556899999999877788899999999999999998632                                     


Q ss_pred             cccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eE
Q 004581           88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EI  165 (744)
Q Consensus        88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~  165 (744)
                                .++++|+.|+.|++|.++ .+.+.....+.+|...+.|+  +.........+.|+.+.+||.+..+  +.
T Consensus        70 ----------a~~vsG~sD~~v~lW~l~-~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~  136 (764)
T KOG1063|consen   70 ----------AEMVSGDSDGRVILWKLR-DEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLL  136 (764)
T ss_pred             ----------ceEEEccCCCcEEEEEEe-ehheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeee
Confidence                      389999999999999998 56666668888876655554  4322233333689999999985444  22


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecC-C--eEEEEcCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCC---EEE
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRC-G--TLVSADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHN---RVF  237 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~---~l~  237 (744)
                      ..+...      .....-.|+++.++ +  .++.|+.+..|.++.-..  .+.+..+.+|...|.+++|...+.   +|+
T Consensus       137 ~~~rf~------~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la  210 (764)
T KOG1063|consen  137 AVLRFE------IKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA  210 (764)
T ss_pred             hheehh------hhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE
Confidence            223211      11223345566663 3  577788888888887654  356788999999999999987554   788


Q ss_pred             eecCCCeEEEEEcccCcCCC----CCCCCcccccceEEEE----------eeeeeccCcceeeeeeccCCCCCCCCcccc
Q 004581          238 STGSDGQVILYKASCESIGP----NDGLSSSEVIKKWIYV----------GSVRAHTHDVRALTVAVPISREDPLPEDKV  303 (744)
Q Consensus       238 ~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~  303 (744)
                      +++.|..|++|.+.-.....    ............+...          ..+.+|.+.|.++.|.         |++. 
T Consensus       211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~---------p~~~-  280 (764)
T KOG1063|consen  211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH---------PEGL-  280 (764)
T ss_pred             ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc---------cchh-
Confidence            99999999999987654211    1111111112222222          2234899999999996         4443 


Q ss_pred             cccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC--
Q 004581          304 KRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--  381 (744)
Q Consensus       304 ~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  381 (744)
                                             .|++++.|.++.+|...+..-+..................+..|+|++..+++.+  
T Consensus       281 -----------------------~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~  337 (764)
T KOG1063|consen  281 -----------------------DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT  337 (764)
T ss_pred             -----------------------hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence                                   7999999999999998765333222211111222334567888999997777654  


Q ss_pred             CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCC----------
Q 004581          382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGK----------  450 (744)
Q Consensus       382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~----------  450 (744)
                      +...+|.-.....-             .......+|-..+..++|+|.|++|.+ +.|.+.|+|..-...          
T Consensus       338 Gg~hlWkt~d~~~w-------------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ  404 (764)
T KOG1063|consen  338 GGFHLWKTKDKTFW-------------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ  404 (764)
T ss_pred             CcEEEEeccCccce-------------eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence            58888882211100             122234677788999999999998776 788888877543000          


Q ss_pred             ---------------------CCCc---eEEe------------------------------------------------
Q 004581          451 ---------------------VGQG---EWII------------------------------------------------  458 (744)
Q Consensus       451 ---------------------~~~~---~~~~------------------------------------------------  458 (744)
                                           ...+   .++.                                                
T Consensus       405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~  484 (764)
T KOG1063|consen  405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE  484 (764)
T ss_pred             cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence                                 0000   0000                                                


Q ss_pred             --------------------------------eeccCCcccccccEEEEeeCCCEEEEEeCCC-----cEEEEEccCCce
Q 004581          459 --------------------------------NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-----RIYVVDVSSSEL  501 (744)
Q Consensus       459 --------------------------------~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg-----~i~v~d~~~~~~  501 (744)
                                                      +..++.+|.-.|.+++.+|+++++|+++...     .|++|+..+...
T Consensus       485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~  564 (764)
T KOG1063|consen  485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ  564 (764)
T ss_pred             cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence                                            0001234444789999999999999997643     699999998888


Q ss_pred             eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE---EEEecCCCCceeEEeecCCCCCe
Q 004581          502 LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH---WFISRLEGASVTAAGFPPQNNNV  578 (744)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~l~~sp~~~~~  578 (744)
                      ++.+.+           |.-.|+.|+|||||+||++++.|.++.+|........   ......|..-|.++.|+| ++.+
T Consensus       565 ~~~L~~-----------HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~  632 (764)
T KOG1063|consen  565 VQELEG-----------HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKY  632 (764)
T ss_pred             hheecc-----------cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccce
Confidence            888888           9999999999999999999999999999998544321   111345778899999999 9999


Q ss_pred             EEEEecCCeEEEEEcCCCccccccccccCCccc-ccccCCCceEEEEeCC
Q 004581          579 LIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPR-RYQEFPGEVIGLSFSP  627 (744)
Q Consensus       579 l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~-~~~~~~~~v~~i~fsp  627 (744)
                      +++++.|.+|++|......-.        .+++ ....+...|+.+++.|
T Consensus       633 FaTaSRDK~VkVW~~~~~~d~--------~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  633 FATASRDKKVKVWEEPDLRDK--------YISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             eEEecCCceEEEEeccCchhh--------hhhhhchhccCCceeeEEeec
Confidence            999999999999999877210        1122 3445678999999988

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.2e-35  Score=253.54  Aligned_cols=297  Identities=20%  Similarity=0.268  Sum_probs=243.8

Q ss_pred             ceeEEeeccCcceeEEeeccC-CCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581           26 KQKIVLQSIDFSIWQMAVAPS-NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      ..++.+++|.++|+.+||+|- |                                                  ..||+++
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g--------------------------------------------------~ilAscg   34 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKG--------------------------------------------------VILASCG   34 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCc--------------------------------------------------eEEEeec
Confidence            356678999999999999997 6                                                  5899999


Q ss_pred             cCCeEEEEEecCCCceeEeecc-cCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC--ceEEEEEecCCCCCCCCce
Q 004581          105 DDGCVRIYRITDSDELIYHRSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--YEIYRITVGLGGLGSGPEL  181 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~  181 (744)
                      .|+.|+||+...+....+...+ .+|+..|++++|+|.|++||+|+.|.++.||.-..+  +++..+.        +|+.
T Consensus        35 ~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE--------GHEn  106 (312)
T KOG0645|consen   35 TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE--------GHEN  106 (312)
T ss_pred             CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee--------cccc
Confidence            9999999999865556655555 379999999999999999999999999999986554  4556665        8999


Q ss_pred             eEEEEEEecCC-eEEEEcCCCCEEEEeCCC---cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCC
Q 004581          182 CIWSLLSLRCG-TLVSADSTGSVQFWDSRH---GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP  257 (744)
Q Consensus       182 ~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  257 (744)
                      .|-+++|+++| +|++++.|..|-||.+..   ..++..++.|...|..+.|+|...+|++++.|.+|++|+-...    
T Consensus       107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d----  182 (312)
T KOG0645|consen  107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD----  182 (312)
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC----
Confidence            99999999999 999999999999999874   4677889999999999999999999999999999999987742    


Q ss_pred             CCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeE
Q 004581          258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL  337 (744)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i  337 (744)
                                ..|.++..+.+|+..|.+++|.         +.|                        ..|++++.|+++
T Consensus       183 ----------ddW~c~~tl~g~~~TVW~~~F~---------~~G------------------------~rl~s~sdD~tv  219 (312)
T KOG0645|consen  183 ----------DDWECVQTLDGHENTVWSLAFD---------NIG------------------------SRLVSCSDDGTV  219 (312)
T ss_pred             ----------CCeeEEEEecCccceEEEEEec---------CCC------------------------ceEEEecCCcce
Confidence                      4699999999999999999996         444                        499999999999


Q ss_pred             EEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC
Q 004581          338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA  417 (744)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (744)
                      ++|.....                                                                   +...|
T Consensus       220 ~Iw~~~~~-------------------------------------------------------------------~~~~~  232 (312)
T KOG0645|consen  220 SIWRLYTD-------------------------------------------------------------------LSGMH  232 (312)
T ss_pred             EeeeeccC-------------------------------------------------------------------cchhc
Confidence            99975421                                                                   01112


Q ss_pred             CCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC-CCEEEEEeCCCcEEEEE
Q 004581          418 SRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~~~~~dg~i~v~d  495 (744)
                      ...+..+++. +| .||+ +.|+.|++|.... ......|++-......|...|++++|.|. .++|++++.||.|++|.
T Consensus       233 sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  233 SRALYDVPWD-NG-VIASGGGDDAIRLFKESD-SPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             ccceEeeeec-cc-ceEeccCCCEEEEEEecC-CCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            3556667777 44 4555 6999999998874 22223343333444556669999999995 78999999999999998


Q ss_pred             cc
Q 004581          496 VS  497 (744)
Q Consensus       496 ~~  497 (744)
                      +.
T Consensus       310 l~  311 (312)
T KOG0645|consen  310 LE  311 (312)
T ss_pred             ec
Confidence            74

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.1e-35  Score=252.54  Aligned_cols=294  Identities=18%  Similarity=0.221  Sum_probs=240.4

Q ss_pred             eEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccCCc---eEEEEEecCCCCCCCCceeEEEEEEecCC-eEE
Q 004581          121 IYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGY---EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLV  195 (744)
Q Consensus       121 ~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~  195 (744)
                      ...+.+.+|.++|..++|+|- |..||||+.|+.||+|+...+.   +...+..       +|...|.+++|+|.| +|+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La   77 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLA   77 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEE
Confidence            344888999999999999998 8899999999999999987533   2333322       799999999999999 899


Q ss_pred             EEcCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581          196 SADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV  273 (744)
Q Consensus       196 s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  273 (744)
                      +++.|.++.||.-..  .+++.++.+|...|.|++|+++|++|++++.|..|-+|.+....              .+.+.
T Consensus        78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--------------Efec~  143 (312)
T KOG0645|consen   78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--------------EFECI  143 (312)
T ss_pred             EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--------------cEEEE
Confidence            999999999997654  47889999999999999999999999999999999999988543              47788


Q ss_pred             eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581          274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI  353 (744)
Q Consensus       274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~  353 (744)
                      ..++.|+++|..+.|.                                 |...+|++++.|.+|++|.-....       
T Consensus       144 aVL~~HtqDVK~V~WH---------------------------------Pt~dlL~S~SYDnTIk~~~~~~dd-------  183 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWH---------------------------------PTEDLLFSCSYDNTIKVYRDEDDD-------  183 (312)
T ss_pred             eeeccccccccEEEEc---------------------------------CCcceeEEeccCCeEEEEeecCCC-------
Confidence            9999999999999994                                 444599999999999999754200       


Q ss_pred             CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581          354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF  433 (744)
Q Consensus       354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  433 (744)
                                                                                       .              
T Consensus       184 -----------------------------------------------------------------d--------------  184 (312)
T KOG0645|consen  184 -----------------------------------------------------------------D--------------  184 (312)
T ss_pred             -----------------------------------------------------------------C--------------
Confidence                                                                             0              


Q ss_pred             EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccc
Q 004581          434 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD  513 (744)
Q Consensus       434 a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~  513 (744)
                                            |... ..+.+|...+.+++|++.|.+|++++.|++|+||.+.     ..+...     
T Consensus       185 ----------------------W~c~-~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~-----  231 (312)
T KOG0645|consen  185 ----------------------WECV-QTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGM-----  231 (312)
T ss_pred             ----------------------eeEE-EEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchh-----
Confidence                                  0000 2344455578899999999999999999999999965     222222     


Q ss_pred             ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc------ceEEEEecCCCCceeEEeecCCCCCeEEEEecCCe
Q 004581          514 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ------RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ  587 (744)
Q Consensus       514 ~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~  587 (744)
                           |...+..+.|.  ...||+++.|+.|++|.-...      +........|...|++++|+|.-.+.|++++.||.
T Consensus       232 -----~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  232 -----HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             -----cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence                 78899999998  458999999999999987642      12222445677899999999944789999999999


Q ss_pred             EEEEEcC
Q 004581          588 VYVFDVE  594 (744)
Q Consensus       588 v~vwd~~  594 (744)
                      |++|.+.
T Consensus       305 v~~W~l~  311 (312)
T KOG0645|consen  305 VNFWELE  311 (312)
T ss_pred             EEEEEec
Confidence            9999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.4e-35  Score=260.32  Aligned_cols=293  Identities=17%  Similarity=0.281  Sum_probs=248.1

Q ss_pred             EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581           29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC  108 (744)
Q Consensus        29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~  108 (744)
                      ..+.+|.+.|..+.|+|+|                                                  .+||+|+.|..
T Consensus        41 m~l~gh~geI~~~~F~P~g--------------------------------------------------s~~aSgG~Dr~   70 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDG--------------------------------------------------SCFASGGSDRA   70 (338)
T ss_pred             hhcCCCcceEEEEEECCCC--------------------------------------------------CeEeecCCcce
Confidence            3577999999999999999                                                  69999999999


Q ss_pred             EEEEEecCC-CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581          109 VRIYRITDS-DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL  187 (744)
Q Consensus       109 i~iwd~~~~-~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  187 (744)
                      |.+|++... +..   ..+++|.+.|..+.|.+|+..|++++.|.+|+.||+++|+++++++        +|...|.++.
T Consensus        71 I~LWnv~gdceN~---~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--------~h~~~vNs~~  139 (338)
T KOG0265|consen   71 IVLWNVYGDCENF---WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK--------GHTSFVNSLD  139 (338)
T ss_pred             EEEEeccccccce---eeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc--------cccceeeecC
Confidence            999998632 333   7788999999999999999999999999999999999999999998        7999999999


Q ss_pred             EecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581          188 SLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE  265 (744)
Q Consensus       188 ~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  265 (744)
                      -+.-|  ++.+++.|+++++||+++...++++.. .-.++++.|..++..+++|+-|+.|++||++.+..          
T Consensus       140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~----------  208 (338)
T KOG0265|consen  140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG----------  208 (338)
T ss_pred             ccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcc----------
Confidence            66666  678899999999999999888888864 67899999999999999999999999999988763          


Q ss_pred             ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581          266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF  345 (744)
Q Consensus       266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~  345 (744)
                             ...+.+|...|+.+..+         +++.                        .+.+-+.|.++++||.+.+
T Consensus       209 -------~~~lsGh~DtIt~lsls---------~~gs------------------------~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  209 -------LYTLSGHADTITGLSLS---------RYGS------------------------FLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             -------eEEeecccCceeeEEec---------cCCC------------------------ccccccccceEEEEEeccc
Confidence                   78889999999999997         5655                        8999999999999999753


Q ss_pred             CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581          346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST  425 (744)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  425 (744)
                      ..-                                                                             
T Consensus       249 ~p~-----------------------------------------------------------------------------  251 (338)
T KOG0265|consen  249 APS-----------------------------------------------------------------------------  251 (338)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581          426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF  505 (744)
Q Consensus       426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~  505 (744)
                          .+.+.        +|.-     ..       ..+.   ......+|||+++++.+|+.|..+++||......+..+
T Consensus       252 ----~R~v~--------if~g-----~~-------hnfe---knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl  304 (338)
T KOG0265|consen  252 ----QRCVK--------IFQG-----HI-------HNFE---KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL  304 (338)
T ss_pred             ----CceEE--------Eeec-----ch-------hhhh---hhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence                00000        0000     00       0000   02345679999999999999999999999888899999


Q ss_pred             ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      .+           |.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus       305 pG-----------h~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  305 PG-----------HYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CC-----------cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99           999999999999999999999999998743

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=2.4e-34  Score=280.34  Aligned_cols=508  Identities=18%  Similarity=0.182  Sum_probs=340.0

Q ss_pred             eEEecCCCeEEEEEccC--CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            8 LFSSSIDGSVSEWDLYD--LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~--~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      |+.|+.+..|.++.-.+  .+.+..+.||...|.+++|...+.                                     
T Consensus       162 la~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-------------------------------------  204 (764)
T KOG1063|consen  162 LACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-------------------------------------  204 (764)
T ss_pred             EEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-------------------------------------
Confidence            67788888888887653  456778999999999999998773                                     


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCC------------------------ceeE----eecccCccCcEEEEE
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSD------------------------ELIY----HRSLPRVSGRVLSVT  137 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~------------------------~~~~----~~~~~~h~~~V~~~~  137 (744)
                                +.-+||+++.|..||||.+.-+.                        .+.+    ...+.||++.|.++.
T Consensus       205 ----------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~  274 (764)
T KOG1063|consen  205 ----------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW  274 (764)
T ss_pred             ----------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence                      11389999999999999986222                        1111    133459999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC---cce
Q 004581          138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH---GTL  213 (744)
Q Consensus       138 ~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~---~~~  213 (744)
                      |+|++..|++++.|.++.+|...+..-+..-....+... +.....+...|+|++ .+++-+..|..++|..+.   -.+
T Consensus       275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~  353 (764)
T KOG1063|consen  275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ  353 (764)
T ss_pred             EccchhhheecccCcceEEEecCCccceEEEEEEeeccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceee
Confidence            999999999999999999998766544443333333322 456678999999999 788889999999998332   234


Q ss_pred             EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCC
Q 004581          214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPIS  293 (744)
Q Consensus       214 ~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  293 (744)
                      ...+.+|.+.|..++|+|.|.+|++.+.|.+-|+|-.-..+             ..|-.+..-+.|.++++|+++-    
T Consensus       354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-------------~~wHEiaRPQiHGyDl~c~~~v----  416 (764)
T KOG1063|consen  354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-------------QEWHEIARPQIHGYDLTCLSFV----  416 (764)
T ss_pred             ccccccccccceeeeecCCCCEEEEeccccceeeecccccc-------------cceeeecccccccccceeeehc----
Confidence            45678999999999999999999999999999999766333             3488888888999999999985    


Q ss_pred             CCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC-----CCCCcccCCCCCCCccccccce
Q 004581          294 REDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-----KFSPHEICPAPQRVPIHLVHNT  368 (744)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~  368 (744)
                           +.                        .-.+++|.....+|+|+....-     .+...........+....+..+
T Consensus       417 -----n~------------------------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL  467 (764)
T KOG1063|consen  417 -----NE------------------------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL  467 (764)
T ss_pred             -----cC------------------------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence                 21                        1279999999999999886310     0000000000000111122222


Q ss_pred             eecCCeEEE-EEeCC-e-EEEEEeecc-CCcccCCCC-C----CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc--
Q 004581          369 IFSHTSLLL-VQYSC-R-LDILSVRLE-NNVESRSSS-G----GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD--  437 (744)
Q Consensus       369 ~~s~~~~~l-~~~~~-~-i~i~~~~~~-~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~--  437 (744)
                      -.|..-.+. .+..+ . ..-...... .......+. .    .+.-...+.+ -.+|...|.+++.+|+|+++|++.  
T Consensus       468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K-LYGHGyEv~~l~~s~~gnliASaCKS  546 (764)
T KOG1063|consen  468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK-LYGHGYEVYALAISPTGNLIASACKS  546 (764)
T ss_pred             cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH-hccCceeEEEEEecCCCCEEeehhhh
Confidence            222211111 11111 0 000111000 000000000 0    0000011111 146778999999999999999942  


Q ss_pred             ----CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc-eeeeeccCcccc
Q 004581          438 ----HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEH  512 (744)
Q Consensus       438 ----~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~  512 (744)
                          ...|++|+..+       |.. ...+..|.-.|+.++|||||++|++.+.|.++.+|...... .-..|..     
T Consensus       547 ~~~ehAvI~lw~t~~-------W~~-~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-----  613 (764)
T KOG1063|consen  547 SLKEHAVIRLWNTAN-------WLQ-VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC-----  613 (764)
T ss_pred             CCccceEEEEEeccc-------hhh-hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc-----
Confidence                23577887754       222 14688888899999999999999999999999999985332 1112111     


Q ss_pred             cccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc--ceEEE-EecCCCCceeEEeecCCC----CCeEEEEecC
Q 004581          513 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWF-ISRLEGASVTAAGFPPQN----NNVLIITTSS  585 (744)
Q Consensus       513 ~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~--~~~~~-~~~~~~~~v~~l~~sp~~----~~~l~~~~~d  585 (744)
                         ...|..-|.+..|+|+++++||+|.|.+|+||.....  +.... ....++.+|++++|.|-+    +..+++|-..
T Consensus       614 ---~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~  690 (764)
T KOG1063|consen  614 ---LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK  690 (764)
T ss_pred             ---ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence               2239999999999999999999999999999999877  33222 112245799999998833    3378889999


Q ss_pred             CeEEEEEcCCCccccccccccCCc---ccccccCCCceEEEEeCCC
Q 004581          586 NQVYVFDVEAKQLGEWSMQHTFVL---PRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       586 ~~v~vwd~~~~~~~~ws~~~~~~~---~~~~~~~~~~v~~i~fspd  628 (744)
                      |.|.+|......-..  ......+   .....++.+.|..+.|+|-
T Consensus       691 GeI~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  691 GEIVLWRRKREHRQV--TVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             cEEEEEecccccccc--cceeeeeccccccccChHHhhheeEeccc
Confidence            999999965211000  0011111   1223445688999999984

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-33  Score=282.76  Aligned_cols=454  Identities=14%  Similarity=0.139  Sum_probs=321.1

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      ++|.-.+++++-..|.|.+||..-+.++..|..|.++|..++|+|++                                 
T Consensus        17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q---------------------------------   63 (1202)
T KOG0292|consen   17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ---------------------------------   63 (1202)
T ss_pred             cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC---------------------------------
Confidence            45677889999999999999999999999999999999999999999                                 


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~  160 (744)
                                       .++++|++|..|++|+..+.+.+   .+|.||-..|..+.|++.-.+++++|.|.+|+||+..
T Consensus        64 -----------------plFVSGGDDykIkVWnYk~rrcl---ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq  123 (1202)
T KOG0292|consen   64 -----------------PLFVSGGDDYKIKVWNYKTRRCL---FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ  123 (1202)
T ss_pred             -----------------CeEEecCCccEEEEEecccceeh---hhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence                             69999999999999999877777   8999999999999999999999999999999999999


Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC--------c--------c-----------
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--------G--------T-----------  212 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~--------~--------~-----------  212 (744)
                      ++.++..++        +|...|.|..|+|.. .+++++-|.+|+|||+..        +        .           
T Consensus       124 sr~~iavlt--------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D  195 (1202)
T KOG0292|consen  124 SRKCIAVLT--------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD  195 (1202)
T ss_pred             CCceEEEEe--------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence            999999999        899999999999966 999999999999999852        1        0           


Q ss_pred             --eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeec
Q 004581          213 --LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV  290 (744)
Q Consensus       213 --~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  290 (744)
                        ..+.+.+|...|+-++|+|.-..|++|+.|..|++|.+....              .|. +.+.++|.+.|.++-|. 
T Consensus       196 aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--------------aWE-vDtcrgH~nnVssvlfh-  259 (1202)
T KOG0292|consen  196 AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--------------AWE-VDTCRGHYNNVSSVLFH-  259 (1202)
T ss_pred             eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--------------cee-ehhhhcccCCcceEEec-
Confidence              124578999999999999999999999999999999998643              454 46778999999999994 


Q ss_pred             cCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceee
Q 004581          291 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF  370 (744)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  370 (744)
                                                      |..++++|.|.|++|++||+...+..+.+.       ......+.++.
T Consensus       260 --------------------------------p~q~lIlSnsEDksirVwDm~kRt~v~tfr-------rendRFW~laa  300 (1202)
T KOG0292|consen  260 --------------------------------PHQDLILSNSEDKSIRVWDMTKRTSVQTFR-------RENDRFWILAA  300 (1202)
T ss_pred             --------------------------------CccceeEecCCCccEEEEecccccceeeee-------ccCCeEEEEEe
Confidence                                            455699999999999999998766544332       12256677777


Q ss_pred             cCCeEEEEEe-CCeEEEEEeeccCCc-ccCCCCCCCCCcc-------------eEEEEEecC--CCCeEEEEEcCCCCEE
Q 004581          371 SHTSLLLVQY-SCRLDILSVRLENNV-ESRSSSGGHASTS-------------LLVQVKSKA--SRKIICSTISNSGMLF  433 (744)
Q Consensus       371 s~~~~~l~~~-~~~i~i~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~--~~~i~~~~~s~~g~~l  433 (744)
                      .|...+++.+ ++.+.++.+...... .......-..+.+             .+..+...+  ..+..++.++|....+
T Consensus       301 hP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~v  380 (1202)
T KOG0292|consen  301 HPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAV  380 (1202)
T ss_pred             cCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeE
Confidence            8877766654 456666666532211 0000000000011             122222221  2566788888876655


Q ss_pred             EEE---cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcc
Q 004581          434 AYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE  510 (744)
Q Consensus       434 a~~---~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  510 (744)
                      ..+   ..+..-++.+.....+..-  . +....  ..+. ...|-..+++.+.--.+..+.+=++.+ +..+.+..   
T Consensus       381 lics~~~n~~y~L~~ipk~~~~~~~--~-~~~~k--~tG~-~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~---  450 (1202)
T KOG0292|consen  381 LICSNLDNGEYELVQIPKDSDGVSD--G-KDVKK--GTGE-GALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLL---  450 (1202)
T ss_pred             EEEeccCCCeEEEEEecCcccccCC--c-hhhhc--CCCC-ceEEEEecceEEEEecCcceEEecccc-hhhhcccC---
Confidence            444   4444445555431111100  0 00000  0122 222322333333333345565555542 22333332   


Q ss_pred             cccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEE
Q 004581          511 EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYV  590 (744)
Q Consensus       511 ~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~v  590 (744)
                               ...+-.+-+.-+|.+|+..  ...|.+||++..+....++.   ..+.-+.||+ |..+++.-+ -.+|.|
T Consensus       451 ---------~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~---s~vkyvvws~-dm~~vAll~-Kh~i~i  514 (1202)
T KOG0292|consen  451 ---------PESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV---SKVKYVVWSN-DMSRVALLS-KHTITI  514 (1202)
T ss_pred             ---------cccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec---CceeEEEEcC-ccchhhhcc-cceEEE
Confidence                     2334556666677766553  34599999998887777753   4788899998 877766655 456777


Q ss_pred             EEcCCC
Q 004581          591 FDVEAK  596 (744)
Q Consensus       591 wd~~~~  596 (744)
                      .|.+-.
T Consensus       515 ~~kkL~  520 (1202)
T KOG0292|consen  515 ADKKLE  520 (1202)
T ss_pred             Eecchh
Confidence            775533

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-35  Score=267.87  Aligned_cols=326  Identities=15%  Similarity=0.169  Sum_probs=272.0

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      -++.|.--+..+..+.--. .......+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+....++        +
T Consensus        78 el~~g~pt~~~~~~~~wip-Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr--------G  148 (406)
T KOG0295|consen   78 ELIAGDPTGSKRTPALWIP-RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR--------G  148 (406)
T ss_pred             ccccCCCCcCccChhhcCC-CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh--------c
Confidence            4555555555555444311 112227788999999999999999999999999999999999999988888        7


Q ss_pred             CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      |...+..++|...| ++++++.|-.+++||.++ .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++-  
T Consensus       149 Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~--  226 (406)
T KOG0295|consen  149 HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY--  226 (406)
T ss_pred             cccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce--
Confidence            99999999999999 899999999999999987 67888999999999999999999999999999999999999987  


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                     ++..+.+|...|+.+...         .||.                        ++++++.|.+
T Consensus       227 ---------------cv~t~~~h~ewvr~v~v~---------~DGt------------------------i~As~s~dqt  258 (406)
T KOG0295|consen  227 ---------------CVKTFPGHSEWVRMVRVN---------QDGT------------------------IIASCSNDQT  258 (406)
T ss_pred             ---------------eEEeccCchHhEEEEEec---------CCee------------------------EEEecCCCce
Confidence                           588999999999999986         5555                        9999999999


Q ss_pred             EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK  416 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (744)
                      |++|-..+..-.                                                               ..-..
T Consensus       259 l~vW~~~t~~~k---------------------------------------------------------------~~lR~  275 (406)
T KOG0295|consen  259 LRVWVVATKQCK---------------------------------------------------------------AELRE  275 (406)
T ss_pred             EEEEEeccchhh---------------------------------------------------------------hhhhc
Confidence            999988764211                                                               01123


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc
Q 004581          417 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV  496 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~  496 (744)
                      |...+.|++|.|...+=.+..                       .  .+   .      ...+.++++++.|++|++||+
T Consensus       276 hEh~vEci~wap~~~~~~i~~-----------------------a--t~---~------~~~~~~l~s~SrDktIk~wdv  321 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISE-----------------------A--TG---S------TNGGQVLGSGSRDKTIKIWDV  321 (406)
T ss_pred             cccceEEEEecccccCcchhh-----------------------c--cC---C------CCCccEEEeecccceEEEEec
Confidence            446678888877542110000                       0  00   0      015679999999999999999


Q ss_pred             cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581          497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN  576 (744)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~  576 (744)
                      .+|.++.++.+           |...|..++|+|.|+||+++.+|+++++||+++.++...++ .|..-+++++|+. +.
T Consensus       322 ~tg~cL~tL~g-----------hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~-~~  388 (406)
T KOG0295|consen  322 STGMCLFTLVG-----------HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHK-TA  388 (406)
T ss_pred             cCCeEEEEEec-----------ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCC-CC
Confidence            99999999999           99999999999999999999999999999999999988887 5667899999999 88


Q ss_pred             CeEEEEecCCeEEEEEc
Q 004581          577 NVLIITTSSNQVYVFDV  593 (744)
Q Consensus       577 ~~l~~~~~d~~v~vwd~  593 (744)
                      .++++|+-|.++++|.-
T Consensus       389 p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  389 PYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ceEEeccccceeeeeec
Confidence            89999999999999963

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.7e-36  Score=272.40  Aligned_cols=295  Identities=17%  Similarity=0.236  Sum_probs=242.1

Q ss_pred             eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581           28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG  107 (744)
Q Consensus        28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg  107 (744)
                      .+.+..|...||-+.||++|                                                  ++||+++.|.
T Consensus       217 ~qil~~htdEVWfl~FS~nG--------------------------------------------------kyLAsaSkD~  246 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNG--------------------------------------------------KYLASASKDS  246 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCC--------------------------------------------------eeEeeccCCc
Confidence            34577899999999999999                                                  6999999999


Q ss_pred             eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581          108 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL  187 (744)
Q Consensus       108 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  187 (744)
                      +..||++.....+...+++.+|..+|..+.||||.++|++|+.|..+++||+.+|...+.+..       ++...+.+++
T Consensus       247 Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-------~~~~S~~sc~  319 (519)
T KOG0293|consen  247 TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-------GLGFSVSSCA  319 (519)
T ss_pred             eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc-------CcCCCcceeE
Confidence            999999987777888899999999999999999999999999999999999999999988874       4678899999


Q ss_pred             EecCC-eEEEEcCCCCEEEEeCCCcceEEEeecc-ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581          188 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH-KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE  265 (744)
Q Consensus       188 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  265 (744)
                      |.||| .+++|+.|++|..||++ |..+...++- ...|.+++.++||+++++.+.|..|++++......          
T Consensus       320 W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d----------  388 (519)
T KOG0293|consen  320 WCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD----------  388 (519)
T ss_pred             EccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh----------
Confidence            99999 89999999999999998 6665555543 24577777777777777777776666666544210          


Q ss_pred             ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581          266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF  345 (744)
Q Consensus       266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~  345 (744)
                                                                                                      
T Consensus       389 --------------------------------------------------------------------------------  388 (519)
T KOG0293|consen  389 --------------------------------------------------------------------------------  388 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581          346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST  425 (744)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  425 (744)
                                                                                                      
T Consensus       389 --------------------------------------------------------------------------------  388 (519)
T KOG0293|consen  389 --------------------------------------------------------------------------------  388 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581          426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF  505 (744)
Q Consensus       426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~  505 (744)
                                                         ..+.....+++++.+|.|++++++.-.+..+++||++..++++.+
T Consensus       389 -----------------------------------r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  389 -----------------------------------RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             -----------------------------------hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence                                               000001116777778888888888888889999999988999999


Q ss_pred             ccCcccccccCCCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec
Q 004581          506 TPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS  584 (744)
Q Consensus       506 ~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~  584 (744)
                      .+++.         ..-|-.-||-- +..++|+|+.|+.|+||+..+++++..+.+ |...|++++|+|.+..++|+|++
T Consensus       434 ~Ghkq---------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVswNP~~p~m~ASasD  503 (519)
T KOG0293|consen  434 FGHKQ---------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVSWNPADPEMFASASD  503 (519)
T ss_pred             hcccc---------cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-CcceeeEEecCCCCHHHhhccCC
Confidence            88422         12233345544 558999999999999999999999999976 67899999999999999999999


Q ss_pred             CCeEEEEEcCC
Q 004581          585 SNQVYVFDVEA  595 (744)
Q Consensus       585 d~~v~vwd~~~  595 (744)
                      ||+|+||....
T Consensus       504 DgtIRIWg~~~  514 (519)
T KOG0293|consen  504 DGTIRIWGPSD  514 (519)
T ss_pred             CCeEEEecCCc
Confidence            99999998763

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.5e-37  Score=278.52  Aligned_cols=275  Identities=18%  Similarity=0.279  Sum_probs=237.7

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      |.|.|.+|++|+..|.+.+|+..+..-...++.|..+|.+|.|+++|                                 
T Consensus       104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g---------------------------------  150 (464)
T KOG0284|consen  104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG---------------------------------  150 (464)
T ss_pred             EcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC---------------------------------
Confidence            67889999999999999999987655555678999999999999999                                 


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCcc-CcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSSDGYIRSWDA  159 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~dg~~l~t~~~dg~i~vwd~  159 (744)
                                       .++++|..+|.|++|+.. -..+   +.+.+|. ..|++++|||+...++|++.||+|+|||.
T Consensus       151 -----------------~wmiSgD~gG~iKyWqpn-mnnV---k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf  209 (464)
T KOG0284|consen  151 -----------------TWMISGDKGGMIKYWQPN-MNNV---KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF  209 (464)
T ss_pred             -----------------CEEEEcCCCceEEecccc-hhhh---HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence                             699999999999999986 3333   5566555 99999999999999999999999999999


Q ss_pred             cCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEe
Q 004581          160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~  238 (744)
                      ...+....+.        +|.-.|.++.|+|.. .|++|+.|+.|++||.++|+++.++.+|...|..+.|++++++|++
T Consensus       210 ~~~kee~vL~--------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt  281 (464)
T KOG0284|consen  210 RMPKEERVLR--------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT  281 (464)
T ss_pred             cCCchhheec--------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE
Confidence            8888877777        899999999999987 9999999999999999999999999999999999999999999999


Q ss_pred             ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581          239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH  318 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (744)
                      ++.|..++++|++....                 +..+++|..+|+++++.         |                   
T Consensus       282 ~skD~~~kv~DiR~mkE-----------------l~~~r~Hkkdv~~~~Wh---------P-------------------  316 (464)
T KOG0284|consen  282 GSKDQSCKVFDIRTMKE-----------------LFTYRGHKKDVTSLTWH---------P-------------------  316 (464)
T ss_pred             ccCCceEEEEehhHhHH-----------------HHHhhcchhhheeeccc---------c-------------------
Confidence            99999999999996542                 67889999999999987         2                   


Q ss_pred             ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581          319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR  398 (744)
Q Consensus       319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~  398 (744)
                          -...+|.+|+.||.|..|.+....                                                    
T Consensus       317 ----~~~~lftsgg~Dgsvvh~~v~~~~----------------------------------------------------  340 (464)
T KOG0284|consen  317 ----LNESLFTSGGSDGSVVHWVVGLEE----------------------------------------------------  340 (464)
T ss_pred             ----ccccceeeccCCCceEEEeccccc----------------------------------------------------
Confidence                223489999999999999886211                                                    


Q ss_pred             CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeec
Q 004581          399 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK  448 (744)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~  448 (744)
                                .+..+...|...|.+++++|=|.+|+++ .|.++++|.-..
T Consensus       341 ----------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  341 ----------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             ----------cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence                      1222334566788899999999999995 788888887654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.2e-36  Score=282.56  Aligned_cols=291  Identities=17%  Similarity=0.218  Sum_probs=244.9

Q ss_pred             ceeEEeeccCcceeEEeecc-CCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581           26 KQKIVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      +.+.++.+|...|+++.|.| .+                                                  .+|++++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~--------------------------------------------------hLlLS~g  234 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKG--------------------------------------------------HLLLSGG  234 (503)
T ss_pred             hheeeccCCccccchhhhcccee--------------------------------------------------eEEEecC
Confidence            56678999999999999999 55                                                  5899999


Q ss_pred             cCCeEEEEEecC-CCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeE
Q 004581          105 DDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI  183 (744)
Q Consensus       105 ~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  183 (744)
                      -|+.|+||++.. ++.+   +++.+|..+|..++|+++|..++|++.|+.|++||+++|+++.++.         ....+
T Consensus       235 mD~~vklW~vy~~~~~l---rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~---------~~~~~  302 (503)
T KOG0282|consen  235 MDGLVKLWNVYDDRRCL---RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH---------LDKVP  302 (503)
T ss_pred             CCceEEEEEEecCccee---hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe---------cCCCc
Confidence            999999999985 4444   9999999999999999999999999999999999999999999997         56778


Q ss_pred             EEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCC
Q 004581          184 WSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL  261 (744)
Q Consensus       184 ~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  261 (744)
                      +++.|.|++  .+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.++++.+.|+++++|+......      
T Consensus       303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~------  376 (503)
T KOG0282|consen  303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP------  376 (503)
T ss_pred             eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc------
Confidence            999999998  799999999999999999999999999999999999999999999999999999999876431      


Q ss_pred             CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581          262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC  341 (744)
Q Consensus       262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~  341 (744)
                                 +.          -++.                                                     
T Consensus       377 -----------ik----------~i~~-----------------------------------------------------  382 (503)
T KOG0282|consen  377 -----------IK----------NIAD-----------------------------------------------------  382 (503)
T ss_pred             -----------ch----------hhcc-----------------------------------------------------
Confidence                       00          0000                                                     


Q ss_pred             cCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 004581          342 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI  421 (744)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  421 (744)
                                                                                                .+....
T Consensus       383 --------------------------------------------------------------------------~~~hsm  388 (503)
T KOG0282|consen  383 --------------------------------------------------------------------------PEMHTM  388 (503)
T ss_pred             --------------------------------------------------------------------------hhhccC
Confidence                                                                                      000223


Q ss_pred             EEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccc--cccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581          422 ICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       422 ~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~spd~~~l~~~~~dg~i~v~d~~~  498 (744)
                      .+++.+|+++++++ +-++.+.+|.+......     -.+..+.+|..  ..+.+.|||||.+|++|+.||.+.+||..+
T Consensus       389 P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-----nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  389 PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-----NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             cceecCCCCCeehhhccCceEEEEeccccccc-----CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence            45667788888777 67778888876541111     11244555543  677889999999999999999999999999


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCCC-CEEEEEeCCCcEEEEE
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDG-QWLAAVNCFGDVYIFN  548 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~las~~~dg~i~iwd  548 (744)
                      -+++..++.           |...+..+.|+|.. ..+|+++.||.|++|+
T Consensus       464 ~kl~~~lka-----------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  464 TKLVSKLKA-----------HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhhhhcccc-----------CCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999998           89999999999954 4789999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-32  Score=275.30  Aligned_cols=438  Identities=13%  Similarity=0.175  Sum_probs=308.9

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      .++.++-..|.|++||..-+..+   ..|..|.++|..++|+|++.++++|+.|..|+||+..+.+++.++.        
T Consensus        22 PwILtslHsG~IQlWDYRM~tli---~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~--------   90 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMGTLI---DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL--------   90 (1202)
T ss_pred             CEEEEeecCceeeeehhhhhhHH---hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc--------
Confidence            68999999999999999866655   8999999999999999999999999999999999999999999998        


Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      +|-..|..+.|++.- .|++++.|.+|+||+..+++++..+++|..-|.|..|+|....+++++.|.+|++||+..-...
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk  170 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK  170 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence            899999999999988 9999999999999999999999999999999999999999999999999999999999764321


Q ss_pred             CC------CCCCc------ccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581          257 PN------DGLSS------SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG  324 (744)
Q Consensus       257 ~~------~~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  324 (744)
                      ..      +....      ......-.....+.+|...|.-.+|.                                 |.
T Consensus       171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh---------------------------------pT  217 (1202)
T KOG0292|consen  171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH---------------------------------PT  217 (1202)
T ss_pred             CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec---------------------------------CC
Confidence            00      00000      01112334455678898888888884                                 45


Q ss_pred             CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe--CCeEEEEEeeccCCcccCCCCC
Q 004581          325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY--SCRLDILSVRLENNVESRSSSG  402 (744)
Q Consensus       325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~i~i~~~~~~~~~~~~~~~~  402 (744)
                      .++++||+.|..|++|.+...+....     ...+.|.+.|.++.|+|...++.+.  +..+++|++....         
T Consensus       218 lpliVSG~DDRqVKlWrmnetKaWEv-----DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---------  283 (1202)
T KOG0292|consen  218 LPLIVSGADDRQVKLWRMNETKAWEV-----DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---------  283 (1202)
T ss_pred             cceEEecCCcceeeEEEeccccceee-----hhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---------
Confidence            56999999999999999987543321     2345677899999999987777765  4599999999766         


Q ss_pred             CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE
Q 004581          403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL  482 (744)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l  482 (744)
                            .+..+... ..+...++.+|..+++|+|-|+.+.+|.++.   ..               ++  .+.  .++.|
T Consensus       284 ------~v~tfrre-ndRFW~laahP~lNLfAAgHDsGm~VFkleR---Er---------------pa--~~v--~~n~L  334 (1202)
T KOG0292|consen  284 ------SVQTFRRE-NDRFWILAAHPELNLFAAGHDSGMIVFKLER---ER---------------PA--YAV--NGNGL  334 (1202)
T ss_pred             ------ceeeeecc-CCeEEEEEecCCcceeeeecCCceEEEEEcc---cC---------------ce--EEE--cCCEE
Confidence                  34444433 4778899999999999999998888888753   11               12  122  34444


Q ss_pred             EEEeCCCcEEEEEccCCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEE-EEeCC-CcEEEEECCCcceEE-E
Q 004581          483 IIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA-AVNCF-GDVYIFNLEIQRQHW-F  557 (744)
Q Consensus       483 ~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~la-s~~~d-g~i~iwd~~~~~~~~-~  557 (744)
                      ...- |..|+-+|+.+.+-  +..+....        ....++.++.++|..+.+. +.+.+ |.-.++.+.....-. .
T Consensus       335 fYvk-d~~i~~~d~~t~~d~~v~~lr~~g--------~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~  405 (1202)
T KOG0292|consen  335 FYVK-DRFIRSYDLRTQKDTAVASLRRPG--------TLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD  405 (1202)
T ss_pred             EEEc-cceEEeeeccccccceeEeccCCC--------cccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC
Confidence            4444 88899999987543  33333311        1346788999999766444 43333 344444443221000 0


Q ss_pred             Eec-CCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEE
Q 004581          558 ISR-LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVII  636 (744)
Q Consensus       558 ~~~-~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~  636 (744)
                      .+. ..+....+ .|-. .+++.+.--.+.++.+=++.+...            +.+. ....+..|.+.-.|+   +++
T Consensus       406 ~~~~~k~tG~~a-~fva-rNrfavl~k~~~~v~ik~l~N~vt------------kkl~-~~~~~~~IF~ag~g~---lll  467 (1202)
T KOG0292|consen  406 GKDVKKGTGEGA-LFVA-RNRFAVLDKSNEQVVIKNLKNKVT------------KKLL-LPESTDDIFYAGTGN---LLL  467 (1202)
T ss_pred             chhhhcCCCCce-EEEE-ecceEEEEecCcceEEecccchhh------------hccc-CcccccceeeccCcc---EEE
Confidence            000 00011222 2322 223222222244555555554432            1111 123556666665544   777


Q ss_pred             EcCceEEEEeCCC
Q 004581          637 YSARAMCVIDFGR  649 (744)
Q Consensus       637 ~~~~~~~~~~~~~  649 (744)
                      .+...+..+|+.+
T Consensus       468 ~~~~~v~lfdvQq  480 (1202)
T KOG0292|consen  468 RSPDSVTLFDVQQ  480 (1202)
T ss_pred             EcCCeEEEEEeec
Confidence            8888888888755

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=257.64  Aligned_cols=456  Identities=15%  Similarity=0.199  Sum_probs=321.2

Q ss_pred             eEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccc
Q 004581           16 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV   95 (744)
Q Consensus        16 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (744)
                      .|++||..+..-++.+......|.|++||+...-                                              
T Consensus       135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G----------------------------------------------  168 (626)
T KOG2106|consen  135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG----------------------------------------------  168 (626)
T ss_pred             eeeecccccceeeeeeccccccceeeeecccCCC----------------------------------------------
Confidence            6999999998889988888899999999986621                                              


Q ss_pred             cCCeEEEE--ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCC
Q 004581           96 EDRRVALA--CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG  173 (744)
Q Consensus        96 ~~~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~  173 (744)
                        .+|+.-  +.+..+.+||.+.+..+   .....-...|....|+|.+..|+..+..|.+..|+.+.+....+...-  
T Consensus       169 --~~l~~vD~s~~h~lSVWdWqk~~~~---~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~f--  241 (626)
T KOG2106|consen  169 --SLLCAVDDSNPHMLSVWDWQKKAKL---GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIF--  241 (626)
T ss_pred             --ceEEEecCCCccccchhhchhhhcc---CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecc--
Confidence              233333  45667899999865555   445556678999999998877766666789999999988776654321  


Q ss_pred             CCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581          174 GLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       174 ~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                        .......|.|++|.++|.+++|+++|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-.
T Consensus       242 --ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~  318 (626)
T KOG2106|consen  242 --EKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYR  318 (626)
T ss_pred             --ccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccc
Confidence              11344889999999999999999999999999988877777779999999999999996 566999999999993322


Q ss_pred             cCCCCC------CC---------CcccccceEEEEe--------eeeeccCcceeeeeeccCCCCCCCCcccccccCCCC
Q 004581          254 SIGPND------GL---------SSSEVIKKWIYVG--------SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE  310 (744)
Q Consensus       254 ~~~~~~------~~---------~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~  310 (744)
                      .....+      .+         ...+.........        ...+|......++.                      
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~----------------------  376 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT----------------------  376 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc----------------------
Confidence            211000      00         0000111111111        11233333333333                      


Q ss_pred             CCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEee
Q 004581          311 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR  390 (744)
Q Consensus       311 ~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~  390 (744)
                                 ++..+.+++++.|+.+++|+-.  +....        ......+.++.|.|.| .++.+...-+.+-++
T Consensus       377 -----------hps~~q~~T~gqdk~v~lW~~~--k~~wt--------~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  377 -----------HPSKNQLLTCGQDKHVRLWNDH--KLEWT--------KIIEDPAECADFHPSG-VVAVGTATGRWFVLD  434 (626)
T ss_pred             -----------CCChhheeeccCcceEEEccCC--ceeEE--------EEecCceeEeeccCcc-eEEEeeccceEEEEe
Confidence                       5566799999999999999922  11111        1122567789999999 777665544444444


Q ss_pred             ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCccccc
Q 004581          391 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQF  469 (744)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (744)
                      ..+              +.+.++... ..++.+++++|+|.+||++ .|+.|++|.+..  .+.+.-..  ....+  .+
T Consensus       435 ~e~--------------~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~--~g~~y~r~--~k~~g--s~  493 (626)
T KOG2106|consen  435 TET--------------QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA--NGRKYSRV--GKCSG--SP  493 (626)
T ss_pred             ccc--------------ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC--CCcEEEEe--eeecC--ce
Confidence            333              135555555 7899999999999999995 899999999986  23332111  22333  69


Q ss_pred             ccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccc-------ccccCCCCCCceEEEEECCCCCEEEEEeCCC
Q 004581          470 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE-------HDREIQPSEPPITKMFTSSDGQWLAAVNCFG  542 (744)
Q Consensus       470 v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~l~~spdg~~las~~~dg  542 (744)
                      ++.+.||+|+++|.+.+-|-.|..|....-+.+...+.....       .+.-...+...|..++-|.+.+++|+|+..|
T Consensus       494 ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g  573 (626)
T KOG2106|consen  494 ITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFG  573 (626)
T ss_pred             eEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCc
Confidence            999999999999999999999999954322222211110000       0001134677788888999999999999999


Q ss_pred             cEEEEECCCcceE--EEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581          543 DVYIFNLEIQRQH--WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       543 ~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~  593 (744)
                      +|++|...-.+..  ......|++.|++++|.- +...|++.+.|.+|..|++
T Consensus       574 ~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  574 KVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eEEEEccccCCCcccceeeccccceeEEEEEee-CCceEEecCCCceEEEEEe
Confidence            9999987643332  222345778999999999 7788888889999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=260.11  Aligned_cols=278  Identities=18%  Similarity=0.279  Sum_probs=244.1

Q ss_pred             CCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN   82 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (744)
                      |-+.++++|+.|++|.|||+.+|+++.++.||-..|..+++|+-.                                   
T Consensus       161 P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-----------------------------------  205 (460)
T KOG0285|consen  161 PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-----------------------------------  205 (460)
T ss_pred             CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-----------------------------------
Confidence            456789999999999999999999999999999999999999988                                   


Q ss_pred             CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581           83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG  162 (744)
Q Consensus        83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~  162 (744)
                                     .+|+++++|+.|+-||++.++.+   +.+.||-..|.|++.+|.-+.|+||+.|.++||||+++.
T Consensus       206 ---------------pYlFs~gedk~VKCwDLe~nkvI---R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr  267 (460)
T KOG0285|consen  206 ---------------PYLFSAGEDKQVKCWDLEYNKVI---RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR  267 (460)
T ss_pred             ---------------ceEEEecCCCeeEEEechhhhhH---HHhccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence                           69999999999999999977766   889999999999999999999999999999999999999


Q ss_pred             ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC
Q 004581          163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS  241 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~  241 (744)
                      ..+..+.        +|...|..+.+.|-. ++++|+.|++|++||+..|+...++..|...|.+++.+|....+++++.
T Consensus       268 ~~V~~l~--------GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  268 ASVHVLS--------GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             ceEEEec--------CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence            9999998        899999999999866 9999999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581          242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      |. |+.|++..+.+                 +..+.+|..-|.+++..         .|+                    
T Consensus       340 dn-ik~w~~p~g~f-----------------~~nlsgh~~iintl~~n---------sD~--------------------  372 (460)
T KOG0285|consen  340 DN-IKQWKLPEGEF-----------------LQNLSGHNAIINTLSVN---------SDG--------------------  372 (460)
T ss_pred             cc-ceeccCCccch-----------------hhccccccceeeeeeec---------cCc--------------------
Confidence            75 99999998874                 66789999999999986         444                    


Q ss_pred             cCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCC
Q 004581          322 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS  401 (744)
Q Consensus       322 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~  401 (744)
                           ++++|+..|.+.+||.++...++.......|.                        +                  
T Consensus       373 -----v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG------------------------S------------------  405 (460)
T KOG0285|consen  373 -----VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG------------------------S------------------  405 (460)
T ss_pred             -----eEEEcCCceEEEEEecCcCcccccccccccCC------------------------c------------------
Confidence                 89999999999999998866554332111110                        0                  


Q ss_pred             CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeec
Q 004581          402 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK  448 (744)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~  448 (744)
                                   ......|.+.+|...|..|+++ .|.+|++|.-..
T Consensus       406 -------------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 -------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             -------------cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence                         1123668889999999888875 888999997654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.6e-34  Score=256.98  Aligned_cols=316  Identities=13%  Similarity=0.161  Sum_probs=258.9

Q ss_pred             CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      +|...++++||.|..-.+|++.+|.....+.+|...|.|+.||.||                                  
T Consensus        73 ~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg----------------------------------  118 (399)
T KOG0296|consen   73 HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG----------------------------------  118 (399)
T ss_pred             CCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc----------------------------------
Confidence            4656778999999999999999999999999999999999999999                                  


Q ss_pred             CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581           82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL  161 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~  161 (744)
                                      .+||+|.-+|.|+||+..++...   ..+...-+.|.=+.|+|-+..|+.|+.||.+.+|.+.+
T Consensus       119 ----------------tlLATGdmsG~v~v~~~stg~~~---~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~  179 (399)
T KOG0296|consen  119 ----------------TLLATGDMSGKVLVFKVSTGGEQ---WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS  179 (399)
T ss_pred             ----------------eEEEecCCCccEEEEEcccCceE---EEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence                            69999999999999999977765   45555566788899999999999999999999999998


Q ss_pred             CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec-cccceeEEEEcCCCCEEEee
Q 004581          162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~~~  239 (744)
                      +...+.+.        +|..++++=.|.|+| +++++..||+|++||..+++++..+.. ......++.++..+..++.|
T Consensus       180 ~~~~kv~~--------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g  251 (399)
T KOG0296|consen  180 QALCKVMS--------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG  251 (399)
T ss_pred             cceeeEec--------CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence            87777777        799999999999999 999999999999999999999988863 34567899999999999999


Q ss_pred             cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeee--------eccCcceeeeeeccCCCCCCCCcccccccCCCCC
Q 004581          240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR--------AHTHDVRALTVAVPISREDPLPEDKVKRSRGREK  311 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~  311 (744)
                      ..++.+++-+..+++.                 +....        .+.+.+.++.+.         |-           
T Consensus       252 ~~e~~~~~~~~~sgKV-----------------v~~~n~~~~~l~~~~e~~~esve~~---------~~-----------  294 (399)
T KOG0296|consen  252 NSEGVACGVNNGSGKV-----------------VNCNNGTVPELKPSQEELDESVESI---------PS-----------  294 (399)
T ss_pred             cCCccEEEEccccceE-----------------EEecCCCCccccccchhhhhhhhhc---------cc-----------
Confidence            9999999888777652                 11111        233333333332         00           


Q ss_pred             CccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeec
Q 004581          312 PIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL  391 (744)
Q Consensus       312 ~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~  391 (744)
                                ...-++.++|+.||+|.+||+...+                                             
T Consensus       295 ----------ss~lpL~A~G~vdG~i~iyD~a~~~---------------------------------------------  319 (399)
T KOG0296|consen  295 ----------SSKLPLAACGSVDGTIAIYDLAAST---------------------------------------------  319 (399)
T ss_pred             ----------ccccchhhcccccceEEEEecccch---------------------------------------------
Confidence                      0112256666666666666664311                                             


Q ss_pred             cCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCccccccc
Q 004581          392 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAH  471 (744)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  471 (744)
                                                                                   .       +....|..+|.
T Consensus       320 -------------------------------------------------------------~-------R~~c~he~~V~  331 (399)
T KOG0296|consen  320 -------------------------------------------------------------L-------RHICEHEDGVT  331 (399)
T ss_pred             -------------------------------------------------------------h-------heeccCCCceE
Confidence                                                                         0       11223344688


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          472 SMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       472 ~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      .+.|-+ ..+|++++.+|.|+.||..+|+++.++.+           |...|.+++++|+++++++++.|++.+||+..
T Consensus       332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-----------H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG-----------HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcC-cchheeeccCceEEeeeccccceEEEEec-----------CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            888987 78999999999999999999999999999           99999999999999999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.3e-35  Score=261.48  Aligned_cols=292  Identities=17%  Similarity=0.236  Sum_probs=252.4

Q ss_pred             eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581          121 IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS  199 (744)
Q Consensus       121 ~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  199 (744)
                      ...+.+.+|.+.|.|+++.|..++++||+.|++|+|||+.+|+...++.        +|...|..+++++-. ++++++.
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt--------Ghi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT--------GHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec--------chhheeeeeeecccCceEEEecC
Confidence            3447889999999999999999999999999999999999999999998        799999999999988 9999999


Q ss_pred             CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581          200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH  279 (744)
Q Consensus       200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  279 (744)
                      |+.|+.||++..+.++.+.+|-..|.|++..|.-..|++|+.|.++++||+++..                 .+..+.+|
T Consensus       214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-----------------~V~~l~GH  276 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-----------------SVHVLSGH  276 (460)
T ss_pred             CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-----------------eEEEecCC
Confidence            9999999999999999999999999999999999999999999999999999977                 37889999


Q ss_pred             cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581          280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR  359 (744)
Q Consensus       280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  359 (744)
                      ..+|.++.+.         |.                        .+.+++|+.|++|++||+...+.            
T Consensus       277 ~~~V~~V~~~---------~~------------------------dpqvit~S~D~tvrlWDl~agkt------------  311 (460)
T KOG0285|consen  277 TNPVASVMCQ---------PT------------------------DPQVITGSHDSTVRLWDLRAGKT------------  311 (460)
T ss_pred             CCcceeEEee---------cC------------------------CCceEEecCCceEEEeeeccCce------------
Confidence            9999999885         22                        23799999999999999874220            


Q ss_pred             CccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 004581          360 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV  439 (744)
Q Consensus       360 ~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~  439 (744)
                                                                                               +      
T Consensus       312 -------------------------------------------------------------------------~------  312 (460)
T KOG0285|consen  312 -------------------------------------------------------------------------M------  312 (460)
T ss_pred             -------------------------------------------------------------------------e------
Confidence                                                                                     0      


Q ss_pred             ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581          440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS  519 (744)
Q Consensus       440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  519 (744)
                                           ..+..|...+.+++.+|....+|+++.|. |+-|++..|..+..+.+           |
T Consensus       313 ---------------------~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsg-----------h  359 (460)
T KOG0285|consen  313 ---------------------ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSG-----------H  359 (460)
T ss_pred             ---------------------EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccc-----------c
Confidence                                 11122333678888899999999998875 99999999999999888           8


Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEe---cC----CCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS---RL----EGASVTAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~---~~----~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                      ...|++++...|| ++++|+.+|.+..||.+++-......   ..    ....|.+.+|.. .+..|+++..|.+|++|.
T Consensus       360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMYK  437 (460)
T ss_pred             cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEEe
Confidence            9999999998887 78889999999999999886543331   11    125789999999 999999999999999997


Q ss_pred             cCCC
Q 004581          593 VEAK  596 (744)
Q Consensus       593 ~~~~  596 (744)
                      -+..
T Consensus       438 eDe~  441 (460)
T KOG0285|consen  438 EDEH  441 (460)
T ss_pred             cccc
Confidence            5533

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-33  Score=267.89  Aligned_cols=448  Identities=17%  Similarity=0.167  Sum_probs=332.4

Q ss_pred             eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581           28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG  107 (744)
Q Consensus        28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg  107 (744)
                      .+.+..+...|.|+.|+|..                                                  ..+.++-..|
T Consensus         6 krk~~~rSdRVKsVd~HPte--------------------------------------------------Pw~la~LynG   35 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTE--------------------------------------------------PWILAALYNG   35 (794)
T ss_pred             hhHhhccCCceeeeecCCCC--------------------------------------------------ceEEEeeecC
Confidence            44566789999999999998                                                  6888888999


Q ss_pred             eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581          108 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL  187 (744)
Q Consensus       108 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  187 (744)
                      .|.|||.++...+   +.+.-..-+|.+..|-+-.+++++|+.|..||||+..+++.+..+.        .|...|.+++
T Consensus        36 ~V~IWnyetqtmV---ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe--------AH~DyIR~ia  104 (794)
T KOG0276|consen   36 DVQIWNYETQTMV---KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE--------AHSDYIRSIA  104 (794)
T ss_pred             eeEEEecccceee---eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEee--------ccccceeeee
Confidence            9999999866555   7777778899999999999999999999999999999999999999        7999999999


Q ss_pred             EecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEEEEEcccCcCCCCCCCCcc
Q 004581          188 SLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASCESIGPNDGLSSS  264 (744)
Q Consensus       188 ~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  264 (744)
                      .+|.. ++++++.|-+|++||.+. ..+.+++.+|..-|.+++|+| |.+.+++++.|++|++|.+....          
T Consensus       105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----------  174 (794)
T KOG0276|consen  105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----------  174 (794)
T ss_pred             ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC----------
Confidence            99999 999999999999999986 467899999999999999999 56899999999999999998876          


Q ss_pred             cccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          265 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       265 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                             +..++.+|...|.++.+-         +.                      ++.++|++|+.|..+++||..+
T Consensus       175 -------~nfTl~gHekGVN~Vdyy---------~~----------------------gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  175 -------PNFTLEGHEKGVNCVDYY---------TG----------------------GDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             -------CceeeeccccCcceEEec---------cC----------------------CCcceEEecCCCceEEEeecch
Confidence                   367889999999999995         22                      2346999999999999999987


Q ss_pred             cCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC--CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeE
Q 004581          345 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII  422 (744)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  422 (744)
                      ..-.       .....|.+.|..+.|.|.-.++++++  ++++||.-.+-..+               ..+. -+-.++.
T Consensus       217 k~CV-------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE---------------~tLn-~gleRvW  273 (794)
T KOG0276|consen  217 KSCV-------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE---------------KTLN-YGLERVW  273 (794)
T ss_pred             HHHH-------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh---------------hhhh-cCCceEE
Confidence            5433       23345668899999999999999875  59999986654321               1111 2236677


Q ss_pred             EEEEcCCCCEEEEEcCCceEEEEeecCC-------CCCceEEeeec--------------------------cCCccccc
Q 004581          423 CSTISNSGMLFAYSDHVKPSLFELKKGK-------VGQGEWIINKR--------------------------QLPRKLQF  469 (744)
Q Consensus       423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~-------~~~~~~~~~~~--------------------------~~~~~~~~  469 (744)
                      |++-.+.+..+++|.|....+..+...+       .+..+|.....                          ++....-.
T Consensus       274 ~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiy  353 (794)
T KOG0276|consen  274 CIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIY  353 (794)
T ss_pred             EEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccc
Confidence            7777777777777755555544443211       12233432210                          00000002


Q ss_pred             ccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581          470 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       470 v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~  549 (744)
                      ...++-||+|+++++++ ||.-.||-.-..+-    +            +.+.-....|++|.+..|+-..++.|.++  
T Consensus       354 Pq~L~hsPNGrfV~Vcg-dGEyiIyTala~Rn----K------------~fG~~~eFvw~~dsne~avRes~~~vki~--  414 (794)
T KOG0276|consen  354 PQTLAHSPNGRFVVVCG-DGEYIIYTALALRN----K------------AFGSGLEFVWAADSNEFAVRESNGNVKIF--  414 (794)
T ss_pred             hHHhccCCCCcEEEEec-CccEEEEEeeehhh----c------------ccccceeEEEcCCCCeEEEEecCCceEEE--
Confidence            34566789999888776 77777776321111    1            35566788999998889998889999999  


Q ss_pred             CCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCC
Q 004581          550 EIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSP  629 (744)
Q Consensus       550 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg  629 (744)
                      ++.+....+...   .+ +..+.  .|.+|.+. .++.+.+||.+++++.           ++   -.-...++.|+.+|
T Consensus       415 knfke~ksi~~~---~~-~e~i~--gg~Llg~~-ss~~~~fydW~~~~lV-----------rr---I~v~~k~v~w~d~g  473 (794)
T KOG0276|consen  415 KNFKEHKSIRPD---MS-AEGIF--GGPLLGVR-SSDFLCFYDWESGELV-----------RR---IEVTSKHVYWSDNG  473 (794)
T ss_pred             ecceeccccccc---cc-eeeec--CCceEEEE-eCCeEEEEEcccceEE-----------EE---EeeccceeEEecCC
Confidence            566555444321   11 22232  35555554 4667999999999762           22   23456678998874


Q ss_pred             CCcEEEEEcCceEEEEeCCC
Q 004581          630 SSSSVIIYSARAMCVIDFGR  649 (744)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~  649 (744)
                        ..+.+.+...++.+.+++
T Consensus       474 --~lVai~~d~Sfyil~~n~  491 (794)
T KOG0276|consen  474 --ELVAIAGDDSFYILKFNA  491 (794)
T ss_pred             --CEEEEEecCceeEEEecH
Confidence              566667777777666644

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.6e-36  Score=272.29  Aligned_cols=284  Identities=15%  Similarity=0.227  Sum_probs=242.9

Q ss_pred             CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW  206 (744)
Q Consensus       128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw  206 (744)
                      .-+..|..+.|.|+|+.|++|+..|.+.+|+..+-.....        ...|+..|.++.|++++ .+++|+.+|.|++|
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti--------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyW  165 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI--------LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYW  165 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH--------hhhhcccceeEEEccCCCEEEEcCCCceEEec
Confidence            3456899999999999999999999999999632111111        12699999999999999 89999999999999


Q ss_pred             eCCCcceEEEeeccc-cceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCccee
Q 004581          207 DSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA  285 (744)
Q Consensus       207 d~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  285 (744)
                      +.. ...++.+.+|. ..|.+++|+|+...+++++.||+|+|||......                 ...+++|.-+|++
T Consensus       166 qpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----------------e~vL~GHgwdVks  227 (464)
T KOG0284|consen  166 QPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----------------ERVLRGHGWDVKS  227 (464)
T ss_pred             ccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-----------------hheeccCCCCcce
Confidence            987 44455566555 8999999999999999999999999999987653                 4567999999999


Q ss_pred             eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581          286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV  365 (744)
Q Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v  365 (744)
                      +.|.                                 |...+++++|.|..|++||.++..                   
T Consensus       228 vdWH---------------------------------P~kgLiasgskDnlVKlWDprSg~-------------------  255 (464)
T KOG0284|consen  228 VDWH---------------------------------PTKGLIASGSKDNLVKLWDPRSGS-------------------  255 (464)
T ss_pred             eccC---------------------------------CccceeEEccCCceeEeecCCCcc-------------------
Confidence            9995                                 334499999999999999987522                   


Q ss_pred             cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEE
Q 004581          366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE  445 (744)
Q Consensus       366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~  445 (744)
                                                                                                      
T Consensus       256 --------------------------------------------------------------------------------  255 (464)
T KOG0284|consen  256 --------------------------------------------------------------------------------  255 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581          446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK  525 (744)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  525 (744)
                              ++     ..+..|...|..+.|+|++++|++++.|..+++||+.+.+.+.++.+           |...|++
T Consensus       256 --------cl-----~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-----------Hkkdv~~  311 (464)
T KOG0284|consen  256 --------CL-----ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-----------HKKDVTS  311 (464)
T ss_pred             --------hh-----hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-----------chhhhee
Confidence                    11     23445556888999999999999999999999999998889999998           9999999


Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581          526 MFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       526 l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~  594 (744)
                      +.|+| ...+|.+|+.||.|..|.+...+++..++..|...|++|+|+| -|.+|++|+.|.++++|.-.
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeeccC
Confidence            99999 4568889999999999999988888888888999999999999 99999999999999999744

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-34  Score=288.29  Aligned_cols=306  Identities=19%  Similarity=0.235  Sum_probs=246.5

Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581          130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR  209 (744)
Q Consensus       130 ~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~  209 (744)
                      ...++|..|++|+.+||.|..|..|++|.+... .+..++         +...+.        .+=+.+.|-.+.+-|-.
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk---------~~~~l~--------~~d~~sad~~~~~~D~~  439 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLK---------DASDLS--------NIDTESADVDVDMLDDD  439 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchh-hhcccc---------chhhhc--------cccccccchhhhhcccc
Confidence            456899999999999999999999999998643 333333         111110        12233444457778888


Q ss_pred             CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581          210 HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA  289 (744)
Q Consensus       210 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  289 (744)
                      ++....++.+|.++|....|+|+.++|++++.|+++++|.+.+..                 ++....+|..+|..+.|+
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-----------------~~V~y~GH~~PVwdV~F~  502 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-----------------CLVIYKGHLAPVWDVQFA  502 (707)
T ss_pred             CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce-----------------eEEEecCCCcceeeEEec
Confidence            777888899999999999999999999999999999999998844                 577788999999999997


Q ss_pred             ccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccccccee
Q 004581          290 VPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI  369 (744)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  369 (744)
                               |-|-                        +++|++.|++-++|......                       
T Consensus       503 ---------P~Gy------------------------YFatas~D~tArLWs~d~~~-----------------------  526 (707)
T KOG0263|consen  503 ---------PRGY------------------------YFATASHDQTARLWSTDHNK-----------------------  526 (707)
T ss_pred             ---------CCce------------------------EEEecCCCceeeeeecccCC-----------------------
Confidence                     5454                        89999999999888765311                       


Q ss_pred             ecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecC
Q 004581          370 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG  449 (744)
Q Consensus       370 ~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~  449 (744)
                                                                                                      
T Consensus       527 --------------------------------------------------------------------------------  526 (707)
T KOG0263|consen  527 --------------------------------------------------------------------------------  526 (707)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEEC
Q 004581          450 KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTS  529 (744)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  529 (744)
                        ..       ..+.+|...+.|+.|+|++.|+++|+.|.+|++||+.+|..++.|.+           |.++|++++||
T Consensus       527 --Pl-------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----------H~~~V~al~~S  586 (707)
T KOG0263|consen  527 --PL-------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----------HKGPVTALAFS  586 (707)
T ss_pred             --ch-------hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----------CCCceEEEEEc
Confidence              00       33456777899999999999999999999999999999999999999           99999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccc----ccccc-
Q 004581          530 SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG----EWSMQ-  604 (744)
Q Consensus       530 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~----~ws~~-  604 (744)
                      |+|++||+|+.||.|.+||+.+++.+..+.+ |.+.|.+|.|+. ||..||+++.|++|++||+..-...    .-+.. 
T Consensus       587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~  664 (707)
T KOG0263|consen  587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKG-HTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVIELLNLGHISTSN  664 (707)
T ss_pred             CCCceEeecccCCcEEEEEcCCCcchhhhhc-ccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhccccccccccccc
Confidence            9999999999999999999999999888876 588999999999 9999999999999999998743221    00000 


Q ss_pred             --------ccCCcccccccCCCceEEEEeCCC
Q 004581          605 --------HTFVLPRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       605 --------~~~~~~~~~~~~~~~v~~i~fspd  628 (744)
                              ....+...+.....+|.+|.|...
T Consensus       665 ~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr  696 (707)
T KOG0263|consen  665 SAITQENNASSLLLGSFYTKNTPVVGLHFTRR  696 (707)
T ss_pred             ccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence                    011244556556678888888764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=260.53  Aligned_cols=490  Identities=16%  Similarity=0.171  Sum_probs=349.1

Q ss_pred             CCeeEEecCCCeEEEEEccCCc-eeEEeeccC-cceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLK-QKIVLQSID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN   82 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~h~-~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (744)
                      ...||.+=.||.|.+||+...= +...+.++. ..|.+++|++.+                                   
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-----------------------------------   81 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-----------------------------------   81 (691)
T ss_pred             CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-----------------------------------
Confidence            4568999999999999998743 444566654 789999999776                                   


Q ss_pred             CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581           83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG  162 (744)
Q Consensus        83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~  162 (744)
                                      +|.+.+-+|.|.-||+.+.+..   ..+..-.+.|.+++.+|.++.++.||.||.+...+...+
T Consensus        82 ----------------RLFS~g~sg~i~EwDl~~lk~~---~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~  142 (691)
T KOG2048|consen   82 ----------------RLFSSGLSGSITEWDLHTLKQK---YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD  142 (691)
T ss_pred             ----------------eEEeecCCceEEEEecccCcee---EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence                            8999999999999999987776   777788899999999999999999999998888888877


Q ss_pred             ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec--------cccceeEEEEcCCC
Q 004581          163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF--------HKGDVNALAAAPSH  233 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~l~~~~~~  233 (744)
                      ...+.....      ...+.|.++.|.|++ .++.|+.||.|++||..++..+.....        ...-|+++.|..++
T Consensus       143 ~I~~~r~l~------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~  216 (691)
T KOG2048|consen  143 KITYKRSLM------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS  216 (691)
T ss_pred             eEEEEeecc------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence            776655432      467999999999999 699999999999999999887762221        23357888888666


Q ss_pred             CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581          234 NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI  313 (744)
Q Consensus       234 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (744)
                       .|++|..-|+|.+||...+.+                 +.....|..+|.+++.+         +              
T Consensus       217 -tI~sgDS~G~V~FWd~~~gTL-----------------iqS~~~h~adVl~Lav~---------~--------------  255 (691)
T KOG2048|consen  217 -TIASGDSAGTVTFWDSIFGTL-----------------IQSHSCHDADVLALAVA---------D--------------  255 (691)
T ss_pred             -cEEEecCCceEEEEcccCcch-----------------hhhhhhhhcceeEEEEc---------C--------------
Confidence             699999999999999988774                 67788999999999985         3              


Q ss_pred             cccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581          314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN  393 (744)
Q Consensus       314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~  393 (744)
                                +.+.++++|.|+.|..|...+.....   ....+...|...+++++..++  .+.++.....+.-.....
T Consensus       256 ----------~~d~vfsaGvd~~ii~~~~~~~~~~w---v~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  256 ----------NEDRVFSAGVDPKIIQYSLTTNKSEW---VINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ----------CCCeEEEccCCCceEEEEecCCccce---eeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence                      33499999999999988887654421   112344455677788888777  555554444443332222


Q ss_pred             CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCC-----CCCceEEeeeccCCcccc
Q 004581          394 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGK-----VGQGEWIINKRQLPRKLQ  468 (744)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~-----~~~~~~~~~~~~~~~~~~  468 (744)
                      ...          ..........+ ..  -+...|..+++..=....+.+|.+...-     +...+..+.    .....
T Consensus       321 ~~~----------~~h~~~~~~p~-~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~----~k~~~  383 (691)
T KOG2048|consen  321 FKN----------MDHRQKNLFPA-SD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF----TKEKE  383 (691)
T ss_pred             cCc----------hhhhccccccc-cc--eeecCccceEEEEeccccccceeccCcccccccChhhheeee----cCCcc
Confidence            110          00000000000 11  1223344444444566677777775420     011111111    11223


Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEE
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIF  547 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iw  547 (744)
                      .+.+.+.||||++++.+.-. .++||.++....+.....      ...+...-..+.+.|+-|++.++.++ ....+.++
T Consensus       384 nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v------~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~  456 (691)
T KOG2048|consen  384 NISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV------DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEF  456 (691)
T ss_pred             ceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEe------ccchhhhccceeeEEEecCceEEEEecccceeEEE
Confidence            68899999999999988754 488888864222221111      00111345678899999999888887 67788899


Q ss_pred             ECCCcceEEEE---ecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccc-cCCCceEEE
Q 004581          548 NLEIQRQHWFI---SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQ-EFPGEVIGL  623 (744)
Q Consensus       548 d~~~~~~~~~~---~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~-~~~~~v~~i  623 (744)
                      +++++......   +......|..|..+| +|++||+++.+|.|.+|++++++...            +. ..+..++..
T Consensus       457 el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~------------l~~rln~~vTa~  523 (691)
T KOG2048|consen  457 ELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHL------------LKVRLNIDVTAA  523 (691)
T ss_pred             EecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeec------------chhccCcceeee
Confidence            88876543222   222236899999999 99999999999999999999998633            22 234789999


Q ss_pred             EeCCCCCCcEEEEEcCceEEEEeC
Q 004581          624 SFSPSPSSSSVIIYSARAMCVIDF  647 (744)
Q Consensus       624 ~fspdg~~~~~~~~~~~~~~~~~~  647 (744)
                      +|+|.-.+..++.++++.++-+|+
T Consensus       524 ~~~~~~~~~lvvats~nQv~efdi  547 (691)
T KOG2048|consen  524 AFSPFVRNRLVVATSNNQVFEFDI  547 (691)
T ss_pred             eccccccCcEEEEecCCeEEEEec
Confidence            999875677778888899999997

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.9e-34  Score=286.62  Aligned_cols=281  Identities=15%  Similarity=0.129  Sum_probs=237.6

Q ss_pred             eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecC
Q 004581           27 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD  106 (744)
Q Consensus        27 ~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d  106 (744)
                      +.+++..-...+.|..|++|+                                                  ..||.|..|
T Consensus       370 c~YT~~nt~~~v~ca~fSdds--------------------------------------------------smlA~Gf~d  399 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDS--------------------------------------------------SMLACGFVD  399 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCc--------------------------------------------------chhhccccc
Confidence            445555556789999999999                                                  589999999


Q ss_pred             CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEE
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL  186 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (744)
                      ..|++|.+. ...+   +.+++.. .         ...+=+.+.|-.+.+-|-.++....++.        +|.++|+..
T Consensus       400 S~i~~~Sl~-p~kl---~~lk~~~-~---------l~~~d~~sad~~~~~~D~~~~~~~~~L~--------GH~GPVyg~  457 (707)
T KOG0263|consen  400 SSVRVWSLT-PKKL---KKLKDAS-D---------LSNIDTESADVDVDMLDDDSSGTSRTLY--------GHSGPVYGC  457 (707)
T ss_pred             cEEEEEecc-hhhh---ccccchh-h---------hccccccccchhhhhccccCCceeEEee--------cCCCceeee
Confidence            999999997 3344   3443221 1         1223345556567788877777777777        899999999


Q ss_pred             EEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581          187 LSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE  265 (744)
Q Consensus       187 ~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  265 (744)
                      .|+|+. +|+++++|+++|+|.+.+..++-.+++|..+|..+.|+|.|-++++++.|++-++|......           
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-----------  526 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-----------  526 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-----------
Confidence            999999 89999999999999999999999999999999999999999999999999999999988865           


Q ss_pred             ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581          266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF  345 (744)
Q Consensus       266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~  345 (744)
                            +.+.+.+|-.+|.|+.|.                                 |+..++++||.|.++++||..+.
T Consensus       527 ------PlRifaghlsDV~cv~FH---------------------------------PNs~Y~aTGSsD~tVRlWDv~~G  567 (707)
T KOG0263|consen  527 ------PLRIFAGHLSDVDCVSFH---------------------------------PNSNYVATGSSDRTVRLWDVSTG  567 (707)
T ss_pred             ------chhhhcccccccceEEEC---------------------------------CcccccccCCCCceEEEEEcCCC
Confidence                  377889999999999994                                 45559999999999999998652


Q ss_pred             CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581          346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST  425 (744)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  425 (744)
                      .                                                                               
T Consensus       568 ~-------------------------------------------------------------------------------  568 (707)
T KOG0263|consen  568 N-------------------------------------------------------------------------------  568 (707)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581          426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF  505 (744)
Q Consensus       426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~  505 (744)
                                    .||+                   +.+|..+|.+++|||+|++|++|+.||.|.+||+.+++++.++
T Consensus       569 --------------~VRi-------------------F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l  615 (707)
T KOG0263|consen  569 --------------SVRI-------------------FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL  615 (707)
T ss_pred             --------------EEEE-------------------ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence                          0111                   2356668999999999999999999999999999999999999


Q ss_pred             ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc
Q 004581          506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ  552 (744)
Q Consensus       506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~  552 (744)
                      .+           |.+.|.++.||.||..||+++.|..|++||+...
T Consensus       616 ~~-----------Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  616 KG-----------HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             hc-----------ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99           9999999999999999999999999999999643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.2e-31  Score=250.00  Aligned_cols=423  Identities=15%  Similarity=0.219  Sum_probs=301.7

Q ss_pred             CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581           15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV   94 (744)
Q Consensus        15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (744)
                      +.+.++|.+. +..+.+.+|+..|.||+++||.-.++++...+..                                   
T Consensus        85 ~V~Vl~n~ee-~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~-----------------------------------  128 (626)
T KOG2106|consen   85 AVGVLYNWEE-RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTS-----------------------------------  128 (626)
T ss_pred             cEEEEEeehh-hhcccccCCCCceEEEeecCCceeeccCcccccC-----------------------------------
Confidence            3566777655 3344567899999999999998433332110000                                   


Q ss_pred             ccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec--CCCEEEEEe--CCCeEEEEEccCCceEEEEEe
Q 004581           95 VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGS--SDGYIRSWDAKLGYEIYRITV  170 (744)
Q Consensus        95 ~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~--~dg~i~vwd~~~~~~~~~~~~  170 (744)
                        ++     -.--.++|||..+-..+   +.+..-...|.|++||+  .|.+|....  .+..+.|||...+......+ 
T Consensus       129 --g~-----~~~phvriWdsv~L~TL---~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-  197 (626)
T KOG2106|consen  129 --GR-----PLQPHVRIWDSVTLSTL---HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-  197 (626)
T ss_pred             --CC-----cCCCeeeecccccceee---eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-
Confidence              00     00136999997644444   66666677899999997  345555543  35678999998887776666 


Q ss_pred             cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe---ecc-ccceeEEEEcCCCCEEEeecCCCeE
Q 004581          171 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH---SFH-KGDVNALAAAPSHNRVFSTGSDGQV  245 (744)
Q Consensus       171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~---~~h-~~~v~~l~~~~~~~~l~~~~~dg~i  245 (744)
                             .....|....|+|.+ .++.....+.+.+|+.+.+.+.++.   ..+ ..-|.|++|.++|. +++|.++|.|
T Consensus       198 -------~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i  269 (626)
T KOG2106|consen  198 -------TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNI  269 (626)
T ss_pred             -------eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceE
Confidence                   466778899999988 6766777899999999987665442   222 36799999999996 8999999999


Q ss_pred             EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581          246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV  325 (744)
Q Consensus       246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  325 (744)
                      .+|+..+...                 .+....|...|.+++..         .+|                        
T Consensus       270 ~Iw~~~~~~~-----------------~k~~~aH~ggv~~L~~l---------r~G------------------------  299 (626)
T KOG2106|consen  270 LIWSKGTNRI-----------------SKQVHAHDGGVFSLCML---------RDG------------------------  299 (626)
T ss_pred             EEEeCCCceE-----------------EeEeeecCCceEEEEEe---------cCc------------------------
Confidence            9999977552                 34445899999999986         444                        


Q ss_pred             cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCC
Q 004581          326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA  405 (744)
Q Consensus       326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~  405 (744)
                       .|++|+.|..|..|| ...+......   .|.  ....++.++-...+.++-+..+.+--=.+..              
T Consensus       300 -tllSGgKDRki~~Wd-~~y~k~r~~e---lPe--~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~--------------  358 (626)
T KOG2106|consen  300 -TLLSGGKDRKIILWD-DNYRKLRETE---LPE--QFGPIRTVAEGKGDILVGTTRNFILQGTLEN--------------  358 (626)
T ss_pred             -cEeecCccceEEecc-cccccccccc---Cch--hcCCeeEEecCCCcEEEeeccceEEEeeecC--------------
Confidence             577899999999999 3333322222   222  1244555544444434444444332222211              


Q ss_pred             CcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEE
Q 004581          406 STSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII  484 (744)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~  484 (744)
                         -.......|......++..|+...+++ +.++.+++|+ .    ....|.....      .++.++.|+|.| .+|.
T Consensus       359 ---~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~----~k~~wt~~~~------d~~~~~~fhpsg-~va~  423 (626)
T KOG2106|consen  359 ---GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D----HKLEWTKIIE------DPAECADFHPSG-VVAV  423 (626)
T ss_pred             ---CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C----CceeEEEEec------CceeEeeccCcc-eEEE
Confidence               112233455678889999998876666 7999999998 1    3345654432      278899999999 9999


Q ss_pred             EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce-EEEEecCCC
Q 004581          485 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ-HWFISRLEG  563 (744)
Q Consensus       485 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~  563 (744)
                      |...|...+.|.++..++..-.            ...+++.++|+|+|.+||.|+.|+.|+||.++.... .......+.
T Consensus       424 Gt~~G~w~V~d~e~~~lv~~~~------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  424 GTATGRWFVLDTETQDLVTIHT------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             eeccceEEEEecccceeEEEEe------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence            9999999999998855554444            378899999999999999999999999999975543 334444456


Q ss_pred             CceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581          564 ASVTAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       564 ~~v~~l~~sp~~~~~l~~~~~d~~v~vw  591 (744)
                      ++|+++.||+ |+++|.+.+.|-.|..|
T Consensus       492 s~ithLDwS~-Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  492 SPITHLDWSS-DSQFLVSNSGDYEILYW  518 (626)
T ss_pred             ceeEEeeecC-CCceEEeccCceEEEEE
Confidence            8999999999 99999999999999999

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-33  Score=236.79  Aligned_cols=284  Identities=19%  Similarity=0.199  Sum_probs=239.7

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS  202 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~  202 (744)
                      +.+.+|+++|..+.|+-||++.++++.|.+|++|+...|.+++++.        +|...|..++.+.|+ .+++|+.|..
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs--------ghG~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS--------GHGHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec--------CCCceeeeccccccccccccCCCCce
Confidence            6788999999999999999999999999999999999999999998        799999999999998 9999999999


Q ss_pred             EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581          203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD  282 (744)
Q Consensus       203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  282 (744)
                      +.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.++...               .+++.+......
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---------------ePiQildea~D~  147 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---------------EPIQILDEAKDG  147 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC---------------CccchhhhhcCc
Confidence            99999999999999999999999999999999999999999999999988653               235566666777


Q ss_pred             ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581          283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI  362 (744)
Q Consensus       283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  362 (744)
                      |.++.++                                   ...++.|+.||+++.||++..+..              
T Consensus       148 V~Si~v~-----------------------------------~heIvaGS~DGtvRtydiR~G~l~--------------  178 (307)
T KOG0316|consen  148 VSSIDVA-----------------------------------EHEIVAGSVDGTVRTYDIRKGTLS--------------  178 (307)
T ss_pred             eeEEEec-----------------------------------ccEEEeeccCCcEEEEEeecceee--------------
Confidence            7777763                                   126888888998888888642200              


Q ss_pred             ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceE
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS  442 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~  442 (744)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (307)
T KOG0316|consen  179 --------------------------------------------------------------------------------  178 (307)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 004581          443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP  522 (744)
Q Consensus       443 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (744)
                                        ....+  .+|+++.||+|++.+++++-|+++++.|-++|+++..+++           |...
T Consensus       179 ------------------sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG-----------hkn~  227 (307)
T KOG0316|consen  179 ------------------SDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG-----------HKNM  227 (307)
T ss_pred             ------------------hhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc-----------cccc
Confidence                              00111  2899999999999999999999999999999999999999           5443


Q ss_pred             --eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581          523 --ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       523 --i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                        -...+++.....+++|+.||.|++||+........++....-.|++++++| .-..|+++..- .+..|-
T Consensus       228 eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp-~~~~f~~A~~~-~~~~~~  297 (307)
T KOG0316|consen  228 EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP-TMDDFITATGH-GDLFWY  297 (307)
T ss_pred             eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc-CccceeEecCC-ceecee
Confidence              345677788889999999999999999999888777654433389999999 66667777644 455554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4e-33  Score=244.98  Aligned_cols=290  Identities=20%  Similarity=0.277  Sum_probs=232.1

Q ss_pred             EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581          122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS  199 (744)
Q Consensus       122 ~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  199 (744)
                      +...+.+|++.|..+.|+|+|..||||+.|..|.+|++.. .+-...++        +|.+.|..+.|.+|+ .+++++.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecC
Confidence            4467789999999999999999999999999999999632 33344444        799999999999999 9999999


Q ss_pred             CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581          200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA  278 (744)
Q Consensus       200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (744)
                      |.+|+.||+++|+.++.+++|..-|.++.-+.-|. ++.+++.|+++++||++....                 + ....
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----------------~-~t~~  172 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----------------I-KTFE  172 (338)
T ss_pred             CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----------------h-hccc
Confidence            99999999999999999999999999998665564 555788899999999997652                 1 1222


Q ss_pred             ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581          279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ  358 (744)
Q Consensus       279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~  358 (744)
                      ....++++.|.         .+                        .+.+.+|+-|+.|++||++...            
T Consensus       173 ~kyqltAv~f~---------d~------------------------s~qv~sggIdn~ikvWd~r~~d------------  207 (338)
T KOG0265|consen  173 NKYQLTAVGFK---------DT------------------------SDQVISGGIDNDIKVWDLRKND------------  207 (338)
T ss_pred             cceeEEEEEec---------cc------------------------ccceeeccccCceeeeccccCc------------
Confidence            34456777774         22                        2378888888888888875311            


Q ss_pred             CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcC
Q 004581          359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH  438 (744)
Q Consensus       359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~  438 (744)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (338)
T KOG0265|consen  208 --------------------------------------------------------------------------------  207 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC----CceeeeeccCcccccc
Q 004581          439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS----SELLHTFTPCREEHDR  514 (744)
Q Consensus       439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~~~~  514 (744)
                                     .+     ..+.+|...|+.+..+|+|.++.+-+.|.++++||+..    ..++..+.++...   
T Consensus       208 ---------------~~-----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---  264 (338)
T KOG0265|consen  208 ---------------GL-----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---  264 (338)
T ss_pred             ---------------ce-----EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh---
Confidence                           00     22445666888888899999999999999999999853    2347777763221   


Q ss_pred             cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581          515 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       515 ~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw  591 (744)
                          .......++|||+++.+.+|+.|..+++||......+..+++ |.+.|.+++|+| ...+|.+++.|.+|++=
T Consensus       265 ----feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-h~gsvn~~~Fhp-~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  265 ----FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-HYGSVNEVDFHP-TEPIILSCSSDKTIYLG  335 (338)
T ss_pred             ----hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-cceeEEEeeecC-CCcEEEEeccCceeEee
Confidence                234456788999999999999999999999999999888987 567999999999 99999999999999863

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.8e-34  Score=255.80  Aligned_cols=262  Identities=18%  Similarity=0.283  Sum_probs=222.9

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ..+++|..|++|+|||..+-..+   +.+.||++.|.|+.|  |.+.+++|+.|.+|+|||+++|+++..+.        
T Consensus       208 ~kiVSGlrDnTikiWD~n~~~c~---~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli--------  274 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSLECL---KILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI--------  274 (499)
T ss_pred             hhhhcccccCceEEeccccHHHH---HhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh--------
Confidence            37999999999999999866665   899999999999999  56799999999999999999999999987        


Q ss_pred             CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcc---eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGT---LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      +|...|..+.|+ +|++++++.|.+|.+||+....   +...+.+|.+.|+.+.|+  .+++++++.|.+|++|++.+..
T Consensus       275 hHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e  351 (499)
T KOG0281|consen  275 HHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE  351 (499)
T ss_pred             hhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee
Confidence            799999999998 5799999999999999998654   345678999999999996  4599999999999999999987


Q ss_pred             CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581          255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD  334 (744)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d  334 (744)
                      +                 ++.+.+|...|-|+.+                                   .+.++++|+.|
T Consensus       352 f-----------------vRtl~gHkRGIAClQY-----------------------------------r~rlvVSGSSD  379 (499)
T KOG0281|consen  352 F-----------------VRTLNGHKRGIACLQY-----------------------------------RDRLVVSGSSD  379 (499)
T ss_pred             e-----------------ehhhhcccccceehhc-----------------------------------cCeEEEecCCC
Confidence            4                 8889999999988876                                   23389999999


Q ss_pred             CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581          335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK  414 (744)
Q Consensus       335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (744)
                      .+|++||+....                                                                    
T Consensus       380 ntIRlwdi~~G~--------------------------------------------------------------------  391 (499)
T KOG0281|consen  380 NTIRLWDIECGA--------------------------------------------------------------------  391 (499)
T ss_pred             ceEEEEeccccH--------------------------------------------------------------------
Confidence            999999886421                                                                    


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581          415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV  494 (744)
Q Consensus       415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~  494 (744)
                                                             .+     ..+.+|..-|.++.|  |.+.+++|+.||+|+||
T Consensus       392 ---------------------------------------cL-----RvLeGHEeLvRciRF--d~krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  392 ---------------------------------------CL-----RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW  425 (499)
T ss_pred             ---------------------------------------HH-----HHHhchHHhhhheee--cCceeeeccccceEEEE
Confidence                                                   11     345566667888998  78999999999999999


Q ss_pred             EccCCc---------eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581          495 DVSSSE---------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ  554 (744)
Q Consensus       495 d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~  554 (744)
                      |+..+.         ++.++..           |.+.|..+.|  |...+++++.|.+|.|||+.++..
T Consensus       426 dl~aaldpra~~~~~Cl~~lv~-----------hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  426 DLQAALDPRAPASTLCLRTLVE-----------HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ecccccCCcccccchHHHhhhh-----------ccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            997653         2333333           8999999999  666899999999999999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1e-34  Score=259.47  Aligned_cols=273  Identities=17%  Similarity=0.214  Sum_probs=229.2

Q ss_pred             CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      +++.+++|..|++|.|||.++..+++.+.||.+.|-|+.|..                                      
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--------------------------------------  247 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--------------------------------------  247 (499)
T ss_pred             cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--------------------------------------
Confidence            577899999999999999999999999999999999999876                                      


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                                    +.+++|+.|.+|+|||+++++.+   .++-+|...|..+.|+  ..+++|++.|.+|.|||+.+..
T Consensus       248 --------------rviisGSSDsTvrvWDv~tge~l---~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps  308 (499)
T KOG0281|consen  248 --------------RVIVSGSSDSTVRVWDVNTGEPL---NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT  308 (499)
T ss_pred             --------------eEEEecCCCceEEEEeccCCchh---hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch
Confidence                          47999999999999999999998   8999999999999997  4589999999999999997654


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG  243 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg  243 (744)
                      .+....     ...+|...|..+.|... ++++++.|.+|++|++.+++.+.++.+|...|.|+.+.  ++++++|+.|.
T Consensus       309 ~it~rr-----VLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDn  380 (499)
T KOG0281|consen  309 DITLRR-----VLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN  380 (499)
T ss_pred             HHHHHH-----HHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCc
Confidence            322111     12279999999999744 99999999999999999999999999999999999985  88999999999


Q ss_pred             eEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccC
Q 004581          244 QVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHL  323 (744)
Q Consensus       244 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  323 (744)
                      +|++||+..+.                 +++.+.+|..-|+++.|.                                  
T Consensus       381 tIRlwdi~~G~-----------------cLRvLeGHEeLvRciRFd----------------------------------  409 (499)
T KOG0281|consen  381 TIRLWDIECGA-----------------CLRVLEGHEELVRCIRFD----------------------------------  409 (499)
T ss_pred             eEEEEeccccH-----------------HHHHHhchHHhhhheeec----------------------------------
Confidence            99999999987                 478899999999999982                                  


Q ss_pred             CCcEEEEecCCCeEEEEecCccCCCC--CcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581          324 GVPMLISAGDDTKLFAYCANEFTKFS--PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN  393 (744)
Q Consensus       324 ~~~~l~s~~~d~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~  393 (744)
                       ...+++|+.||+|++||+.......  ....+......+.+.+..+.|..-..+-.+.+.++-+|++....
T Consensus       410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence             2389999999999999998654332  12223333344556777777765544445567799999987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.4e-31  Score=264.43  Aligned_cols=286  Identities=23%  Similarity=0.338  Sum_probs=239.0

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS  202 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~  202 (744)
                      +.+.+|.++|.+++|+|++++|++++.||.|++|++.+++....+.        .|...+..+.|++++ .+++++.+|.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~   74 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------GHTGPVRDVAASADGTYLASGSSDKT   74 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------cCCcceeEEEECCCCCEEEEEcCCCe
Confidence            5677999999999999999999999999999999999888777776        678888999999999 8999999999


Q ss_pred             EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581          203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD  282 (744)
Q Consensus       203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  282 (744)
                      |++||+.+++.+..+..|...|.++.|+++++++++++.|+.+.+|++....                 ....+..|...
T Consensus        75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~  137 (289)
T cd00200          75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----------------CLTTLRGHTDW  137 (289)
T ss_pred             EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----------------EEEEeccCCCc
Confidence            9999999888899999999999999999998888888889999999998544                 23444566667


Q ss_pred             ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581          283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI  362 (744)
Q Consensus       283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  362 (744)
                      +.+++++         |++.                        ++++++.|+.|++||+....                
T Consensus       138 i~~~~~~---------~~~~------------------------~l~~~~~~~~i~i~d~~~~~----------------  168 (289)
T cd00200         138 VNSVAFS---------PDGT------------------------FVASSSQDGTIKLWDLRTGK----------------  168 (289)
T ss_pred             EEEEEEc---------CcCC------------------------EEEEEcCCCcEEEEEccccc----------------
Confidence            7777775         3332                        56666667777777664211                


Q ss_pred             ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceE
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS  442 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~  442 (744)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (289)
T cd00200         169 --------------------------------------------------------------------------------  168 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 004581          443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP  522 (744)
Q Consensus       443 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (744)
                               ..       ..+..+...+.++.|+|+++.+++++.++.|++||+.+++.+..+..           |...
T Consensus       169 ---------~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----------~~~~  221 (289)
T cd00200         169 ---------CV-------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-----------HENG  221 (289)
T ss_pred             ---------cc-------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----------cCCc
Confidence                     00       00112223678899999999999999999999999998888888866           7889


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581          523 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       523 i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                      +.+++|+|++.++++++.+|.|++|++.+++....+. .|...|.+++|+| ++++|++++.|+.|++|+
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSP-DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence            9999999999999999889999999999888877776 4567899999999 899999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.1e-31  Score=264.91  Aligned_cols=286  Identities=26%  Similarity=0.355  Sum_probs=238.7

Q ss_pred             EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581           29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC  108 (744)
Q Consensus        29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~  108 (744)
                      .++++|..+|.+++|+|++                                                  ++|++++.||.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~--------------------------------------------------~~l~~~~~~g~   32 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDG--------------------------------------------------KLLATGSGDGT   32 (289)
T ss_pred             hHhcccCCCEEEEEEcCCC--------------------------------------------------CEEEEeecCcE
Confidence            4677899999999999998                                                  58999999999


Q ss_pred             EEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEE
Q 004581          109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS  188 (744)
Q Consensus       109 i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  188 (744)
                      |++|++.+++..   ..+..|...+.++.|+|++++|++++.||.|++||+.+++.+..+.        .+...+.++.|
T Consensus        33 i~i~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--------~~~~~i~~~~~  101 (289)
T cd00200          33 IKVWDLETGELL---RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT--------GHTSYVSSVAF  101 (289)
T ss_pred             EEEEEeeCCCcE---EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe--------ccCCcEEEEEE
Confidence            999999866544   6777899999999999999999999999999999999888888777        57789999999


Q ss_pred             ecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccccc
Q 004581          189 LRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVI  267 (744)
Q Consensus       189 ~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  267 (744)
                      ++++ .+++++.++.|.+||+.+++.+..+..|...|.+++|+|++.++++++.|+.|++||+.....            
T Consensus       102 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------------  169 (289)
T cd00200         102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC------------  169 (289)
T ss_pred             cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc------------
Confidence            9998 666666799999999999999999999999999999999998888888899999999976542            


Q ss_pred             ceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581          268 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK  347 (744)
Q Consensus       268 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~  347 (744)
                           ...+..|...+.++.++         ++++                        .+++++.|+.+++||+.... 
T Consensus       170 -----~~~~~~~~~~i~~~~~~---------~~~~------------------------~l~~~~~~~~i~i~d~~~~~-  210 (289)
T cd00200         170 -----VATLTGHTGEVNSVAFS---------PDGE------------------------KLLSSSSDGTIKLWDLSTGK-  210 (289)
T ss_pred             -----ceeEecCccccceEEEC---------CCcC------------------------EEEEecCCCcEEEEECCCCc-
Confidence                 34455666677777775         4433                        66666667777777765311 


Q ss_pred             CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 004581          348 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS  427 (744)
Q Consensus       348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  427 (744)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (289)
T cd00200         211 --------------------------------------------------------------------------------  210 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581          428 NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       428 ~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  507 (744)
                                                .+     ..+..+...+.+++|+|++.++++++.+|.|++||+.+++.+..+..
T Consensus       211 --------------------------~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~  259 (289)
T cd00200         211 --------------------------CL-----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG  259 (289)
T ss_pred             --------------------------ee-----cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence                                      00     11112233678899999988888888899999999998888888887


Q ss_pred             CcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          508 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       508 ~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                                 |...|.+++|+|++++|++++.||.|++|+
T Consensus       260 -----------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         260 -----------HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -----------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence                       888999999999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.2e-32  Score=279.05  Aligned_cols=273  Identities=23%  Similarity=0.350  Sum_probs=220.0

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc-cCCceEEEEEecCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA-KLGYEIYRITVGLGGLG  176 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~  176 (744)
                      +.+++++.|+.+++|+...... ...+.+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++.+.       
T Consensus       172 ~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-------  243 (456)
T KOG0266|consen  172 RALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-------  243 (456)
T ss_pred             CeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-------
Confidence            6899999999999999975551 222777899999999999999999999999999999999 5568888888       


Q ss_pred             CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581          177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI  255 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~  255 (744)
                       +|...|++++|+|++ ++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+.|++||+.++..
T Consensus       244 -gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  244 -GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             -CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence             799999999999999 999999999999999999999999999999999999999999999999999999999998761


Q ss_pred             CCCCCCCcccccceEEEEeeeeeccCc--ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581          256 GPNDGLSSSEVIKKWIYVGSVRAHTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD  333 (744)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~  333 (744)
                      .               +...+..+...  ++++.|+         |+++                        ++++++.
T Consensus       323 ~---------------~~~~~~~~~~~~~~~~~~fs---------p~~~------------------------~ll~~~~  354 (456)
T KOG0266|consen  323 L---------------CLKLLSGAENSAPVTSVQFS---------PNGK------------------------YLLSASL  354 (456)
T ss_pred             e---------------eeecccCCCCCCceeEEEEC---------CCCc------------------------EEEEecC
Confidence            0               12233333333  5555554         3333                        5566665


Q ss_pred             CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581          334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV  413 (744)
Q Consensus       334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (744)
                      |+.+++|++.....                                                                  
T Consensus       355 d~~~~~w~l~~~~~------------------------------------------------------------------  368 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKS------------------------------------------------------------------  368 (456)
T ss_pred             CCeEEEEEccCCcc------------------------------------------------------------------
Confidence            66666665543210                                                                  


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCccc---ccccEEEEeeCCCEEEEEeCCCc
Q 004581          414 KSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL---QFAHSMIFSYDSSQLIIAGHDRR  490 (744)
Q Consensus       414 ~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~spd~~~l~~~~~dg~  490 (744)
                                                             ..       ....|.   ..+.+..++++++++++|+.|+.
T Consensus       369 ---------------------------------------~~-------~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~  402 (456)
T KOG0266|consen  369 ---------------------------------------VG-------TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS  402 (456)
T ss_pred             ---------------------------------------ee-------eecccCCcceeEecccccCCCCeEEEEeCCce
Confidence                                                   00       000111   12333445789999999999999


Q ss_pred             EEEEEccCCceeeeeccCcccccccCCCC-CCceEEEEECCCCCEEEEEe--CCCcEEEEECC
Q 004581          491 IYVVDVSSSELLHTFTPCREEHDREIQPS-EPPITKMFTSSDGQWLAAVN--CFGDVYIFNLE  550 (744)
Q Consensus       491 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~las~~--~dg~i~iwd~~  550 (744)
                      |++||+.++..+..+.+           | ...+..+.++|..+++++++  .|+.+++|..+
T Consensus       403 v~~~~~~s~~~~~~l~~-----------h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  403 VYVWDSSSGGILQRLEG-----------HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEEeCCccchhhhhcC-----------CCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999998           8 88999999999999999998  68899999754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=263.04  Aligned_cols=290  Identities=15%  Similarity=0.235  Sum_probs=244.1

Q ss_pred             eecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581          123 HRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS  199 (744)
Q Consensus       123 ~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  199 (744)
                      .+.+.+|...|+++.|.| .+.+|++++.|+.|+||++-. +++++++.        +|..+|.+++|+++| .+++++.
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~--------gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK--------GHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh--------cchhhhhhhhccccCCeeeeeec
Confidence            378899999999999999 899999999999999999977 88999998        899999999999999 8999999


Q ss_pred             CCCEEEEeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581          200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA  278 (744)
Q Consensus       200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (744)
                      |+.|++||.++|+++..+.. ...+.|+.|.|++ +.+++|+.|+.|+.||++++..                 ++....
T Consensus       279 D~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-----------------vqeYd~  340 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-----------------VQEYDR  340 (503)
T ss_pred             ceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-----------------HHHHHh
Confidence            99999999999999999875 5678999999998 8889999999999999999874                 566677


Q ss_pred             ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581          279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ  358 (744)
Q Consensus       279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~  358 (744)
                      |-..|..+.|-         ++++                        .+++.+.|+++++|+......           
T Consensus       341 hLg~i~~i~F~---------~~g~------------------------rFissSDdks~riWe~~~~v~-----------  376 (503)
T KOG0282|consen  341 HLGAILDITFV---------DEGR------------------------RFISSSDDKSVRIWENRIPVP-----------  376 (503)
T ss_pred             hhhheeeeEEc---------cCCc------------------------eEeeeccCccEEEEEcCCCcc-----------
Confidence            88888888885         4454                        888999899888887653110           


Q ss_pred             CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcC
Q 004581          359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH  438 (744)
Q Consensus       359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~  438 (744)
                                                                                    +                 
T Consensus       377 --------------------------------------------------------------i-----------------  377 (503)
T KOG0282|consen  377 --------------------------------------------------------------I-----------------  377 (503)
T ss_pred             --------------------------------------------------------------c-----------------
Confidence                                                                          0                 


Q ss_pred             CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCC---ceeeeeccCccccccc
Q 004581          439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS---ELLHTFTPCREEHDRE  515 (744)
Q Consensus       439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~~~~  515 (744)
                                     +      ...........++..+|+++++++-+.|+.|.+|.+...   ...+.|+++..     
T Consensus       378 ---------------k------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-----  431 (503)
T KOG0282|consen  378 ---------------K------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-----  431 (503)
T ss_pred             ---------------h------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-----
Confidence                           0      000111114567888999999999999999999997532   34456666321     


Q ss_pred             CCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581          516 IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       516 ~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                          .+--..+.|||||++|++|+.||.+.+||.++.+....++. |..++..+.|+|.....+|+++.||.|++|+
T Consensus       432 ----aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  432 ----AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ----cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CCcceEEEEecCCCcceeEecccCceeEecC
Confidence                45567889999999999999999999999999998888866 5679999999998888999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=276.66  Aligned_cols=293  Identities=21%  Similarity=0.297  Sum_probs=247.7

Q ss_pred             ecccCc-cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581          124 RSLPRV-SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS  199 (744)
Q Consensus       124 ~~~~~h-~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  199 (744)
                      ..+.+| ...|.++.|+++|+.|++++.|+.+++|+..+++  ..+.+.        +|...|..++|+|++ .+++++.
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~--------~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS--------GHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc--------ccccceeeeEECCCCcEEEEecC
Confidence            444444 7889999999999999999999999999997777  444443        799999999999999 9999999


Q ss_pred             CCCEEEEeC-CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581          200 TGSVQFWDS-RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA  278 (744)
Q Consensus       200 dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (744)
                      |++|++||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||++++.                 +...+.+
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-----------------~~~~l~~  286 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-----------------CVRKLKG  286 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-----------------EEEeeec
Confidence            999999999 5568999999999999999999999999999999999999999866                 4889999


Q ss_pred             ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581          279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ  358 (744)
Q Consensus       279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~  358 (744)
                      |...|.+++|+         +++.                        .|++++.|+.|++||+.+....          
T Consensus       287 hs~~is~~~f~---------~d~~------------------------~l~s~s~d~~i~vwd~~~~~~~----------  323 (456)
T KOG0266|consen  287 HSDGISGLAFS---------PDGN------------------------LLVSASYDGTIRVWDLETGSKL----------  323 (456)
T ss_pred             cCCceEEEEEC---------CCCC------------------------EEEEcCCCccEEEEECCCCcee----------
Confidence            99999999997         5554                        9999999999999999763200          


Q ss_pred             CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcC
Q 004581          359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDH  438 (744)
Q Consensus       359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~  438 (744)
                                                                                      ++.             
T Consensus       324 ----------------------------------------------------------------~~~-------------  326 (456)
T KOG0266|consen  324 ----------------------------------------------------------------CLK-------------  326 (456)
T ss_pred             ----------------------------------------------------------------eee-------------
Confidence                                                                            000             


Q ss_pred             CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCC
Q 004581          439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP  518 (744)
Q Consensus       439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  518 (744)
                                   .     +  ....... .++++.|+|++++|+++..|+.+++||+..+..+.++.+           
T Consensus       327 -------------~-----~--~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~-----------  374 (456)
T KOG0266|consen  327 -------------L-----L--SGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG-----------  374 (456)
T ss_pred             -------------c-----c--cCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc-----------
Confidence                         0     0  0001111 578999999999999999999999999999999999998           


Q ss_pred             CCC---ceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEe--cCCeEEEEEc
Q 004581          519 SEP---PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT--SSNQVYVFDV  593 (744)
Q Consensus       519 ~~~---~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~--~d~~v~vwd~  593 (744)
                      |..   .+.+...+++++++++++.|+.|++||+.++.....+..+....+..++++| ..+++++++  .|+.+++|..
T Consensus       375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence            444   4555667889999999999999999999998877777653157899999999 999999998  6889999976


Q ss_pred             C
Q 004581          594 E  594 (744)
Q Consensus       594 ~  594 (744)
                      +
T Consensus       454 ~  454 (456)
T KOG0266|consen  454 D  454 (456)
T ss_pred             C
Confidence            4

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.6e-31  Score=294.65  Aligned_cols=320  Identities=13%  Similarity=0.179  Sum_probs=244.6

Q ss_pred             CCeEEEEEccCCceeEEe-----eccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccc
Q 004581           14 DGSVSEWDLYDLKQKIVL-----QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE   88 (744)
Q Consensus        14 d~~i~iwd~~~~~~~~~~-----~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (744)
                      +|.+++|+..+.+....+     ..|.+.|.+++|+|+|                                         
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg-----------------------------------------  495 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDG-----------------------------------------  495 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCC-----------------------------------------
Confidence            677888988876655443     3589999999999999                                         


Q ss_pred             ccccccccCCeEEEEecCCeEEEEEecCC----Ccee-EeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCC
Q 004581           89 LHEQSVVEDRRVALACDDGCVRIYRITDS----DELI-YHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLG  162 (744)
Q Consensus        89 ~~~~~~~~~~~la~~~~dg~i~iwd~~~~----~~~~-~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~  162 (744)
                               ++||+|+.|+.|+||+....    .... ....+. +...|.+++|++ ++.+|++++.||+|++||+.++
T Consensus       496 ---------~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~  565 (793)
T PLN00181        496 ---------EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS  565 (793)
T ss_pred             ---------CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence                     68999999999999997531    1110 112232 346899999987 4789999999999999999999


Q ss_pred             ceEEEEEecCCCCCCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEc-CCCCEEEee
Q 004581          163 YEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA-PSHNRVFST  239 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~~~  239 (744)
                      +.+..+.        +|...|++++|+| ++ .|++|+.|++|++||++++..+..+..+ ..|.++.|+ +++.+|++|
T Consensus       566 ~~~~~~~--------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        566 QLVTEMK--------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             eEEEEec--------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence            8888886        7999999999997 55 8999999999999999999999888764 689999995 578999999


Q ss_pred             cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581          240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK  319 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (744)
                      +.||.|++||+.....                ....+.+|...|.++.|.          ++                  
T Consensus       637 s~dg~I~iwD~~~~~~----------------~~~~~~~h~~~V~~v~f~----------~~------------------  672 (793)
T PLN00181        637 SADHKVYYYDLRNPKL----------------PLCTMIGHSKTVSYVRFV----------DS------------------  672 (793)
T ss_pred             eCCCeEEEEECCCCCc----------------cceEecCCCCCEEEEEEe----------CC------------------
Confidence            9999999999976431                134567899999999984          22                  


Q ss_pred             cccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCC
Q 004581          320 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS  399 (744)
Q Consensus       320 w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~  399 (744)
                            ..|++++.|+.|++||+.......                                                  
T Consensus       673 ------~~lvs~s~D~~ikiWd~~~~~~~~--------------------------------------------------  696 (793)
T PLN00181        673 ------STLVSSSTDNTLKLWDLSMSISGI--------------------------------------------------  696 (793)
T ss_pred             ------CEEEEEECCCEEEEEeCCCCcccc--------------------------------------------------
Confidence                  389999999999999986311000                                                  


Q ss_pred             CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC
Q 004581          400 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS  479 (744)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~  479 (744)
                                                   +                      ...+     ..+.+|...+..++|+|++
T Consensus       697 -----------------------------~----------------------~~~l-----~~~~gh~~~i~~v~~s~~~  720 (793)
T PLN00181        697 -----------------------------N----------------------ETPL-----HSFMGHTNVKNFVGLSVSD  720 (793)
T ss_pred             -----------------------------C----------------------Ccce-----EEEcCCCCCeeEEEEcCCC
Confidence                                         0                      0000     1122344467788899999


Q ss_pred             CEEEEEeCCCcEEEEEccCCceeeeeccCc--ccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581          480 SQLIIAGHDRRIYVVDVSSSELLHTFTPCR--EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       480 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~  549 (744)
                      .+|++|+.|+.|++|+......+..+....  .........|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       721 ~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        721 GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999987655443322110  0000111235678999999999999999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.2e-31  Score=292.66  Aligned_cols=305  Identities=14%  Similarity=0.193  Sum_probs=233.2

Q ss_pred             CCeEEEEEecCCCceeE--eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC----ce----EEEEEecCCCC
Q 004581          106 DGCVRIYRITDSDELIY--HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG----YE----IYRITVGLGGL  175 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~--~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~----~~----~~~~~~~~~~~  175 (744)
                      +|.+++|+...-.....  ...+..|.+.|.+++|+|+|++||+|+.|+.|+|||+.+.    ..    ...+       
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-------  529 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-------  529 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-------
Confidence            67788888763322111  1234569999999999999999999999999999997542    11    1111       


Q ss_pred             CCCCceeEEEEEEecC-C-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEEEEEccc
Q 004581          176 GSGPELCIWSLLSLRC-G-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~iw~~~~  252 (744)
                        .+...+.+++|++. + +|++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+..
T Consensus       530 --~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~  607 (793)
T PLN00181        530 --ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ  607 (793)
T ss_pred             --cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence              23457889999875 3 899999999999999999999999999999999999997 788999999999999999987


Q ss_pred             CcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec
Q 004581          253 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG  332 (744)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~  332 (744)
                      +.                 .+..+..+ ..+.++.|.                                .+++..|++|+
T Consensus       608 ~~-----------------~~~~~~~~-~~v~~v~~~--------------------------------~~~g~~latgs  637 (793)
T PLN00181        608 GV-----------------SIGTIKTK-ANICCVQFP--------------------------------SESGRSLAFGS  637 (793)
T ss_pred             Cc-----------------EEEEEecC-CCeEEEEEe--------------------------------CCCCCEEEEEe
Confidence            54                 13334333 467777764                                11233788888


Q ss_pred             CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEE
Q 004581          333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ  412 (744)
Q Consensus       333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (744)
                      .|+.|++||+.....                                                                 
T Consensus       638 ~dg~I~iwD~~~~~~-----------------------------------------------------------------  652 (793)
T PLN00181        638 ADHKVYYYDLRNPKL-----------------------------------------------------------------  652 (793)
T ss_pred             CCCeEEEEECCCCCc-----------------------------------------------------------------
Confidence            888888888753110                                                                 


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEE
Q 004581          413 VKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY  492 (744)
Q Consensus       413 ~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~  492 (744)
                                                               .+     ..+.+|...|.++.|. ++.+|++++.|+.|+
T Consensus       653 -----------------------------------------~~-----~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik  685 (793)
T PLN00181        653 -----------------------------------------PL-----CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK  685 (793)
T ss_pred             -----------------------------------------cc-----eEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence                                                     00     0112334467778885 778899999999999


Q ss_pred             EEEccC------CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEe-------
Q 004581          493 VVDVSS------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFIS-------  559 (744)
Q Consensus       493 v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~-------  559 (744)
                      +||+..      .+++.++.+           |...+..++|+|++++||+|+.|+.|++|+...........       
T Consensus       686 iWd~~~~~~~~~~~~l~~~~g-----------h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~  754 (793)
T PLN00181        686 LWDLSMSISGINETPLHSFMG-----------HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV  754 (793)
T ss_pred             EEeCCCCccccCCcceEEEcC-----------CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence            999863      356777877           89999999999999999999999999999987654432221       


Q ss_pred             -----cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581          560 -----RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       560 -----~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~  593 (744)
                           ..+...|.+++|+| ++.+|++++.||.|+||++
T Consensus       755 ~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        755 SGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence                 11335699999999 9999999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-32  Score=234.59  Aligned_cols=289  Identities=19%  Similarity=0.267  Sum_probs=247.8

Q ss_pred             ecccCccCcEEEEEEec---CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC
Q 004581          124 RSLPRVSGRVLSVTWSA---DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS  199 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~---dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  199 (744)
                      .+..+|..+|..++|||   +|-+|++++.|+.-.+-+-++|.-+.++.        +|.+.||+.....+. +-++++.
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe--------ghkgavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE--------GHKGAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee--------ccCcceeeeecCchhhhhhhhcc
Confidence            45679999999999985   88999999999999988889999999998        899999999988877 7888999


Q ss_pred             CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581          200 TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH  279 (744)
Q Consensus       200 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  279 (744)
                      |=+-++||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..+++||++....                +...+.+|
T Consensus        80 dftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----------------pp~E~~gh  142 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----------------PPKEISGH  142 (334)
T ss_pred             cchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC----------------CchhhcCC
Confidence            9999999999999998886 788999999999999999999999999999988764                24567899


Q ss_pred             cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581          280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR  359 (744)
Q Consensus       280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  359 (744)
                      +..|+.+.|.         ..++                        .+++.+.|++||+||.++...            
T Consensus       143 tg~Ir~v~wc---------~eD~------------------------~iLSSadd~tVRLWD~rTgt~------------  177 (334)
T KOG0278|consen  143 TGGIRTVLWC---------HEDK------------------------CILSSADDKTVRLWDHRTGTE------------  177 (334)
T ss_pred             CCcceeEEEe---------ccCc------------------------eEEeeccCCceEEEEeccCcE------------
Confidence            9999999986         3332                        788889999999999987442            


Q ss_pred             CccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC
Q 004581          360 VPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV  439 (744)
Q Consensus       360 ~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~  439 (744)
                                                                        +..+..+  .++.++.++++|++|.++..+
T Consensus       178 --------------------------------------------------v~sL~~~--s~VtSlEvs~dG~ilTia~gs  205 (334)
T KOG0278|consen  178 --------------------------------------------------VQSLEFN--SPVTSLEVSQDGRILTIAYGS  205 (334)
T ss_pred             --------------------------------------------------EEEEecC--CCCcceeeccCCCEEEEecCc
Confidence                                                              2222222  678899999999999999999


Q ss_pred             ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee-ccCcccccccCCC
Q 004581          440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF-TPCREEHDREIQP  518 (744)
Q Consensus       440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~  518 (744)
                      .|+.|+...    ..+  ++..+++.   .|.+..++|+...+++|++|..++.||..+|+.+..+ ++           
T Consensus       206 sV~Fwdaks----f~~--lKs~k~P~---nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-----------  265 (334)
T KOG0278|consen  206 SVKFWDAKS----FGL--LKSYKMPC---NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-----------  265 (334)
T ss_pred             eeEEecccc----ccc--eeeccCcc---ccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-----------
Confidence            999999865    111  22333433   6888899999999999999999999999999988886 66           


Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581          519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ  554 (744)
Q Consensus       519 ~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~  554 (744)
                      |.++|.++.|||||...|+||.||+|++|....++.
T Consensus       266 h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  266 HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             CCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            999999999999999999999999999999876543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-31  Score=226.04  Aligned_cols=293  Identities=15%  Similarity=0.161  Sum_probs=232.3

Q ss_pred             EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581           30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV  109 (744)
Q Consensus        30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i  109 (744)
                      .++||..+++.+.++.+|                                                  .+|.+++.|.++
T Consensus         5 ~l~GHERplTqiKyN~eG--------------------------------------------------DLlFscaKD~~~   34 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREG--------------------------------------------------DLLFSCAKDSTP   34 (327)
T ss_pred             ccccCccccceEEecCCC--------------------------------------------------cEEEEecCCCCc
Confidence            478999999999999999                                                  699999999999


Q ss_pred             EEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEe
Q 004581          110 RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL  189 (744)
Q Consensus       110 ~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  189 (744)
                      .+|-..+++.+   -++.||++.|.|+..+-+.+.|+||+.|.++++||+++|+++..++         ....|..+.|+
T Consensus        35 ~vw~s~nGerl---Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---------~~~~Vk~~~F~  102 (327)
T KOG0643|consen   35 TVWYSLNGERL---GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---------TNSPVKRVDFS  102 (327)
T ss_pred             eEEEecCCcee---eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---------cCCeeEEEeec
Confidence            99998888888   8999999999999999999999999999999999999999999997         67899999999


Q ss_pred             cCCeEEEEcC------CCCEEEEeCC-------CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          190 RCGTLVSADS------TGSVQFWDSR-------HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       190 ~~~~l~s~~~------dg~i~vwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      .+|.++..+.      .+.|.++|++       ..++...+..+...++.+.|.|-+++|++|..||.|.+||++++.. 
T Consensus       103 ~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-  181 (327)
T KOG0643|consen  103 FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE-  181 (327)
T ss_pred             cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-
Confidence            9995444433      3568999988       4556778888889999999999999999999999999999998753 


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                     .+...+.|++.|+.+.++         +|..                        ++++++.|.+
T Consensus       182 ---------------~v~s~~~h~~~Ind~q~s---------~d~T------------------------~FiT~s~Dtt  213 (327)
T KOG0643|consen  182 ---------------LVDSDEEHSSKINDLQFS---------RDRT------------------------YFITGSKDTT  213 (327)
T ss_pred             ---------------eeechhhhcccccccccc---------CCcc------------------------eEEecccCcc
Confidence                           355667899999999997         5555                        9999999999


Q ss_pred             EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK  416 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (744)
                      -++||..+........                                                              . 
T Consensus       214 akl~D~~tl~v~Kty~--------------------------------------------------------------t-  230 (327)
T KOG0643|consen  214 AKLVDVRTLEVLKTYT--------------------------------------------------------------T-  230 (327)
T ss_pred             ceeeeccceeeEEEee--------------------------------------------------------------e-
Confidence            9999998754322111                                                              1 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCC---Cc----eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC
Q 004581          417 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVG---QG----EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR  489 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~---~~----~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg  489 (744)
                       ..++.+.+++|....++.+.....+=........+   .+    ++.-+-..+.+|..+|++++|+|||+..++|++||
T Consensus       231 -e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG  309 (327)
T KOG0643|consen  231 -ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG  309 (327)
T ss_pred             -cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence             14566666666555555532222111111000000   00    11112256789999999999999999999999999


Q ss_pred             cEEEEEcc
Q 004581          490 RIYVVDVS  497 (744)
Q Consensus       490 ~i~v~d~~  497 (744)
                      .|++.-++
T Consensus       310 ~VR~h~Fd  317 (327)
T KOG0643|consen  310 YVRLHHFD  317 (327)
T ss_pred             eEEEEEec
Confidence            99998765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-29  Score=222.35  Aligned_cols=296  Identities=17%  Similarity=0.284  Sum_probs=228.9

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC--C
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS--T  200 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~--d  200 (744)
                      +.+..-.+.|+++.|+++|..|++++.|.++++||..+|+++..+.        .+...+..++|.... .++.++.  |
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------skkyG~~~~~Fth~~~~~i~sStk~d   79 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------SKKYGVDLACFTHHSNTVIHSSTKED   79 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--------cccccccEEEEecCCceEEEccCCCC
Confidence            5566667899999999999999999999999999999999999998        466778888888666 6666665  8


Q ss_pred             CCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeecc
Q 004581          201 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT  280 (744)
Q Consensus       201 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  280 (744)
                      .+|+.-++.+.+.++.+.||...|.+|+.+|-+..+++++.|++|++||++....                 ...+....
T Consensus        80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----------------qg~l~~~~  142 (311)
T KOG1446|consen   80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----------------QGLLNLSG  142 (311)
T ss_pred             CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----------------ceEEecCC
Confidence            8999999999999999999999999999999999999999999999999986541                 11110000


Q ss_pred             CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581          281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV  360 (744)
Q Consensus       281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  360 (744)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (311)
T KOG1446|consen  143 --------------------------------------------------------------------------------  142 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCC-
Q 004581          361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHV-  439 (744)
Q Consensus       361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~-  439 (744)
                                                                                  -..+||+|.|-++|++..+ 
T Consensus       143 ------------------------------------------------------------~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen  143 ------------------------------------------------------------RPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             ------------------------------------------------------------CcceeECCCCcEEEEecCCC
Confidence                                                                        1123455555555554222 


Q ss_pred             ceEEEEeecCCCCC-ceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCC
Q 004581          440 KPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP  518 (744)
Q Consensus       440 ~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  518 (744)
                      .|++||++.-+.+. ..+.+..    ......+.+.|||||++++.++..+.+++.|.-+|..+.++.....        
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~--------  230 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITD----NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN--------  230 (311)
T ss_pred             eEEEEEecccCCCCceeEccCC----CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC--------
Confidence            55666655432222 1111110    2233688999999999999999999999999999999999887322        


Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581          519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       519 ~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                      ...--...+|+||++++.+++.||+|++|+++++.....+.+.+..++.++.|+|   ++...++.+..+.+|=.+..++
T Consensus       231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---~~~mf~sa~s~l~fw~p~~~~~  307 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP---RYAMFVSASSNLVFWLPDEDAL  307 (311)
T ss_pred             CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC---ceeeeeecCceEEEEecccccc
Confidence            1112257789999999999999999999999999999888887788999999998   4455555677899998776654


Q ss_pred             c
Q 004581          599 G  599 (744)
Q Consensus       599 ~  599 (744)
                      .
T Consensus       308 ~  308 (311)
T KOG1446|consen  308 P  308 (311)
T ss_pred             C
Confidence            3

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.8e-30  Score=218.80  Aligned_cols=284  Identities=14%  Similarity=0.186  Sum_probs=234.3

Q ss_pred             ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      +.+..+.+|+++|.++.|+-||                                                  ++.++++.
T Consensus         8 kr~~~l~~~qgaV~avryN~dG--------------------------------------------------nY~ltcGs   37 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDG--------------------------------------------------NYCLTCGS   37 (307)
T ss_pred             hhceeecccccceEEEEEccCC--------------------------------------------------CEEEEcCC
Confidence            4566789999999999999999                                                  68999999


Q ss_pred             CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS  185 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (744)
                      |.+|++|+...+..+   +++.+|...|..++.+.|...+++|+.|..+.+||+++|+.++++.        +|...|..
T Consensus        38 drtvrLWNp~rg~li---ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r--------gH~aqVNt  106 (307)
T KOG0316|consen   38 DRTVRLWNPLRGALI---KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR--------GHLAQVNT  106 (307)
T ss_pred             CceEEeeccccccee---eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc--------cccceeeE
Confidence            999999999877666   9999999999999999999999999999999999999999999999        89999999


Q ss_pred             EEEecCC-eEEEEcCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCC
Q 004581          186 LLSLRCG-TLVSADSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS  262 (744)
Q Consensus       186 ~~~~~~~-~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  262 (744)
                      +.|+.+. .+++|+.|.++++||.++  .++++.+......|.++..+  +..|++|+.||+++.||++.+..       
T Consensus       107 V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l-------  177 (307)
T KOG0316|consen  107 VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL-------  177 (307)
T ss_pred             EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee-------
Confidence            9999988 899999999999999876  57889998888999999987  55799999999999999998763       


Q ss_pred             cccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEec
Q 004581          263 SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCA  342 (744)
Q Consensus       263 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~  342 (744)
                                  ......++|+++.|+         +++.                        ..+.++.|+++++.|-
T Consensus       178 ------------~sDy~g~pit~vs~s---------~d~n------------------------c~La~~l~stlrLlDk  212 (307)
T KOG0316|consen  178 ------------SSDYFGHPITSVSFS---------KDGN------------------------CSLASSLDSTLRLLDK  212 (307)
T ss_pred             ------------ehhhcCCcceeEEec---------CCCC------------------------EEEEeeccceeeeccc
Confidence                        224456788888886         5554                        7888888888888877


Q ss_pred             CccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeE
Q 004581          343 NEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII  422 (744)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  422 (744)
                      .+.+.+....                                                                      
T Consensus       213 ~tGklL~sYk----------------------------------------------------------------------  222 (307)
T KOG0316|consen  213 ETGKLLKSYK----------------------------------------------------------------------  222 (307)
T ss_pred             chhHHHHHhc----------------------------------------------------------------------
Confidence            6543221110                                                                      


Q ss_pred             EEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccc--cccEEEEeeCCCEEEEEeCCCcEEEEEccCCc
Q 004581          423 CSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~  500 (744)
                                                                +|..  .-...+++.....+++|++||.|++||+.+..
T Consensus       223 ------------------------------------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  223 ------------------------------------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             ------------------------------------------ccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence                                                      0000  11233455566788999999999999999999


Q ss_pred             eeeeeccCcccccccCCCCCCc-eEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          501 LLHTFTPCREEHDREIQPSEPP-ITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~-i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      .+..+..           +... |+++.++|.-..|.++...+ +..|.
T Consensus       261 ~~sk~~~-----------~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~  297 (307)
T KOG0316|consen  261 QISKLSV-----------VSTVIVTDLSCHPTMDDFITATGHG-DLFWY  297 (307)
T ss_pred             eeeeecc-----------CCceeEEeeecccCccceeEecCCc-eecee
Confidence            9888887           5665 89999999888887775444 55554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=4.5e-30  Score=221.17  Aligned_cols=277  Identities=17%  Similarity=0.196  Sum_probs=217.2

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG  201 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg  201 (744)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++.++......      .++|...|-.++|.|..  ++++++.|.
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~------~~gh~~svdql~w~~~~~d~~atas~dk   87 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV------YRGHTDSVDQLCWDPKHPDLFATASGDK   87 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhc------ccCCCcchhhheeCCCCCcceEEecCCc
Confidence            6677999999999999999999999999999999998875544433      23788999999999877  899999999


Q ss_pred             CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccC
Q 004581          202 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH  281 (744)
Q Consensus       202 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  281 (744)
                      +|++||++.++++.......+.+ -+.|+|+|+++++++.|..|.+.|.++.+.                  ........
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~------------------~~~~~~~~  148 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI------------------VNEEQFKF  148 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce------------------eehhcccc
Confidence            99999999999999887655544 589999999999999999999999887551                  11111111


Q ss_pred             cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCc
Q 004581          282 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP  361 (744)
Q Consensus       282 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  361 (744)
                      .+..++|                                                                         
T Consensus       149 e~ne~~w-------------------------------------------------------------------------  155 (313)
T KOG1407|consen  149 EVNEISW-------------------------------------------------------------------------  155 (313)
T ss_pred             eeeeeee-------------------------------------------------------------------------
Confidence            2222222                                                                         


Q ss_pred             cccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE-EEEEcCCc
Q 004581          362 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML-FAYSDHVK  440 (744)
Q Consensus       362 ~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-la~~~~~~  440 (744)
                                                                                       +.++.+ +++...|.
T Consensus       156 -----------------------------------------------------------------~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen  156 -----------------------------------------------------------------NNSNDLFFLTNGLGC  170 (313)
T ss_pred             -----------------------------------------------------------------cCCCCEEEEecCCce
Confidence                                                                             111111 11122233


Q ss_pred             eEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 004581          441 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE  520 (744)
Q Consensus       441 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  520 (744)
                      |.|.....   -..+     ..+..|.....||.|+|+|+++|+|+.|..+.+||++..-+++.+..           +.
T Consensus       171 v~ILsyps---Lkpv-----~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-----------ld  231 (313)
T KOG1407|consen  171 VEILSYPS---LKPV-----QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-----------LD  231 (313)
T ss_pred             EEEEeccc---cccc-----cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----------cc
Confidence            33332221   0011     33445666788999999999999999999999999998888899988           89


Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecC
Q 004581          521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS  585 (744)
Q Consensus       521 ~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d  585 (744)
                      -+|..+.||.||++||+|+.|..|-|=++++|..++.++  +.++-..++|+| ...+||.+++|
T Consensus       232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHP-k~~LLAyA~dd  293 (313)
T KOG1407|consen  232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHP-KRPLLAYACDD  293 (313)
T ss_pred             CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecC-CCceeeEEecC
Confidence            999999999999999999999999999999999999987  456889999999 98999999876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-30  Score=252.84  Aligned_cols=356  Identities=17%  Similarity=0.253  Sum_probs=266.0

Q ss_pred             CCCCCe-eEEecCCCeEEEEEccCCc------eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCC
Q 004581            2 GLPGGR-LFSSSIDGSVSEWDLYDLK------QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD   74 (744)
Q Consensus         2 ~~~~~~-l~~~~~d~~i~iwd~~~~~------~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (744)
                      ..|+++ |++||.||.|++|+...-.      .+.+++.|..+|..++...++                           
T Consensus        33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~---------------------------   85 (735)
T KOG0308|consen   33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG---------------------------   85 (735)
T ss_pred             cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC---------------------------
Confidence            356666 9999999999999986432      367889999999999999998                           


Q ss_pred             CcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEE-ecCCCEEEEEeCCCe
Q 004581           75 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW-SADGNMLYSGSSDGY  153 (744)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~-s~dg~~l~t~~~dg~  153 (744)
                                             +.|++++.|-+|++|+...+. -.+..++..|...|.|+++ -++...+|+|+-|+.
T Consensus        86 -----------------------~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~  141 (735)
T KOG0308|consen   86 -----------------------KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK  141 (735)
T ss_pred             -----------------------CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCcc
Confidence                                   589999999999999998553 3344899999999999999 888899999999999


Q ss_pred             EEEEEccCCc--eEEEEEecC-CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEE
Q 004581          154 IRSWDAKLGY--EIYRITVGL-GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAA  229 (744)
Q Consensus       154 i~vwd~~~~~--~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~  229 (744)
                      |.+||+++|.  .+..+..-. .....++...|++++..+.| .+++|+..+.|++||.++++.+..+++|+..|.++..
T Consensus       142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~  221 (735)
T KOG0308|consen  142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV  221 (735)
T ss_pred             EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence            9999999883  343333211 12223788999999999999 7899999999999999999999999999999999999


Q ss_pred             cCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCC
Q 004581          230 APSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR  309 (744)
Q Consensus       230 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~  309 (744)
                      ++||+.+++++.||+|++||+....                 ++.++..|...|.++..++                   
T Consensus       222 ~dDGt~~ls~sSDgtIrlWdLgqQr-----------------Cl~T~~vH~e~VWaL~~~~-------------------  265 (735)
T KOG0308|consen  222 NDDGTRLLSASSDGTIRLWDLGQQR-----------------CLATYIVHKEGVWALQSSP-------------------  265 (735)
T ss_pred             cCCCCeEeecCCCceEEeeeccccc-----------------eeeeEEeccCceEEEeeCC-------------------
Confidence            9999999999999999999999877                 5788899999999998852                   


Q ss_pred             CCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeec--CCeEEEEEeCCeEEEE
Q 004581          310 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS--HTSLLLVQYSCRLDIL  387 (744)
Q Consensus       310 ~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~i~i~  387 (744)
                                    ....+++|+.|+.|..-|+++.......-.       ...++..+...  .+...+.+.+..++-|
T Consensus       266 --------------sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-------~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  266 --------------SFTHVYSGGRDGNIYRTDLRNPAKSTLICK-------EDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             --------------CcceEEecCCCCcEEecccCCchhheEeec-------CCCchhhhhhccccCCceeeeccccceec
Confidence                          223999999999999999987532211110       11223333333  2333566666677666


Q ss_pred             EeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCccc
Q 004581          388 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL  467 (744)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~  467 (744)
                      .....                               .++++.|++...+++....+++...   +      .....++..
T Consensus       325 ~~~~~-------------------------------~~l~~s~~~~~~~T~~~~~~~~~~~---t------p~~vi~Gg~  364 (735)
T KOG0308|consen  325 KLEPD-------------------------------IALSVSGDLDFFSTDSNNHSCDLTN---T------PDSVIPGGA  364 (735)
T ss_pred             CCccc-------------------------------cccccCCCCCcccccCCCccccccC---C------CceeccCch
Confidence            54421                               1455556555555554433333321   0      001111111


Q ss_pred             ccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeec
Q 004581          468 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT  506 (744)
Q Consensus       468 ~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~  506 (744)
                       .+..-++-.|.+++++-...|.+.+||+-....+..|.
T Consensus       365 -ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  365 -AIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             -hhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence             34444556788999999999999999997666655554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.2e-31  Score=235.97  Aligned_cols=293  Identities=17%  Similarity=0.199  Sum_probs=234.6

Q ss_pred             CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW  206 (744)
Q Consensus       128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw  206 (744)
                      +....+.|..|||||++|++|+.||.|.+||..+|+....++-..+...--+...|.|+.|+.|. .+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45667899999999999999999999999999999877665533332223477899999999999 89999999999999


Q ss_pred             eCCCcceEEEee-ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCccee
Q 004581          207 DSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA  285 (744)
Q Consensus       207 d~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  285 (744)
                      .+++|.+++.+. +|...|+|+.|+.|+..+++++.|.++++--+.++.                 ++..+++|+.-|+.
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-----------------~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-----------------CLKEFRGHSSYVNE  353 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-----------------hHHHhcCccccccc
Confidence            999999999987 899999999999999999999999999999999887                 37889999999999


Q ss_pred             eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581          286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV  365 (744)
Q Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v  365 (744)
                      ..|.         +||.                        .+++++.||+|++|+..+..-.......           
T Consensus       354 a~ft---------~dG~------------------------~iisaSsDgtvkvW~~KtteC~~Tfk~~-----------  389 (508)
T KOG0275|consen  354 ATFT---------DDGH------------------------HIISASSDGTVKVWHGKTTECLSTFKPL-----------  389 (508)
T ss_pred             eEEc---------CCCC------------------------eEEEecCCccEEEecCcchhhhhhccCC-----------
Confidence            9996         5554                        9999999999999999875433222100           


Q ss_pred             cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEEEcCCceEE
Q 004581          366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAYSDHVKPSL  443 (744)
Q Consensus       366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~la~~~~~~v~l  443 (744)
                                                                        +....+.++-.-|..  .++++...+++.+
T Consensus       390 --------------------------------------------------~~d~~vnsv~~~PKnpeh~iVCNrsntv~i  419 (508)
T KOG0275|consen  390 --------------------------------------------------GTDYPVNSVILLPKNPEHFIVCNRSNTVYI  419 (508)
T ss_pred             --------------------------------------------------CCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence                                                              011334444444433  3444456777777


Q ss_pred             EEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCce
Q 004581          444 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI  523 (744)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i  523 (744)
                      .++..    ..+-......  ...+...+.+.||.|.++.+.++|+.++.|...+|++.+++..           |...+
T Consensus       420 mn~qG----QvVrsfsSGk--REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-----------hEkdv  482 (508)
T KOG0275|consen  420 MNMQG----QVVRSFSSGK--REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-----------HEKDV  482 (508)
T ss_pred             Eeccc----eEEeeeccCC--ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-----------ccccc
Confidence            77653    1111111111  1122455677899999999999999999999999999999998           89999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          524 TKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       524 ~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      ..++-+|..+.||+-+.||.+++|.
T Consensus       483 IGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  483 IGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999999999994

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-30  Score=236.87  Aligned_cols=192  Identities=16%  Similarity=0.178  Sum_probs=162.1

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccC---CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      +|..|.+||+++.|.+..+|++..   .+...++.+|..+|..+.||||.                              
T Consensus       232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd------------------------------  281 (519)
T KOG0293|consen  232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD------------------------------  281 (519)
T ss_pred             EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC------------------------------
Confidence            467899999999999999998864   34578999999999999999999                              


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRS  156 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~v  156 (744)
                                          ++|++++.|..+++||+.+++..   +.+. +|...+.+++|.|||..+++|+.|++|..
T Consensus       282 --------------------ryLlaCg~~e~~~lwDv~tgd~~---~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  282 --------------------RYLLACGFDEVLSLWDVDTGDLR---HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM  338 (519)
T ss_pred             --------------------CeEEecCchHheeeccCCcchhh---hhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence                                67888888889999999988875   3332 45689999999999999999999999999


Q ss_pred             EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR  235 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  235 (744)
                      ||+ .|........       .....|++++.++|| ++++.+.|..|++++.++...+..+.. ..+|++++.|.|+++
T Consensus       339 wdl-Dgn~~~~W~g-------vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~  409 (519)
T KOG0293|consen  339 WDL-DGNILGNWEG-------VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKL  409 (519)
T ss_pred             ecC-Ccchhhcccc-------cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcCCCcE
Confidence            998 4655555542       344779999999999 888888999999999987665544443 578999999999999


Q ss_pred             EEeecCCCeEEEEEcccCc
Q 004581          236 VFSTGSDGQVILYKASCES  254 (744)
Q Consensus       236 l~~~~~dg~i~iw~~~~~~  254 (744)
                      +++.-.+..+.+||+....
T Consensus       410 ~LvnL~~qei~LWDl~e~~  428 (519)
T KOG0293|consen  410 ALVNLQDQEIHLWDLEENK  428 (519)
T ss_pred             EEEEcccCeeEEeecchhh
Confidence            9998889999999988543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.7e-29  Score=258.11  Aligned_cols=308  Identities=19%  Similarity=0.281  Sum_probs=248.6

Q ss_pred             CCceeEEEEEEecCC-eEEEEc--CCCCEEEEeCCC------------cceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581          178 GPELCIWSLLSLRCG-TLVSAD--STGSVQFWDSRH------------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD  242 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~--~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d  242 (744)
                      .+...|.++..+||+ .+++|+  .|+.++||+.+.            .+.+.+...|.+.|+|+.|+|||++||+|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            455679999999999 899999  899999998752            34567778899999999999999999999999


Q ss_pred             CeEEEEEcccCcCC-CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581          243 GQVILYKASCESIG-PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       243 g~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      +.|.+|........ .....-......+|.....+++|..+|..++|+         |++.                   
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws---------p~~~-------------------  142 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS---------PDDS-------------------  142 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC---------CCcc-------------------
Confidence            99999998851111 111112234568899999999999999999998         6666                   


Q ss_pred             cCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCC
Q 004581          322 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS  401 (744)
Q Consensus       322 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~  401 (744)
                           +|++++.|++|.+|+..++..                                                      
T Consensus       143 -----~lvS~s~DnsViiwn~~tF~~------------------------------------------------------  163 (942)
T KOG0973|consen  143 -----LLVSVSLDNSVIIWNAKTFEL------------------------------------------------------  163 (942)
T ss_pred             -----EEEEecccceEEEEcccccee------------------------------------------------------
Confidence                 999999999999999987531                                                      


Q ss_pred             CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeec---cCC--cccccccEEEE
Q 004581          402 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKR---QLP--RKLQFAHSMIF  475 (744)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~--~~~~~v~~i~~  475 (744)
                               .+....|...|-.+.|.|-|+|+|+ ++|+++++|+...       |.+.+.   .+.  ........+.|
T Consensus       164 ---------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-------w~i~k~It~pf~~~~~~T~f~RlSW  227 (942)
T KOG0973|consen  164 ---------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-------WGIEKSITKPFEESPLTTFFLRLSW  227 (942)
T ss_pred             ---------eeeeecccccccceEECCccCeeeeecCCceEEEEEccc-------ceeeEeeccchhhCCCcceeeeccc
Confidence                     1222356688899999999999999 7999999999653       333321   111  11226788999


Q ss_pred             eeCCCEEEEEeC----CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCC-----CC------------E
Q 004581          476 SYDSSQLIIAGH----DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-----GQ------------W  534 (744)
Q Consensus       476 spd~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----g~------------~  534 (744)
                      ||||++|++...    -..+.|.+-.+.+.-..|-+           |.+++.++.|+|.     .+            .
T Consensus       228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-----------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i  296 (942)
T KOG0973|consen  228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-----------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI  296 (942)
T ss_pred             CCCcCeecchhhccCCcceeEEEecCCceeeeeeec-----------CCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence            999999998743    23788998888888888888           9999999999981     11            6


Q ss_pred             EEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcccc
Q 004581          535 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE  600 (744)
Q Consensus       535 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~  600 (744)
                      +|+|+.|+.|.||.....++...+.......|..|+|+| ||..|++++.||+|.++.++.+++..
T Consensus       297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG~  361 (942)
T KOG0973|consen  297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELGV  361 (942)
T ss_pred             EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhCc
Confidence            789999999999999988887777666668999999999 99999999999999999998776543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=231.30  Aligned_cols=273  Identities=17%  Similarity=0.228  Sum_probs=216.2

Q ss_pred             CeEEEEecCCeEEEEEecCCCce---e--EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581           98 RRVALACDDGCVRIYRITDSDEL---I--YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL  172 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~---~--~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~  172 (744)
                      ++|++|+.||.|.+||..+|+.-   .  ..-.|.-|..+|.|++||.|..+||+|+.||.|+||.+++|.+++++..  
T Consensus       226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr--  303 (508)
T KOG0275|consen  226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR--  303 (508)
T ss_pred             ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh--
Confidence            69999999999999999876532   1  1123446788999999999999999999999999999999999999974  


Q ss_pred             CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581          173 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       173 ~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                           .|...|+|+.|+.|+ .+++++.|.++++--+++|+++..+++|..-|+...|.+||.++++++.||+|++|+..
T Consensus       304 -----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K  378 (508)
T KOG0275|consen  304 -----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK  378 (508)
T ss_pred             -----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence                 699999999999999 99999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCcCCCCCCCCcccccceEEEEeeeee--ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581          252 CESIGPNDGLSSSEVIKKWIYVGSVRA--HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI  329 (744)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~  329 (744)
                      +..+                 +.++..  ....|.++-.-         |                       .+.+.++
T Consensus       379 tteC-----------------~~Tfk~~~~d~~vnsv~~~---------P-----------------------Knpeh~i  409 (508)
T KOG0275|consen  379 TTEC-----------------LSTFKPLGTDYPVNSVILL---------P-----------------------KNPEHFI  409 (508)
T ss_pred             chhh-----------------hhhccCCCCcccceeEEEc---------C-----------------------CCCceEE
Confidence            8763                 333322  23344454432         1                       1234788


Q ss_pred             EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581          330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL  409 (744)
Q Consensus       330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  409 (744)
                      .+....++++.++...                  .+.+                     +..+.                
T Consensus       410 VCNrsntv~imn~qGQ------------------vVrs---------------------fsSGk----------------  434 (508)
T KOG0275|consen  410 VCNRSNTVYIMNMQGQ------------------VVRS---------------------FSSGK----------------  434 (508)
T ss_pred             EEcCCCeEEEEeccce------------------EEee---------------------eccCC----------------
Confidence            8888888887766430                  0000                     00000                


Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCC
Q 004581          410 LVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD  488 (744)
Q Consensus       410 ~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~d  488 (744)
                            ...+...++++||.|.++.+ +.|+.++.|....+  +..      ..++-|...+..++-+|..+.||+-++|
T Consensus       435 ------REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG--~LE------~tl~VhEkdvIGl~HHPHqNllAsYsED  500 (508)
T KOG0275|consen  435 ------REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG--KLE------RTLPVHEKDVIGLTHHPHQNLLASYSED  500 (508)
T ss_pred             ------ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC--cee------eeeecccccccccccCcccchhhhhccc
Confidence                  11245667789999999887 79999999998762  222      3455566678888999999999999999


Q ss_pred             CcEEEEE
Q 004581          489 RRIYVVD  495 (744)
Q Consensus       489 g~i~v~d  495 (744)
                      |.+++|.
T Consensus       501 gllKLWk  507 (508)
T KOG0275|consen  501 GLLKLWK  507 (508)
T ss_pred             chhhhcC
Confidence            9999995

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=5.8e-29  Score=225.83  Aligned_cols=297  Identities=19%  Similarity=0.195  Sum_probs=237.3

Q ss_pred             CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC----eEEEEcCCCCE
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSV  203 (744)
Q Consensus       128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i  203 (744)
                      .|...|.++.-.  +++++||+.||.+++||. .|+.+..+.        +|.++|.++++...+    .+++++.|.++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~--------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIV--------GHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEe--------cCCcceeeeEEEecCCccceEEEecCCceE
Confidence            488899998887  789999999999999996 688888888        799999988776433    59999999999


Q ss_pred             EEEeCCCcce----EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCc--------ccccceEE
Q 004581          204 QFWDSRHGTL----LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS--------SEVIKKWI  271 (744)
Q Consensus       204 ~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------~~~~~~~~  271 (744)
                      ++|.++.+..    +...++|.+.|.++...++|.++++|+.|.+|.+|+.........+....        ......-.
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            9999887654    34456999999999999999999999999999999943332211111111        11112233


Q ss_pred             EEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCc
Q 004581          272 YVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPH  351 (744)
Q Consensus       272 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  351 (744)
                      ++..+.+|..+|.++.|+          +.                        ..+++++.|.+|+.||+.+.....  
T Consensus       252 P~vtl~GHt~~Vs~V~w~----------d~------------------------~v~yS~SwDHTIk~WDletg~~~~--  295 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWS----------DA------------------------TVIYSVSWDHTIKVWDLETGGLKS--  295 (423)
T ss_pred             ceEEecccccceeeEEEc----------CC------------------------CceEeecccceEEEEEeeccccee--
Confidence            467789999999999995          22                        389999999999999998643211  


Q ss_pred             ccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC
Q 004581          352 EICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM  431 (744)
Q Consensus       352 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  431 (744)
                                                                                  ++  .....+.|+..+|..+
T Consensus       296 ------------------------------------------------------------~~--~~~ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  296 ------------------------------------------------------------TL--TTNKSLNCISYSPLSK  313 (423)
T ss_pred             ------------------------------------------------------------ee--ecCcceeEeecccccc
Confidence                                                                        11  1126688999999999


Q ss_pred             EEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCC-EEEEEeCCCcEEEEEccCCc-eeeeeccC
Q 004581          432 LFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSSE-LLHTFTPC  508 (744)
Q Consensus       432 ~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~~~~~dg~i~v~d~~~~~-~~~~~~~~  508 (744)
                      +|++| ++..+++||.+.+++...     ...+.+|...|.++.|+|... .|++++.|+++++||+.+.+ ++..+.+ 
T Consensus       314 Ll~~gssdr~irl~DPR~~~gs~v-----~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-  387 (423)
T KOG0313|consen  314 LLASGSSDRHIRLWDPRTGDGSVV-----SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-  387 (423)
T ss_pred             eeeecCCCCceeecCCCCCCCcee-----EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-
Confidence            99994 999999999998544433     377899999999999999665 57888999999999998776 8999998 


Q ss_pred             cccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                                |...|.++.|+. +.++++|+.|.+|+|+.-.
T Consensus       388 ----------h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  388 ----------HNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ----------CCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence                      999999999964 5689999999999998643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.5e-30  Score=218.97  Aligned_cols=291  Identities=15%  Similarity=0.177  Sum_probs=240.5

Q ss_pred             EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581           29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC  108 (744)
Q Consensus        29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~  108 (744)
                      .+..+|..+|-.++|||--                                               ++|-+|+++|.|+.
T Consensus         8 l~c~ghtrpvvdl~~s~it-----------------------------------------------p~g~flisa~kd~~   40 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPIT-----------------------------------------------PDGYFLISASKDGK   40 (334)
T ss_pred             eEEcCCCcceeEEeccCCC-----------------------------------------------CCceEEEEeccCCC
Confidence            4567899999999999643                                               22258999999999


Q ss_pred             EEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEE
Q 004581          109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS  188 (744)
Q Consensus       109 i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  188 (744)
                      -.+-+-+++.-+   -+|.+|.+.|.+.+.+.+....|+++.|=+.+|||.-+|..++.+.         |...|.+++|
T Consensus        41 pmlr~g~tgdwi---gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~---------hkhivk~~af  108 (334)
T KOG0278|consen   41 PMLRNGDTGDWI---GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE---------HKHIVKAVAF  108 (334)
T ss_pred             chhccCCCCCcE---EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh---------hhheeeeEEe
Confidence            888877777776   8999999999999999999999999999999999999999999986         8999999999


Q ss_pred             ecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccc
Q 004581          189 LRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV  266 (744)
Q Consensus       189 ~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  266 (744)
                      +.|. +|++|+.+..++|+|++. ..+...+.+|.+.|..+.|....+.|++++.|++||+||.+++..           
T Consensus       109 ~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----------  177 (334)
T KOG0278|consen  109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----------  177 (334)
T ss_pred             cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-----------
Confidence            9999 999999999999999986 346678999999999999999999999999999999999999872           


Q ss_pred             cceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581          267 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       267 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                            +.. ....+.|.++.++         ++|.                         +++-...+.|.+||...+.
T Consensus       178 ------v~s-L~~~s~VtSlEvs---------~dG~-------------------------ilTia~gssV~Fwdaksf~  216 (334)
T KOG0278|consen  178 ------VQS-LEFNSPVTSLEVS---------QDGR-------------------------ILTIAYGSSVKFWDAKSFG  216 (334)
T ss_pred             ------EEE-EecCCCCcceeec---------cCCC-------------------------EEEEecCceeEEecccccc
Confidence                  333 3455678888887         6663                         6666667889999998765


Q ss_pred             CCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581          347 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI  426 (744)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  426 (744)
                      .+....                                                              .  ..+|.+.++
T Consensus       217 ~lKs~k--------------------------------------------------------------~--P~nV~SASL  232 (334)
T KOG0278|consen  217 LLKSYK--------------------------------------------------------------M--PCNVESASL  232 (334)
T ss_pred             ceeecc--------------------------------------------------------------C--ccccccccc
Confidence            443221                                                              1  156778889


Q ss_pred             cCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCce
Q 004581          427 SNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL  501 (744)
Q Consensus       427 s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~  501 (744)
                      +|+...+++ +.+..++.||..++   ..+   . .-..+|..+|.|+.|+|||...|+|++||+|++|....++.
T Consensus       233 ~P~k~~fVaGged~~~~kfDy~Tg---eEi---~-~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  233 HPKKEFFVAGGEDFKVYKFDYNTG---EEI---G-SYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cCCCceEEecCcceEEEEEeccCC---cee---e-ecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            998877766 58889999998872   222   0 11467888999999999999999999999999999865543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.6e-28  Score=222.92  Aligned_cols=245  Identities=18%  Similarity=0.178  Sum_probs=198.0

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      .+++++|+.||++++||. .|+...++.+|.++|.++++.-....-                                  
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~----------------------------------  159 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSS----------------------------------  159 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCcc----------------------------------
Confidence            567999999999999995 779999999999999988775433110                                  


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCce-eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL-IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                                   ..+++++.|.++++|.++.++.. ...+...||+..|.+++..++|..+++|+.|.+|.||+.++..
T Consensus       160 -------------~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~  226 (423)
T KOG0313|consen  160 -------------CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE  226 (423)
T ss_pred             -------------ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc
Confidence                         37999999999999999855432 2234555999999999999999999999999999999932210


Q ss_pred             --eEEEEEe---------c------CCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeE
Q 004581          164 --EIYRITV---------G------LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNA  226 (744)
Q Consensus       164 --~~~~~~~---------~------~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  226 (744)
                        .......         .      +-....+|..+|.++.|++.+.+++++.|.+|+.||+.++..+.++.+ ...++|
T Consensus       227 ~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~  305 (423)
T KOG0313|consen  227 EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNC  305 (423)
T ss_pred             cccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeE
Confidence              0000000         0      000123899999999999988999999999999999999999988886 678999


Q ss_pred             EEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccccc
Q 004581          227 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS  306 (744)
Q Consensus       227 l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~  306 (744)
                      +.++|..++|++|+.|..+++||.+.+.-              -....++.+|.+-|.++.++         |..     
T Consensus       306 i~~~~~~~Ll~~gssdr~irl~DPR~~~g--------------s~v~~s~~gH~nwVssvkws---------p~~-----  357 (423)
T KOG0313|consen  306 ISYSPLSKLLASGSSDRHIRLWDPRTGDG--------------SVVSQSLIGHKNWVSSVKWS---------PTN-----  357 (423)
T ss_pred             eecccccceeeecCCCCceeecCCCCCCC--------------ceeEEeeecchhhhhheecC---------CCC-----
Confidence            99999999999999999999999988752              12356788999999999987         333     


Q ss_pred             CCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          307 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       307 ~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                                        ...|++++.|+++++||.+.
T Consensus       358 ------------------~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  358 ------------------EFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             ------------------ceEEEEEecCCeEEEEEecc
Confidence                              24899999999999999986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.8e-28  Score=249.67  Aligned_cols=285  Identities=20%  Similarity=0.249  Sum_probs=235.2

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      .++++++.|++|++||..++..+.  ..+.+|.+.|.+++|..-+..|++|+.|.++++||..+|++.+.+.        
T Consensus       219 ~~~~~~s~~~tl~~~~~~~~~~i~--~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--------  288 (537)
T KOG0274|consen  219 GFFKSGSDDSTLHLWDLNNGYLIL--TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--------  288 (537)
T ss_pred             CeEEecCCCceeEEeecccceEEE--eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--------
Confidence            389999999999999998666652  4499999999999998878999999999999999999999999998        


Q ss_pred             CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCC
Q 004581          178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP  257 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  257 (744)
                      +|...|.++...+. .+++|+.|.+|++|+++++.++..+.+|.++|.++..+  +.++++|+.|++|++|+..+.+   
T Consensus       289 gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~---  362 (537)
T KOG0274|consen  289 GHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK---  362 (537)
T ss_pred             CCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce---
Confidence            79999998876532 78889999999999999999999999999999999998  7899999999999999999776   


Q ss_pred             CCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeE
Q 004581          258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL  337 (744)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i  337 (744)
                                    ++..+.+|+..|+++.+.         +.                         +.+++|+.|++|
T Consensus       363 --------------cl~sl~gH~~~V~sl~~~---------~~-------------------------~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  363 --------------CLKSLSGHTGRVYSLIVD---------SE-------------------------NRLLSGSLDTTI  394 (537)
T ss_pred             --------------eeeeecCCcceEEEEEec---------Cc-------------------------ceEEeeeeccce
Confidence                          589999999999999873         11                         389999999999


Q ss_pred             EEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC
Q 004581          338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA  417 (744)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (744)
                      ++||+.+...                                                             ++       
T Consensus       395 kvWdl~~~~~-------------------------------------------------------------c~-------  406 (537)
T KOG0274|consen  395 KVWDLRTKRK-------------------------------------------------------------CI-------  406 (537)
T ss_pred             EeecCCchhh-------------------------------------------------------------hh-------
Confidence            9999986310                                                             00       


Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581          418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~  497 (744)
                                                                 ..+.+|..-+..+.  ..+++|++++.|++|++||..
T Consensus       407 -------------------------------------------~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  407 -------------------------------------------HTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAE  441 (537)
T ss_pred             -------------------------------------------hhhcCCcccccccc--cccceeEeccccccEEEeecc
Confidence                                                       11122222222333  367899999999999999999


Q ss_pred             CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581          498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF  571 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~  571 (744)
                      ++++++++.+.          |...|+.+++.  ...+++++.||.+++||+.+++....+..........+++
T Consensus       442 ~~~~~~~~~~~----------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~  503 (537)
T KOG0274|consen  442 EGECLRTLEGR----------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP  503 (537)
T ss_pred             cCceeeeeccC----------CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence            99999999973          46889988876  4578888999999999999998876653333333444444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-28  Score=213.17  Aligned_cols=294  Identities=14%  Similarity=0.170  Sum_probs=225.7

Q ss_pred             cccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCE
Q 004581          125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV  203 (744)
Q Consensus       125 ~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i  203 (744)
                      .+.||+.+++.+.|+.+|.+|++|+.|.++.||-..+|+.+.++.        +|.+.||++....+. .+++|+.|.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~--------GHtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD--------GHTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec--------CCCceEEEEEecCCcceeeecccccee
Confidence            467999999999999999999999999999999999999999998        899999999999888 89999999999


Q ss_pred             EEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeec-----CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeee
Q 004581          204 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG-----SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA  278 (744)
Q Consensus       204 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (744)
                      ++||.++|+++.+++. ..+|..+.|+++|++++...     ..+.|.++|++......          ..-.+...+..
T Consensus        77 kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~----------~s~ep~~kI~t  145 (327)
T KOG0643|consen   77 KLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI----------DSEEPYLKIPT  145 (327)
T ss_pred             EEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh----------cccCceEEecC
Confidence            9999999999999986 67999999999999887764     35779999988543100          00112344455


Q ss_pred             ccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCC
Q 004581          279 HTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQ  358 (744)
Q Consensus       279 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~  358 (744)
                      +...++..-|.         |-+                        +.|++|..||.|..||+++...+          
T Consensus       146 ~~skit~a~Wg---------~l~------------------------~~ii~Ghe~G~is~~da~~g~~~----------  182 (327)
T KOG0643|consen  146 PDSKITSALWG---------PLG------------------------ETIIAGHEDGSISIYDARTGKEL----------  182 (327)
T ss_pred             Cccceeeeeec---------ccC------------------------CEEEEecCCCcEEEEEcccCcee----------
Confidence            56666666664         333                        49999999999999999864321          


Q ss_pred             CCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-Ec
Q 004581          359 RVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SD  437 (744)
Q Consensus       359 ~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~  437 (744)
                                                                          ..-...|...|..+.+++|..++++ +.
T Consensus       183 ----------------------------------------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  183 ----------------------------------------------------VDSDEEHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             ----------------------------------------------------eechhhhccccccccccCCcceEEeccc
Confidence                                                                1112234568899999999999988 48


Q ss_pred             CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCc--EEEEEccCC------------ceee
Q 004581          438 HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR--IYVVDVSSS------------ELLH  503 (744)
Q Consensus       438 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~--i~v~d~~~~------------~~~~  503 (744)
                      |.+.++|++..    ..+  +++   .....++++.+++|-..+++.|+....  |.--+...|            +.+.
T Consensus       211 Dttakl~D~~t----l~v--~Kt---y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig  281 (327)
T KOG0643|consen  211 DTTAKLVDVRT----LEV--LKT---YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG  281 (327)
T ss_pred             Cccceeeeccc----eee--EEE---eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence            88889998865    111  111   122338999999998888887764322  211111222            2334


Q ss_pred             eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc
Q 004581          504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ  552 (744)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~  552 (744)
                      .+++           |-++|++++|+|+|+..++|+.||.|++...+..
T Consensus       282 rvkG-----------HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  282 RVKG-----------HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cccc-----------cccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            4444           9999999999999999999999999999866543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.2e-28  Score=209.11  Aligned_cols=278  Identities=19%  Similarity=0.215  Sum_probs=226.8

Q ss_pred             EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581           29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC  108 (744)
Q Consensus        29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~  108 (744)
                      +.+++|...|.+|+|+.+|                                                  ..||+|+.|++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g--------------------------------------------------~~lasgs~dkt   43 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDG--------------------------------------------------TKLASGSFDKT   43 (313)
T ss_pred             HHhhhhhhcceEEEEcccC--------------------------------------------------ceeeecccCCc
Confidence            5577899999999999999                                                  69999999999


Q ss_pred             EEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581          109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL  187 (744)
Q Consensus       109 i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  187 (744)
                      +.+|++... .+.......+|.+.|-.++|+| ....|++++.|.+|++||++++++...+..         ...-.-+.
T Consensus        44 v~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~---------~~eni~i~  113 (313)
T KOG1407|consen   44 VSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET---------KGENINIT  113 (313)
T ss_pred             eEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec---------cCcceEEE
Confidence            999999844 4444456779999999999987 456899999999999999999999999873         23334467


Q ss_pred             EecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccc
Q 004581          188 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV  266 (744)
Q Consensus       188 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  266 (744)
                      |+|+| +++.++.|..|.+.|.++.+.+...+. .-.+..++|+.++++++.....|.|.|.....-+            
T Consensus       114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk------------  180 (313)
T KOG1407|consen  114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK------------  180 (313)
T ss_pred             EcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc------------
Confidence            89988 999999999999999998887766654 5678889999888888888788999998887544            


Q ss_pred             cceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581          267 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       267 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                           ++..+..|.....|+.|+         |+|+                        ++++|+.|..+.+||+.+.-
T Consensus       181 -----pv~si~AH~snCicI~f~---------p~Gr------------------------yfA~GsADAlvSLWD~~ELi  222 (313)
T KOG1407|consen  181 -----PVQSIKAHPSNCICIEFD---------PDGR------------------------YFATGSADALVSLWDVDELI  222 (313)
T ss_pred             -----cccccccCCcceEEEEEC---------CCCc------------------------eEeeccccceeeccChhHhh
Confidence                 366777787777777776         6666                        78888888888888776421


Q ss_pred             CCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581          347 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI  426 (744)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  426 (744)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (313)
T KOG1407|consen  223 --------------------------------------------------------------------------------  222 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeec
Q 004581          427 SNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFT  506 (744)
Q Consensus       427 s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~  506 (744)
                                                 ++     ..+..+.-+|+.+.||.||++||+|++|..|-|=++++|..+..++
T Consensus       223 ---------------------------C~-----R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  223 ---------------------------CE-----RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             ---------------------------hh-----eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence                                       10     1122222378899999999999999999999999999999999988


Q ss_pred             cCcccccccCCCCCCceEEEEECCCCCEEEEEeCC
Q 004581          507 PCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF  541 (744)
Q Consensus       507 ~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d  541 (744)
                                  +.++...++|+|...+||.+..|
T Consensus       271 ------------~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  271 ------------CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ------------ccCCceeEEecCCCceeeEEecC
Confidence                        58999999999999999988765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-28  Score=230.31  Aligned_cols=283  Identities=18%  Similarity=0.187  Sum_probs=233.8

Q ss_pred             ccCcEEEEEEecCCCE-EEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581          129 VSGRVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW  206 (744)
Q Consensus       129 h~~~V~~~~~s~dg~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw  206 (744)
                      ....|.+++|||...+ +|+.+. -.+.+|+..+......+.        .....|+++.|..|| ++++|+..|.|+++
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~s--------rFk~~v~s~~fR~DG~LlaaGD~sG~V~vf   95 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFS--------RFKDVVYSVDFRSDGRLLAAGDESGHVKVF   95 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHH--------hhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence            3468999999995542 444443 379999988877766665        577889999999999 88899999999999


Q ss_pred             eCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCccee
Q 004581          207 DSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRA  285 (744)
Q Consensus       207 d~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  285 (744)
                      |+.+...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+..                 ....+.+|++.|++
T Consensus        96 D~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----------------v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   96 DMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----------------VQAELSGHTDYVRC  158 (487)
T ss_pred             ccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----------------EEEEecCCcceeEe
Confidence            988777888999999999999999965 556678889999999998865                 24578999999999


Q ss_pred             eeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccc
Q 004581          286 LTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV  365 (744)
Q Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v  365 (744)
                      .++++         .                       +...++|||.||.|++||++...                   
T Consensus       159 g~~~~---------~-----------------------~~hivvtGsYDg~vrl~DtR~~~-------------------  187 (487)
T KOG0310|consen  159 GDISP---------A-----------------------NDHIVVTGSYDGKVRLWDTRSLT-------------------  187 (487)
T ss_pred             ecccc---------C-----------------------CCeEEEecCCCceEEEEEeccCC-------------------
Confidence            99962         1                       22389999999999999998632                   


Q ss_pred             cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEE
Q 004581          366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE  445 (744)
Q Consensus       366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~  445 (744)
                                                                  -......|..+|..+.+-|.|..+|++....+++||
T Consensus       188 --------------------------------------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD  223 (487)
T KOG0310|consen  188 --------------------------------------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD  223 (487)
T ss_pred             --------------------------------------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence                                                        011234466889999999999999999999999999


Q ss_pred             eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581          446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK  525 (744)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  525 (744)
                      +..  ++..+     .....|...|+|+++..++..|++++-|+.|++||+.+.+.+..+.            ..++|.+
T Consensus       224 l~~--G~qll-----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLs  284 (487)
T KOG0310|consen  224 LTT--GGQLL-----TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLS  284 (487)
T ss_pred             ecC--Cceeh-----hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceee
Confidence            986  22222     3344588899999999999999999999999999999999999998            5899999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEECCC
Q 004581          526 MFTSSDGQWLAAVNCFGDVYIFNLEI  551 (744)
Q Consensus       526 l~~spdg~~las~~~dg~i~iwd~~~  551 (744)
                      ++.|||++.++.|-.||.+.+-+...
T Consensus       285 iavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  285 IAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEecCCCceEEEecccceeeeehhhc
Confidence            99999999999999999887764443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=232.47  Aligned_cols=285  Identities=18%  Similarity=0.179  Sum_probs=226.6

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST  200 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d  200 (744)
                      ..+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+..+.        +..+.|.++.|.+++ .+++++.|
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------Gs~g~it~~d~d~~~~~~iAas~d  240 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--------GSLGNITSIDFDSDNKHVIAASND  240 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--------ccCCCcceeeecCCCceEEeecCC
Confidence            6778899999999999999999999999999999987665  344444        677889999999999 89999999


Q ss_pred             CCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeecc
Q 004581          201 GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT  280 (744)
Q Consensus       201 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  280 (744)
                      +.+++|++...+...++.+|...|+++.|......+++|+.|.+|++||+.....                 ..+. ...
T Consensus       241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-----------------~kt~-l~~  302 (459)
T KOG0288|consen  241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-----------------SKTV-LPG  302 (459)
T ss_pred             Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-----------------eccc-ccc
Confidence            9999999999999999999999999999998777799999999999999988552                 2221 122


Q ss_pred             CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581          281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV  360 (744)
Q Consensus       281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  360 (744)
                      ..+..++..                                   ...+++|..|++|++||.+...              
T Consensus       303 S~cnDI~~~-----------------------------------~~~~~SgH~DkkvRfwD~Rs~~--------------  333 (459)
T KOG0288|consen  303 SQCNDIVCS-----------------------------------ISDVISGHFDKKVRFWDIRSAD--------------  333 (459)
T ss_pred             ccccceEec-----------------------------------ceeeeecccccceEEEeccCCc--------------
Confidence            223333331                                   1278899999999999987532              


Q ss_pred             ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCC
Q 004581          361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHV  439 (744)
Q Consensus       361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~  439 (744)
                                                                      +...+..  .+.|+++..+++|..|.+ +.|.
T Consensus       334 ------------------------------------------------~~~sv~~--gg~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  334 ------------------------------------------------KTRSVPL--GGRVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             ------------------------------------------------eeeEeec--CcceeeEeeccCCeEEeeecCCC
Confidence                                                            1222222  258999999999966555 6899


Q ss_pred             ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581          440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS  519 (744)
Q Consensus       440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  519 (744)
                      .+.++++... .....+....   .......+.+.|||++.|+++|+.||.|+||++.++++...+...          +
T Consensus       364 tl~viDlRt~-eI~~~~sA~g---~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s----------~  429 (459)
T KOG0288|consen  364 TLKVIDLRTK-EIRQTFSAEG---FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS----------T  429 (459)
T ss_pred             ceeeeecccc-cEEEEeeccc---cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC----------C
Confidence            9999998761 1112211111   111225889999999999999999999999999999999888873          2


Q ss_pred             CC-ceEEEEECCCCCEEEEEeCCCcEEEE
Q 004581          520 EP-PITKMFTSSDGQWLAAVNCFGDVYIF  547 (744)
Q Consensus       520 ~~-~i~~l~~spdg~~las~~~dg~i~iw  547 (744)
                      .. .|++++|+|.|.+|++++.++.+.+|
T Consensus       430 s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  430 SNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcceEEEEEcCCCchhhcccCCcceEec
Confidence            22 69999999999999999999999998

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.8e-28  Score=249.64  Aligned_cols=226  Identities=23%  Similarity=0.316  Sum_probs=204.0

Q ss_pred             CCCeeEEecCCCeEEEEEccCCceeEE-eeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDLKQKIV-LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN   82 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (744)
                      .++++++++.+++|.+||..++..+.. +.+|.+.|++++|..-+                                   
T Consensus       217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-----------------------------------  261 (537)
T KOG0274|consen  217 HDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-----------------------------------  261 (537)
T ss_pred             ecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-----------------------------------
Confidence            367899999999999999999999998 99999999999998733                                   


Q ss_pred             CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581           83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG  162 (744)
Q Consensus        83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~  162 (744)
                                     .+|++|+.|.++++||..++++.   ..+.+|.+.|.++...  +..+++|+.|.+|++|+++++
T Consensus       262 ---------------~~lvsgS~D~t~rvWd~~sg~C~---~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~  321 (537)
T KOG0274|consen  262 ---------------DKLVSGSTDKTERVWDCSTGECT---HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG  321 (537)
T ss_pred             ---------------CEEEEEecCCcEEeEecCCCcEE---EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc
Confidence                           58999999999999999989888   8999999999998874  567888999999999999999


Q ss_pred             ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581          163 YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD  242 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d  242 (744)
                      ..+..+.        +|..+|.++... .+.+++|+.|++|++||+.+++++.++++|...|.++.+... +.+++|+.|
T Consensus       322 ~~l~l~~--------~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D  391 (537)
T KOG0274|consen  322 ACLNLLR--------GHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD  391 (537)
T ss_pred             ceEEEec--------cccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence            9999997        699999999998 559999999999999999999999999999999999988765 789999999


Q ss_pred             CeEEEEEcccC-cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581          243 GQVILYKASCE-SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       243 g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      ++|++||+.+. +                 ++..+.+|..-+..+.+.                                
T Consensus       392 ~~IkvWdl~~~~~-----------------c~~tl~~h~~~v~~l~~~--------------------------------  422 (537)
T KOG0274|consen  392 TTIKVWDLRTKRK-----------------CIHTLQGHTSLVSSLLLR--------------------------------  422 (537)
T ss_pred             cceEeecCCchhh-----------------hhhhhcCCcccccccccc--------------------------------
Confidence            99999999987 4                 477888999888777652                                


Q ss_pred             cCCCcEEEEecCCCeEEEEecCccC
Q 004581          322 HLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       322 ~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                         ...|++++.|+.|++||..+..
T Consensus       423 ---~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  423 ---DNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             ---cceeEeccccccEEEeecccCc
Confidence               2389999999999999987644

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-28  Score=215.71  Aligned_cols=315  Identities=19%  Similarity=0.267  Sum_probs=247.7

Q ss_pred             eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581            7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS   86 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (744)
                      ++++.-.++++.      .++.+.|.||...||.++.....                                       
T Consensus       126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tq---------------------------------------  160 (481)
T KOG0300|consen  126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQ---------------------------------------  160 (481)
T ss_pred             hheeeecCCcee------EeehhhhcccccceeeehhhcCC---------------------------------------
Confidence            445555555422      24566789999999999987765                                       


Q ss_pred             ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc------c
Q 004581           87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA------K  160 (744)
Q Consensus        87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~------~  160 (744)
                                 ..+.+++.|.+-+||.++++.++   ..+.||.+.|+++.|++.+.++++++.|++..||..      .
T Consensus       161 -----------pi~gtASADhTA~iWs~Esg~CL---~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP  226 (481)
T KOG0300|consen  161 -----------PICGTASADHTARIWSLESGACL---ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVP  226 (481)
T ss_pred             -----------cceeecccccceeEEeeccccce---eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCC
Confidence                       58899999999999999999998   889999999999999999999999999999999962      1


Q ss_pred             C--------Cce-------------------EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcc
Q 004581          161 L--------GYE-------------------IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT  212 (744)
Q Consensus       161 ~--------~~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~  212 (744)
                      .        ++.                   -.+++.+... ..+|...|.+..|...| ++++++.|.+..+||+++|.
T Consensus       227 ~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge  305 (481)
T KOG0300|consen  227 SNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE  305 (481)
T ss_pred             CCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence            0        000                   0011111111 23789999999999888 99999999999999999999


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581          213 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI  292 (744)
Q Consensus       213 ~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  292 (744)
                      .+..+.+|....+.++-+|..+++++++.|.+.++||++..-.                .+..+++|+..|++..|.   
T Consensus       306 ~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~----------------sV~VFQGHtdtVTS~vF~---  366 (481)
T KOG0300|consen  306 VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ----------------SVAVFQGHTDTVTSVVFN---  366 (481)
T ss_pred             eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc----------------eeeeecccccceeEEEEe---
Confidence            9999999999999999999999999999999999999985432                267889999999999996   


Q ss_pred             CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581          293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH  372 (744)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  372 (744)
                            .+                         ..+++|+.|.+|++||++++...                        
T Consensus       367 ------~d-------------------------d~vVSgSDDrTvKvWdLrNMRsp------------------------  391 (481)
T KOG0300|consen  367 ------TD-------------------------DRVVSGSDDRTVKVWDLRNMRSP------------------------  391 (481)
T ss_pred             ------cC-------------------------CceeecCCCceEEEeeeccccCc------------------------
Confidence                  22                         27999999999999999875421                        


Q ss_pred             CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCC
Q 004581          373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKV  451 (744)
Q Consensus       373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~  451 (744)
                                                           +..+..  ...+..++++..+..||.- ++..|++|+++.   
T Consensus       392 -------------------------------------lATIRt--dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG---  429 (481)
T KOG0300|consen  392 -------------------------------------LATIRT--DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG---  429 (481)
T ss_pred             -------------------------------------ceeeec--CCccceeEeecCCceEEeccCCceEEEEecCC---
Confidence                                                 111111  2567778888888899985 788999999964   


Q ss_pred             CCceEEeeeccCCcccccccEEEEeeCC--CEEEEEeCCCcEEEEEccC
Q 004581          452 GQGEWIINKRQLPRKLQFAHSMIFSYDS--SQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~i~~spd~--~~l~~~~~dg~i~v~d~~~  498 (744)
                       ..+-.+....-.+|...++|++|..+-  .-|++++-|..+.-|.+..
T Consensus       430 -~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  430 -NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             -CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence             343334444556777789999996543  3567888899999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=4.7e-28  Score=250.01  Aligned_cols=280  Identities=19%  Similarity=0.211  Sum_probs=208.4

Q ss_pred             CeEEEEe--cCCeEEEEEecC--------CC-ceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-----
Q 004581           98 RRVALAC--DDGCVRIYRITD--------SD-ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-----  161 (744)
Q Consensus        98 ~~la~~~--~dg~i~iwd~~~--------~~-~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~-----  161 (744)
                      ..+|+|+  .|+.++||+...        .. ..........|.+.|+|+.|+|||++||+|++|+.|.||....     
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~  105 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT  105 (942)
T ss_pred             eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence            5899999  899999998751        01 1122245668999999999999999999999999999999762     


Q ss_pred             -------------CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEE
Q 004581          162 -------------GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNAL  227 (744)
Q Consensus       162 -------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l  227 (744)
                                   .++...+.        +|...|..++|+|++ +|++++.|++|.+||..+.+.+..+.+|.+.|..+
T Consensus       106 ~fgs~g~~~~vE~wk~~~~l~--------~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGv  177 (942)
T KOG0973|consen  106 VFGSTGGAKNVESWKVVSILR--------GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGV  177 (942)
T ss_pred             cccccccccccceeeEEEEEe--------cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccce
Confidence                         11344444        799999999999999 99999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccC
Q 004581          228 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR  307 (744)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~  307 (744)
                      .|.|-|++|++-+.|++|++|+...                 |.....+..+...+                        
T Consensus       178 s~DP~Gky~ASqsdDrtikvwrt~d-----------------w~i~k~It~pf~~~------------------------  216 (942)
T KOG0973|consen  178 SWDPIGKYFASQSDDRTLKVWRTSD-----------------WGIEKSITKPFEES------------------------  216 (942)
T ss_pred             EECCccCeeeeecCCceEEEEEccc-----------------ceeeEeeccchhhC------------------------
Confidence            9999999999999999999999554                 11111111111000                        


Q ss_pred             CCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEE
Q 004581          308 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDIL  387 (744)
Q Consensus       308 ~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~  387 (744)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (942)
T KOG0973|consen  217 --------------------------------------------------------------------------------  216 (942)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cC---CceEEEEeecCCCCCceEEeeecc
Q 004581          388 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DH---VKPSLFELKKGKVGQGEWIINKRQ  462 (744)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~---~~v~l~~~~~~~~~~~~~~~~~~~  462 (744)
                                                  ........+.|||||++|++.  ..   ..+.|.+-.       .|... ..
T Consensus       217 ----------------------------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-------tWk~~-~~  260 (942)
T KOG0973|consen  217 ----------------------------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-------TWKVD-KD  260 (942)
T ss_pred             ----------------------------CCcceeeecccCCCcCeecchhhccCCcceeEEEecC-------Cceee-ee
Confidence                                        000122333455555555551  11   223333221       24333 56


Q ss_pred             CCcccccccEEEEeeC-----CC------------EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581          463 LPRKLQFAHSMIFSYD-----SS------------QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK  525 (744)
Q Consensus       463 ~~~~~~~v~~i~~spd-----~~------------~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  525 (744)
                      +.+|..++.++.|+|-     .+            .+|+|+.|++|.||.....+++.....-          ....|..
T Consensus       261 LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l----------f~~SI~D  330 (942)
T KOG0973|consen  261 LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL----------FNKSIVD  330 (942)
T ss_pred             eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh----------hcCceee
Confidence            7788888999999761     11            5788999999999998777766554432          4678999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCc
Q 004581          526 MFTSSDGQWLAAVNCFGDVYIFNLEIQ  552 (744)
Q Consensus       526 l~~spdg~~las~~~dg~i~iwd~~~~  552 (744)
                      ++|||||-.|.++|.||+|.++.++..
T Consensus       331 msWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  331 MSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             eeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            999999999999999999999999643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.4e-28  Score=244.57  Aligned_cols=298  Identities=19%  Similarity=0.236  Sum_probs=211.9

Q ss_pred             ceeEEee-ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581           26 KQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        26 ~~~~~~~-~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      ...+.++ .|.+.||+|.||+||                                                  ++||+||
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DG--------------------------------------------------KyLAsaG  286 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDG--------------------------------------------------KYLASAG  286 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCC--------------------------------------------------ceeeecC
Confidence            3444566 899999999999999                                                  6999999


Q ss_pred             cCCeEEEEEecCCCceeEeecccCccCcEEEE-------------EEec---CCC--EEEEEeCCCeEEEEEcc----CC
Q 004581          105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSV-------------TWSA---DGN--MLYSGSSDGYIRSWDAK----LG  162 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~-------------~~s~---dg~--~l~t~~~dg~i~vwd~~----~~  162 (744)
                      .|+.|+||.+...+...      .+.+.-.++             .-++   .++  ..-.+..... .+.+..    ..
T Consensus       287 eD~virVWkVie~e~~~------~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~-~~~p~~~f~f~e  359 (712)
T KOG0283|consen  287 EDGVIRVWKVIESERMR------VAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC-VLLPLKAFVFSE  359 (712)
T ss_pred             CCceEEEEEEeccchhc------ccccccchhhhhhhhccccCccccccccccccccccccccCCcc-ccCCCccccccc
Confidence            99999999997433211      111111111             1111   011  1112222222 122211    12


Q ss_pred             ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecC
Q 004581          163 YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGS  241 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~  241 (744)
                      ++++.+.        +|...|..+.|+.+++|++++.|.+|++|++...++++.|. |..-|+|++|+| |.+++++|+.
T Consensus       360 kP~~ef~--------GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  360 KPFCEFK--------GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             cchhhhh--------ccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccc
Confidence            3444454        89999999999999999999999999999999999999987 899999999999 6789999999


Q ss_pred             CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581          242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      ||.|+||++...+                  +.....-..-|+++++.         |||+                   
T Consensus       431 D~KvRiWsI~d~~------------------Vv~W~Dl~~lITAvcy~---------PdGk-------------------  464 (712)
T KOG0283|consen  431 DGKVRLWSISDKK------------------VVDWNDLRDLITAVCYS---------PDGK-------------------  464 (712)
T ss_pred             ccceEEeecCcCe------------------eEeehhhhhhheeEEec---------cCCc-------------------
Confidence            9999999999876                  33333334779999997         7776                   


Q ss_pred             cCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCC
Q 004581          322 HLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSS  401 (744)
Q Consensus       322 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~  401 (744)
                           ..+.|+.+|.+++|+....+...                                                    
T Consensus       465 -----~avIGt~~G~C~fY~t~~lk~~~----------------------------------------------------  487 (712)
T KOG0283|consen  465 -----GAVIGTFNGYCRFYDTEGLKLVS----------------------------------------------------  487 (712)
T ss_pred             -----eEEEEEeccEEEEEEccCCeEEE----------------------------------------------------
Confidence                 89999999999999887532100                                                    


Q ss_pred             CCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC-CC
Q 004581          402 GGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SS  480 (744)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~  480 (744)
                                ...      |   ...                       .+        +...+ . .|+.+.|.|. ..
T Consensus       488 ----------~~~------I---~~~-----------------------~~--------Kk~~~-~-rITG~Q~~p~~~~  515 (712)
T KOG0283|consen  488 ----------DFH------I---RLH-----------------------NK--------KKKQG-K-RITGLQFFPGDPD  515 (712)
T ss_pred             ----------eee------E---eec-----------------------cC--------ccccC-c-eeeeeEecCCCCC
Confidence                      000      0   000                       00        11111 1 6788888763 34


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581          481 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR  553 (744)
Q Consensus       481 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~  553 (744)
                      .|++.+.|..|+|||..+.+++..|++...         ...-....|+.||++|++++.|..|+||+++...
T Consensus       516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n---------~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRN---------TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             eEEEecCCCceEEEeccchhhhhhhccccc---------CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            677788899999999988899999998532         2333556899999999999999999999987554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1e-27  Score=223.50  Aligned_cols=289  Identities=17%  Similarity=0.184  Sum_probs=233.3

Q ss_pred             eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581           28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG  107 (744)
Q Consensus        28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg  107 (744)
                      ...+..|.-+|.||+++|+.                                                  .+..+++.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~--------------------------------------------------~~~fsask~g  164 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDD--------------------------------------------------KRVFSASKDG  164 (479)
T ss_pred             ceeeccccCcceEEEeeccc--------------------------------------------------cceeecCCCc
Confidence            45677899999999999999                                                  5888999999


Q ss_pred             eEEEEEecCCCceeEee--------------cc-cCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581          108 CVRIYRITDSDELIYHR--------------SL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL  172 (744)
Q Consensus       108 ~i~iwd~~~~~~~~~~~--------------~~-~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~  172 (744)
                      +|.=|++.++....+..              .- .+|...|.+++.|+||++||+|+.|..|.||+.++.+.++.++   
T Consensus       165 ~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~---  241 (479)
T KOG0299|consen  165 TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK---  241 (479)
T ss_pred             ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc---
Confidence            99999998766431111              11 3788899999999999999999999999999999999999988   


Q ss_pred             CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581          173 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       173 ~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                           +|...|.+++|-..- .+++++.|+.|++|+++....+.++.+|...|..|....-++.+-+|+.|+++++|++.
T Consensus       242 -----ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~  316 (479)
T KOG0299|consen  242 -----GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP  316 (479)
T ss_pred             -----ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc
Confidence                 899999999998766 89999999999999999999999999999999999999888877778899999999996


Q ss_pred             cCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEe
Q 004581          252 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA  331 (744)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~  331 (744)
                      ...                  .-.+++|...+.|++|-                                  +...+++|
T Consensus       317 ees------------------qlifrg~~~sidcv~~I----------------------------------n~~HfvsG  344 (479)
T KOG0299|consen  317 EES------------------QLIFRGGEGSIDCVAFI----------------------------------NDEHFVSG  344 (479)
T ss_pred             ccc------------------eeeeeCCCCCeeeEEEe----------------------------------cccceeec
Confidence            654                  34567888899999984                                  22389999


Q ss_pred             cCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEE
Q 004581          332 GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLV  411 (744)
Q Consensus       332 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  411 (744)
                      +.+|.|.+|++...+.+-                                                              
T Consensus       345 SdnG~IaLWs~~KKkplf--------------------------------------------------------------  362 (479)
T KOG0299|consen  345 SDNGSIALWSLLKKKPLF--------------------------------------------------------------  362 (479)
T ss_pred             cCCceEEEeeecccCcee--------------------------------------------------------------
Confidence            999999999987643211                                                              


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcE
Q 004581          412 QVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI  491 (744)
Q Consensus       412 ~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i  491 (744)
                      ....+|.       +.|+.                               ....+...|++++..|...++|+|+.+|.|
T Consensus       363 ~~~~AHg-------v~~~~-------------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~v  404 (479)
T KOG0299|consen  363 TSRLAHG-------VIPEL-------------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCV  404 (479)
T ss_pred             Eeecccc-------ccCCc-------------------------------cccccccceeeeEecccCceEEecCCCCce
Confidence            1111110       00000                               000111388999999999999999999999


Q ss_pred             EEEEccCC----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581          492 YVVDVSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV  538 (744)
Q Consensus       492 ~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~  538 (744)
                      ++|.+.++    +++..+.            ..+-|++++|+++|++|++|
T Consensus       405 rLW~i~~g~r~i~~l~~ls------------~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  405 RLWKIEDGLRAINLLYSLS------------LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             EEEEecCCccccceeeecc------------cccEEEEEEEccCCCEEEEe
Confidence            99999877    4455555            47889999999999977666

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=6.9e-27  Score=225.73  Aligned_cols=169  Identities=16%  Similarity=0.163  Sum_probs=133.1

Q ss_pred             CCeEEEEEcC-CCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee-CCCEEEEEeCCCcEEEEE
Q 004581          419 RKIICSTISN-SGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       419 ~~i~~~~~s~-~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d  495 (744)
                      ..|+.+.|.| |...||+ +.++.|++|++..++. ...-......+..|...|+++.|+| -...|++++.|-+|++||
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCC-CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            5688888988 4466777 6999999999987332 2222233466778888999999999 567889999999999999


Q ss_pred             ccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE-EEEecCCCCceeEEeecCC
Q 004581          496 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQ  574 (744)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~  574 (744)
                      +.+++....|.+           |.+.|..++|||||+.+|+.+.||+|+||+-.+.+.. ..-++.-+..--.+.|.- 
T Consensus       707 l~~~~~~~~l~g-----------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-  774 (1012)
T KOG1445|consen  707 LANAKLYSRLVG-----------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-  774 (1012)
T ss_pred             hhhhhhhheecc-----------CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-
Confidence            999999999998           9999999999999999999999999999998776543 222222233445677888 


Q ss_pred             CCCeEEEEecCC----eEEEEEcCCCcccc
Q 004581          575 NNNVLIITTSSN----QVYVFDVEAKQLGE  600 (744)
Q Consensus       575 ~~~~l~~~~~d~----~v~vwd~~~~~~~~  600 (744)
                      ||+++++.+-|.    +|.+||.++-.+.+
T Consensus       775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p  804 (1012)
T KOG1445|consen  775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRP  804 (1012)
T ss_pred             cCcEEEEecccccchhhhhhhhhhhccCCc
Confidence            999999887664    88899987665433

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-27  Score=205.70  Aligned_cols=226  Identities=20%  Similarity=0.285  Sum_probs=189.9

Q ss_pred             cCCCeEEEEEccCCceeEEeec--cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccc
Q 004581           12 SIDGSVSEWDLYDLKQKIVLQS--IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL   89 (744)
Q Consensus        12 ~~d~~i~iwd~~~~~~~~~~~~--h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (744)
                      ...|.+.|-++...+-+..+..  -...+..++|+++..                                         
T Consensus        35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e-----------------------------------------   73 (311)
T KOG0277|consen   35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE-----------------------------------------   73 (311)
T ss_pred             ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc-----------------------------------------
Confidence            3578999999875555554443  357899999999874                                         


Q ss_pred             cccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccCCceEEEE
Q 004581           90 HEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYEIYRI  168 (744)
Q Consensus        90 ~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~  168 (744)
                              +.+++++.||+++|||..-.  -.+++.++.|...|.++.|++- ++.+++++.|++|++|+...+..+.++
T Consensus        74 --------~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf  143 (311)
T KOG0277|consen   74 --------NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF  143 (311)
T ss_pred             --------ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence                    57889999999999997522  2244899999999999999984 557788899999999999999999998


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeE
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQV  245 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i  245 (744)
                      .        +|...|+...|+|..  .+++++.|+++++||++.......+..|...|+|+.|+. +.+.|+||+.|+.|
T Consensus       144 ~--------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  144 N--------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             c--------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence            8        899999999999976  899999999999999987444445999999999999997 55788899999999


Q ss_pred             EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581          246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV  325 (744)
Q Consensus       246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  325 (744)
                      +.||++.-..                ++..+.+|.-.|+.++++         |..                       .
T Consensus       216 r~wDir~~r~----------------pl~eL~gh~~AVRkvk~S---------ph~-----------------------~  247 (311)
T KOG0277|consen  216 RGWDIRNLRT----------------PLFELNGHGLAVRKVKFS---------PHH-----------------------A  247 (311)
T ss_pred             EEEehhhccc----------------cceeecCCceEEEEEecC---------cch-----------------------h
Confidence            9999998663                367789999999999997         332                       2


Q ss_pred             cEEEEecCCCeEEEEecCc
Q 004581          326 PMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       326 ~~l~s~~~d~~i~~~~~~~  344 (744)
                      .+|++++.|-++++||...
T Consensus       248 ~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  248 SLLASASYDMTVRIWDPER  266 (311)
T ss_pred             hHhhhccccceEEeccccc
Confidence            4899999999999999874

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.1e-26  Score=238.20  Aligned_cols=194  Identities=18%  Similarity=0.192  Sum_probs=161.8

Q ss_pred             CCCCeeEEecCCCeEEEEEccCCcee-------------EEeeccCcceeEEeecc-CCCccccccccccccCCccccCC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDLKQK-------------IVLQSIDFSIWQMAVAP-SNSSLMHAVTNSDHIGNGYLNDK   68 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~~~h~~~i~~v~~sp-~~~~~~~~~~~~~~~~~~~~~~~   68 (744)
                      +++..+++++.+..+..|+...+..+             ..+.+|.+.|.+++|+| ++                     
T Consensus        30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~---------------------   88 (493)
T PTZ00421         30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP---------------------   88 (493)
T ss_pred             CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC---------------------
Confidence            45577888888888888876443322             24778999999999999 66                     


Q ss_pred             CCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCc----eeEeecccCccCcEEEEEEecCC-C
Q 004581           69 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE----LIYHRSLPRVSGRVLSVTWSADG-N  143 (744)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~V~~~~~s~dg-~  143 (744)
                                                   ++||+|+.|++|+|||+.++..    ......+.+|...|.+++|+|++ +
T Consensus        89 -----------------------------~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~  139 (493)
T PTZ00421         89 -----------------------------QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN  139 (493)
T ss_pred             -----------------------------CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC
Confidence                                         5899999999999999975421    11236788999999999999986 6


Q ss_pred             EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeecccc
Q 004581          144 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKG  222 (744)
Q Consensus       144 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~  222 (744)
                      +|++++.|++|+|||+++++.+..+.        .|...|.+++|+|++ .|++++.|+.|++||+++++.+.++.+|.+
T Consensus       140 iLaSgs~DgtVrIWDl~tg~~~~~l~--------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~  211 (493)
T PTZ00421        140 VLASAGADMVVNVWDVERGKAVEVIK--------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS  211 (493)
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEc--------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence            99999999999999999999888876        688899999999999 899999999999999999999999999976


Q ss_pred             c-eeEEEEcCCCCEEEeec----CCCeEEEEEcccCc
Q 004581          223 D-VNALAAAPSHNRVFSTG----SDGQVILYKASCES  254 (744)
Q Consensus       223 ~-v~~l~~~~~~~~l~~~~----~dg~i~iw~~~~~~  254 (744)
                      . +..+.|.+++..+++++    .|+.|++||++...
T Consensus       212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            5 45678999888888754    47999999997643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3e-27  Score=222.98  Aligned_cols=304  Identities=13%  Similarity=0.106  Sum_probs=225.4

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS  202 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~  202 (744)
                      ..+.+|+..|.++++.|.|-.|++|+.|.+|++||+..........   ....-.....|.++.|++.| +|++.+....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f---r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSF---RQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhh---hccCcccccccceeeecCCCCeEEEEecCcc
Confidence            5677899999999999999999999999999999996533221111   01111456789999999999 8888888888


Q ss_pred             EEEEeCCCcceEE------------EeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccce
Q 004581          203 VQFWDSRHGTLLQ------------AHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKK  269 (744)
Q Consensus       203 i~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  269 (744)
                      .+++|-...+...            .-++|.+.++|.+|+|+. ..+++++.||++++|++......           .+
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-----------~q  306 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-----------LQ  306 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-----------ee
Confidence            9999976333322            236799999999999975 57889999999999999875420           00


Q ss_pred             EEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCC
Q 004581          270 WIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS  349 (744)
Q Consensus       270 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~  349 (744)
                      -.......+..-.+...+|+         +|++                        .|++|..||+|.+|+......- 
T Consensus       307 Vik~k~~~g~Rv~~tsC~~n---------rdg~------------------------~iAagc~DGSIQ~W~~~~~~v~-  352 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWN---------RDGK------------------------LIAAGCLDGSIQIWDKGSRTVR-  352 (641)
T ss_pred             EEeeccCCCcccCceeeecC---------CCcc------------------------hhhhcccCCceeeeecCCcccc-
Confidence            11111122334456777776         6665                        8999999999999997542210 


Q ss_pred             CcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCC--CCeEEEEEc
Q 004581          350 PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKAS--RKIICSTIS  427 (744)
Q Consensus       350 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s  427 (744)
                                                                                 ....+...|.  ..|+|++||
T Consensus       353 -----------------------------------------------------------p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  353 -----------------------------------------------------------PVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             -----------------------------------------------------------cceEeeeccCCCCceeEEEec
Confidence                                                                       1122233333  489999999


Q ss_pred             CCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC------CCcEEEEEccCCc
Q 004581          428 NSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH------DRRIYVVDVSSSE  500 (744)
Q Consensus       428 ~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~------dg~i~v~d~~~~~  500 (744)
                      +||++|++ |.|+++++|+++........|    ..++. .-+-+.++||||.++|++|..      .|.+.+||..+.+
T Consensus       374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~----tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d  448 (641)
T KOG0772|consen  374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVR----TGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD  448 (641)
T ss_pred             cccchhhhccCCCceeeeeccccccchhhh----cCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence            99999999 899999999998743333321    11222 125678899999999999853      4689999999999


Q ss_pred             eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      .++.+.-           ....|..+.|+|.=+.|.+++.||.++||--.
T Consensus       449 ~v~ki~i-----------~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  449 TVYKIDI-----------STASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             eEEEecC-----------CCceEEEEeecchhhheeeecCCCceEEEECc
Confidence            9888887           57889999999999999999999999987543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.4e-27  Score=210.72  Aligned_cols=299  Identities=13%  Similarity=0.166  Sum_probs=238.1

Q ss_pred             EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCe
Q 004581           29 IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGC  108 (744)
Q Consensus        29 ~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~  108 (744)
                      ..+..|..++.+.+|||||                                                  .++|+|+.|-.
T Consensus       106 ~ylt~HK~~cR~aafs~DG--------------------------------------------------~lvATGsaD~S  135 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDG--------------------------------------------------SLVATGSADAS  135 (430)
T ss_pred             EEEeecccceeeeeeCCCC--------------------------------------------------cEEEccCCcce
Confidence            3577899999999999999                                                  69999999999


Q ss_pred             EEEEEecC------------C---CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCC
Q 004581          109 VRIYRITD------------S---DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG  173 (744)
Q Consensus       109 i~iwd~~~------------~---~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~  173 (744)
                      |+|.|++.            +   ..-..+++|..|...|+++.|+|-...|++|+.|++|+++|+..-...+.++.-  
T Consensus       136 IKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~--  213 (430)
T KOG0640|consen  136 IKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF--  213 (430)
T ss_pred             EEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--
Confidence            99999861            1   111345888899999999999999999999999999999998654433333211  


Q ss_pred             CCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe---eccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          174 GLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH---SFHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       174 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                          ....+|.++.|+|.| .|+.|....++++||+++.++...-   ..|.+.|+++.+++.+++.++|+.||.|++||
T Consensus       214 ----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  214 ----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             ----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence                356789999999999 8999999999999999998876543   46889999999999999999999999999998


Q ss_pred             cccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581          250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI  329 (744)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~  329 (744)
                      --++..                           |+.+                                           
T Consensus       290 GVS~rC---------------------------v~t~-------------------------------------------  299 (430)
T KOG0640|consen  290 GVSNRC---------------------------VRTI-------------------------------------------  299 (430)
T ss_pred             cccHHH---------------------------HHHH-------------------------------------------
Confidence            544320                           0000                                           


Q ss_pred             EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581          330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL  409 (744)
Q Consensus       330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  409 (744)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (430)
T KOG0640|consen  300 --------------------------------------------------------------------------------  299 (430)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC
Q 004581          410 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR  489 (744)
Q Consensus       410 ~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg  489 (744)
                          ...|                                                ....|++..|+.+|+|+++.+.|.
T Consensus       300 ----~~AH------------------------------------------------~gsevcSa~Ftkn~kyiLsSG~DS  327 (430)
T KOG0640|consen  300 ----GNAH------------------------------------------------GGSEVCSAVFTKNGKYILSSGKDS  327 (430)
T ss_pred             ----Hhhc------------------------------------------------CCceeeeEEEccCCeEEeecCCcc
Confidence                0000                                                011577788999999999999999


Q ss_pred             cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-CCcEEEEECCCcceEEEEecCCCCceeE
Q 004581          490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISRLEGASVTA  568 (744)
Q Consensus       490 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~  568 (744)
                      .+++|++.+++.+.++.+....      +-...-+...|+....|++.-+. .+.+.-||..+......+...|++.++.
T Consensus       328 ~vkLWEi~t~R~l~~YtGAg~t------grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~  401 (430)
T KOG0640|consen  328 TVKLWEISTGRMLKEYTGAGTT------GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW  401 (430)
T ss_pred             eeeeeeecCCceEEEEecCCcc------cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence            9999999999999998873210      01222345567777778777664 5679999999998887888889999999


Q ss_pred             EeecCCCCCeEEEEecCCeEEEEE
Q 004581          569 AGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       569 l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                      +.-|| .+.-+++++.|..+++|-
T Consensus       402 i~HSP-~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  402 IVHSP-VEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             EEeCC-CCCceeeecccceeeeee
Confidence            99999 999999999999999995

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6e-27  Score=229.82  Aligned_cols=184  Identities=22%  Similarity=0.304  Sum_probs=159.5

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      +.||+| ....|.+|+..+++.......+.+.|+++.|+++|                                      
T Consensus       189 n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G--------------------------------------  229 (484)
T KOG0305|consen  189 NVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG--------------------------------------  229 (484)
T ss_pred             CeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCC--------------------------------------
Confidence            345554 45689999999999888777778999999999999                                      


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccC-ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR-VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE  164 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~  164 (744)
                                  .+||+|..+|.|.|||....+.+   +.+.+ |...|-+++|+  +..+.+|+.|+.|..+|+...+.
T Consensus       230 ------------~~LavG~~~g~v~iwD~~~~k~~---~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  230 ------------SHLAVGTSDGTVQIWDVKEQKKT---RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             ------------CEEEEeecCCeEEEEehhhcccc---ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence                        69999999999999999877766   77777 99999999998  67899999999999999998776


Q ss_pred             EEE-EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC-CCEEEeec-
Q 004581          165 IYR-ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS-HNRVFSTG-  240 (744)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~~~~-  240 (744)
                      ... +.        +|...|..+.|++|+ ++++|+.|+.+.|||.....++..+..|.+.|..++|+|- ...||+|+ 
T Consensus       293 ~~~~~~--------~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG  364 (484)
T KOG0305|consen  293 VVSTLQ--------GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG  364 (484)
T ss_pred             hhhhhh--------cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence            665 33        799999999999999 9999999999999999888899999999999999999994 45777754 


Q ss_pred             -CCCeEEEEEcccC
Q 004581          241 -SDGQVILYKASCE  253 (744)
Q Consensus       241 -~dg~i~iw~~~~~  253 (744)
                       .|+.|++||..++
T Consensus       365 s~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  365 SADRCIKFWNTNTG  378 (484)
T ss_pred             CcccEEEEEEcCCC
Confidence             3777888876653

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.1e-26  Score=238.75  Aligned_cols=184  Identities=18%  Similarity=0.242  Sum_probs=155.3

Q ss_pred             ecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581           11 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH   90 (744)
Q Consensus        11 ~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (744)
                      |+.++.|.+|+......+..+.+|.+.|.+++|+|+..                                          
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~------------------------------------------   87 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFS------------------------------------------   87 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCC------------------------------------------
Confidence            56688999999888888889999999999999999731                                          


Q ss_pred             ccccccCCeEEEEecCCeEEEEEecCCCc-e----eEeecccCccCcEEEEEEecCCCE-EEEEeCCCeEEEEEccCCce
Q 004581           91 EQSVVEDRRVALACDDGCVRIYRITDSDE-L----IYHRSLPRVSGRVLSVTWSADGNM-LYSGSSDGYIRSWDAKLGYE  164 (744)
Q Consensus        91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~-~----~~~~~~~~h~~~V~~~~~s~dg~~-l~t~~~dg~i~vwd~~~~~~  164 (744)
                             .+||+|+.|+.|+|||+.++.. .    .....+.+|...|.+++|+|++.. |++++.|++|++||+.+++.
T Consensus        88 -------~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~  160 (568)
T PTZ00420         88 -------EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR  160 (568)
T ss_pred             -------CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE
Confidence                   5899999999999999975432 1    122467899999999999999875 57899999999999999987


Q ss_pred             EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEE-----EEcCCCCEEEe
Q 004581          165 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNAL-----AAAPSHNRVFS  238 (744)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l-----~~~~~~~~l~~  238 (744)
                      +..+.         +...|.+++|+++| .|++++.|+.|+|||+++++.+.++.+|.+.+.+.     .|++++.+|++
T Consensus       161 ~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlT  231 (568)
T PTZ00420        161 AFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILS  231 (568)
T ss_pred             EEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEE
Confidence            77664         45679999999999 78888899999999999999999999998765433     34688899999


Q ss_pred             ecCCC----eEEEEEccc
Q 004581          239 TGSDG----QVILYKASC  252 (744)
Q Consensus       239 ~~~dg----~i~iw~~~~  252 (744)
                      ++.|+    .|++||++.
T Consensus       232 tG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        232 TGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEcCCCCccEEEEEECCC
Confidence            88774    799999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-27  Score=239.24  Aligned_cols=305  Identities=15%  Similarity=0.193  Sum_probs=212.5

Q ss_pred             Eeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC-CCC--CCCCceeEEEEEEec---CC--
Q 004581          122 YHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL-GGL--GSGPELCIWSLLSLR---CG--  192 (744)
Q Consensus       122 ~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~--~~~~~~~v~~~~~~~---~~--  192 (744)
                      ..+.+. .|.+.|.++.||+||++||+||.|+.|+||.+..-+. ..+.... ...  .......+..+..++   .+  
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccccc
Confidence            345666 8999999999999999999999999999999865332 1111100 000  000000011111111   00  


Q ss_pred             -eEEEEcCCCCEEEEeCC----CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccccc
Q 004581          193 -TLVSADSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVI  267 (744)
Q Consensus       193 -~l~s~~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  267 (744)
                       ..-.+.....+. .+..    ..++++.+.+|.++|+.|.|+.++ +|++++.|.+|++|++....             
T Consensus       337 s~~~~~~~s~~~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~-------------  401 (712)
T KOG0283|consen  337 SSSRKGSQSPCVL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE-------------  401 (712)
T ss_pred             cccccccCCcccc-CCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcc-------------
Confidence             111122222222 2221    156788999999999999999765 89999999999999999876             


Q ss_pred             ceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581          268 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK  347 (744)
Q Consensus       268 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~  347 (744)
                           .-....|..-|+|++|.|        -|                        ..++++|+.|+.+++|++...+ 
T Consensus       402 -----CL~~F~HndfVTcVaFnP--------vD------------------------DryFiSGSLD~KvRiWsI~d~~-  443 (712)
T KOG0283|consen  402 -----CLKVFSHNDFVTCVAFNP--------VD------------------------DRYFISGSLDGKVRLWSISDKK-  443 (712)
T ss_pred             -----eeeEEecCCeeEEEEecc--------cC------------------------CCcEeecccccceEEeecCcCe-
Confidence                 234458999999999973        22                        2499999999999999886411 


Q ss_pred             CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 004581          348 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS  427 (744)
Q Consensus       348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  427 (744)
                                                          +                                           
T Consensus       444 ------------------------------------V-------------------------------------------  444 (712)
T KOG0283|consen  444 ------------------------------------V-------------------------------------------  444 (712)
T ss_pred             ------------------------------------e-------------------------------------------
Confidence                                                0                                           


Q ss_pred             CCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581          428 NSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       428 ~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  507 (744)
                                                ..|    ..+.   .-|++++|+|||++.++|+.+|.+++|+....++...+.-
T Consensus       445 --------------------------v~W----~Dl~---~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  445 --------------------------VDW----NDLR---DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             --------------------------Eee----hhhh---hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence                                      001    1111   2688999999999999999999999999987776655443


Q ss_pred             CcccccccCCCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCcceEEEEecCCC-CceeEEeecCCCCCeEEEEecC
Q 004581          508 CREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSS  585 (744)
Q Consensus       508 ~~~~~~~~~~~~~~~i~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~~~~~d  585 (744)
                      ...  ..+...|. .|+.+.|.|... .+++.+.|..|+|||..+..++..+++++. ..-....|+. ||++++++++|
T Consensus       492 ~~~--~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seD  567 (712)
T KOG0283|consen  492 RLH--NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASED  567 (712)
T ss_pred             eec--cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecC
Confidence            111  11112234 899999987433 466667899999999988888888887765 3446678999 99999999999


Q ss_pred             CeEEEEEcCCC
Q 004581          586 NQVYVFDVEAK  596 (744)
Q Consensus       586 ~~v~vwd~~~~  596 (744)
                      ..|++|+...-
T Consensus       568 s~VYiW~~~~~  578 (712)
T KOG0283|consen  568 SWVYIWKNDSF  578 (712)
T ss_pred             ceEEEEeCCCC
Confidence            99999998544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.4e-27  Score=206.72  Aligned_cols=309  Identities=14%  Similarity=0.114  Sum_probs=223.3

Q ss_pred             EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581           30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV  109 (744)
Q Consensus        30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i  109 (744)
                      .|++|.+.|++|+|+.||                                                  .+||+++.|+.|
T Consensus        81 ~LKgH~~~vt~~~FsSdG--------------------------------------------------K~lat~~~Dr~I  110 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDG--------------------------------------------------KKLATISGDRSI  110 (420)
T ss_pred             hhhccCCceeeeEEcCCC--------------------------------------------------ceeEEEeCCceE
Confidence            578999999999999999                                                  589999999999


Q ss_pred             EEEEecCCCceeEeeccc--CccCcEEEEEEecCCCEEEEEeC-CCeEEEEEccC---CceEEE-EEecCCCCCCCCcee
Q 004581          110 RIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKL---GYEIYR-ITVGLGGLGSGPELC  182 (744)
Q Consensus       110 ~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~---~~~~~~-~~~~~~~~~~~~~~~  182 (744)
                      +||++.+-..... +.++  -.-+.-+.++|+||.+-++.... ..++++|.+..   |..... .....-.....|...
T Consensus       111 r~w~~~DF~~~eH-r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~  189 (420)
T KOG2096|consen  111 RLWDVRDFENKEH-RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD  189 (420)
T ss_pred             EEEecchhhhhhh-hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccc
Confidence            9999973221110 1111  01124578899999987666554 45799997643   221111 111111123356777


Q ss_pred             EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCC
Q 004581          183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL  261 (744)
Q Consensus       183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  261 (744)
                      +..+-...++ +|++++.|..|.+|+++ |+.++++......-+..+.+|+|+++++++..--|++|..--...+     
T Consensus       190 ~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-----  263 (420)
T KOG2096|consen  190 IINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-----  263 (420)
T ss_pred             eEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-----
Confidence            7777777677 89999999999999999 9999999887778888999999999999999999999987644321     


Q ss_pred             CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581          262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC  341 (744)
Q Consensus       262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~  341 (744)
                          ..+.-..+..+.+|...|..++|+         ++..                        .+++.+.||++++||
T Consensus       264 ----~fqev~rvf~LkGH~saV~~~aFs---------n~S~------------------------r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  264 ----TFQEVKRVFSLKGHQSAVLAAAFS---------NSST------------------------RAVTVSKDGKWRIWD  306 (420)
T ss_pred             ----chhhhhhhheeccchhheeeeeeC---------CCcc------------------------eeEEEecCCcEEEee
Confidence                112223466789999999999997         5544                        899999999999999


Q ss_pred             cCccCCCC----CcccCCCCCCCccccccceeecCCeEEEEEeCC-eEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581          342 ANEFTKFS----PHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC-RLDILSVRLENNVESRSSSGGHASTSLLVQVKSK  416 (744)
Q Consensus       342 ~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (744)
                      ..-.....    .....+.|..........++++|++..++...+ .++++.-..++               ..-.++..
T Consensus       307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~---------------~~~~~e~~  371 (420)
T KOG2096|consen  307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK---------------DYPELEDI  371 (420)
T ss_pred             ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc---------------cchhHHHh
Confidence            87422111    111122222222233448899999998887655 88888776644               33445566


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEEee
Q 004581          417 ASRKIICSTISNSGMLFAYSDHVKPSLFELK  447 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~  447 (744)
                      |...|.+++|+++|++++++.|..++++.-.
T Consensus       372 h~~~Is~is~~~~g~~~atcGdr~vrv~~nt  402 (420)
T KOG2096|consen  372 HSTTISSISYSSDGKYIATCGDRYVRVIRNT  402 (420)
T ss_pred             hcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence            7789999999999999999999999998743

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.7e-26  Score=203.56  Aligned_cols=278  Identities=17%  Similarity=0.211  Sum_probs=207.2

Q ss_pred             CccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEE
Q 004581          128 RVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQ  204 (744)
Q Consensus       128 ~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~  204 (744)
                      ..+..|.+|+||| ...+|+.++.||+||+|+++. |..+.+-.       ..|..+|.+++|+.|| .+++|+.|+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~WsddgskVf~g~~Dk~~k   97 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGSKVFSGGCDKQAK   97 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCceEEeeccCCceE
Confidence            4567899999999 555666889999999999987 45444332       2689999999999999 899999999999


Q ss_pred             EEeCCCcceEEEeeccccceeEEEEcCCCC--EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581          205 FWDSRHGTLLQAHSFHKGDVNALAAAPSHN--RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD  282 (744)
Q Consensus       205 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  282 (744)
                      +||+.++ .+..+..|.++|.++.|-+...  .|++|+-|.+|+.||.+....                 +..+ .....
T Consensus        98 ~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-----------------v~t~-~LPeR  158 (347)
T KOG0647|consen   98 LWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-----------------VATL-QLPER  158 (347)
T ss_pred             EEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-----------------eeee-eccce
Confidence            9999998 5667888999999999987665  899999999999999987552                 2221 22233


Q ss_pred             ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581          283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI  362 (744)
Q Consensus       283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  362 (744)
                      ++++.+                                   -.++++.+..++.|.+|++++.....             
T Consensus       159 vYa~Dv-----------------------------------~~pm~vVata~r~i~vynL~n~~te~-------------  190 (347)
T KOG0647|consen  159 VYAADV-----------------------------------LYPMAVVATAERHIAVYNLENPPTEF-------------  190 (347)
T ss_pred             eeehhc-----------------------------------cCceeEEEecCCcEEEEEcCCCcchh-------------
Confidence            444433                                   12378888889999999997533211             


Q ss_pred             ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCce
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKP  441 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v  441 (744)
                                                                      .++..+-...++|++..+|.+-.|. +-+|.+
T Consensus       191 ------------------------------------------------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv  222 (347)
T KOG0647|consen  191 ------------------------------------------------KRIESPLKWQTRCVACFQDKDGFALGSIEGRV  222 (347)
T ss_pred             ------------------------------------------------hhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence                                                            1111122355778888887766566 588888


Q ss_pred             EEEEeecCCCCCceEEeeecc----CCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCC
Q 004581          442 SLFELKKGKVGQGEWIINKRQ----LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ  517 (744)
Q Consensus       442 ~l~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~  517 (744)
                      .+..++.+.. ..-+.++-.+    .....-.|++|+|+|.-..|++++.||+..+||-+....+.+.+.          
T Consensus       223 ~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~----------  291 (347)
T KOG0647|consen  223 AIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET----------  291 (347)
T ss_pred             EEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc----------
Confidence            8888876322 2222222211    111233789999999999999999999999999877777777776          


Q ss_pred             CCCCceEEEEECCCCCEEEEEe
Q 004581          518 PSEPPITKMFTSSDGQWLAAVN  539 (744)
Q Consensus       518 ~~~~~i~~l~~spdg~~las~~  539 (744)
                       |..+|++.+|+.+|.++|.+.
T Consensus       292 -~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  292 -HPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             -CCCccceeEecCCCCEEEEEe
Confidence             899999999999999998764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2e-26  Score=212.91  Aligned_cols=271  Identities=18%  Similarity=0.244  Sum_probs=227.4

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ..+++|+.|..+.++|..+++.+   ..|.||...|+.+.|+|+...+++++.|-.|+||.+....+.....        
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l---~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~--------  300 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQIL---ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR--------  300 (506)
T ss_pred             CcceecCCCCceEEEecchhhhh---hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc--------
Confidence            58999999999999999977777   8999999999999999999999999999999999998777666665        


Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeecc--ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH--KGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      .|+.+|..+..+|.| +|++++.|++..+.|+++|.++......  .-.+++++|+|||..|.+|..||.|++||+..+.
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            699999999999999 9999999999999999999988776643  2358999999999999999999999999999876


Q ss_pred             CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581          255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD  334 (744)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d  334 (744)
                      .                 +..+.+|+.+|++++|+         .+|-                        +|++++.|
T Consensus       381 ~-----------------~a~Fpght~~vk~i~Fs---------ENGY------------------------~Lat~add  410 (506)
T KOG0289|consen  381 N-----------------VAKFPGHTGPVKAISFS---------ENGY------------------------WLATAADD  410 (506)
T ss_pred             c-----------------cccCCCCCCceeEEEec---------cCce------------------------EEEEEecC
Confidence            3                 67889999999999996         4443                        89999999


Q ss_pred             CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581          335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK  414 (744)
Q Consensus       335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (744)
                      +.|++||++....+.                                                              .+.
T Consensus       411 ~~V~lwDLRKl~n~k--------------------------------------------------------------t~~  428 (506)
T KOG0289|consen  411 GSVKLWDLRKLKNFK--------------------------------------------------------------TIQ  428 (506)
T ss_pred             CeEEEEEehhhcccc--------------------------------------------------------------eee
Confidence            999999998755332                                                              122


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581          415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV  494 (744)
Q Consensus       415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~  494 (744)
                      ......+.++.|.+.|++|+.+ ...+++|....   ..+-|..- ..+..|....+.+.|....+++++++.|..++++
T Consensus       429 l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k---~~k~W~~~-~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  429 LDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKK---KTKSWTEI-KELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             ccccccceeEEEcCCCCeEEee-cceeEEEEEec---ccccceee-ehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            2233568889999999999887 44566666653   33445443 4456666788999999999999999999998887


Q ss_pred             Ec
Q 004581          495 DV  496 (744)
Q Consensus       495 d~  496 (744)
                      .+
T Consensus       504 a~  505 (506)
T KOG0289|consen  504 AL  505 (506)
T ss_pred             ec
Confidence            64

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.2e-26  Score=216.34  Aligned_cols=301  Identities=18%  Similarity=0.202  Sum_probs=230.5

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE-EEec--------CCCCC-CCCceeEEEEEEecCC-
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR-ITVG--------LGGLG-SGPELCIWSLLSLRCG-  192 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~--------~~~~~-~~~~~~v~~~~~~~~~-  192 (744)
                      ..+..|.-+|++|+++||+++.++++.+|+|.-|++.+|+.... +..+        ..... ..|...+.+++.++|| 
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            66778999999999999999999999999999999999986522 2210        01112 3788999999999999 


Q ss_pred             eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581          193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY  272 (744)
Q Consensus       193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  272 (744)
                      +|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|++....                 +
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-----------------~  278 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-----------------Y  278 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-----------------H
Confidence            99999999999999999999999999999999999999888899999999999999998766                 3


Q ss_pred             EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581          273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE  352 (744)
Q Consensus       273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  352 (744)
                      +.++.+|...|.++...         .-++                        .+-+|+.|+++++|++....++    
T Consensus       279 vetlyGHqd~v~~IdaL---------~reR------------------------~vtVGgrDrT~rlwKi~eesql----  321 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDAL---------SRER------------------------CVTVGGRDRTVRLWKIPEESQL----  321 (479)
T ss_pred             HHHHhCCccceeeechh---------cccc------------------------eEEeccccceeEEEecccccee----
Confidence            67889999999888763         2222                        5556669999999987431100    


Q ss_pred             cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 004581          353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML  432 (744)
Q Consensus       353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  432 (744)
                                                                                  +.                  
T Consensus       322 ------------------------------------------------------------if------------------  323 (479)
T KOG0299|consen  322 ------------------------------------------------------------IF------------------  323 (479)
T ss_pred             ------------------------------------------------------------ee------------------
Confidence                                                                        00                  


Q ss_pred             EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccc
Q 004581          433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH  512 (744)
Q Consensus       433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  512 (744)
                                                     .++...+-|++|- +...+++|+.+|.|.+|++...+++.+.....+..
T Consensus       324 -------------------------------rg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~  371 (479)
T KOG0299|consen  324 -------------------------------RGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI  371 (479)
T ss_pred             -------------------------------eCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeecccccc
Confidence                                           0011134455553 56678899999999999998888887765433221


Q ss_pred             cc-cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc----ceEEEEecCCCCceeEEeecCCCCCeEEEE-ecCC
Q 004581          513 DR-EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ----RQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSN  586 (744)
Q Consensus       513 ~~-~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~-~~d~  586 (744)
                      .. ....+...|++++..|...++|+|+.+|.|++|-++.+    +++..++  -.+-|++++|++ +|+.++++ +...
T Consensus       372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~-sgk~ivagiGkEh  448 (479)
T KOG0299|consen  372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSN-SGKRIVAGIGKEH  448 (479)
T ss_pred             CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEEcc-CCCEEEEeccccc
Confidence            11 22234469999999999999999999999999999877    3333443  236899999999 88866665 3344


Q ss_pred             eEEEE
Q 004581          587 QVYVF  591 (744)
Q Consensus       587 ~v~vw  591 (744)
                      .+--|
T Consensus       449 RlGRW  453 (479)
T KOG0299|consen  449 RLGRW  453 (479)
T ss_pred             cccee
Confidence            44334

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.9e-26  Score=202.30  Aligned_cols=277  Identities=16%  Similarity=0.176  Sum_probs=213.2

Q ss_pred             ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581          129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS  208 (744)
Q Consensus       129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~  208 (744)
                      .+..|.++.|+|.+..|+.++.||++++||+........+.         |..++.+++|.++..+++|+.||.|+.+|+
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFADESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccCCceEEEeccCceEEEEEe
Confidence            46789999999999999999999999999998886666664         899999999999889999999999999999


Q ss_pred             CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeee
Q 004581          209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV  288 (744)
Q Consensus       209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  288 (744)
                      .++... .+..|...|.|+.+++....+++|+.|++|++||.+....                 ... ......|.++..
T Consensus        83 n~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-----------------~~~-~d~~kkVy~~~v  143 (323)
T KOG1036|consen   83 NTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-----------------VGT-FDQGKKVYCMDV  143 (323)
T ss_pred             cCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-----------------ccc-cccCceEEEEec
Confidence            977654 5566999999999999888999999999999999986431                 111 122336777776


Q ss_pred             eccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccce
Q 004581          289 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT  368 (744)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  368 (744)
                                                         .++.|+.|+.|..+.+||+++.....+..                
T Consensus       144 -----------------------------------~g~~LvVg~~~r~v~iyDLRn~~~~~q~r----------------  172 (323)
T KOG1036|consen  144 -----------------------------------SGNRLVVGTSDRKVLIYDLRNLDEPFQRR----------------  172 (323)
T ss_pred             -----------------------------------cCCEEEEeecCceEEEEEcccccchhhhc----------------
Confidence                                               23489999999999999999755332111                


Q ss_pred             eecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEEEcCCceEEEEee
Q 004581          369 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELK  447 (744)
Q Consensus       369 ~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~la~~~~~~v~l~~~~  447 (744)
                                                                   ...-...++|+++-|++. +++.+-+|.|.+=.++
T Consensus       173 ---------------------------------------------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  173 ---------------------------------------------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             ---------------------------------------------cccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence                                                         011125577888888664 5555678877765554


Q ss_pred             cC-CCCCceEE--eeeccCCc--ccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCc
Q 004581          448 KG-KVGQGEWI--INKRQLPR--KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP  522 (744)
Q Consensus       448 ~~-~~~~~~~~--~~~~~~~~--~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (744)
                      .. +...+.+.  .+.....+  ..-+|++|+|+|-...||+|+.||.|.+||+.+.+.+.+|..           ....
T Consensus       208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-----------~~~S  276 (323)
T KOG1036|consen  208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-----------YETS  276 (323)
T ss_pred             CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-----------CCCc
Confidence            32 11112222  22211111  112899999999999999999999999999999999988887           6788


Q ss_pred             eEEEEECCCCCEEEEEeC
Q 004581          523 ITKMFTSSDGQWLAAVNC  540 (744)
Q Consensus       523 i~~l~~spdg~~las~~~  540 (744)
                      |.+++|+.||..||+++.
T Consensus       277 I~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  277 ISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEEEeccCCCeEEEEec
Confidence            999999999999999974

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1e-26  Score=219.43  Aligned_cols=305  Identities=16%  Similarity=0.152  Sum_probs=218.8

Q ss_pred             ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      .....+++|...|.++++.|.|                                                  .++++|+.
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~G--------------------------------------------------aR~~sGs~  187 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSG--------------------------------------------------ARFVSGSL  187 (641)
T ss_pred             cceEeccCCceEEEEeeecCCC--------------------------------------------------ceeeeccc
Confidence            4455788899999999999999                                                  69999999


Q ss_pred             CCeEEEEEecCCC-ceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCC-----CCCCC
Q 004581          106 DGCVRIYRITDSD-ELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG-----GLGSG  178 (744)
Q Consensus       106 dg~i~iwd~~~~~-~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~  178 (744)
                      |.+|++||+..-. .+...+.+. .....|.+++|++.|..|++.+....++|+|- .|..+..+..+-+     ...++
T Consensus       188 Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKG  266 (641)
T KOG0772|consen  188 DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKG  266 (641)
T ss_pred             cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCC
Confidence            9999999997322 121223332 44568999999999999988888889999995 4555444432111     12348


Q ss_pred             CceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc-ceEEEee-----ccccceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581          179 PELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG-TLLQAHS-----FHKGDVNALAAAPSHNRVFSTGSDGQVILYKA  250 (744)
Q Consensus       179 ~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~-~~~~~~~-----~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~  250 (744)
                      |...+++.+|+|+.  .+++++.||++++||+... +.++.++     +..-+++.++|++||++|++|..||.|.+|+.
T Consensus       267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~  346 (641)
T KOG0772|consen  267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK  346 (641)
T ss_pred             ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence            99999999999998  7999999999999999863 3344443     23346899999999999999999999999998


Q ss_pred             ccCcCCCCCCCCcccccceEEEEeeeeeccC--cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581          251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTH--DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML  328 (744)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l  328 (744)
                      .......              .......|..  .|++++|+         +||+                        +|
T Consensus       347 ~~~~v~p--------------~~~vk~AH~~g~~Itsi~FS---------~dg~------------------------~L  379 (641)
T KOG0772|consen  347 GSRTVRP--------------VMKVKDAHLPGQDITSISFS---------YDGN------------------------YL  379 (641)
T ss_pred             CCccccc--------------ceEeeeccCCCCceeEEEec---------cccc------------------------hh
Confidence            5543211              1334467877  99999998         7776                        99


Q ss_pred             EEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcc
Q 004581          329 ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS  408 (744)
Q Consensus       329 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~  408 (744)
                      ++-+.|+++++||++.++..-...                                                        
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~--------------------------------------------------------  403 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVR--------------------------------------------------------  403 (641)
T ss_pred             hhccCCCceeeeeccccccchhhh--------------------------------------------------------
Confidence            999999999999999765321100                                                        


Q ss_pred             eEEEEEecCCCCeEEEEEcCCCCEEEEEc-------CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCE
Q 004581          409 LLVQVKSKASRKIICSTISNSGMLFAYSD-------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ  481 (744)
Q Consensus       409 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~-------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~  481 (744)
                          ........-+.++|||+.++|++|+       .+.+.+|+..+    ...  +.+  +.-....|..+.|+|--+.
T Consensus       404 ----tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t----~d~--v~k--i~i~~aSvv~~~WhpkLNQ  471 (641)
T KOG0772|consen  404 ----TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT----LDT--VYK--IDISTASVVRCLWHPKLNQ  471 (641)
T ss_pred             ----cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc----eee--EEE--ecCCCceEEEEeecchhhh
Confidence                0011113345566777777777642       23455665443    110  111  1122347888999999999


Q ss_pred             EEEEeCCCcEEEEEc
Q 004581          482 LIIAGHDRRIYVVDV  496 (744)
Q Consensus       482 l~~~~~dg~i~v~d~  496 (744)
                      |.+|+.||.++||--
T Consensus       472 i~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  472 IFAGSGDGTAHVYYD  486 (641)
T ss_pred             eeeecCCCceEEEEC
Confidence            999999999998753

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-25  Score=199.86  Aligned_cols=268  Identities=18%  Similarity=0.267  Sum_probs=215.0

Q ss_pred             eEEEEecCCeEEEEEecCCC---------ceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEE
Q 004581           99 RVALACDDGCVRIYRITDSD---------ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT  169 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~  169 (744)
                      .+++|+....|.=+++.-..         .+.....+..|.+.|+++|.  +|.++|+|+.|-+|+|||+.+...+..+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence            68889998888888775211         12234567799999999999  58999999999999999999998888887


Q ss_pred             ecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                              .|.+.|+++.|.++-   .|++|+.||.|.+|+.....++.++++|.+.|+.++++|.|++.++.+.|+.++
T Consensus        81 --------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr  152 (362)
T KOG0294|consen   81 --------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR  152 (362)
T ss_pred             --------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence                    699999999999887   799999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581          247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP  326 (744)
Q Consensus       247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  326 (744)
                      +||+-.+..                               ++                                      
T Consensus       153 ~WNLV~Gr~-------------------------------a~--------------------------------------  163 (362)
T KOG0294|consen  153 TWNLVRGRV-------------------------------AF--------------------------------------  163 (362)
T ss_pred             eehhhcCcc-------------------------------ce--------------------------------------
Confidence            999987651                               00                                      


Q ss_pred             EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581          327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS  406 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~  406 (744)
                                  +.++.                                                               
T Consensus       164 ------------v~~L~---------------------------------------------------------------  168 (362)
T KOG0294|consen  164 ------------VLNLK---------------------------------------------------------------  168 (362)
T ss_pred             ------------eeccC---------------------------------------------------------------
Confidence                        00000                                                               


Q ss_pred             cceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe
Q 004581          407 TSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG  486 (744)
Q Consensus       407 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~  486 (744)
                                  ...+.+.|+|.|.+++++....|-+|.+..   ...+   .....+   ..+.++.| -++..|++|.
T Consensus       169 ------------~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~---A~v~---~~i~~~---~r~l~~~~-l~~~~L~vG~  226 (362)
T KOG0294|consen  169 ------------NKATLVSWSPQGDHFVVSGRNKIDIYQLDN---ASVF---REIENP---KRILCATF-LDGSELLVGG  226 (362)
T ss_pred             ------------CcceeeEEcCCCCEEEEEeccEEEEEeccc---HhHh---hhhhcc---ccceeeee-cCCceEEEec
Confidence                        111225577888888887777788887764   1111   001111   24556666 3788999999


Q ss_pred             CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE--CCCCCEEEEEeCCCcEEEEECCCcc
Q 004581          487 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT--SSDGQWLAAVNCFGDVYIFNLEIQR  553 (744)
Q Consensus       487 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdg~~las~~~dg~i~iwd~~~~~  553 (744)
                      .|+.|.+||..+..+...|.+           |...|..+.+  .|++.||++++.||.|+|||++...
T Consensus       227 d~~~i~~~D~ds~~~~~~~~A-----------H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPLTEFLA-----------HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CCceEEEeccCCCccceeeec-----------chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            999999999998899999998           9999999984  6788999999999999999998653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.6e-25  Score=197.38  Aligned_cols=296  Identities=14%  Similarity=0.145  Sum_probs=222.2

Q ss_pred             CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581           25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        25 ~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      .++.+.|....+.|.+|.|+++|                                                  .+|++++
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G--------------------------------------------------~~litss   33 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDG--------------------------------------------------LLLITSS   33 (311)
T ss_pred             cccccccccCCCceeEEEecCCC--------------------------------------------------CEEEEec
Confidence            44555666678899999999999                                                  5888899


Q ss_pred             cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581          105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELC  182 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (744)
                      +|.+++|||..++..+   +++..++-.|..++|......++.++.  |.+||..++.+.+.++.+.        +|...
T Consensus        34 ~dDsl~LYd~~~g~~~---~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~--------GH~~~  102 (311)
T KOG1446|consen   34 EDDSLRLYDSLSGKQV---KTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP--------GHKKR  102 (311)
T ss_pred             CCCeEEEEEcCCCcee---eEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC--------CCCce
Confidence            9999999999988887   778878888999999888888887776  8899999999999999998        89999


Q ss_pred             EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCC
Q 004581          183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGL  261 (744)
Q Consensus       183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  261 (744)
                      |.+++.+|-+ .+++++.|++|++||++..++...+.....  ..+||.|+|-.+|++.....|++||++.-...+..  
T Consensus       103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~--  178 (311)
T KOG1446|consen  103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFT--  178 (311)
T ss_pred             EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCce--
Confidence            9999999988 999999999999999998888777665433  34799999998888887779999999874421110  


Q ss_pred             CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581          262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC  341 (744)
Q Consensus       262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~  341 (744)
                                             ...+                                           . +       
T Consensus       179 -----------------------tf~i-------------------------------------------~-~-------  184 (311)
T KOG1446|consen  179 -----------------------TFSI-------------------------------------------T-D-------  184 (311)
T ss_pred             -----------------------eEcc-------------------------------------------C-C-------
Confidence                                   0000                                           0 0       


Q ss_pred             cCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 004581          342 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI  421 (744)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  421 (744)
                                                                                                ......
T Consensus       185 --------------------------------------------------------------------------~~~~ew  190 (311)
T KOG1446|consen  185 --------------------------------------------------------------------------NDEAEW  190 (311)
T ss_pred             --------------------------------------------------------------------------CCccce
Confidence                                                                                      000223


Q ss_pred             EEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc
Q 004581          422 ICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       422 ~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~  500 (744)
                      ..+.|||||+++..+ ..+.+++.+--.   +...-.....  +....-.-...|+||++++++|+.||+|.+|++++|.
T Consensus       191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~---G~~~~tfs~~--~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  191 TDLEFSPDGKSILLSTNASFIYLLDAFD---GTVKSTFSGY--PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             eeeEEcCCCCEEEEEeCCCcEEEEEccC---CcEeeeEeec--cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence            445566666665554 444445554433   1111111111  1111122577899999999999999999999999999


Q ss_pred             eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      .+..+.+.          +.+++.++.|+|.-.++|+++  ..+.+|=..
T Consensus       266 ~v~~~~~~----------~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  266 KVAVLRGP----------NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             EeeEecCC----------CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence            99999884          688899999999977777764  457777544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=218.04  Aligned_cols=219  Identities=20%  Similarity=0.290  Sum_probs=187.2

Q ss_pred             CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581           14 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS   93 (744)
Q Consensus        14 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (744)
                      .-.+.+|+..+...+.++......|.++.|-.||                                              
T Consensus        47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG----------------------------------------------   80 (487)
T KOG0310|consen   47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG----------------------------------------------   80 (487)
T ss_pred             ccEEEEEecchhhhhhhHHhhccceeEEEeecCC----------------------------------------------
Confidence            3579999999988888888889999999999999                                              


Q ss_pred             cccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581           94 VVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGL  172 (744)
Q Consensus        94 ~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~  172 (744)
                          ++||+|.+.|.|+|||..+...+   +.+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+.+......+.   
T Consensus        81 ----~LlaaGD~sG~V~vfD~k~r~iL---R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~---  150 (487)
T KOG0310|consen   81 ----RLLAAGDESGHVKVFDMKSRVIL---RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS---  150 (487)
T ss_pred             ----eEEEccCCcCcEEEeccccHHHH---HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---
Confidence                68999999999999996543344   88999999999999999655 67788889999999999888655665   


Q ss_pred             CCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc-ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          173 GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG-TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       173 ~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                           +|+..|.|.+|+|..  .+++|+.||.|++||.++. ..+.++. |..+|..+.+.|.|..+++++. ..|++||
T Consensus       151 -----~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWD  223 (487)
T KOG0310|consen  151 -----GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWD  223 (487)
T ss_pred             -----CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence                 899999999999976  7999999999999999986 5666665 8999999999999999999865 5699999


Q ss_pred             cccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581          250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI  329 (744)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~  329 (744)
                      +.++..                .+..+..|...|+|+.+.         .++.                        .|+
T Consensus       224 l~~G~q----------------ll~~~~~H~KtVTcL~l~---------s~~~------------------------rLl  254 (487)
T KOG0310|consen  224 LTTGGQ----------------LLTSMFNHNKTVTCLRLA---------SDST------------------------RLL  254 (487)
T ss_pred             ecCCce----------------ehhhhhcccceEEEEEee---------cCCc------------------------eEe
Confidence            996652                244455599999999996         3443                        999


Q ss_pred             EecCCCeEEEEecCc
Q 004581          330 SAGDDTKLFAYCANE  344 (744)
Q Consensus       330 s~~~d~~i~~~~~~~  344 (744)
                      +++-|+.+++||..+
T Consensus       255 S~sLD~~VKVfd~t~  269 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTN  269 (487)
T ss_pred             ecccccceEEEEccc
Confidence            999999999999765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8.7e-28  Score=216.76  Aligned_cols=289  Identities=15%  Similarity=0.237  Sum_probs=219.3

Q ss_pred             eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCC
Q 004581           28 KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDG  107 (744)
Q Consensus        28 ~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg  107 (744)
                      +..|.+|...|.|+|=+|..  +                                               ..+|+|+.||
T Consensus        59 v~~L~gHrdGV~~lakhp~~--l-----------------------------------------------s~~aSGs~DG   89 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNK--L-----------------------------------------------STVASGSCDG   89 (433)
T ss_pred             hhhccccccccchhhcCcch--h-----------------------------------------------hhhhccccCc
Confidence            34678999999999999975  2                                               3799999999


Q ss_pred             eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEE
Q 004581          108 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL  187 (744)
Q Consensus       108 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  187 (744)
                      .|+|||+....++   .++.+|.+.|..+++..  ..+++++.|.+|+.|.++. ..++.+.         ....+..+.
T Consensus        90 ~VkiWnlsqR~~~---~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til---------g~s~~~gId  154 (433)
T KOG0268|consen   90 EVKIWNLSQRECI---RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL---------GKSVYLGID  154 (433)
T ss_pred             eEEEEehhhhhhh---heeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee---------ccccccccc
Confidence            9999999877766   89999999999999986  7789999999999999854 5666664         445566666


Q ss_pred             EecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCccc
Q 004581          188 SLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSE  265 (744)
Q Consensus       188 ~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  265 (744)
                      .+..+ .+++++.+  |.|||.+...+++++.--...|.++.|+|.. ..|++|+.|+.|.+||++....          
T Consensus       155 h~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P----------  222 (433)
T KOG0268|consen  155 HHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP----------  222 (433)
T ss_pred             cccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc----------
Confidence            65555 67777654  9999999999999999888899999999976 4566777999999999998762          


Q ss_pred             ccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581          266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF  345 (744)
Q Consensus       266 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~  345 (744)
                             +... .....-..++|+         |                        ..-.+++|.+|..++.||++..
T Consensus       223 -------l~KV-i~~mRTN~Iswn---------P------------------------eafnF~~a~ED~nlY~~DmR~l  261 (433)
T KOG0268|consen  223 -------LKKV-ILTMRTNTICWN---------P------------------------EAFNFVAANEDHNLYTYDMRNL  261 (433)
T ss_pred             -------ccee-eeeccccceecC---------c------------------------cccceeeccccccceehhhhhh
Confidence                   1111 111222344554         2                        2225666777777777666542


Q ss_pred             CCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEE
Q 004581          346 TKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICST  425 (744)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  425 (744)
                      ..                                                                              
T Consensus       262 ~~------------------------------------------------------------------------------  263 (433)
T KOG0268|consen  262 SR------------------------------------------------------------------------------  263 (433)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeee
Q 004581          426 ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF  505 (744)
Q Consensus       426 ~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~  505 (744)
                                                ..       ....+|...+.+++|||.|+-+++|+.|.+|+||....+.....+
T Consensus       264 --------------------------p~-------~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY  310 (433)
T KOG0268|consen  264 --------------------------PL-------NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY  310 (433)
T ss_pred             --------------------------cc-------hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh
Confidence                                      00       234456668999999999999999999999999999766543333


Q ss_pred             ccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581          506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ  554 (744)
Q Consensus       506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~  554 (744)
                      ...          -...|.++.||.|.+|+++||.|++|++|.....+.
T Consensus       311 htk----------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  311 HTK----------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             hHh----------hhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            221          235699999999999999999999999998765443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1e-26  Score=227.47  Aligned_cols=283  Identities=19%  Similarity=0.288  Sum_probs=235.6

Q ss_pred             CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEe
Q 004581           25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        25 ~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      -+..+.+.+|...|..+++.+..                                                   .+++++
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~---------------------------------------------------~i~s~s   32 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV---------------------------------------------------CIISGS   32 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe---------------------------------------------------EEeecC
Confidence            35667899999999999988776                                                   899999


Q ss_pred             cCCeEEEEEecCCCceeEeecccCccCcEEE-EEEec-CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581          105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLS-VTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC  182 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (744)
                      .||++++|+-. ++.....+.+.+|.+.|.+ ++|-+ ++-.|++|+.|.+|.+|...+..++..+.        +|+..
T Consensus        33 Rd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk--------gH~sn  103 (745)
T KOG0301|consen   33 RDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK--------GHKSN  103 (745)
T ss_pred             CCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh--------ccccc
Confidence            99999999986 4444333678889998888 89886 44569999999999999999999999998        89999


Q ss_pred             EEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCC
Q 004581          183 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLS  262 (744)
Q Consensus       183 v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  262 (744)
                      |.++....++.+++|+.|.++++|-.  +++...+.+|++.|+++++-|++ .++||+.|.+|++|.-.+          
T Consensus       104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~----------  170 (745)
T KOG0301|consen  104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT----------  170 (745)
T ss_pred             eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc----------
Confidence            99999888889999999999999965  57788899999999999999988 899999999999998744          


Q ss_pred             cccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEec
Q 004581          263 SSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCA  342 (744)
Q Consensus       263 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~  342 (744)
                               .++.+.+|++.|+.+++-         ++.                         .+++++.||.|++|++
T Consensus       171 ---------~l~tf~gHtD~VRgL~vl---------~~~-------------------------~flScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  171 ---------LLKTFSGHTDCVRGLAVL---------DDS-------------------------HFLSCSNDGSIRLWDL  207 (745)
T ss_pred             ---------hhhhhccchhheeeeEEe---------cCC-------------------------CeEeecCCceEEEEec
Confidence                     367889999999999985         332                         6999999999999988


Q ss_pred             CccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeE
Q 004581          343 NEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKII  422 (744)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  422 (744)
                      ...                                                               .+            
T Consensus       208 ~ge---------------------------------------------------------------~l------------  212 (745)
T KOG0301|consen  208 DGE---------------------------------------------------------------VL------------  212 (745)
T ss_pred             cCc---------------------------------------------------------------ee------------
Confidence            420                                                               01            


Q ss_pred             EEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee
Q 004581          423 CSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL  502 (744)
Q Consensus       423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~  502 (744)
                                                            .++.+|...+.++....++..++++++|++++||+..  ++.
T Consensus       213 --------------------------------------~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~  252 (745)
T KOG0301|consen  213 --------------------------------------LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV  252 (745)
T ss_pred             --------------------------------------eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE
Confidence                                                  1223444466677777788899999999999999975  777


Q ss_pred             eeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          503 HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      +.+.-           ....|+++.+-++|. +++|+.||.|+||..+
T Consensus       253 q~I~l-----------PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  253 QVITL-----------PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEec-----------CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            77774           345899999988887 6778889999999886

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.8e-26  Score=225.81  Aligned_cols=263  Identities=23%  Similarity=0.379  Sum_probs=219.9

Q ss_pred             CCCeeEEecCCCeEEEEEccCCceeE--EeeccCcceeE-EeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDLKQKI--VLQSIDFSIWQ-MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~h~~~i~~-v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      ++..++++|+||++++|+-.....+.  .+.+|.+.|.+ +++-+..+                                
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~--------------------------------   71 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK--------------------------------   71 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC--------------------------------
Confidence            45678999999999999976544443  47778888877 77776321                                


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~  160 (744)
                                       .+|++|+.|.+|.+|......++   .+|.+|+..|.|++...++. |++||.|.++++|-. 
T Consensus        72 -----------------~~l~~g~~D~~i~v~~~~~~~P~---~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~-  129 (745)
T KOG0301|consen   72 -----------------GRLVVGGMDTTIIVFKLSQAEPL---YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI-  129 (745)
T ss_pred             -----------------cceEeecccceEEEEecCCCCch---hhhhccccceeeeecCCcCc-eEecccccceEEecc-
Confidence                             37999999999999999877777   89999999999999888887 999999999999975 


Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG  240 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~  240 (744)
                       +++...+.        +|...||++.+.|++.+++|+.|.+|++|.-  ++.++++.+|...|..+++.+++ .+++++
T Consensus       130 -~~l~~~l~--------gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScs  197 (745)
T KOG0301|consen  130 -GELVYSLQ--------GHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCS  197 (745)
T ss_pred             -hhhhcccC--------CcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeec
Confidence             66666666        8999999999999999999999999999976  78999999999999999999875 599999


Q ss_pred             CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccc
Q 004581          241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW  320 (744)
Q Consensus       241 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  320 (744)
                      .||.|++|++....                  +....+|+.-|+++...         .++                   
T Consensus       198 NDg~Ir~w~~~ge~------------------l~~~~ghtn~vYsis~~---------~~~-------------------  231 (745)
T KOG0301|consen  198 NDGSIRLWDLDGEV------------------LLEMHGHTNFVYSISMA---------LSD-------------------  231 (745)
T ss_pred             CCceEEEEeccCce------------------eeeeeccceEEEEEEec---------CCC-------------------
Confidence            99999999996544                  77889999999999854         222                   


Q ss_pred             ccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCC
Q 004581          321 AHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSS  400 (744)
Q Consensus       321 ~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~  400 (744)
                           ..++++++|+++++|+...                                                        
T Consensus       232 -----~~Ivs~gEDrtlriW~~~e--------------------------------------------------------  250 (745)
T KOG0301|consen  232 -----GLIVSTGEDRTLRIWKKDE--------------------------------------------------------  250 (745)
T ss_pred             -----CeEEEecCCceEEEeecCc--------------------------------------------------------
Confidence                 3899999999999998752                                                        


Q ss_pred             CCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeec
Q 004581          401 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK  448 (744)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~  448 (744)
                              +.+.+..+ ...+.++.+-++|..++.++||.||+|....
T Consensus       251 --------~~q~I~lP-ttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  251 --------CVQVITLP-TTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             --------eEEEEecC-ccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence                    12222222 2457778888899999999999999999874

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.7e-25  Score=229.35  Aligned_cols=122  Identities=19%  Similarity=0.280  Sum_probs=111.1

Q ss_pred             cccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCc-------eEEEEEecCCCCCCCCceeEEEEEEecCC--eE
Q 004581          125 SLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGY-------EIYRITVGLGGLGSGPELCIWSLLSLRCG--TL  194 (744)
Q Consensus       125 ~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l  194 (744)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++||+.++.       .+..+.        +|...|.+++|+|++  .|
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--------gH~~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--------GHTKKVGIVSFHPSAMNVL  141 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--------CCCCcEEEEEeCcCCCCEE
Confidence            4779999999999999 88999999999999999997653       334444        799999999999975  79


Q ss_pred             EEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          195 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       195 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      ++++.|++|++||+++++.+..+.+|...|.+++|+|+|.+|++++.|++|++||++++.
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence            999999999999999999999999999999999999999999999999999999998765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4e-26  Score=202.43  Aligned_cols=296  Identities=16%  Similarity=0.155  Sum_probs=206.8

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADS  199 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~  199 (744)
                      ..|++|.+.|++++|+.||+.|||++.|++|++|+++.-.  .-+.++..   .   .-+.-+.+.|.||-  .+++.-.
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n---v---e~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN---V---EYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc---c---cCCCceEEEECCCcceEEEEEcc
Confidence            6788999999999999999999999999999999987622  11222211   1   11245678999998  5667777


Q ss_pred             CCCEEEEeCCC---cceE---------EEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCccccc
Q 004581          200 TGSVQFWDSRH---GTLL---------QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVI  267 (744)
Q Consensus       200 dg~i~vwd~~~---~~~~---------~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  267 (744)
                      ..++++|.+..   |...         ..-+-|...|..+-...++.+|++++.|..|.+|++....             
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~-------------  220 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL-------------  220 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce-------------
Confidence            78899997653   2211         1123466778888888889999999999999999998432             


Q ss_pred             ceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCC
Q 004581          268 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK  347 (744)
Q Consensus       268 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~  347 (744)
                           +..+......                                                                 
T Consensus       221 -----L~~idtnq~~-----------------------------------------------------------------  230 (420)
T KOG2096|consen  221 -----LQSIDTNQSS-----------------------------------------------------------------  230 (420)
T ss_pred             -----eeeecccccc-----------------------------------------------------------------
Confidence                 1111111111                                                                 


Q ss_pred             CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc
Q 004581          348 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS  427 (744)
Q Consensus       348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  427 (744)
                                                                                               -...++|
T Consensus       231 -------------------------------------------------------------------------n~~aavS  237 (420)
T KOG2096|consen  231 -------------------------------------------------------------------------NYDAAVS  237 (420)
T ss_pred             -------------------------------------------------------------------------ccceeeC
Confidence                                                                                     1123355


Q ss_pred             CCCCEEEE-EcCCceEEEEeecCCCC-CceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-------C
Q 004581          428 NSGMLFAY-SDHVKPSLFELKKGKVG-QGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-------S  498 (744)
Q Consensus       428 ~~g~~la~-~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-------~  498 (744)
                      |+|++||+ +-.-.|++|++-....+ .+. -....++.+|...|..++||+++.++++.+.||+++|||.+       +
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqe-v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQE-VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhh-hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            55555555 34444555555432211 110 01125677888899999999999999999999999999984       2


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV  578 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  578 (744)
                      .+.+++...+       +-...+.-..++.||+|+.||.+.. ..+++|..++++..-.+...|+..|.+++|++ +|++
T Consensus       317 pk~Lk~g~~p-------l~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~  387 (420)
T KOG2096|consen  317 PKILKEGSAP-------LHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKY  387 (420)
T ss_pred             chHhhcCCcc-------hhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC-CCcE
Confidence            2333333211       1112344558999999999998754 46999999999988888888999999999999 9999


Q ss_pred             EEEEecCCeEEEEE
Q 004581          579 LIITTSSNQVYVFD  592 (744)
Q Consensus       579 l~~~~~d~~v~vwd  592 (744)
                      +++++ |..++++.
T Consensus       388 ~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  388 IATCG-DRYVRVIR  400 (420)
T ss_pred             Eeeec-ceeeeeec
Confidence            99987 67788876

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=7.4e-28  Score=221.03  Aligned_cols=291  Identities=14%  Similarity=0.153  Sum_probs=232.4

Q ss_pred             ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEec
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      .....+..|.+.+..+.|-++.                                                  ..|++|+.
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~s--------------------------------------------------dtlatgg~  195 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNS--------------------------------------------------DTLATGGS  195 (459)
T ss_pred             hhhhhhhccccccceeEEccCc--------------------------------------------------chhhhcch
Confidence            3445677899999999999986                                                  48999999


Q ss_pred             CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS  185 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (744)
                      |..|++|++..+ ......+|.|-.+.|+++.|.++++.+++++.|+.+++|++..++...++.        +|...|++
T Consensus       196 Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs--------GHtdkVt~  266 (459)
T KOG0288|consen  196 DRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS--------GHTDKVTA  266 (459)
T ss_pred             hhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc--------ccccceee
Confidence            999999999744 445558888999999999999999999999999999999999999999998        89999999


Q ss_pred             EEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcc
Q 004581          186 LLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS  264 (744)
Q Consensus       186 ~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  264 (744)
                      +.|.... .+++|+.|.+|+.||+....+..++-. ...+..|+.+  ...+++|-.|++|++||.+....         
T Consensus       267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~---------  334 (459)
T KOG0288|consen  267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK---------  334 (459)
T ss_pred             ehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCce---------
Confidence            9999887 699999999999999999888877653 4556666665  55688999999999999988762         


Q ss_pred             cccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          265 EVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       265 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                              ......+. .|+++..+         .++.                        .|.+++.|.++.+.|+++
T Consensus       335 --------~~sv~~gg-~vtSl~ls---------~~g~------------------------~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  335 --------TRSVPLGG-RVTSLDLS---------MDGL------------------------ELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             --------eeEeecCc-ceeeEeec---------cCCe------------------------EEeeecCCCceeeeeccc
Confidence                    44555554 89999886         5554                        788889999999999987


Q ss_pred             cCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEE
Q 004581          345 FTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICS  424 (744)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  424 (744)
                      ........                   ..+                                        .......+.+
T Consensus       373 ~eI~~~~s-------------------A~g----------------------------------------~k~asDwtrv  393 (459)
T KOG0288|consen  373 KEIRQTFS-------------------AEG----------------------------------------FKCASDWTRV  393 (459)
T ss_pred             ccEEEEee-------------------ccc----------------------------------------ccccccccee
Confidence            44221110                   000                                        0111347788


Q ss_pred             EEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581          425 TISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV  494 (744)
Q Consensus       425 ~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~  494 (744)
                      .|||++.|+|+| .++.|+||++..+   ...   ...........|++++|+|.|..|++++.++.+.+|
T Consensus       394 vfSpd~~YvaAGS~dgsv~iW~v~tg---KlE---~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGSVYIWSVFTG---KLE---KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EECCCCceeeeccCCCcEEEEEccCc---eEE---EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            899999999995 9999999999762   211   112233333379999999999999999999999998

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.9e-27  Score=213.37  Aligned_cols=286  Identities=14%  Similarity=0.195  Sum_probs=226.8

Q ss_pred             ecccCccCcEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCC
Q 004581          124 RSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS  202 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~  202 (744)
                      ..|.+|...|.|++=+|.. ..+++|+.||.|++||+.+..+...+.        .|.+.|..+++.. +.+++++.|.+
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~--------AH~G~V~Gi~v~~-~~~~tvgdDKt  130 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK--------AHEGLVRGICVTQ-TSFFTVGDDKT  130 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee--------cccCceeeEEecc-cceEEecCCcc
Confidence            6778999999999999987 789999999999999999999999998        6999999999987 67899999999


Q ss_pred             EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581          203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD  282 (744)
Q Consensus       203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  282 (744)
                      |+.|-++ +.++.++.+ ...++.+.-+..++.++|+|.+  |.|||.....                 ++..+.--...
T Consensus       131 vK~wk~~-~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-----------------Pv~smswG~Dt  189 (433)
T KOG0268|consen  131 VKQWKID-GPPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-----------------PVSSMSWGADS  189 (433)
T ss_pred             eeeeecc-CCcceeeec-cccccccccccccccccccCce--eeecccccCC-----------------ccceeecCCCc
Confidence            9999988 567777776 5667777777777888888764  9999987654                 24445555566


Q ss_pred             ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581          283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI  362 (744)
Q Consensus       283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  362 (744)
                      |.++.++         |..                       ..+|++++.|+.|.+||+++...+.             
T Consensus       190 i~svkfN---------pvE-----------------------TsILas~~sDrsIvLyD~R~~~Pl~-------------  224 (433)
T KOG0268|consen  190 ISSVKFN---------PVE-----------------------TSILASCASDRSIVLYDLRQASPLK-------------  224 (433)
T ss_pred             eeEEecC---------CCc-----------------------chheeeeccCCceEEEecccCCccc-------------
Confidence            6677665         222                       1377888888888888877532110             


Q ss_pred             ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceE
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS  442 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~  442 (744)
                                                                       .                              
T Consensus       225 -------------------------------------------------K------------------------------  225 (433)
T KOG0268|consen  225 -------------------------------------------------K------------------------------  225 (433)
T ss_pred             -------------------------------------------------e------------------------------
Confidence                                                             0                              


Q ss_pred             EEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCC
Q 004581          443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEP  521 (744)
Q Consensus       443 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~  521 (744)
                                        ..+.-   ..+.|+|+|.+--+++|++|..++.||+... .++..+.+           |.+
T Consensus       226 ------------------Vi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-----------hvs  273 (433)
T KOG0268|consen  226 ------------------VILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-----------HVS  273 (433)
T ss_pred             ------------------eeeec---cccceecCccccceeeccccccceehhhhhhcccchhhcc-----------cce
Confidence                              00000   3456789997778888999999999998643 45666666           999


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          522 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       522 ~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      .|.++.|||.|+-+++||.|.+|+||..+.+...-......-..|.++.||- |.+++++|++|+.|++|.....
T Consensus       274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence            9999999999999999999999999999988765444322226899999999 9999999999999999987643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.6e-27  Score=199.74  Aligned_cols=241  Identities=23%  Similarity=0.280  Sum_probs=190.3

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (744)
                      .+||+++.|++|+|+.+..+.....+.+|.||+++|..++|..  -|.+||+++.||.|.||.-++|+-.+....     
T Consensus        24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-----   98 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-----   98 (299)
T ss_pred             ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-----
Confidence            6999999999999999997776667799999999999999976  799999999999999999887743322221     


Q ss_pred             CCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCc-c--eEEEeeccccceeEEEEcCC---C-----------CE
Q 004581          176 GSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHG-T--LLQAHSFHKGDVNALAAAPS---H-----------NR  235 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~-~--~~~~~~~h~~~v~~l~~~~~---~-----------~~  235 (744)
                       ..|...|++++|.|.+   .|+++++||.|.|.+.+.. .  .......|.-.|++++|.|.   |           +.
T Consensus        99 -~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr  177 (299)
T KOG1332|consen   99 -AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR  177 (299)
T ss_pred             -hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence             2699999999999987   7899999999999988753 2  22445689999999999986   4           56


Q ss_pred             EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccc
Q 004581          236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDF  315 (744)
Q Consensus       236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (744)
                      |++|+.|..|++|+.....               |..-..+.+|++-|+.++++|..+                      
T Consensus       178 lvSgGcDn~VkiW~~~~~~---------------w~~e~~l~~H~dwVRDVAwaP~~g----------------------  220 (299)
T KOG1332|consen  178 LVSGGCDNLVKIWKFDSDS---------------WKLERTLEGHKDWVRDVAWAPSVG----------------------  220 (299)
T ss_pred             eeccCCccceeeeecCCcc---------------hhhhhhhhhcchhhhhhhhccccC----------------------
Confidence            9999999999999998753               666677999999999999984322                      


Q ss_pred             cccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCc
Q 004581          316 SYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNV  395 (744)
Q Consensus       316 ~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~  395 (744)
                             .....|++++.||++.+|............                                           
T Consensus       221 -------l~~s~iAS~SqDg~viIwt~~~e~e~wk~t-------------------------------------------  250 (299)
T KOG1332|consen  221 -------LPKSTIASCSQDGTVIIWTKDEEYEPWKKT-------------------------------------------  250 (299)
T ss_pred             -------CCceeeEEecCCCcEEEEEecCccCccccc-------------------------------------------
Confidence                   112389999999999999876321111000                                           


Q ss_pred             ccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeec
Q 004581          396 ESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKK  448 (744)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~  448 (744)
                                   .+..    ....+..+.||..|.+|++ +.++.+.+|.-+.
T Consensus       251 -------------ll~~----f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  251 -------------LLEE----FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             -------------cccc----CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence                         1111    2256778889999999988 4888888887654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.7e-27  Score=200.86  Aligned_cols=229  Identities=19%  Similarity=0.239  Sum_probs=194.1

Q ss_pred             CeeEEecCCCeEEEEEccC-CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      ..+++++.||++++||+.. .++++.++.|...|.++.+++..+                                    
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r------------------------------------  117 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR------------------------------------  117 (311)
T ss_pred             ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc------------------------------------
Confidence            4588999999999999643 468889999999999999999774                                    


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCc
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                                   +.+++++.|++|++|+...+..+   +++.+|...|...+||| ..+.+++++.|+++++||++...
T Consensus       118 -------------~~~ltsSWD~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g  181 (311)
T KOG0277|consen  118 -------------RIFLTSSWDGTIKLWDPNRPNSV---QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG  181 (311)
T ss_pred             -------------eeEEeeccCCceEeecCCCCcce---EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence                         46777799999999999866666   88999999999999999 56789999999999999998754


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCC-CEEEee
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSH-NRVFST  239 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~  239 (744)
                      ....+.        .|...+.++.|+.-+  .+++|+.|+.|+.||++. ..++..+.+|.-.|..+.|||.. ..|+++
T Consensus       182 k~~~i~--------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa  253 (311)
T KOG0277|consen  182 KFMSIE--------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA  253 (311)
T ss_pred             ceeEEE--------eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc
Confidence            444466        588999999999765  799999999999999987 56788999999999999999964 678899


Q ss_pred             cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581          240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK  319 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (744)
                      +.|=++++||...+..                .+.....|+.-|..+.++.                             
T Consensus       254 sYDmT~riw~~~~~ds----------------~~e~~~~HtEFv~g~Dws~-----------------------------  288 (311)
T KOG0277|consen  254 SYDMTVRIWDPERQDS----------------AIETVDHHTEFVCGLDWSL-----------------------------  288 (311)
T ss_pred             cccceEEecccccchh----------------hhhhhhccceEEecccccc-----------------------------
Confidence            9999999999986542                2445567888888888862                             


Q ss_pred             cccCCCcEEEEecCCCeEEEEec
Q 004581          320 WAHLGVPMLISAGDDTKLFAYCA  342 (744)
Q Consensus       320 w~~~~~~~l~s~~~d~~i~~~~~  342 (744)
                         -....+++++.|..+++|+.
T Consensus       289 ---~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  289 ---FDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ---ccCceeeecccccceeeecc
Confidence               12348999999999999984

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.5e-27  Score=226.68  Aligned_cols=196  Identities=21%  Similarity=0.323  Sum_probs=167.1

Q ss_pred             ccccccCCeEEEEecCCeEEEEEecCCCc---eeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC--ceE
Q 004581           91 EQSVVEDRRVALACDDGCVRIYRITDSDE---LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG--YEI  165 (744)
Q Consensus        91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~--~~~  165 (744)
                      ....+.+++|.+|+.||.|++|++.....   -.+...++.|...|..++...+|+.|++++.|-+|++|+...+  -+.
T Consensus        31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~  110 (735)
T KOG0308|consen   31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM  110 (735)
T ss_pred             cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH
Confidence            34456677999999999999999973322   2245788999999999999999999999999999999999887  466


Q ss_pred             EEEEecCCCCCCCCceeEEEEEE-ecCC-eEEEEcCCCCEEEEeCCCcc--eEE--------Eee-ccccceeEEEEcCC
Q 004581          166 YRITVGLGGLGSGPELCIWSLLS-LRCG-TLVSADSTGSVQFWDSRHGT--LLQ--------AHS-FHKGDVNALAAAPS  232 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~l~s~~~dg~i~vwd~~~~~--~~~--------~~~-~h~~~v~~l~~~~~  232 (744)
                      ..+.        .|...|.|+++ -++. .+++|+-|+.|.+||+.++.  .+.        .+. ++...|.+++-++.
T Consensus       111 stir--------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t  182 (735)
T KOG0308|consen  111 STIR--------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT  182 (735)
T ss_pred             hhhh--------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence            6666        69999999999 5666 89999999999999999872  232        233 78889999999999


Q ss_pred             CCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCC
Q 004581          233 HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP  312 (744)
Q Consensus       233 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (744)
                      |..|++|+..+.+++||.++..                 .+..+++|+..|+.+-++         .||.          
T Consensus       183 ~t~ivsGgtek~lr~wDprt~~-----------------kimkLrGHTdNVr~ll~~---------dDGt----------  226 (735)
T KOG0308|consen  183 GTIIVSGGTEKDLRLWDPRTCK-----------------KIMKLRGHTDNVRVLLVN---------DDGT----------  226 (735)
T ss_pred             ceEEEecCcccceEEecccccc-----------------ceeeeeccccceEEEEEc---------CCCC----------
Confidence            9999999999999999999876                 367788999999999997         6665          


Q ss_pred             ccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          313 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       313 ~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                                    .+++++.||+|++||+..
T Consensus       227 --------------~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  227 --------------RLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             --------------eEeecCCCceEEeeeccc
Confidence                          999999999999999964

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=208.16  Aligned_cols=190  Identities=18%  Similarity=0.193  Sum_probs=174.8

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      ..+++||.|.++.++|..+.+.+.+|+||...|..+.|+|+.                                      
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--------------------------------------  273 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--------------------------------------  273 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--------------------------------------
Confidence            568999999999999999999999999999999999999998                                      


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                                  ..+++++.|..|+||........   .....|+++|+.+..+|.|.||++++.|++....|+++|..+
T Consensus       274 ------------~~v~~aSad~~i~vws~~~~s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l  338 (506)
T KOG0289|consen  274 ------------DTVITASADEIIRVWSVPLSSEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL  338 (506)
T ss_pred             ------------hheeecCCcceEEeeccccccCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence                        58899999999999999755554   677899999999999999999999999999999999999998


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ  244 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~  244 (744)
                      ......      ...-.+++.+|+||| .|.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|-+|++++.|+.
T Consensus       339 t~vs~~------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~  412 (506)
T KOG0289|consen  339 TVVSDE------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS  412 (506)
T ss_pred             EEEeec------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence            877631      234568999999999 7889999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcccCc
Q 004581          245 VILYKASCES  254 (744)
Q Consensus       245 i~iw~~~~~~  254 (744)
                      |++||++...
T Consensus       413 V~lwDLRKl~  422 (506)
T KOG0289|consen  413 VKLWDLRKLK  422 (506)
T ss_pred             EEEEEehhhc
Confidence            9999998754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.7e-24  Score=180.51  Aligned_cols=298  Identities=13%  Similarity=0.152  Sum_probs=220.7

Q ss_pred             ccCcEEEEEEecCCCEEEEEeCCCeEEEEEc------cCCceEEEEEec-CCCCCCCCceeEEEEEEecCC-eEEEEcCC
Q 004581          129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDA------KLGYEIYRITVG-LGGLGSGPELCIWSLLSLRCG-TLVSADST  200 (744)
Q Consensus       129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~------~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d  200 (744)
                      ....|.+++|+|.|.+.+.|+...+++|-..      +.+......... .-...+.|.+.|+|.+|+|+| +|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            4568999999999999999999999888643      222111000000 000123688999999999999 89999999


Q ss_pred             CCEEEEeCCCcce-----EEEeeccccceeEEEEcCC----CCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceE
Q 004581          201 GSVQFWDSRHGTL-----LQAHSFHKGDVNALAAAPS----HNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKW  270 (744)
Q Consensus       201 g~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  270 (744)
                      .+|++.-.+..++     -..+..|.+.|..++|..+    +..|++++. |..|++-|...++                
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~----------------  174 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ----------------  174 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC----------------
Confidence            9999976654322     2457789999999999754    456666544 6677777776665                


Q ss_pred             EEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCC
Q 004581          271 IYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP  350 (744)
Q Consensus       271 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  350 (744)
                       ....+.+|++.|.++--.                                  ++-.+++|+.|.+|++||++-..    
T Consensus       175 -~~~a~sghtghilalysw----------------------------------n~~m~~sgsqdktirfwdlrv~~----  215 (350)
T KOG0641|consen  175 -GFHALSGHTGHILALYSW----------------------------------NGAMFASGSQDKTIRFWDLRVNS----  215 (350)
T ss_pred             -cceeecCCcccEEEEEEe----------------------------------cCcEEEccCCCceEEEEeeeccc----
Confidence             266788999999887542                                  22389999999999999986311    


Q ss_pred             cccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 004581          351 HEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG  430 (744)
Q Consensus       351 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  430 (744)
                                                                                ++..+...         |.   
T Consensus       216 ----------------------------------------------------------~v~~l~~~---------~~---  225 (350)
T KOG0641|consen  216 ----------------------------------------------------------CVNTLDND---------FH---  225 (350)
T ss_pred             ----------------------------------------------------------eeeeccCc---------cc---
Confidence                                                                      00000000         00   


Q ss_pred             CEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcc
Q 004581          431 MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCRE  510 (744)
Q Consensus       431 ~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  510 (744)
                                         +++..            ...|.+++..|.|++|++|-.|....+||+..++.++.|.+   
T Consensus       226 -------------------~~gle------------ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p---  271 (350)
T KOG0641|consen  226 -------------------DGGLE------------SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP---  271 (350)
T ss_pred             -------------------CCCcc------------cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC---
Confidence                               01111            12688899999999999999999999999999999999998   


Q ss_pred             cccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc---ceEEEEecCCCCceeEEeecCCCCCeEEEEecCCe
Q 004581          511 EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ---RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQ  587 (744)
Q Consensus       511 ~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~  587 (744)
                              |...|.++.|||...||.+++.|..|++-|++..   ++...+...|...+..+.|+| ..--+++.+.|.+
T Consensus       272 --------hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~-~d~sfisssadkt  342 (350)
T KOG0641|consen  272 --------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP-QDFSFISSSADKT  342 (350)
T ss_pred             --------CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC-ccceeeeccCcce
Confidence                    9999999999999999999999999999999854   222333345777888889999 5566788899999


Q ss_pred             EEEEEcC
Q 004581          588 VYVFDVE  594 (744)
Q Consensus       588 v~vwd~~  594 (744)
                      +.+|-+.
T Consensus       343 ~tlwa~~  349 (350)
T KOG0641|consen  343 ATLWALN  349 (350)
T ss_pred             EEEeccC
Confidence            9999764

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.2e-24  Score=223.76  Aligned_cols=157  Identities=15%  Similarity=0.131  Sum_probs=129.9

Q ss_pred             EecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC-CCEEEEEeCCCeEEEEEccCCce--------EEEEEecCC
Q 004581          103 ACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSDGYIRSWDAKLGYE--------IYRITVGLG  173 (744)
Q Consensus       103 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~dg~i~vwd~~~~~~--------~~~~~~~~~  173 (744)
                      |+.++.|++|+......   ...+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..        +..+.    
T Consensus        50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~----  122 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK----  122 (568)
T ss_pred             CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee----
Confidence            55678899999864333   3788999999999999997 78999999999999999976532        22333    


Q ss_pred             CCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581          174 GLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       174 ~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                          +|...|.+++|+|++  .|++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||++
T Consensus       123 ----gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        123 ----GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             ----cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence                688999999999988  45789999999999999998887776 56789999999999999999999999999998


Q ss_pred             cCcCCCCCCCCcccccceEEEEeeeeeccCcceeeee
Q 004581          252 CESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV  288 (744)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  288 (744)
                      ++.                 .+..+.+|.+.+.+..+
T Consensus       198 sg~-----------------~i~tl~gH~g~~~s~~v  217 (568)
T PTZ00420        198 KQE-----------------IASSFHIHDGGKNTKNI  217 (568)
T ss_pred             CCc-----------------EEEEEecccCCceeEEE
Confidence            866                 25667788876654443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.3e-25  Score=198.38  Aligned_cols=297  Identities=14%  Similarity=0.156  Sum_probs=224.7

Q ss_pred             EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCC-CCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581          214 LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN-DGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI  292 (744)
Q Consensus       214 ~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  292 (744)
                      ...+..|.+++.+.+|++||.++++|+.|-.|+++|++....... ..+........--.++++..|..+|.++.|.   
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH---  181 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH---  181 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec---
Confidence            355778999999999999999999999999999999984321111 0111112222334578889999999999995   


Q ss_pred             CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581          293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH  372 (744)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  372 (744)
                                                    |....|++++.|++|+++|.........++.                   
T Consensus       182 ------------------------------Pre~ILiS~srD~tvKlFDfsK~saKrA~K~-------------------  212 (430)
T KOG0640|consen  182 ------------------------------PRETILISGSRDNTVKLFDFSKTSAKRAFKV-------------------  212 (430)
T ss_pred             ------------------------------chhheEEeccCCCeEEEEecccHHHHHHHHH-------------------
Confidence                                          3444999999999999999875321111110                   


Q ss_pred             CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCC
Q 004581          373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKV  451 (744)
Q Consensus       373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~  451 (744)
                                                                .....++.++.|+|.|.+|++| ....+++|++++   
T Consensus       213 ------------------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T---  247 (430)
T KOG0640|consen  213 ------------------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT---  247 (430)
T ss_pred             ------------------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccc---
Confidence                                                      0112678999999999999997 556889999976   


Q ss_pred             CCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCC
Q 004581          452 GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD  531 (744)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd  531 (744)
                      ..+.  +....-.+|...|+++.+|+.+++.++++.||.|++||--+++++.++....         ....|++..|+.|
T Consensus       248 ~Qcf--vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH---------~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  248 YQCF--VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH---------GGSEVCSAVFTKN  316 (430)
T ss_pred             eeEe--eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc---------CCceeeeEEEccC
Confidence            3333  2234556777899999999999999999999999999999999999987531         2567999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCcceEEEEecCCC----CceeEEeecCCCCCeEEEEec-CCeEEEEEcCCCcccccccccc
Q 004581          532 GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG----ASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEAKQLGEWSMQHT  606 (744)
Q Consensus       532 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~l~~sp~~~~~l~~~~~-d~~v~vwd~~~~~~~~ws~~~~  606 (744)
                      |+|+.+.+.|..+++|.+.+++.+....+.-.    ..-+...|+. ..++++.-.+ .+.+.-||..+..-        
T Consensus       317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr--------  387 (430)
T KOG0640|consen  317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADR--------  387 (430)
T ss_pred             CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhh--------
Confidence            99999999999999999999999877755311    1224556887 7777776654 46889999887752        


Q ss_pred             CCcccccccCCCceEEEEeCCCC
Q 004581          607 FVLPRRYQEFPGEVIGLSFSPSP  629 (744)
Q Consensus       607 ~~~~~~~~~~~~~v~~i~fspdg  629 (744)
                        ...--.+|++.+.-|.-||.+
T Consensus       388 --~~l~slgHn~a~R~i~HSP~~  408 (430)
T KOG0640|consen  388 --VALLSLGHNGAVRWIVHSPVE  408 (430)
T ss_pred             --hhhcccCCCCCceEEEeCCCC
Confidence              112245799999999999973

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.7e-25  Score=194.54  Aligned_cols=281  Identities=15%  Similarity=0.183  Sum_probs=207.3

Q ss_pred             CCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceE-EEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581          178 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLL-QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                      ..+..|.+++|+|..  .+++++.||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            567889999999944  677999999999999986 4443 445678999999999999999999999999999999998


Q ss_pred             cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581          254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD  333 (744)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~  333 (744)
                      +                  +..+..|..+|+++.|-.                               ....+.|++|+.
T Consensus       105 Q------------------~~~v~~Hd~pvkt~~wv~-------------------------------~~~~~cl~TGSW  135 (347)
T KOG0647|consen  105 Q------------------VSQVAAHDAPVKTCHWVP-------------------------------GMNYQCLVTGSW  135 (347)
T ss_pred             C------------------eeeeeecccceeEEEEec-------------------------------CCCcceeEeccc
Confidence            7                  678889999999999852                               112348999999


Q ss_pred             CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581          334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV  413 (744)
Q Consensus       334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (744)
                      |.+|++||++.....                                                              .++
T Consensus       136 DKTlKfWD~R~~~pv--------------------------------------------------------------~t~  153 (347)
T KOG0647|consen  136 DKTLKFWDTRSSNPV--------------------------------------------------------------ATL  153 (347)
T ss_pred             ccceeecccCCCCee--------------------------------------------------------------eee
Confidence            999999999853311                                                              111


Q ss_pred             EecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEE
Q 004581          414 KSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIY  492 (744)
Q Consensus       414 ~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~  492 (744)
                      ..+  +++.++  +--..++++ ..+..|.+|+++++....+.  + ...   ..-.+++++..+|....|.|+-+|.+.
T Consensus       154 ~LP--eRvYa~--Dv~~pm~vVata~r~i~vynL~n~~te~k~--~-~Sp---Lk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  154 QLP--ERVYAA--DVLYPMAVVATAERHIAVYNLENPPTEFKR--I-ESP---LKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             ecc--ceeeeh--hccCceeEEEecCCcEEEEEcCCCcchhhh--h-cCc---ccceeeEEEEEecCCceEeeeecceEE
Confidence            111  112211  111233444 47889999999762222111  1 111   122688999989999889999999999


Q ss_pred             EEEccCC--ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEe
Q 004581          493 VVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAG  570 (744)
Q Consensus       493 v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~  570 (744)
                      |..+..+  +.-.+|+.|+....  ....--.|++++|+|.-..|++++.||+..+||-+....+...+. |..+|++.+
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~--~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-~~qpItcc~  300 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNS--VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-HPQPITCCS  300 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCC--CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-CCCccceeE
Confidence            9999876  44456666432110  011123578899999999999999999999999887766655554 557999999


Q ss_pred             ecCCCCCeEEEEe
Q 004581          571 FPPQNNNVLIITT  583 (744)
Q Consensus       571 ~sp~~~~~l~~~~  583 (744)
                      |+. +|.++|.+.
T Consensus       301 fn~-~G~ifaYA~  312 (347)
T KOG0647|consen  301 FNR-NGSIFAYAL  312 (347)
T ss_pred             ecC-CCCEEEEEe
Confidence            999 999888774

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=3.4e-26  Score=214.99  Aligned_cols=268  Identities=16%  Similarity=0.228  Sum_probs=206.4

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeeccc--CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (744)
                      +++.+|+. |.|+|||+...+.......|.  .-...|.++..+|||+.|++|+.-.++.|||+............    
T Consensus       432 rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt----  506 (705)
T KOG0639|consen  432 RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT----  506 (705)
T ss_pred             ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC----
Confidence            46777666 899999997443322223333  24568999999999999999999999999999765443222211    


Q ss_pred             CCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          176 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                        ......++++.+||. ..++++.||.|.|||+.+...++.|++|+..+.||.+++||..|-+|+.|.+|+.||++.+.
T Consensus       507 --ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  507 --SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             --CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence              233456789999999 77889999999999999999999999999999999999999999999999999999998865


Q ss_pred             CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581          255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD  334 (744)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d  334 (744)
                      .                    +..|..                                                     
T Consensus       585 q--------------------lqqhdF-----------------------------------------------------  591 (705)
T KOG0639|consen  585 Q--------------------LQQHDF-----------------------------------------------------  591 (705)
T ss_pred             h--------------------hhhhhh-----------------------------------------------------
Confidence            2                    111110                                                     


Q ss_pred             CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581          335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK  414 (744)
Q Consensus       335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (744)
                                                                                                      
T Consensus       592 --------------------------------------------------------------------------------  591 (705)
T KOG0639|consen  592 --------------------------------------------------------------------------------  591 (705)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEE
Q 004581          415 SKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV  493 (744)
Q Consensus       415 ~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v  493 (744)
                         ...|.++..+|++.+||+| ..+.+.+.....         .++..+..|...|.++.|.+.|+++++.+.|+-+..
T Consensus       592 ---~SQIfSLg~cP~~dWlavGMens~vevlh~sk---------p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  592 ---SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK---------PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             ---hhhheecccCCCccceeeecccCcEEEEecCC---------ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence               0234444456666666666 344444444332         112445566778999999999999999999999999


Q ss_pred             EEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581          494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~  549 (744)
                      |...-|..+.+.+.            .+.|.++.+|-|.+|+++|+.|....||.+
T Consensus       660 wrtPyGasiFqskE------------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  660 WRTPYGASIFQSKE------------SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCccccceeeccc------------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99988887777664            788999999999999999999998888865

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.2e-26  Score=221.53  Aligned_cols=232  Identities=20%  Similarity=0.308  Sum_probs=206.8

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE   79 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (744)
                      |++.|..|++|..+|.|.|||.++.+.+..+.+ |...|-|++|+.                                  
T Consensus       225 ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------------------------  270 (484)
T KOG0305|consen  225 WSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------------------------  270 (484)
T ss_pred             ECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------------------------
Confidence            578899999999999999999999999999999 999999999994                                  


Q ss_pred             CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581           80 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA  159 (744)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~  159 (744)
                                        ..+.+|+.|+.|..+|+...+...  ..+.+|...|..++|++|+.+||+|+.|+.+.|||.
T Consensus       271 ------------------~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  271 ------------------SVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             ------------------ceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence                              379999999999999998666653  358899999999999999999999999999999999


Q ss_pred             cCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEc--CCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581          160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSAD--STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR  235 (744)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  235 (744)
                      ...+.+..+.        .|...|.+++|+|-.  .|++|+  .|+.|++||..+|+.+..+.. .+.|.+|.|++..+.
T Consensus       331 ~~~~p~~~~~--------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kE  401 (484)
T KOG0305|consen  331 LSPEPKFTFT--------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKE  401 (484)
T ss_pred             CCccccEEEe--------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCE
Confidence            8888888887        799999999999955  788865  599999999999999988875 678999999999877


Q ss_pred             EEe--ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581          236 VFS--TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI  313 (744)
Q Consensus       236 l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (744)
                      |++  |..++.|.+|+..+..                 .+..+.+|...|..++++         ||+.           
T Consensus       402 i~sthG~s~n~i~lw~~ps~~-----------------~~~~l~gH~~RVl~la~S---------Pdg~-----------  444 (484)
T KOG0305|consen  402 LLSTHGYSENQITLWKYPSMK-----------------LVAELLGHTSRVLYLALS---------PDGE-----------  444 (484)
T ss_pred             EEEecCCCCCcEEEEeccccc-----------------eeeeecCCcceeEEEEEC---------CCCC-----------
Confidence            776  4558899999998855                 478889999999999998         7766           


Q ss_pred             cccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581          314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEF  345 (744)
Q Consensus       314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~  345 (744)
                                   .+++|+.|.++++|++-..
T Consensus       445 -------------~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  445 -------------TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             -------------EEEEecccCcEEeccccCC
Confidence                         9999999999999998653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=198.33  Aligned_cols=282  Identities=15%  Similarity=0.124  Sum_probs=221.5

Q ss_pred             eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCc---cccCCC----CCC-------
Q 004581            7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG---YLNDKS----NDS-------   72 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~---~~~~~~----~~~-------   72 (744)
                      .+.+++.|.+.+||.+++|+++.++.||.+.|+|++|++.+..++++++++......   .|..-.    +..       
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            478899999999999999999999999999999999999999999887765432222   121111    000       


Q ss_pred             ---------------CCCcCcc---CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEE
Q 004581           73 ---------------DDHETSE---SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL  134 (744)
Q Consensus        73 ---------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~  134 (744)
                                     ....++.   ......+....+.....++.+++++.|.+-.+||+++++.+   ..|.||....+
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v---~~LtGHd~ELt  318 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV---NILTGHDSELT  318 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee---ccccCcchhcc
Confidence                           0000000   11112334455566678999999999999999999998887   89999999999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCC-ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCc-c
Q 004581          135 SVTWSADGNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG-T  212 (744)
Q Consensus       135 ~~~~s~dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~  212 (744)
                      .++-+|..+++++++.|.+.++||++.. ..+..|.        +|...|+++.|..+..+++|+.|.+|++||+++. .
T Consensus       319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--------GHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--------GHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             ccccCCcceEEEEeccCceeEeccchhhcceeeeec--------ccccceeEEEEecCCceeecCCCceEEEeeeccccC
Confidence            9999999999999999999999999743 2234444        8999999999999999999999999999999874 5


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581          213 LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI  292 (744)
Q Consensus       213 ~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  292 (744)
                      ++.+++. ..+++.++.+..+..|+.--.+..|++||+....+....             -...++|..-|.|.+|.   
T Consensus       391 plATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP-------------rtsRqgHrRMV~c~AW~---  453 (481)
T KOG0300|consen  391 PLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP-------------RTSRQGHRRMVTCCAWL---  453 (481)
T ss_pred             cceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCC-------------cccccccceeeeeeecc---
Confidence            6777775 678999999988888888888999999999987753221             23567899999999995   


Q ss_pred             CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                             +..                    | ...|++++.|..+.-|.+..
T Consensus       454 -------eeh--------------------p-~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  454 -------EEH--------------------P-ACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             -------ccC--------------------c-ccccccccccceeeeeEecc
Confidence                   111                    1 12689999999999998865

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.2e-24  Score=179.18  Aligned_cols=236  Identities=19%  Similarity=0.241  Sum_probs=191.2

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCC----------c----ee-EEeeccCcceeEEeeccCCCccccccccccccCCccc
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDL----------K----QK-IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYL   65 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~----------~----~~-~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~   65 (744)
                      +.|.|+..++|+...+++|--....          +    .+ ..-+.|.+.|.|.+|||+|                  
T Consensus        40 fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g------------------  101 (350)
T KOG0641|consen   40 FHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG------------------  101 (350)
T ss_pred             ecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc------------------
Confidence            4678899999999999998754321          1    11 1234588999999999999                  


Q ss_pred             cCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecC--CCceeEeecccCccCcEEEEEEecC--
Q 004581           66 NDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD--SDELIYHRSLPRVSGRVLSVTWSAD--  141 (744)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~--~~~~~~~~~~~~h~~~V~~~~~s~d--  141 (744)
                                                      .+||+|+.|.+|++.-+..  ....-....|.-|.+.|..++|-.+  
T Consensus       102 --------------------------------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~  149 (350)
T KOG0641|consen  102 --------------------------------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE  149 (350)
T ss_pred             --------------------------------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC
Confidence                                            6999999999999987652  2222233567789999999999643  


Q ss_pred             --CCEEEEEeC-CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEee
Q 004581          142 --GNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS  218 (744)
Q Consensus       142 --g~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  218 (744)
                        |..|++++. |..|.+-|..+|+..+.+.        +|.+.|.++---..-.+++|+.|.+|++||++-..++.++.
T Consensus       150 s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~  221 (350)
T KOG0641|consen  150 SGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD  221 (350)
T ss_pred             cCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence              567888765 7788999999999998887        79998988754433399999999999999999888887764


Q ss_pred             c--c-----ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeecc
Q 004581          219 F--H-----KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP  291 (744)
Q Consensus       219 ~--h-----~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  291 (744)
                      .  |     ...|.+++..|.|++|++|-.|....+||++.+.                 .++.+..|+.+|+++.|+  
T Consensus       222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----------------~iq~f~phsadir~vrfs--  282 (350)
T KOG0641|consen  222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----------------MIQRFHPHSADIRCVRFS--  282 (350)
T ss_pred             CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----------------eeeeeCCCccceeEEEeC--
Confidence            2  2     3579999999999999999999999999999987                 478889999999999997  


Q ss_pred             CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                             |..                        .++++++.|..|++-|+..
T Consensus       283 -------p~a------------------------~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  283 -------PGA------------------------HYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             -------CCc------------------------eEEEEecccceEEEeeccc
Confidence                   333                        3999999999999998864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=198.36  Aligned_cols=235  Identities=17%  Similarity=0.229  Sum_probs=195.0

Q ss_pred             CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      +.++.++|+||.|-+|.|||+.+.+++..+-.|.+.|+++.|.+.-..                                
T Consensus        50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~--------------------------------   97 (362)
T KOG0294|consen   50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSK--------------------------------   97 (362)
T ss_pred             EecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcch--------------------------------
Confidence            346778999999999999999999999999999999999999997621                                


Q ss_pred             CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581           82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL  161 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~  161 (744)
                                      ..|.+|++||.|.+|+...-+.+   ..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+
T Consensus        98 ----------------shLlS~sdDG~i~iw~~~~W~~~---~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   98 ----------------SHLLSGSDDGHIIIWRVGSWELL---KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             ----------------hheeeecCCCcEEEEEcCCeEEe---eeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence                            27999999999999998755444   99999999999999999999999999999999999999


Q ss_pred             CceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581          162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTG  240 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~  240 (744)
                      |+.-..+..       .+.  -..+.|+|.| +++.+..+ .|-+|.+++......+.. ...+.|+.|.. +..|++|+
T Consensus       159 Gr~a~v~~L-------~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~  226 (362)
T KOG0294|consen  159 GRVAFVLNL-------KNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGG  226 (362)
T ss_pred             Cccceeecc-------CCc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEec
Confidence            998777764       232  3339999999 67766654 599999987766655554 36688888874 56899999


Q ss_pred             CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccc
Q 004581          241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW  320 (744)
Q Consensus       241 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  320 (744)
                      .|+.|.+||.+...                 +...+.+|...|.++.+..                              
T Consensus       227 d~~~i~~~D~ds~~-----------------~~~~~~AH~~RVK~i~~~~------------------------------  259 (362)
T KOG0294|consen  227 DNEWISLKDTDSDT-----------------PLTEFLAHENRVKDIASYT------------------------------  259 (362)
T ss_pred             CCceEEEeccCCCc-----------------cceeeecchhheeeeEEEe------------------------------
Confidence            99999999998755                 3678899999999998631                              


Q ss_pred             ccCCCcEEEEecCCCeEEEEecCccCC
Q 004581          321 AHLGVPMLISAGDDTKLFAYCANEFTK  347 (744)
Q Consensus       321 ~~~~~~~l~s~~~d~~i~~~~~~~~~~  347 (744)
                       .+...+|++++.||.|++||++....
T Consensus       260 -~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  260 -NPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             -cCCceEEEEeccCceEEEEEcccccc
Confidence             22334999999999999999987543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=3.2e-24  Score=207.43  Aligned_cols=160  Identities=11%  Similarity=0.162  Sum_probs=123.5

Q ss_pred             EcCCCCEEEE---EcCCceEEEEeecCCCCCceEEeeeccCCccc--ccccEEEEee-CCCEEEEEeCCCcEEEEEccCC
Q 004581          426 ISNSGMLFAY---SDHVKPSLFELKKGKVGQGEWIINKRQLPRKL--QFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSS  499 (744)
Q Consensus       426 ~s~~g~~la~---~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~~~  499 (744)
                      |..+.+.+|+   +..|.|-||+++...   ++   ....+++..  ..|+.+.|.| |..+||+++.||.|++|.+..+
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PG---rL---PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPG---RL---PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCC---CC---CcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            4556677877   578899999998621   11   112233222  2688999998 8899999999999999999654


Q ss_pred             ceeeeeccCcccccccCCCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581          500 ELLHTFTPCREEHDREIQPSEPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV  578 (744)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  578 (744)
                      -+-....    ..+..+..|...|+++.|+| -...||++++|.+|++||+.+++....+.+ |.+.|..++||| ||+.
T Consensus       661 gl~e~~~----tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSp-dGr~  734 (1012)
T KOG1445|consen  661 GLPENEM----TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSP-DGRR  734 (1012)
T ss_pred             CCCcccC----CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECC-CCcc
Confidence            2211111    11122333899999999999 456899999999999999999998888865 778999999999 9999


Q ss_pred             EEEEecCCeEEEEEcCCCc
Q 004581          579 LIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       579 l~~~~~d~~v~vwd~~~~~  597 (744)
                      +|+.+.||+|++|+-..++
T Consensus       735 ~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  735 IATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             eeeeecCceEEEeCCCCCC
Confidence            9999999999999998875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.6e-24  Score=188.91  Aligned_cols=290  Identities=15%  Similarity=0.196  Sum_probs=217.5

Q ss_pred             CCeEEEEecCCeEEEEEecCCCc-----eeE-------eecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCc
Q 004581           97 DRRVALACDDGCVRIYRITDSDE-----LIY-------HRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~-----~~~-------~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                      ++++++|+.||.|.+||++....     +..       ...-.+|+-.|.++.|-| |..++.+++.|.+++|||..+.+
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ  135 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ  135 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence            37999999999999999984321     111       112246888999999998 44577888899999999999999


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCC----eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE-EEe
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCG----TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR-VFS  238 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~~  238 (744)
                      ....++         .+..|++-+++|-.    ++++|..+-.|++-|+.+|..-.++.+|.+.|.++.|+|...+ |++
T Consensus       136 ~a~~F~---------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLat  206 (397)
T KOG4283|consen  136 EAVDFK---------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLAT  206 (397)
T ss_pred             eeEEee---------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEe
Confidence            888886         67889998998854    6888888999999999999999999999999999999998765 567


Q ss_pred             ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581          239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH  318 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (744)
                      |+.||.|++||++...                                                                
T Consensus       207 gsaDg~irlWDiRras----------------------------------------------------------------  222 (397)
T KOG4283|consen  207 GSADGAIRLWDIRRAS----------------------------------------------------------------  222 (397)
T ss_pred             cCCCceEEEEEeeccc----------------------------------------------------------------
Confidence            8999999999987642                                                                


Q ss_pred             ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581          319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR  398 (744)
Q Consensus       319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~  398 (744)
                                      |.+++.|..+.+..                                                  
T Consensus       223 ----------------gcf~~lD~hn~k~~--------------------------------------------------  236 (397)
T KOG4283|consen  223 ----------------GCFRVLDQHNTKRP--------------------------------------------------  236 (397)
T ss_pred             ----------------ceeEEeecccCccC--------------------------------------------------
Confidence                            11111222111000                                                  


Q ss_pred             CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee
Q 004581          399 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY  477 (744)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp  477 (744)
                                ...+....|.+.+..+||+.+|.++++ +.+..+++|+...+....+.+-.....-..+. .+. +. +.
T Consensus       237 ----------p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~-~~~-~~-~~  303 (397)
T KOG4283|consen  237 ----------PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSF-AVH-IQ-SM  303 (397)
T ss_pred             ----------ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccc-eEE-Ee-ec
Confidence                      111122345688999999999999888 79999999999885554432111111101111 111 22 44


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581          478 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       478 d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~  549 (744)
                      +...++.--.++.+.++.+-+++.++.+..           |-..|.+.++-|+=+.+.+++.|+.|..|-.
T Consensus       304 ~s~vfv~~p~~~~lall~~~sgs~ir~l~~-----------h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  304 DSDVFVLFPNDGSLALLNLLEGSFVRRLST-----------HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccceEEEEecCCeEEEEEccCceEEEeeec-----------ccceeeEEeecCchhhhhccccCCccccccc
Confidence            555555556678999999999999999998           8889999999999999999999999999976

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.93  E-value=9.8e-24  Score=205.32  Aligned_cols=470  Identities=15%  Similarity=0.159  Sum_probs=301.8

Q ss_pred             CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      .|+|..|+.+.. ..+.+||++.|.++.++++|...|.|+|++.||+.+|+|++   ++.+++|..+..+        ..
T Consensus        21 kPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG--------~L   88 (1081)
T KOG1538|consen   21 KPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEG--------IL   88 (1081)
T ss_pred             CCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccc--------ee
Confidence            467777777664 57999999999999999999999999999999987766533   3445555555322        22


Q ss_pred             CCCCcccccccccccCC-eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581           82 NDSDSDELHEQSVVEDR-RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~  160 (744)
                      ...++..+.|+.+++-+ .||+++ =...-+|........    . ..-..+|.+++|..||++|+.|-.+|+|.+-+- 
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCs-LsdFglWS~~qK~V~----K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-  161 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCS-LSDFGLWSPEQKSVS----K-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-  161 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcc-hhhccccChhhhhHH----h-hhhheeEEEeeecCCCcEEEEeccCceEEeecC-
Confidence            33445555555555433 344333 344556665421111    0 112357888999999999999999999999874 


Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCC------eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG------TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN  234 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  234 (744)
                      +|+....+.-+.     +...+||+++|+|..      .++..+...++.++.+. |+.+..-+.-.-.-.|+.+.++|.
T Consensus       162 ~gEek~~I~Rpg-----g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE  235 (1081)
T KOG1538|consen  162 NGEEKVKIERPG-----GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE  235 (1081)
T ss_pred             CCCcceEEeCCC-----CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc
Confidence            666666665321     577899999999864      68888999999999987 777765555556678999999999


Q ss_pred             EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcc
Q 004581          235 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID  314 (744)
Q Consensus       235 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (744)
                      +++.||.|+.+.+|..+.-.                  +.++-...+.|.+++..         |++             
T Consensus       236 y~LiGGsdk~L~~fTR~Gvr------------------LGTvg~~D~WIWtV~~~---------PNs-------------  275 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFTRDGVR------------------LGTVGEQDSWIWTVQAK---------PNS-------------  275 (1081)
T ss_pred             EEEEccCCCceEEEeecCeE------------------EeeccccceeEEEEEEc---------cCC-------------
Confidence            99999999999999876643                  44555566778888874         444             


Q ss_pred             ccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc-cCC-----------------CCCCCccccccceeecCCeEE
Q 004581          315 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE-ICP-----------------APQRVPIHLVHNTIFSHTSLL  376 (744)
Q Consensus       315 ~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~v~~~~~s~~~~~  376 (744)
                                 +.++.|+.||+|..|++...+...... ...                 .......+.|..+++- +.++
T Consensus       276 -----------Q~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY-rnrL  343 (1081)
T KOG1538|consen  276 -----------QYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY-RNRL  343 (1081)
T ss_pred             -----------ceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh-hhhh
Confidence                       499999999999999885422110000 000                 0000011222222222 2233


Q ss_pred             EEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceE
Q 004581          377 LVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEW  456 (744)
Q Consensus       377 l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~  456 (744)
                      .+.-+..+.+|.+.......            .-+++...-.....+.-+--.+..++.+.+..+..+|+..  -..+.|
T Consensus       344 AVQLpeki~iYel~se~~~~------------mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~G--vk~ReW  409 (1081)
T KOG1538|consen  344 AVQLPEKILIYELYSEDLSD------------MHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSG--VKEREW  409 (1081)
T ss_pred             eecccceEEEEecccccccc------------chhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccc--hhhhhh
Confidence            34445677777766443221            1111110001111121122235677778888888888763  222344


Q ss_pred             EeeeccCCcccccccEEEE--ee-CCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCC
Q 004581          457 IINKRQLPRKLQFAHSMIF--SY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ  533 (744)
Q Consensus       457 ~~~~~~~~~~~~~v~~i~~--sp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  533 (744)
                      .++..        |+-+..  -| ...-|+.|..+|.|.-.=+.+.-++-...            ....|.++.++...+
T Consensus       410 ~M~S~--------iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~------------~~tAvrClDINA~R~  469 (1081)
T KOG1538|consen  410 QMESL--------IRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK------------QATAVRCLDINASRK  469 (1081)
T ss_pred             hHHHH--------HHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec------------ccceeEEeeccCCcc
Confidence            44331        111111  12 34467888888877655455443333333            367799999999999


Q ss_pred             EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeE
Q 004581          534 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV  588 (744)
Q Consensus       534 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v  588 (744)
                      .||+.+..++..++|+.+++....-+     .+.+++|+.+..++|...+. |.+
T Consensus       470 kLAvVDD~~~c~v~DI~t~elL~QEp-----g~nSV~wNT~~E~MlcfT~~-g~L  518 (1081)
T KOG1538|consen  470 KLAVVDDNDTCLVYDIDTKELLFQEP-----GANSVAWNTQCEDMLCFTGG-GYL  518 (1081)
T ss_pred             eEEEEccCCeEEEEEccCCceEeecC-----CCceEEeeccccceEEEecC-Cce
Confidence            99999999999999999998754443     57889999866677766655 544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.5e-24  Score=188.77  Aligned_cols=278  Identities=17%  Similarity=0.196  Sum_probs=211.4

Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      .....|.++.|+|.+ .|++++.||.+++||.....+...++ |..++++++|.++ ..+++|+.||.|+.+|+.++.  
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--   86 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--   86 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--
Confidence            457889999999887 88888899999999999876666665 7899999999874 579999999999999999987  


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                      ...+..|...|+++..+         +                        ....+++||.|++
T Consensus        87 ----------------~~~igth~~~i~ci~~~---------~------------------------~~~~vIsgsWD~~  117 (323)
T KOG1036|consen   87 ----------------EDQIGTHDEGIRCIEYS---------Y------------------------EVGCVISGSWDKT  117 (323)
T ss_pred             ----------------ceeeccCCCceEEEEee---------c------------------------cCCeEEEcccCcc
Confidence                            45667899999999986         2                        2238999999999


Q ss_pred             EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK  416 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (744)
                      |++||.+........                                                                .
T Consensus       118 ik~wD~R~~~~~~~~----------------------------------------------------------------d  133 (323)
T KOG1036|consen  118 IKFWDPRNKVVVGTF----------------------------------------------------------------D  133 (323)
T ss_pred             EEEEecccccccccc----------------------------------------------------------------c
Confidence            999999852111000                                                                0


Q ss_pred             CCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581          417 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d  495 (744)
                      ....|.++..  .|..|++ +.+..+.+||+++-+....      ..-....-.++++++-|++.-.++++-||.|.+=.
T Consensus       134 ~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q------~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~  205 (323)
T KOG1036|consen  134 QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ------RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY  205 (323)
T ss_pred             cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh------hccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence            0123444333  3555555 6899999999986322221      11111222789999999999999999999999877


Q ss_pred             ccCC----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581          496 VSSS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF  571 (744)
Q Consensus       496 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~  571 (744)
                      ++..    +....|+.|+.....  ...--+|++|+|+|-.+.||||+.||.|.+||+.+.+.+..+.... ..|.+++|
T Consensus       206 ~d~s~~~~skkyaFkCHr~~~~~--~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~-~SI~slsf  282 (323)
T KOG1036|consen  206 FDDSEEAQSKKYAFKCHRLSEKD--TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE-TSISSLSF  282 (323)
T ss_pred             cCCchHHhhhceeEEeeecccCC--ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC-CceEEEEe
Confidence            7654    455667775432111  1123469999999999999999999999999999999888887763 57999999


Q ss_pred             cCCCCCeEEEEec
Q 004581          572 PPQNNNVLIITTS  584 (744)
Q Consensus       572 sp~~~~~l~~~~~  584 (744)
                      +. ||..||+++.
T Consensus       283 s~-dG~~LAia~s  294 (323)
T KOG1036|consen  283 SM-DGSLLAIASS  294 (323)
T ss_pred             cc-CCCeEEEEec
Confidence            99 9999999975

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=4e-24  Score=205.73  Aligned_cols=317  Identities=17%  Similarity=0.165  Sum_probs=233.0

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG  201 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg  201 (744)
                      ..+.+|++.|.|+...|.|.+|++|+.||+|+||.+.+|++++++.         ....|.|++|+|.+  -+++.....
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------~d~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------FDSEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------ecceeEEEEecCCCCceeEEEEecC
Confidence            5677999999999999999999999999999999999999999997         56689999999988  344444444


Q ss_pred             CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEee----cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeee
Q 004581          202 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST----GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR  277 (744)
Q Consensus       202 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (744)
                      .+.|-+..-|..+....             ....|+++    ..|+.+..|.-........             -++..-
T Consensus       465 ~~~ivnp~~G~~~e~~~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~-------------~v~~~I  518 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGP-------------TKELLASAPNESEPDAAVVTWSRASLDELEK-------------GVCIVI  518 (733)
T ss_pred             ceEEeCccccchhhhcc-------------hhhhhhcCCCccCCcccceeechhhhhhhcc-------------ceEEEE
Confidence            57777766553332111             01112221    2366788997664332110             144556


Q ss_pred             eccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC---eEEEEecCccCCCCCcccC
Q 004581          278 AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT---KLFAYCANEFTKFSPHEIC  354 (744)
Q Consensus       278 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~---~i~~~~~~~~~~~~~~~~~  354 (744)
                      .|...|+.+.|.                                 ..+++|++...++   .|.++++.......++   
T Consensus       519 ~~~k~i~~vtWH---------------------------------rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF---  562 (733)
T KOG0650|consen  519 KHPKSIRQVTWH---------------------------------RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF---  562 (733)
T ss_pred             ecCCccceeeee---------------------------------cCCceEEEeccCCCcceEEEEecccccccCch---
Confidence            788889999884                                 4555888876654   6666666542211110   


Q ss_pred             CCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEE
Q 004581          355 PAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFA  434 (744)
Q Consensus       355 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la  434 (744)
                                                                                  ....+.+.++.|+|...++.
T Consensus       563 ------------------------------------------------------------~kskG~vq~v~FHPs~p~lf  582 (733)
T KOG0650|consen  563 ------------------------------------------------------------RKSKGLVQRVKFHPSKPYLF  582 (733)
T ss_pred             ------------------------------------------------------------hhcCCceeEEEecCCCceEE
Confidence                                                                        01236688899999999999


Q ss_pred             EEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-CCceeeeeccCccccc
Q 004581          435 YSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-SSELLHTFTPCREEHD  513 (744)
Q Consensus       435 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~  513 (744)
                      +++...|++|++..   ...+     .++......+..++.+|.|.-|++++.|+.+..||++ +.++.+++..      
T Consensus       583 VaTq~~vRiYdL~k---qelv-----KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~------  648 (733)
T KOG0650|consen  583 VATQRSVRIYDLSK---QELV-----KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL------  648 (733)
T ss_pred             EEeccceEEEehhH---HHHH-----HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh------
Confidence            99999999999975   2211     3344445589999999999999999999999999997 4467777777      


Q ss_pred             ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC------CcceEEEEe--cCCC----CceeEEeecCCCCCeEEE
Q 004581          514 REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE------IQRQHWFIS--RLEG----ASVTAAGFPPQNNNVLII  581 (744)
Q Consensus       514 ~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~------~~~~~~~~~--~~~~----~~v~~l~~sp~~~~~l~~  581 (744)
                           |...+++++|++.-.++|+|+.||++.||.-.      ....+..++  ..|.    ..|....|+| ...+|++
T Consensus       649 -----H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfs  722 (733)
T KOG0650|consen  649 -----HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFS  722 (733)
T ss_pred             -----hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEe
Confidence                 89999999999999999999999999998542      222222222  1232    3488889999 9999999


Q ss_pred             EecCCeEEEE
Q 004581          582 TTSSNQVYVF  591 (744)
Q Consensus       582 ~~~d~~v~vw  591 (744)
                      ++.||+|++|
T Consensus       723 AGAd~tirlf  732 (733)
T KOG0650|consen  723 AGADGTIRLF  732 (733)
T ss_pred             cCCCceEEee
Confidence            9999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.3e-24  Score=198.69  Aligned_cols=282  Identities=17%  Similarity=0.224  Sum_probs=210.4

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG  176 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (744)
                      ..|.+++-||+++||.+. ++.-..++.+.--..+|.+.+|.|+|. .+++++....+..||+++++....-.. . +  
T Consensus       226 plllvaG~d~~lrifqvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~-g--  300 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIFQVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-Y-G--  300 (514)
T ss_pred             ceEEEecCCCcEEEEEec-CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC-C-C--
Confidence            689999999999999997 433333355555678999999999999 899999999999999988765433221 1 0  


Q ss_pred             CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581          177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI  255 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~  255 (744)
                       .....+.....++++ .|+..+..|.|.+....+++.+.+++. .+.|..++|+.+++.|++++.+|.|.+||++....
T Consensus       301 -~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~  378 (514)
T KOG2055|consen  301 -VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC  378 (514)
T ss_pred             -cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence             123456677888999 899999999999999999999999986 78899999999999999999999999999987531


Q ss_pred             CCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC
Q 004581          256 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT  335 (744)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~  335 (744)
                                       +..+                                                       -.||
T Consensus       379 -----------------~~rf-------------------------------------------------------~D~G  386 (514)
T KOG2055|consen  379 -----------------LHRF-------------------------------------------------------VDDG  386 (514)
T ss_pred             -----------------EEEE-------------------------------------------------------eecC
Confidence                             1100                                                       0011


Q ss_pred             eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe
Q 004581          336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS  415 (744)
Q Consensus       336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (744)
                      .                                                                               
T Consensus       387 ~-------------------------------------------------------------------------------  387 (514)
T KOG2055|consen  387 S-------------------------------------------------------------------------------  387 (514)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             cCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC--CCcEE
Q 004581          416 KASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH--DRRIY  492 (744)
Q Consensus       416 ~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~--dg~i~  492 (744)
                         -.-+++|.|++|.++|+| ..|.|.||+.+.--....-  .+...+......|+++.|++|++.||.++.  +..++
T Consensus       388 ---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P--kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalr  462 (514)
T KOG2055|consen  388 ---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP--KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALR  462 (514)
T ss_pred             ---cceeeeeecCCCceEEeccCcceEEEeccchhhccCCC--CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceE
Confidence               112455677777888885 5566777775431100000  000222233348999999999999998876  67899


Q ss_pred             EEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          493 VVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       493 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      +..+.+......|.....        .-+.|++++|||.|.+||.|..+|.|.+|.+.
T Consensus       463 LVHvPS~TVFsNfP~~n~--------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  463 LVHVPSCTVFSNFPTSNT--------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEeccceeeeccCCCCCC--------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            999988777777765322        45679999999999999999999999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.6e-25  Score=186.87  Aligned_cols=237  Identities=24%  Similarity=0.294  Sum_probs=190.3

Q ss_pred             CCCCeeEEecCCCeEEEEEccCC---ceeEEeeccCcceeEEeecc--CCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDL---KQKIVLQSIDFSIWQMAVAP--SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~h~~~i~~v~~sp--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      .-|.|||+++.|++|+|+.+...   +++.+|.||.++|+.++|..  .|                              
T Consensus        21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G------------------------------   70 (299)
T KOG1332|consen   21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG------------------------------   70 (299)
T ss_pred             hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC------------------------------
Confidence            35889999999999999999753   56789999999999999976  44                              


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC--CCEEEEEeCCCeEE
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD--GNMLYSGSSDGYIR  155 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d--g~~l~t~~~dg~i~  155 (744)
                                          .+||+++.||.|.||.-+++ ..........|...|++++|.|.  |-.|++++.||.|.
T Consensus        71 --------------------~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen   71 --------------------TILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             --------------------cEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence                                69999999999999998755 55444777899999999999886  56899999999999


Q ss_pred             EEEccCC--ceEEEEEecCCCCCCCCceeEEEEEEecC---C------------eEEEEcCCCCEEEEeCCCcce--EEE
Q 004581          156 SWDAKLG--YEIYRITVGLGGLGSGPELCIWSLLSLRC---G------------TLVSADSTGSVQFWDSRHGTL--LQA  216 (744)
Q Consensus       156 vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~------------~l~s~~~dg~i~vwd~~~~~~--~~~  216 (744)
                      |.+.++.  -...++..       .|.-.|.+++|.|.   |            +|++|+.|+.|+||+...++.  -++
T Consensus       130 vl~~~~~g~w~t~ki~~-------aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~  202 (299)
T KOG1332|consen  130 VLTYDSSGGWTTSKIVF-------AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT  202 (299)
T ss_pred             EEEEcCCCCccchhhhh-------ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh
Confidence            9988654  22223322       68889999999885   1            599999999999999987643  356


Q ss_pred             eeccccceeEEEEcCCC----CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581          217 HSFHKGDVNALAAAPSH----NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI  292 (744)
Q Consensus       217 ~~~h~~~v~~l~~~~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  292 (744)
                      +.+|.+-|..++|.|.-    .+|++++.||++.||..+...             ..|. ...+......+..+.++   
T Consensus       203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-------------e~wk-~tll~~f~~~~w~vSWS---  265 (299)
T KOG1332|consen  203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-------------EPWK-KTLLEEFPDVVWRVSWS---  265 (299)
T ss_pred             hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-------------Cccc-ccccccCCcceEEEEEe---
Confidence            89999999999999964    589999999999999887432             2332 23334455667888886   


Q ss_pred             CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                            ..|                        +.|+.++.|..+.+|....
T Consensus       266 ------~sG------------------------n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  266 ------LSG------------------------NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ------ccc------------------------cEEEEecCCcEEEEEEeCC
Confidence                  333                        4899999999999997654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-22  Score=205.34  Aligned_cols=463  Identities=13%  Similarity=0.152  Sum_probs=302.8

Q ss_pred             CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      ++.+.+.+..+..|.||...||.++..+..|..++..+.+.|....+                                 
T Consensus        26 nD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~---------------------------------   72 (792)
T KOG1963|consen   26 NDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENA---------------------------------   72 (792)
T ss_pred             cCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccc---------------------------------
Confidence            34554445556799999999999999999999999999999987532                                 


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccC-----------c--------------------
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSG-----------R--------------------  132 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~--------------------  132 (744)
                                    .++.+++-||.|++||...+..+   +++..+..           .                    
T Consensus        73 --------------~~~~~~sl~G~I~vwd~~~~~Ll---kt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~  135 (792)
T KOG1963|consen   73 --------------NYLIVCSLDGTIRVWDWSDGELL---KTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSK  135 (792)
T ss_pred             --------------eEEEEEecCccEEEecCCCcEEE---EEEecCCceeEEEechhHhCccceeEeecccceeeeeccc
Confidence                          36778888888888888755443   11111000           0                    


Q ss_pred             ---------------------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581          133 ---------------------------VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS  185 (744)
Q Consensus       133 ---------------------------V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (744)
                                                 =.++.+++.|.+.+.. .+..+.+|++.++. .....   ......|.-.+.+
T Consensus       136 ~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~---~~~~~~Htf~~t~  210 (792)
T KOG1963|consen  136 KLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSS---RDITVHHTFNITC  210 (792)
T ss_pred             ccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccc-eeecc---chhhhhhccccee
Confidence                                       1223333334333332 23467777776654 11111   1112246666899


Q ss_pred             EEEecCC-eEEEEcCCCCEEEEeCCC----cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCC
Q 004581          186 LLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG  260 (744)
Q Consensus       186 ~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  260 (744)
                      .+++|++ .+++|..||.|.+|.--.    ....+.++-|...|.+++|+++|.+|++||..+.+.+|.+.++.      
T Consensus       211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~------  284 (792)
T KOG1963|consen  211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK------  284 (792)
T ss_pred             EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC------
Confidence            9999999 899999999999996332    22346778899999999999999999999999999999999876      


Q ss_pred             CCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 004581          261 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY  340 (744)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~  340 (744)
                                  .+.+..-...|..+.++         ||+.                        +......|..|.+.
T Consensus       285 ------------kqfLPRLgs~I~~i~vS---------~ds~------------------------~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  285 ------------KQFLPRLGSPILHIVVS---------PDSD------------------------LYSLVLEDNQIHLI  319 (792)
T ss_pred             ------------cccccccCCeeEEEEEc---------CCCC------------------------eEEEEecCceEEEE
Confidence                        24456667889999997         5554                        67777779999988


Q ss_pred             ecCccCCCCCcccCCCC----CCCccccccceeecCC-eE-EEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581          341 CANEFTKFSPHEICPAP----QRVPIHLVHNTIFSHT-SL-LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK  414 (744)
Q Consensus       341 ~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~-~~-~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (744)
                      .+.+............+    ...+....+.++++|. +. .+....+.+++|++.....               ++++.
T Consensus       320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~---------------i~~~~  384 (792)
T KOG1963|consen  320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST---------------IYKLQ  384 (792)
T ss_pred             eccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccce---------------eeeEE
Confidence            87654332221111111    3335567778888883 22 3344567999999886652               22222


Q ss_pred             e----------cCCCCeEEEEEcCCCCEEEEEc-----------CCceEEEEeecCCCCCceEEeeeccCCcccccccEE
Q 004581          415 S----------KASRKIICSTISNSGMLFAYSD-----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSM  473 (744)
Q Consensus       415 ~----------~~~~~i~~~~~s~~g~~la~~~-----------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  473 (744)
                      .          .....+++++.+..|.++++..           .-.+++|....   ..+-|.+.+.....|...+...
T Consensus       385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~---~~kt~~L~T~I~~PH~~~~vat  461 (792)
T KOG1963|consen  385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP---NSKTFILNTKINNPHGNAFVAT  461 (792)
T ss_pred             EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC---CcceeEEEEEEecCCCceeEEE
Confidence            1          1124577888888999998742           23567888765   4455666665555555544444


Q ss_pred             EE-eeCCC-EEEEEeCCCcEEEEEccCCceeee------eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEE
Q 004581          474 IF-SYDSS-QLIIAGHDRRIYVVDVSSSELLHT------FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY  545 (744)
Q Consensus       474 ~~-spd~~-~l~~~~~dg~i~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~  545 (744)
                      +| ++... ..++++.||.++||-+.+.+-+..      ....       -.-|..++++++||.||..||.+ .+++|.
T Consensus       462 ~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-------~sy~k~~i~a~~fs~dGslla~s-~~~~It  533 (792)
T KOG1963|consen  462 IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-------GSYHKTPITALCFSQDGSLLAVS-FDDTIT  533 (792)
T ss_pred             EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-------eccccCcccchhhcCCCcEEEEe-cCCEEE
Confidence            44 33333 899999999999999843321111      1000       00168899999999999766655 788999


Q ss_pred             EEECCCcceEEEEecCCCCceeEEeecCC-CCCeEEEEecCCeEEEEEcCCCcc
Q 004581          546 IFNLEIQRQHWFISRLEGASVTAAGFPPQ-NNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       546 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                      +||..+...+....+....++..+.|..+ -....++......+.+||+.+..+
T Consensus       534 iwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l  587 (792)
T KOG1963|consen  534 IWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL  587 (792)
T ss_pred             EecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence            99999843222222323344444444320 112334445567899999988765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-24  Score=202.39  Aligned_cols=307  Identities=16%  Similarity=0.165  Sum_probs=221.7

Q ss_pred             EEEEecCC-eEEEEEecCCCceeEeecccCc-cCcEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceEEEEEecCCCCC
Q 004581          100 VALACDDG-CVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLG  176 (744)
Q Consensus       100 la~~~~dg-~i~iwd~~~~~~~~~~~~~~~h-~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (744)
                      +.+++.|. .+.+||+.+|..+   ..+++- ...-.++..- .+.+++++.. ...|.+|.+..........       
T Consensus        10 ~sssS~d~~~~~~~dl~TGt~~---~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-------   78 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGTSL---LQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-------   78 (476)
T ss_pred             EeccCCCCcceeEEecCCCcee---EEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-------
Confidence            33444454 4999999988766   334332 1111111111 2356666654 4579999986655444222       


Q ss_pred             CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581          177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI  255 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~  255 (744)
                       -..+.|.+++-+|+| +|+.|+..|.|.+|.+.+|.++..+.+|-..|+|+.|+.||.+|++||.||.|.+|.+..--.
T Consensus        79 -v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   79 -VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             -ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence             367789999999999 566666999999999999999999999999999999999999999999999999999875332


Q ss_pred             CCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC
Q 004581          256 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT  335 (744)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~  335 (744)
                      ...+        ..-.+...+..|+-.|+.+.+.         +.+                      ...+|++++.|.
T Consensus       158 a~~~--------~~~~p~~~f~~HtlsITDl~ig---------~Gg----------------------~~~rl~TaS~D~  198 (476)
T KOG0646|consen  158 ADND--------HSVKPLHIFSDHTLSITDLQIG---------SGG----------------------TNARLYTASEDR  198 (476)
T ss_pred             cccC--------CCccceeeeccCcceeEEEEec---------CCC----------------------ccceEEEecCCc
Confidence            1111        1233467788999999999885         111                      123899999999


Q ss_pred             eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe
Q 004581          336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS  415 (744)
Q Consensus       336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (744)
                      ++++||+....                                                              .+..+..
T Consensus       199 t~k~wdlS~g~--------------------------------------------------------------LLlti~f  216 (476)
T KOG0646|consen  199 TIKLWDLSLGV--------------------------------------------------------------LLLTITF  216 (476)
T ss_pred             eEEEEEeccce--------------------------------------------------------------eeEEEec
Confidence            99999997532                                                              1222222


Q ss_pred             cCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCc--------eEEeeeccCCcccc--cccEEEEeeCCCEEEE
Q 004581          416 KASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQG--------EWIINKRQLPRKLQ--FAHSMIFSYDSSQLII  484 (744)
Q Consensus       416 ~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~--------~~~~~~~~~~~~~~--~v~~i~~spd~~~l~~  484 (744)
                        ...+.+++++|-+..+.+| .+|.|.+.++..-.+...        ....+...+.+|..  .|+|++++-||..|++
T Consensus       217 --p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS  294 (476)
T KOG0646|consen  217 --PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS  294 (476)
T ss_pred             --CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence              2667888888888877775 778887777654221110        11122244556666  8999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCC
Q 004581          485 AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG  532 (744)
Q Consensus       485 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg  532 (744)
                      |+.||.|+|||+.+.++++++..           ..++|+.+.+.|-.
T Consensus       295 Gd~dg~VcvWdi~S~Q~iRtl~~-----------~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSKQCIRTLQT-----------SKGPVTNLQINPLE  331 (476)
T ss_pred             eCCCCCEEEEecchHHHHHHHhh-----------hccccceeEeeccc
Confidence            99999999999999999999985           58899999986643

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=4.7e-24  Score=199.37  Aligned_cols=246  Identities=15%  Similarity=0.208  Sum_probs=193.6

Q ss_pred             eeEEecCCCeEEEEEccCC----------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581            7 RLFSSSIDGSVSEWDLYDL----------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE   76 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~----------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (744)
                      .+|+.+..+.|.|||..+-          .+..+|.+|...=..++|++...                            
T Consensus       139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~----------------------------  190 (422)
T KOG0264|consen  139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE----------------------------  190 (422)
T ss_pred             EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc----------------------------
Confidence            3677889999999998642          22237889988777888888763                            


Q ss_pred             CccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCC----ceeEeecccCccCcEEEEEEecC-CCEEEEEeCC
Q 004581           77 TSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD----ELIYHRSLPRVSGRVLSVTWSAD-GNMLYSGSSD  151 (744)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~V~~~~~s~d-g~~l~t~~~d  151 (744)
                                           .+|++++.|+.|++||+....    .+.....+.+|+..|..++|++- ...+++++.|
T Consensus       191 ---------------------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  191 ---------------------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             ---------------------eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence                                 489999999999999998433    24555788999999999999984 5578899999


Q ss_pred             CeEEEEEccC--CceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeE
Q 004581          152 GYIRSWDAKL--GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNA  226 (744)
Q Consensus       152 g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~  226 (744)
                      +.+.|||+++  .+......        +|...|+|++|+|-+  .|++|+.|++|++||++. .+++.++.+|...|.+
T Consensus       250 ~~L~iwD~R~~~~~~~~~~~--------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~  321 (422)
T KOG0264|consen  250 GKLMIWDTRSNTSKPSHSVK--------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ  321 (422)
T ss_pred             CeEEEEEcCCCCCCCccccc--------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence            9999999995  33333333        799999999999977  789999999999999997 5678999999999999


Q ss_pred             EEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccc
Q 004581          227 LAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKR  305 (744)
Q Consensus       227 l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~  305 (744)
                      +.|+|.. ..|++++.|+.+.+||+..-.....   ........-..+..-.||...|..+.|+         |...   
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~---~eda~dgppEllF~HgGH~~kV~DfsWn---------p~eP---  386 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS---PEDAEDGPPELLFIHGGHTAKVSDFSWN---------PNEP---  386 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEeccccccccC---hhhhccCCcceeEEecCcccccccccCC---------CCCC---
Confidence            9999975 6777889999999999986432110   0111122233456668899999999886         3332   


Q ss_pred             cCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          306 SRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       306 ~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                                    |      .++|.+.|+.+.+|.+..
T Consensus       387 --------------W------~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  387 --------------W------TIASVAEDNILQIWQMAE  405 (422)
T ss_pred             --------------e------EEEEecCCceEEEeeccc
Confidence                          2      899999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.8e-22  Score=201.75  Aligned_cols=184  Identities=12%  Similarity=0.148  Sum_probs=141.7

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      ..+++++.|+.|.+||+.+++.+..+..+. .+.+++|+|+++                                     
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~-------------------------------------   43 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGK-------------------------------------   43 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCC-------------------------------------
Confidence            457889999999999999999999888654 478899999993                                     


Q ss_pred             cccccccccccCCeE-EEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCCeEEEEEccCCc
Q 004581           86 SDELHEQSVVEDRRV-ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKLGY  163 (744)
Q Consensus        86 ~~~~~~~~~~~~~~l-a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg~i~vwd~~~~~  163 (744)
                                   .+ ++++.++.|++||..+++..   ..+..+.. +..++|+|+++.|+++ +.++.|++||+.+++
T Consensus        44 -------------~l~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        44 -------------LLYVCASDSDTIQVIDLATGEVI---GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             -------------EEEEEECCCCeEEEEECCCCcEE---EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence                         44 56778999999999866554   44444433 5678999999987655 568999999999888


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC-CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEee-c
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG-SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST-G  240 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg-~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~-~  240 (744)
                      .+..+.         ....+.+++|+|++ .++++..++ .+.+||..+++.+..+.. .....+++|+|++++|+++ .
T Consensus       107 ~~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       107 VLAEIP---------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEeEee---------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence            777665         22345779999999 666666654 577889988877665543 3456789999999988655 4


Q ss_pred             CCCeEEEEEcccCc
Q 004581          241 SDGQVILYKASCES  254 (744)
Q Consensus       241 ~dg~i~iw~~~~~~  254 (744)
                      .++.|++||+.++.
T Consensus       177 ~~~~v~i~d~~~~~  190 (300)
T TIGR03866       177 IGGTVSVIDVATRK  190 (300)
T ss_pred             CCCEEEEEEcCcce
Confidence            58999999987644

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=196.24  Aligned_cols=283  Identities=16%  Similarity=0.159  Sum_probs=211.7

Q ss_pred             ecCC-CeEEEEEccCCceeEEeeccCc-ce-eEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcc
Q 004581           11 SSID-GSVSEWDLYDLKQKIVLQSIDF-SI-WQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD   87 (744)
Q Consensus        11 ~~~d-~~i~iwd~~~~~~~~~~~~h~~-~i-~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (744)
                      ++.| ..+.+||+.||....++++-.. .- .+-++.+  .+++++..  ....+-+|...++....     ...-..++
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq~--~rp~l~vw~i~k~~~~~-----q~~v~Pg~   83 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQL--KRPLLHVWEILKKDQVV-----QYIVLPGP   83 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhhch--hheeeecc--cCccccccccCchhhhh-----hhcccccc
Confidence            3444 4599999999999888886421 11 1222222  55555432  22344555554433322     33344556


Q ss_pred             cccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC------
Q 004581           88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL------  161 (744)
Q Consensus        88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~------  161 (744)
                      ..+..+.+.|.+|+.|+..|.|++|.+.+|..+   ..+.+|-..|+|+.|+-||.+|+||+.||.|.+|++.+      
T Consensus        84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   84 VHALASSNLGYFLLAGTISGNLYLWELSSGILL---NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             eeeeecCCCceEEEeecccCcEEEEEeccccHH---HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            666677788888888889999999999999888   88899999999999999999999999999999998732      


Q ss_pred             ---CceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581          162 ---GYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR  235 (744)
Q Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  235 (744)
                         -+..+.+.        +|.-.|+.+...+.|   +|++++.|.++++||+..|.++.++.. ...+.+++.+|.+..
T Consensus       161 ~~~~~p~~~f~--------~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~  231 (476)
T KOG0646|consen  161 DHSVKPLHIFS--------DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERV  231 (476)
T ss_pred             CCCccceeeec--------cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccE
Confidence               23344444        799999999988765   899999999999999999999988875 778999999999999


Q ss_pred             EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccC--cceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581          236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH--DVRALTVAVPISREDPLPEDKVKRSRGREKPI  313 (744)
Q Consensus       236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (744)
                      +++|+.+|.|.+.++..-.....+ +........-.....+.+|.+  .|+|++++         .||.           
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~-v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais---------~Dgt-----------  290 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAG-VNQKGRHEENTQINVLVGHENESAITCLAIS---------TDGT-----------  290 (476)
T ss_pred             EEecCCcceEEeeehhcCCccccc-ccccccccccceeeeeccccCCcceeEEEEe---------cCcc-----------
Confidence            999999999999887654311110 111111122334667789988  99999997         5554           


Q ss_pred             cccccccccCCCcEEEEecCCCeEEEEecCccCCC
Q 004581          314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF  348 (744)
Q Consensus       314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~  348 (744)
                                   +|++|+.||.+++||+...+.+
T Consensus       291 -------------lLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  291 -------------LLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             -------------EEEeeCCCCCEEEEecchHHHH
Confidence                         9999999999999999875533

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=4.9e-22  Score=198.66  Aligned_cols=292  Identities=15%  Similarity=0.160  Sum_probs=203.9

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEcCCCCEEEEeCCCcceEEEeec
Q 004581          142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSF  219 (744)
Q Consensus       142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~  219 (744)
                      ++.+++++.|+.|++||+.+++.+..+..        + ..+.+++|+|++ .+ ++++.++.|++||..+++.+..+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~--------~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~   71 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPV--------G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS   71 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEEC--------C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC
Confidence            35788999999999999999998888762        2 235679999999 44 6677899999999999988877765


Q ss_pred             cccceeEEEEcCCCCEEEee-cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCC
Q 004581          220 HKGDVNALAAAPSHNRVFST-GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPL  298 (744)
Q Consensus       220 h~~~v~~l~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~  298 (744)
                      +. .+..++|+|+++.++++ +.|+.+++||+.+...                 +..+. +...+.+++++         
T Consensus        72 ~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-----------------~~~~~-~~~~~~~~~~~---------  123 (300)
T TIGR03866        72 GP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV-----------------LAEIP-VGVEPEGMAVS---------  123 (300)
T ss_pred             CC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-----------------EeEee-CCCCcceEEEC---------
Confidence            44 35788999999987665 5689999999987541                 22222 22345667775         


Q ss_pred             CcccccccCCCCCCccccccccccCCCcEEEEecCCC-eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581          299 PEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL  377 (744)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  377 (744)
                      |++.                        .+++++.++ .+..||..+..                               
T Consensus       124 ~dg~------------------------~l~~~~~~~~~~~~~d~~~~~-------------------------------  148 (300)
T TIGR03866       124 PDGK------------------------IVVNTSETTNMAHFIDTKTYE-------------------------------  148 (300)
T ss_pred             CCCC------------------------EEEEEecCCCeEEEEeCCCCe-------------------------------
Confidence            5554                        777776654 45556654311                               


Q ss_pred             EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCce
Q 004581          378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGE  455 (744)
Q Consensus       378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~  455 (744)
                                                     .+..+..  ...+.+++|+|+|++++++  .++.+++|++.... ....
T Consensus       149 -------------------------------~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~  194 (300)
T TIGR03866       149 -------------------------------IVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKK  194 (300)
T ss_pred             -------------------------------EEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeee
Confidence                                           0001111  1234578899999988653  58899999997621 1111


Q ss_pred             EEeeeccCCcccccccEEEEeeCCCEEEEE-eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCE
Q 004581          456 WIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW  534 (744)
Q Consensus       456 ~~~~~~~~~~~~~~v~~i~~spd~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  534 (744)
                      +................++|+||+++++++ +.++.|.+||+.+++.+..+.            +...+.+++|+|+|++
T Consensus       195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~g~~  262 (300)
T TIGR03866       195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL------------VGQRVWQLAFTPDEKY  262 (300)
T ss_pred             eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE------------eCCCcceEEECCCCCE
Confidence            111110011111134578899999986554 446789999999888776654            3457889999999999


Q ss_pred             EEEEe-CCCcEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581          535 LAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       535 las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      |++++ .+|.|.+||+++++.+..++.  +..++.++|+|
T Consensus       263 l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~  300 (300)
T TIGR03866       263 LLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP  300 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence            98864 689999999999998888864  34679998875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.6e-23  Score=195.90  Aligned_cols=253  Identities=17%  Similarity=0.208  Sum_probs=192.6

Q ss_pred             CeEEEEecCCeEEEEEecCCCce-------eEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEE
Q 004581           98 RRVALACDDGCVRIYRITDSDEL-------IYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRIT  169 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~  169 (744)
                      ..+|+++..+.|.|||.......       ....+|.+|+..=.+++|++... .|++++.|++|++||+......... 
T Consensus       138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~-  216 (422)
T KOG0264|consen  138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV-  216 (422)
T ss_pred             cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc-
Confidence            47889999999999999743322       22237889999888999998654 7899999999999999764331000 


Q ss_pred             ecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCC--CcceEEEeeccccceeEEEEcCC-CCEEEeecCCCe
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQ  244 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~-~~~l~~~~~dg~  244 (744)
                      ........+|...|..++|++-.  .+.+++.|+.+.|||.+  +.++.....+|.++|.|++|+|- +..||+|+.|++
T Consensus       217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence            00001112799999999999976  89999999999999999  56667788899999999999994 567888999999


Q ss_pred             EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCC
Q 004581          245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG  324 (744)
Q Consensus       245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  324 (744)
                      |++||+++...                ++..+.+|...|..+.|+         |...                      
T Consensus       297 V~LwDlRnL~~----------------~lh~~e~H~dev~~V~WS---------Ph~e----------------------  329 (422)
T KOG0264|consen  297 VALWDLRNLNK----------------PLHTFEGHEDEVFQVEWS---------PHNE----------------------  329 (422)
T ss_pred             EEEeechhccc----------------CceeccCCCcceEEEEeC---------CCCC----------------------
Confidence            99999998653                467889999999999998         4432                      


Q ss_pred             CcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCC
Q 004581          325 VPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGH  404 (744)
Q Consensus       325 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~  404 (744)
                       .+|++++.|+.+.+||+......+...              .                                   ..
T Consensus       330 -tvLASSg~D~rl~vWDls~ig~eq~~e--------------d-----------------------------------a~  359 (422)
T KOG0264|consen  330 -TVLASSGTDRRLNVWDLSRIGEEQSPE--------------D-----------------------------------AE  359 (422)
T ss_pred             -ceeEecccCCcEEEEeccccccccChh--------------h-----------------------------------hc
Confidence             489999999999999998643222100              0                                   00


Q ss_pred             CCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCceEEEEeec
Q 004581          405 ASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKK  448 (744)
Q Consensus       405 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~~~~~v~l~~~~~  448 (744)
                      ..+..+.-+..+|...|..+.|+|+..++++  +.|+.+.||.+..
T Consensus       360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            1112333445677788999999999977665  5889999999863

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1e-22  Score=180.76  Aligned_cols=273  Identities=17%  Similarity=0.192  Sum_probs=198.4

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      .+||+||.||.|.|||+.+...-   +.+.+|..+|+|++||+||+.|+|++.|..|.+||+..|.+++++.        
T Consensus        36 ~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--------  104 (405)
T KOG1273|consen   36 DYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--------  104 (405)
T ss_pred             ceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--------
Confidence            69999999999999999876644   8899999999999999999999999999999999999999999997        


Q ss_pred             CCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccc----cceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581          178 GPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHK----GDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                       ...+|+.+.|+|..  ..++.-.+..-.+-++..+....--....    ..-.+..|.+.|+++++|...|.+.+++..
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence             77899999999976  44444444444444444322111001001    112334688999999999999999999998


Q ss_pred             cCcCCCCCCCCcccccceEEEEeeeeecc-CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEE
Q 004581          252 CESIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS  330 (744)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s  330 (744)
                      +-.                 ++..++..+ ..|..+.++         ..                        +..|+.
T Consensus       184 t~e-----------------~vas~rits~~~IK~I~~s---------~~------------------------g~~lii  213 (405)
T KOG1273|consen  184 TLE-----------------CVASFRITSVQAIKQIIVS---------RK------------------------GRFLII  213 (405)
T ss_pred             hhe-----------------eeeeeeechheeeeEEEEe---------cc------------------------CcEEEE
Confidence            865                 355555554 677888775         23                        348999


Q ss_pred             ecCCCeEEEEecCccCCCCCcccCCCCCCCccccc-----cceeecCCeEEEEEeCC---eEEEEEeeccCCcccCCCCC
Q 004581          331 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLV-----HNTIFSHTSLLLVQYSC---RLDILSVRLENNVESRSSSG  402 (744)
Q Consensus       331 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~---~i~i~~~~~~~~~~~~~~~~  402 (744)
                      -+.|..|+.|++....... ....+.+.......|     .+++||.+|.+++.++.   .+.||.-..++         
T Consensus       214 NtsDRvIR~ye~~di~~~~-r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---------  283 (405)
T KOG1273|consen  214 NTSDRVIRTYEISDIDDEG-RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---------  283 (405)
T ss_pred             ecCCceEEEEehhhhcccC-ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc---------
Confidence            9999999999987533221 111111212222333     35788999999987754   78888866654         


Q ss_pred             CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeec
Q 004581          403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK  448 (744)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~  448 (744)
                            .+.-+..........+.|.|-...++.-..|.+++|....
T Consensus       284 ------LVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~  323 (405)
T KOG1273|consen  284 ------LVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ  323 (405)
T ss_pred             ------eeeeecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence                  3333333334677888899988888888889999998764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=204.66  Aligned_cols=286  Identities=17%  Similarity=0.199  Sum_probs=221.4

Q ss_pred             CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC-ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEE
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFW  206 (744)
Q Consensus       128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vw  206 (744)
                      +|...-+.++|.|+|++|.+++.||.|++|+..+- +....+.        .+...|.+++...+ +|++|+.+++|.+|
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~~s~-~f~~~s~~~tv~~y   81 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIACYSN-HFLTGSEQNTVLRY   81 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEeeccc-ceEEeeccceEEEe
Confidence            78889999999999999999999999999997665 3333332        25667777766533 89999999999999


Q ss_pred             eCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceee
Q 004581          207 DSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL  286 (744)
Q Consensus       207 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  286 (744)
                      ...+++.-..+...+-++.+++|+.+|++++.|+.|-.|++.+......                 ...+++|..+|.++
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-----------------~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-----------------EKVLRGHDAPVLQL  144 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-----------------heeecccCCceeee
Confidence            9988776555555577899999999999999999999999999988763                 67889999999999


Q ss_pred             eeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccccc
Q 004581          287 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVH  366 (744)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  366 (744)
                      .+.         |.+.                        +|++.+-||.|++|++.+........              
T Consensus       145 ~~~---------p~~~------------------------fLAvss~dG~v~iw~~~~~~~~~tl~--------------  177 (933)
T KOG1274|consen  145 SYD---------PKGN------------------------FLAVSSCDGKVQIWDLQDGILSKTLT--------------  177 (933)
T ss_pred             eEc---------CCCC------------------------EEEEEecCceEEEEEcccchhhhhcc--------------
Confidence            996         4444                        99999999999999998533211000              


Q ss_pred             ceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEe
Q 004581          367 NTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFEL  446 (744)
Q Consensus       367 ~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~  446 (744)
                                                                              .  +.++.                
T Consensus       178 --------------------------------------------------------~--v~k~n----------------  183 (933)
T KOG1274|consen  178 --------------------------------------------------------G--VDKDN----------------  183 (933)
T ss_pred             --------------------------------------------------------c--CCccc----------------
Confidence                                                                    0  00000                


Q ss_pred             ecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEE
Q 004581          447 KKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKM  526 (744)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  526 (744)
                           ..        ..   ...++.++|+|+|..|+....|+.|.+|+..+++....+....         +...++.+
T Consensus       184 -----~~--------~~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~---------~ss~~~~~  238 (933)
T KOG1274|consen  184 -----EF--------IL---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL---------SSSKFSDL  238 (933)
T ss_pred             -----cc--------cc---cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc---------cccceEEE
Confidence                 00        00   1256778999999889889999999999999998888877631         34449999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581          527 FTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       527 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw  591 (744)
                      +|||+|+|||+++.||.|.|||.++...     ......|++++|.| +.+-+-.....|...+|
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p-~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKP-NANAITLITALGTLGVS  297 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCC-CCCeeEEEeeccccccC
Confidence            9999999999999999999999998332     11235899999999 77766555555544444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.3e-23  Score=190.81  Aligned_cols=286  Identities=15%  Similarity=0.164  Sum_probs=217.4

Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCC--CcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccC
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR--HGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~  253 (744)
                      ...+.|.++.|+|.. .+++++.|++++||.+.  ....++++.....+|.+.+|.|+|. .+++++...-++.||+.+.
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            355789999999999 89999999999999776  3456788888889999999999998 8999999999999999886


Q ss_pred             cCCCCCCCCcccccceEEEEeeeeecc-CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec
Q 004581          254 SIGPNDGLSSSEVIKKWIYVGSVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG  332 (744)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~  332 (744)
                      +..               .+....++. ..+....++         +++.                        +|+..|
T Consensus       291 k~~---------------k~~~~~g~e~~~~e~FeVS---------hd~~------------------------fia~~G  322 (514)
T KOG2055|consen  291 KVT---------------KLKPPYGVEEKSMERFEVS---------HDSN------------------------FIAIAG  322 (514)
T ss_pred             ccc---------------cccCCCCcccchhheeEec---------CCCC------------------------eEEEcc
Confidence            631               122333333 234455554         4444                        889999


Q ss_pred             CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEE
Q 004581          333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ  412 (744)
Q Consensus       333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (744)
                      ..|.|.+....+...                                                              +..
T Consensus       323 ~~G~I~lLhakT~el--------------------------------------------------------------i~s  340 (514)
T KOG2055|consen  323 NNGHIHLLHAKTKEL--------------------------------------------------------------ITS  340 (514)
T ss_pred             cCceEEeehhhhhhh--------------------------------------------------------------hhe
Confidence            999888876654321                                                              111


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcE
Q 004581          413 VKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRI  491 (744)
Q Consensus       413 ~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i  491 (744)
                      ++.  .+.+..++|+.||+.|.+ +.+|.|.+|++..+ .....|.-..      .-.-++++.|+++.+||+|+..|.|
T Consensus       341 ~Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G------~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  341 FKI--EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDDG------SVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             eee--ccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeecC------ccceeeeeecCCCceEEeccCcceE
Confidence            221  267888999999977655 68999999999872 2222221111      1145678889999999999999999


Q ss_pred             EEEEccC------CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC--CCcEEEEECCCcceEEEEecCCC
Q 004581          492 YVVDVSS------SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEG  563 (744)
Q Consensus       492 ~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~  563 (744)
                      .|||.++      .+++.++..           -...|++|.|++|++.||.+|.  ...+++-.+.+......+|...+
T Consensus       412 NIYd~~s~~~s~~PkPik~~dN-----------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~  480 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDN-----------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT  480 (514)
T ss_pred             EEeccchhhccCCCCchhhhhh-----------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC
Confidence            9999743      356666665           6788999999999999998875  56799988887766555554332


Q ss_pred             --CceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581          564 --ASVTAAGFPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       564 --~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~  594 (744)
                        +.|+||+|+| .+.+||+|..+|.|.+|.+.
T Consensus       481 ~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  481 KVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             cccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence              6899999999 99999999999999999874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.92  E-value=3.4e-21  Score=187.86  Aligned_cols=260  Identities=13%  Similarity=0.137  Sum_probs=190.8

Q ss_pred             CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEE
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL  186 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  186 (744)
                      ..+.+||...|..+   .++++|...|.|++|+.||+.+|+|+.|..|.+|+-+- +-+.++         .|...|.|+
T Consensus        33 ~rlliyD~ndG~ll---qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY---------SH~D~IQCM   99 (1081)
T KOG1538|consen   33 SRLLVYDTSDGTLL---QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY---------SHNDAIQCM   99 (1081)
T ss_pred             CEEEEEeCCCcccc---cccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee---------ccCCeeeEe
Confidence            47999999988888   89999999999999999999999999999999998542 223333         599999999


Q ss_pred             EEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccc
Q 004581          187 LSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEV  266 (744)
Q Consensus       187 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  266 (744)
                      .|+|-...+..++-...-+|..+... +...+ ....+.+.+|..||++++.|-.||+|.+-+......           
T Consensus       100 sFNP~~h~LasCsLsdFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-----------  166 (1081)
T KOG1538|consen  100 SFNPITHQLASCSLSDFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-----------  166 (1081)
T ss_pred             ecCchHHHhhhcchhhccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-----------
Confidence            99998844444445567889876433 33333 256789999999999999999999999986554431           


Q ss_pred             cceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581          267 IKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       267 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                          ..+..--+...+|.++++++         ...                   ....+.++......++.+|.+....
T Consensus       167 ----~~I~Rpgg~Nspiwsi~~~p---------~sg-------------------~G~~di~aV~DW~qTLSFy~LsG~~  214 (1081)
T KOG1538|consen  167 ----VKIERPGGSNSPIWSICWNP---------SSG-------------------EGRNDILAVADWGQTLSFYQLSGKQ  214 (1081)
T ss_pred             ----eEEeCCCCCCCCceEEEecC---------CCC-------------------CCccceEEEEeccceeEEEEeccee
Confidence                11222345778899999973         221                   1122467777777777777665311


Q ss_pred             CCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581          347 KFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI  426 (744)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  426 (744)
                      .-..                                                            .    .-.....|+.+
T Consensus       215 Igk~------------------------------------------------------------r----~L~FdP~CisY  230 (1081)
T KOG1538|consen  215 IGKD------------------------------------------------------------R----ALNFDPCCISY  230 (1081)
T ss_pred             eccc------------------------------------------------------------c----cCCCCchhhee
Confidence            0000                                                            0    00134568889


Q ss_pred             cCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581          427 SNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       427 s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~  497 (744)
                      -++|.++.. |+++.+++|...    ++.+     ..+......|..++..|++++++.|+.||+|..|++.
T Consensus       231 f~NGEy~LiGGsdk~L~~fTR~----GvrL-----GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  231 FTNGEYILLGGSDKQLSLFTRD----GVRL-----GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccCCcEEEEccCCCceEEEeec----CeEE-----eeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            999999888 589999998754    4443     4444555599999999999999999999999999873

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.4e-23  Score=197.51  Aligned_cols=268  Identities=20%  Similarity=0.288  Sum_probs=215.4

Q ss_pred             CCCCeeEEecCCCeEEEEEccC---CceeEEeecc--CcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYD---LKQKIVLQSI--DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~h--~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      -+..++++||. |-|+|||+..   ..++..|...  ..-|.++.+.|||                              
T Consensus       429 ~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg------------------------------  477 (705)
T KOG0639|consen  429 NPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------------------------  477 (705)
T ss_pred             CCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC------------------------------
Confidence            34556777775 6799999964   2334444433  4678888888988                              


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW  157 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw  157 (744)
                                          +.|++|++-.++.|||+..... .....+..-.-...+++.|||.+.+++++.||.|.||
T Consensus       478 --------------------rtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vw  536 (705)
T KOG0639|consen  478 --------------------RTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW  536 (705)
T ss_pred             --------------------ceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence                                6899999999999999974432 2224455555578889999999999999999999999


Q ss_pred             EccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEE
Q 004581          158 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV  236 (744)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  236 (744)
                      |+.+...++.+.        +|...+.||..++|| .|-+|+-|++|+.||+++++.++.... ...|.++.++|++.+|
T Consensus       537 DLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWl  607 (705)
T KOG0639|consen  537 DLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWL  607 (705)
T ss_pred             Ecccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccce
Confidence            999999999998        899999999999999 899999999999999999988877664 6789999999999999


Q ss_pred             EeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc
Q 004581          237 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS  316 (744)
Q Consensus       237 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (744)
                      ++|-.++.+.+......+                  ...+..|...|.++.|+         +-|+              
T Consensus       608 avGMens~vevlh~skp~------------------kyqlhlheScVLSlKFa---------~cGk--------------  646 (705)
T KOG0639|consen  608 AVGMENSNVEVLHTSKPE------------------KYQLHLHESCVLSLKFA---------YCGK--------------  646 (705)
T ss_pred             eeecccCcEEEEecCCcc------------------ceeecccccEEEEEEec---------ccCc--------------
Confidence            999999999988877655                  35667889999999997         5555              


Q ss_pred             ccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcc
Q 004581          317 YHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVE  396 (744)
Q Consensus       317 ~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~  396 (744)
                                .+++.+.|..+..|...-...+                                                
T Consensus       647 ----------wfvStGkDnlLnawrtPyGasi------------------------------------------------  668 (705)
T KOG0639|consen  647 ----------WFVSTGKDNLLNAWRTPYGASI------------------------------------------------  668 (705)
T ss_pred             ----------eeeecCchhhhhhccCccccce------------------------------------------------
Confidence                      8999999999999976532211                                                


Q ss_pred             cCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEe
Q 004581          397 SRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFEL  446 (744)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~  446 (744)
                                      +..+....|.++.+|.|.++|++| .+.+..+|.+
T Consensus       669 ----------------FqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  669 ----------------FQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ----------------eeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                            122344778889999999999996 5557777765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.6e-22  Score=201.63  Aligned_cols=273  Identities=15%  Similarity=0.222  Sum_probs=212.8

Q ss_pred             eccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCC
Q 004581          218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP  297 (744)
Q Consensus       218 ~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  297 (744)
                      .+|....+.++|.|+|++|++++.||.|++|+.......                ...+..+...|.+++..        
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~----------------P~ti~~~g~~v~~ia~~--------   65 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE----------------PETIDISGELVSSIACY--------   65 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC----------------CchhhccCceeEEEeec--------
Confidence            468888999999999999999999999999987765210                11223366777777762        


Q ss_pred             CCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581          298 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL  377 (744)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  377 (744)
                                                 ...|++|+.+++|.+|....+..-.                            
T Consensus        66 ---------------------------s~~f~~~s~~~tv~~y~fps~~~~~----------------------------   90 (933)
T KOG1274|consen   66 ---------------------------SNHFLTGSEQNTVLRYKFPSGEEDT----------------------------   90 (933)
T ss_pred             ---------------------------ccceEEeeccceEEEeeCCCCCccc----------------------------
Confidence                                       2289999999999999887543110                            


Q ss_pred             EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceE
Q 004581          378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEW  456 (744)
Q Consensus       378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~  456 (744)
                                                     .+.++.    -++++++++.+|+++|.| +|-.|++-++..  ....  
T Consensus        91 -------------------------------iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~--  131 (933)
T KOG1274|consen   91 -------------------------------ILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQE--  131 (933)
T ss_pred             -------------------------------eeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccc--cchh--
Confidence                                           233333    568899999999999995 777888888865  2222  


Q ss_pred             EeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEE
Q 004581          457 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLA  536 (744)
Q Consensus       457 ~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~la  536 (744)
                          ..+.+|..+|.++.|+|.+++||+.+-||.|++||++++.+..++.+.....+   ......++.++|+|+|..||
T Consensus       132 ----~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~---~~~s~i~~~~aW~Pk~g~la  204 (933)
T KOG1274|consen  132 ----KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE---FILSRICTRLAWHPKGGTLA  204 (933)
T ss_pred             ----eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc---ccccceeeeeeecCCCCeEE
Confidence                45678888999999999999999999999999999999998888776321110   01255678899999988899


Q ss_pred             EEeCCCcEEEEECCCcceEEEEecCCC-CceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581          537 AVNCFGDVYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE  615 (744)
Q Consensus       537 s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~  615 (744)
                      ....|+.|.+|+.++......+...+. ..+..++|+| .|+|||+++.||.|.|||+++-+.               ..
T Consensus       205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~~---------------~~  268 (933)
T KOG1274|consen  205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHER---------------HE  268 (933)
T ss_pred             eeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecccchh---------------cc
Confidence            999999999999999988777654433 4499999999 999999999999999999998531               22


Q ss_pred             CCCceEEEEeCCCCCC
Q 004581          616 FPGEVIGLSFSPSPSS  631 (744)
Q Consensus       616 ~~~~v~~i~fspdg~~  631 (744)
                      ....|.+++|-|+++.
T Consensus       269 ~~~~Vc~~aw~p~~n~  284 (933)
T KOG1274|consen  269 FKRAVCCEAWKPNANA  284 (933)
T ss_pred             ccceeEEEecCCCCCe
Confidence            3478999999998653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=4.9e-22  Score=182.84  Aligned_cols=331  Identities=22%  Similarity=0.233  Sum_probs=215.2

Q ss_pred             CeEEEEecCCeEEEEEecCC------CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC-------C--
Q 004581           98 RRVALACDDGCVRIYRITDS------DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL-------G--  162 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~-------~--  162 (744)
                      +.||+|+.|..|+||.+..+      ..+.+...|.+|...|+++.|+|+|+.||+|+.+|.|.+|....       .  
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~  106 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA  106 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence            38999999999999998722      25677789999999999999999999999999999999998651       0  


Q ss_pred             ---ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEe
Q 004581          163 ---YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       163 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~  238 (744)
                         ++.+....    ...+|...|+.++|+|++ .+++++.|+.+++||+..|+.++.+..|...|..++|.|-++++++
T Consensus       107 ~~~ke~w~v~k----~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s  182 (434)
T KOG1009|consen  107 DLNKEKWVVKK----VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS  182 (434)
T ss_pred             hhCccceEEEE----EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence               10011000    112689999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581          239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH  318 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (744)
                      -+.|...+.+.+....                    ....|...+.-...                              
T Consensus       183 ~s~dr~~~~~~~~~~~--------------------~~~~~~~~~m~~~~------------------------------  212 (434)
T KOG1009|consen  183 KSSDRHPEGFSAKLKQ--------------------VIKRHGLDIMPAKA------------------------------  212 (434)
T ss_pred             hccCcccceeeeeeee--------------------eeeeeeeeEeeecc------------------------------
Confidence            9999977777765533                    11222211110000                              


Q ss_pred             ccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581          319 KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESR  398 (744)
Q Consensus       319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~  398 (744)
                                --.......+++.-++..                .....++|+|+|.++++..+.+++-.-...+     
T Consensus       213 ----------~~~~e~~s~rLfhDeTlk----------------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n-----  261 (434)
T KOG1009|consen  213 ----------FNEREGKSTRLFHDETLK----------------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRN-----  261 (434)
T ss_pred             ----------cCCCCcceeeeeecCchh----------------hhhhhcccCCCCcEEEcccceeeeCCceeec-----
Confidence                      000112234454444333                3455778999999999877654431111000     


Q ss_pred             CCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC
Q 004581          399 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD  478 (744)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd  478 (744)
                                ..+.+..+.-....+..-+|.--.+++...  -..|++..              +...  ..  +---|-
T Consensus       262 ----------~tYvfsrk~l~rP~~~lp~~~k~~lavr~~--pVy~elrp--------------~~~~--~~--~~~lpy  311 (434)
T KOG1009|consen  262 ----------TSYVFSRKDLKRPAARLPSPKKPALAVRFS--PVYYELRP--------------LSSE--KF--LFVLPY  311 (434)
T ss_pred             ----------eeEeeccccccCceeecCCCCcceEEEEee--eeEEEecc--------------cccc--cc--cccccc
Confidence                      011111110000000000111111222111  11222221              0000  00  111233


Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581          479 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ  554 (744)
Q Consensus       479 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~  554 (744)
                      +-.+|+++.+ .|+|||.++..++......          |-..|+.++||+||.+|+..|.||...+-.++..++
T Consensus       312 rlvfaiAt~~-svyvydtq~~~P~~~v~ni----------hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  312 RLVFAIATKN-SVYVYDTQTLEPLAVVDNI----------HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             ceEEEEeecc-eEEEeccccccceEEEeee----------eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            4455666654 6999999988888777664          889999999999999999999999888777776654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.4e-24  Score=213.59  Aligned_cols=251  Identities=19%  Similarity=0.286  Sum_probs=214.4

Q ss_pred             eEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcc
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD   87 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (744)
                      ++..-..-.+++||...      +..|...|.|+.+-..+                                        
T Consensus         7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~----------------------------------------   40 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSS----------------------------------------   40 (825)
T ss_pred             cceeeeeeccccccchh------hhhhhhhhceeeeeccc----------------------------------------
Confidence            45555666777887543      45688888888875554                                        


Q ss_pred             cccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE
Q 004581           88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR  167 (744)
Q Consensus        88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~  167 (744)
                                +.+++|+.|..+-+|.+.....+   ..|.+|+.+|.|+.|+++..+|++|+.+|+|++||++.++.++.
T Consensus        41 ----------r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt  107 (825)
T KOG0267|consen   41 ----------RSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT  107 (825)
T ss_pred             ----------eeeccCCCceeeccccccCCchh---heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh
Confidence                      58999999999999999644444   56899999999999999999999999999999999999999998


Q ss_pred             EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581          168 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                      +.        +|...+.++.|+|-+ +.++|+.|+.+++||++...+...+.+|...|.+++|+|+|++++.++.|.+++
T Consensus       108 Lt--------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  108 LT--------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hh--------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            88        799999999999999 889999999999999998889999999999999999999999999999999999


Q ss_pred             EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581          247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP  326 (744)
Q Consensus       247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  326 (744)
                      +||+..+.+                 ...+..|...+.++.+.         |                        ..-
T Consensus       180 i~d~~agk~-----------------~~ef~~~e~~v~sle~h---------p------------------------~e~  209 (825)
T KOG0267|consen  180 IWDLTAGKL-----------------SKEFKSHEGKVQSLEFH---------P------------------------LEV  209 (825)
T ss_pred             eeccccccc-----------------ccccccccccccccccC---------c------------------------hhh
Confidence            999988874                 66778899999998874         2                        333


Q ss_pred             EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC
Q 004581          327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC  382 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  382 (744)
                      ++++|+.|+++++||++++..+.....       ....+.+.+|+|++..+.++..
T Consensus       210 Lla~Gs~d~tv~f~dletfe~I~s~~~-------~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  210 LLAPGSSDRTVRFWDLETFEVISSGKP-------ETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             hhccCCCCceeeeeccceeEEeeccCC-------ccCCceeeeecCCceeeecCch
Confidence            899999999999999998776543321       2467889999999999888754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.5e-21  Score=171.75  Aligned_cols=313  Identities=18%  Similarity=0.227  Sum_probs=227.8

Q ss_pred             ccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCce------EEEEEe-cCCCCCCCCceeEEEEEEecCC--eEE
Q 004581          126 LPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYE------IYRITV-GLGGLGSGPELCIWSLLSLRCG--TLV  195 (744)
Q Consensus       126 ~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~------~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~l~  195 (744)
                      ...|.+.|+++...+ .|+++++|+.||.|.+||++....      +..-.. -......+|...|.++.|-|-.  .+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            346889999999977 689999999999999999976431      111000 0123345799999999999844  899


Q ss_pred             EEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC---CCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581          196 SADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS---HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY  272 (744)
Q Consensus       196 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  272 (744)
                      +++.|.++++||..+-+....++. .+.|.+-+++|-   ..++++|..|-.|++-|+..+..                 
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-----------------  180 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-----------------  180 (397)
T ss_pred             cccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-----------------
Confidence            999999999999999888877775 678888888884   34778888899999999999884                 


Q ss_pred             EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581          273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE  352 (744)
Q Consensus       273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  352 (744)
                      ...+.+|...|.++.|+         |...                 |      .|++|+.||.|++||++...      
T Consensus       181 sH~LsGHr~~vlaV~Ws---------p~~e-----------------~------vLatgsaDg~irlWDiRras------  222 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWS---------PSSE-----------------W------VLATGSADGAIRLWDIRRAS------  222 (397)
T ss_pred             eeeeccccCceEEEEec---------cCce-----------------e------EEEecCCCceEEEEEeeccc------
Confidence            78899999999999997         3332                 2      79999999999999997411      


Q ss_pred             cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 004581          353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML  432 (744)
Q Consensus       353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  432 (744)
                                                   +                          ++..+.                  
T Consensus       223 -----------------------------g--------------------------cf~~lD------------------  229 (397)
T KOG4283|consen  223 -----------------------------G--------------------------CFRVLD------------------  229 (397)
T ss_pred             -----------------------------c--------------------------eeEEee------------------
Confidence                                         0                          011110                  


Q ss_pred             EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee-eeeccCccc
Q 004581          433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-HTFTPCREE  511 (744)
Q Consensus       433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~  511 (744)
                                   ..+   +.+.-.+  ..-+.|...+..++|+.|+.++++.+.|..+++|+..+|+-. +.+-.... 
T Consensus       230 -------------~hn---~k~~p~~--~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~-  290 (397)
T KOG4283|consen  230 -------------QHN---TKRPPIL--KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH-  290 (397)
T ss_pred             -------------ccc---CccCccc--cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc-
Confidence                         000   1110001  234567778999999999999999999999999999877532 21111000 


Q ss_pred             ccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581          512 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       512 ~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw  591 (744)
                        + ...| -.+. +. +.+...++---.++.+.++++-.+..+..+.. |...|.+.++.| +-+.+.++..|+.|..|
T Consensus       291 --n-~~~~-~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-h~k~i~c~~~~~-~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  291 --N-QTTS-FAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-HLKRINCAAYRP-DFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             --c-cccc-ceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeec-ccceeeEEeecC-chhhhhccccCCccccc
Confidence              0 0001 1111 22 33444555555668899999999988887766 467899999999 99999999999999999


Q ss_pred             EcC
Q 004581          592 DVE  594 (744)
Q Consensus       592 d~~  594 (744)
                      -..
T Consensus       363 ~p~  365 (397)
T KOG4283|consen  363 SPA  365 (397)
T ss_pred             ccc
Confidence            874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.3e-24  Score=212.11  Aligned_cols=206  Identities=20%  Similarity=0.283  Sum_probs=189.4

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      ..+++|+.|..+-+|.+.....+..|.+|..+|.|+.|+++.                                      
T Consensus        41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E--------------------------------------   82 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE--------------------------------------   82 (825)
T ss_pred             eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch--------------------------------------
Confidence            447889999999999998877788899999999999999998                                      


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                                  .+|++|+.+|+|++||++..+.+   ++|.+|...+.++.|+|-+.+.|+|+.|+.+++||.+...+.
T Consensus        83 ------------~LlaagsasgtiK~wDleeAk~v---rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~  147 (825)
T KOG0267|consen   83 ------------RLLAAGSASGTIKVWDLEEAKIV---RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS  147 (825)
T ss_pred             ------------hhhcccccCCceeeeehhhhhhh---hhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence                        58999999999999999977777   899999999999999999999999999999999999988889


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ  244 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~  244 (744)
                      +.+.        +|...|..+.|+|+| ++++|+.|.+++|||+..|+.+..|..|.+.+..+.|+|..-++++|+.|++
T Consensus       148 ~~~~--------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  148 HTYK--------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT  219 (825)
T ss_pred             eeec--------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence            8887        799999999999999 8999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581          245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA  289 (744)
Q Consensus       245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  289 (744)
                      +++||+++-.                 .+.........|++++|.
T Consensus       220 v~f~dletfe-----------------~I~s~~~~~~~v~~~~fn  247 (825)
T KOG0267|consen  220 VRFWDLETFE-----------------VISSGKPETDGVRSLAFN  247 (825)
T ss_pred             eeeeccceeE-----------------EeeccCCccCCceeeeec
Confidence            9999998644                 355556668889999998

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.2e-21  Score=172.42  Aligned_cols=291  Identities=16%  Similarity=0.154  Sum_probs=202.4

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCc
Q 004581          133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG  211 (744)
Q Consensus       133 V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~  211 (744)
                      -.|+.|++.|.+||+|+.||.|.|||+.|-..-+.+.        +|..+|.+++|++|| .|++++.|..|.+||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls--------aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS--------AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh--------ccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence            7899999999999999999999999999887666665        799999999999999 8999999999999999999


Q ss_pred             ceEEEeeccccceeEEEEcCCCCEEEe-ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeec
Q 004581          212 TLLQAHSFHKGDVNALAAAPSHNRVFS-TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV  290 (744)
Q Consensus       212 ~~~~~~~~h~~~v~~l~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  290 (744)
                      .+++.+.. .++|+...|+|.....+. .-.+..-.+-++....                   .         ..+... 
T Consensus        98 s~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-------------------h---------~~Lp~d-  147 (405)
T KOG1273|consen   98 SPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-------------------H---------SVLPKD-  147 (405)
T ss_pred             CceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCc-------------------e---------eeccCC-
Confidence            99999986 789999999996543333 2233333333333211                   0         001110 


Q ss_pred             cCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceee
Q 004581          291 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF  370 (744)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  370 (744)
                              +++......         .+....+.+.++++|...|.+.+++..+.+..                      
T Consensus       148 --------~d~dln~sa---------s~~~fdr~g~yIitGtsKGkllv~~a~t~e~v----------------------  188 (405)
T KOG1273|consen  148 --------DDGDLNSSA---------SHGVFDRRGKYIITGTSKGKLLVYDAETLECV----------------------  188 (405)
T ss_pred             --------Ccccccccc---------ccccccCCCCEEEEecCcceEEEEecchheee----------------------
Confidence                    111100000         00011345668999999999999988764311                      


Q ss_pred             cCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecC
Q 004581          371 SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKG  449 (744)
Q Consensus       371 s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~  449 (744)
                                                              ..++......|..+.++..|+++++ ++|..||.|++..-
T Consensus       189 ----------------------------------------as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  189 ----------------------------------------ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             ----------------------------------------eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence                                                    1111111255777889999999999 69999999998731


Q ss_pred             CCCCceEEee-eccCCccc--ccccEEEEeeCCCEEEEEeC-CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581          450 KVGQGEWIIN-KRQLPRKL--QFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK  525 (744)
Q Consensus       450 ~~~~~~~~~~-~~~~~~~~--~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  525 (744)
                      ....+--.++ ..++....  ..-.+++||.||.|++.++. ...++||.-..|.+++.+.+.          .......
T Consensus       229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~----------kgE~l~D  298 (405)
T KOG1273|consen  229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT----------KGEELLD  298 (405)
T ss_pred             cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC----------chhheee
Confidence            1110000000 01111111  14567899999999988875 568999999999999999983          1255778


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEECCC
Q 004581          526 MFTSSDGQWLAAVNCFGDVYIFNLEI  551 (744)
Q Consensus       526 l~~spdg~~las~~~dg~i~iwd~~~  551 (744)
                      +.|.|-...+++. ..|.|+||....
T Consensus       299 V~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  299 VNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             cccccceeeeeec-cCCceEEEEeec
Confidence            9999998888887 788999998543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.9e-21  Score=169.79  Aligned_cols=277  Identities=18%  Similarity=0.245  Sum_probs=201.4

Q ss_pred             CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC----cceEEEeeccccceeEEEEcC--CCCEEEeecCCCeEEEEE
Q 004581          177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH----GTLLQAHSFHKGDVNALAAAP--SHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~--~~~~l~~~~~dg~i~iw~  249 (744)
                      .+|...|.++.|.+-| ++++++.|++|+|||.+.    ..+....+.|.+.|..+.|.+  -|+.+++++.|+++.+|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            3789999999999999 999999999999999654    345677889999999999976  379999999999999998


Q ss_pred             cccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581          250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI  329 (744)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~  329 (744)
                      -....        ......+|.....+......|..+.|.         |..                      -+-.|+
T Consensus        90 E~~~~--------~~~~~~~Wv~~ttl~DsrssV~DV~Fa---------P~h----------------------lGLklA  130 (361)
T KOG2445|consen   90 EQEKS--------EEAHGRRWVRRTTLVDSRSSVTDVKFA---------PKH----------------------LGLKLA  130 (361)
T ss_pred             ecccc--------cccccceeEEEEEeecCCcceeEEEec---------chh----------------------cceEEE
Confidence            64322        123446899999999999999999997         322                      122799


Q ss_pred             EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581          330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL  409 (744)
Q Consensus       330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  409 (744)
                      +++.||.||+|+......+..                                    |.+...-.              .
T Consensus       131 ~~~aDG~lRIYEA~dp~nLs~------------------------------------W~Lq~Ei~--------------~  160 (361)
T KOG2445|consen  131 AASADGILRIYEAPDPMNLSQ------------------------------------WTLQHEIQ--------------N  160 (361)
T ss_pred             EeccCcEEEEEecCCcccccc------------------------------------chhhhhhh--------------h
Confidence            999999999999875332221                                    11110000              0


Q ss_pred             EEEEEecCCCCeEEEEEcCCC---CEEEEEcCC------ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeC--
Q 004581          410 LVQVKSKASRKIICSTISNSG---MLFAYSDHV------KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD--  478 (744)
Q Consensus       410 ~~~~~~~~~~~i~~~~~s~~g---~~la~~~~~------~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd--  478 (744)
                      +..-...+.....|+.|+|..   .+||+|.+.      .++||....  ++.+ | ....+++++..+|+.++|.|+  
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--~~rK-w-~kva~L~d~~dpI~di~wAPn~G  236 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--NGRK-W-LKVAELPDHTDPIRDISWAPNIG  236 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--Ccce-e-eeehhcCCCCCcceeeeeccccC
Confidence            000001223556777887643   678888777      899999875  3323 2 223667899999999999995  


Q ss_pred             --CCEEEEEeCCCcEEEEEccCCc------------eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcE
Q 004581          479 --SSQLIIAGHDRRIYVVDVSSSE------------LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV  544 (744)
Q Consensus       479 --~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i  544 (744)
                        -..||+++.|| |+||.+....            .+..+..   ..-.+...|.+.|..+.|+-.|..|++.+.||.|
T Consensus       237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v---~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV---EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce---EEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence              34789999999 9999986311            0000000   0011234599999999999999999999999999


Q ss_pred             EEEECC
Q 004581          545 YIFNLE  550 (744)
Q Consensus       545 ~iwd~~  550 (744)
                      ++|...
T Consensus       313 RLWkan  318 (361)
T KOG2445|consen  313 RLWKAN  318 (361)
T ss_pred             eehhhh
Confidence            999764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=2.6e-21  Score=173.09  Aligned_cols=148  Identities=20%  Similarity=0.240  Sum_probs=125.4

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeeccc--CccCcEEEEEEecCC----CEEEEEeCCCeEEEEEccCCceEEEEEec
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADG----NMLYSGSSDGYIRSWDAKLGYEIYRITVG  171 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~dg----~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  171 (744)
                      +.+|+.+. +.+.+|+......+...+...  .|......++|+-|-    .+||.|+.-|.|+|.|+.++++...+.  
T Consensus        56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~--  132 (385)
T KOG1034|consen   56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR--  132 (385)
T ss_pred             ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee--
Confidence            35666655 578999987544333223332  477888999998653    478999999999999999999999998  


Q ss_pred             CCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEe---eccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581          172 LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAH---SFHKGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       172 ~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                            +|...|..+.|.|+.  ++++++.|..|++|++++..++..+   .+|...|.++.|+++|.+|+++|.|.+++
T Consensus       133 ------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk  206 (385)
T KOG1034|consen  133 ------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLK  206 (385)
T ss_pred             ------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence                  799999999999998  8999999999999999999999876   57999999999999999999999999999


Q ss_pred             EEEcccCc
Q 004581          247 LYKASCES  254 (744)
Q Consensus       247 iw~~~~~~  254 (744)
                      +|++...+
T Consensus       207 ~W~l~~~~  214 (385)
T KOG1034|consen  207 LWRLNVKE  214 (385)
T ss_pred             EEecChhH
Confidence            99998544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2e-19  Score=182.48  Aligned_cols=426  Identities=16%  Similarity=0.228  Sum_probs=285.5

Q ss_pred             EEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC---EEEEEeCCCeEEEEEccCCceEEEEEecCCCCC
Q 004581          100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN---MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG  176 (744)
Q Consensus       100 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (744)
                      ...++.+..|.||...++++.   +.+.+|..+++++.+.|...   ++.+++.||.|++||...+..+..+........
T Consensus        30 ~l~~~~~~~V~VyS~~Tg~~i---~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~  106 (792)
T KOG1963|consen   30 FLFLCTGNFVKVYSTATGECI---TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA  106 (792)
T ss_pred             EEEEeeCCEEEEEecchHhhh---hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence            334455679999999999888   79999999999999988654   677999999999999998888877654321100


Q ss_pred             -------------------------------CCCcee-------------------EEEEEEecCCeEEEEcCCCCEEEE
Q 004581          177 -------------------------------SGPELC-------------------IWSLLSLRCGTLVSADSTGSVQFW  206 (744)
Q Consensus       177 -------------------------------~~~~~~-------------------v~~~~~~~~~~l~s~~~dg~i~vw  206 (744)
                                                     ..+...                   -.++.+++.|.+.....+..+.+|
T Consensus       107 ~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~  186 (792)
T KOG1963|consen  107 LVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIY  186 (792)
T ss_pred             EEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEE
Confidence                                           000000                   012233333333333344556777


Q ss_pred             eCCCcceEEE----eeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc
Q 004581          207 DSRHGTLLQA----HSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD  282 (744)
Q Consensus       207 d~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  282 (744)
                      +..++.....    -..|.-.++|.+++|+++++++|..||.|.+|.--......            . ....+.-|...
T Consensus       187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~------------~-t~t~lHWH~~~  253 (792)
T KOG1963|consen  187 FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS------------E-TCTLLHWHHDE  253 (792)
T ss_pred             EecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc------------c-cceEEEecccc
Confidence            7765441111    12366678999999999999999999999999754411100            0 13556778889


Q ss_pred             ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcc
Q 004581          283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI  362 (744)
Q Consensus       283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  362 (744)
                      |.+++|+         ++|.                        +|++||..+.+.+|.+.+..+.              
T Consensus       254 V~~L~fS---------~~G~------------------------~LlSGG~E~VLv~Wq~~T~~kq--------------  286 (792)
T KOG1963|consen  254 VNSLSFS---------SDGA------------------------YLLSGGREGVLVLWQLETGKKQ--------------  286 (792)
T ss_pred             cceeEEe---------cCCc------------------------eEeecccceEEEEEeecCCCcc--------------
Confidence            9999998         6665                        9999999999999998874411              


Q ss_pred             ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCce
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKP  441 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v  441 (744)
                                                                    .+-++    ...|..+.+|||+.+.+. ..|+.|
T Consensus       287 ----------------------------------------------fLPRL----gs~I~~i~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  287 ----------------------------------------------FLPRL----GSPILHIVVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             ----------------------------------------------ccccc----CCeeEEEEEcCCCCeEEEEecCceE
Confidence                                                          01111    266888889999988776 588888


Q ss_pred             EEEEeecCCCCCceEEeeeccC------CcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccccc
Q 004581          442 SLFELKKGKVGQGEWIINKRQL------PRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDRE  515 (744)
Q Consensus       442 ~l~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~  515 (744)
                      .+-....-.....   +.....      .+...-.+.++++|--+.++..+..|.|.+||+.+.+.++.+.....+....
T Consensus       317 ~li~~~dl~~k~t---Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~  393 (792)
T KOG1963|consen  317 HLIKASDLEIKST---ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG  393 (792)
T ss_pred             EEEeccchhhhhh---ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence            8887743111111   111000      0112246678889977888888999999999998887777766543333333


Q ss_pred             CCCCCCceEEEEECCCCCEEEEEeC--------CC--cEEEEECCCcc----eEEEEecCCCCceeEEeecCCCCC-eEE
Q 004581          516 IQPSEPPITKMFTSSDGQWLAAVNC--------FG--DVYIFNLEIQR----QHWFISRLEGASVTAAGFPPQNNN-VLI  580 (744)
Q Consensus       516 ~~~~~~~i~~l~~spdg~~las~~~--------dg--~i~iwd~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~-~l~  580 (744)
                      ...+.-.+++++.+-.|.+++|...        ||  .+++|-.+...    +...+..+|+..+.+.+|.+.... .++
T Consensus       394 ~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v  473 (792)
T KOG1963|consen  394 DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV  473 (792)
T ss_pred             cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence            3345667889999999999999742        33  57789776544    333455667755555555442333 899


Q ss_pred             EEecCCeEEEEEcCC-----CccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCC
Q 004581          581 ITTSSNQVYVFDVEA-----KQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR  649 (744)
Q Consensus       581 ~~~~d~~v~vwd~~~-----~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~  649 (744)
                      +++.||.+++|-+.+     .+-..|.|.....    +  |..++..++|+-||  ..+.+.-...+...|+..
T Consensus       474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s----y--~k~~i~a~~fs~dG--slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS----Y--HKTPITALCFSQDG--SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             EeccCCeEEEEEEecccccCcCccceEEeeeec----c--ccCcccchhhcCCC--cEEEEecCCEEEEecCCC
Confidence            999999999999843     2344565554321    2  67899999999997  455555556677778765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=7.9e-22  Score=179.54  Aligned_cols=193  Identities=20%  Similarity=0.324  Sum_probs=161.3

Q ss_pred             eeEEecCCCeEEEEEccC----------------CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCC
Q 004581            7 RLFSSSIDGSVSEWDLYD----------------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSN   70 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~   70 (744)
                      ..++-+..|.|.|||+..                .+++.++.+|.+.=..++|||-..                      
T Consensus       167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~----------------------  224 (440)
T KOG0302|consen  167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT----------------------  224 (440)
T ss_pred             eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc----------------------
Confidence            356778999999999842                367888999999999999999431                      


Q ss_pred             CCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC-CEEEEEe
Q 004581           71 DSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG-NMLYSGS  149 (744)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg-~~l~t~~  149 (744)
                                                 ..|++|..-+.|++|...++.-..-...|.+|+..|-.++|||.. ..|++|+
T Consensus       225 ---------------------------g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS  277 (440)
T KOG0302|consen  225 ---------------------------GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS  277 (440)
T ss_pred             ---------------------------cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee
Confidence                                       378899888999999998765444446788999999999999964 5889999


Q ss_pred             CCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC---cceEEEeecccccee
Q 004581          150 SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH---GTLLQAHSFHKGDVN  225 (744)
Q Consensus       150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~---~~~~~~~~~h~~~v~  225 (744)
                      .||+|+|||++.+.....+..      +.|.+.|..+.|+.+- +|++|+.||+++|||++.   ++++.+++.|..+|+
T Consensus       278 ~DgsIrIWDiRs~~~~~~~~~------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt  351 (440)
T KOG0302|consen  278 CDGSIRIWDIRSGPKKAAVST------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT  351 (440)
T ss_pred             cCceEEEEEecCCCccceeEe------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence            999999999999844333332      1689999999999877 799999999999999985   788999999999999


Q ss_pred             EEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581          226 ALAAAPSH-NRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       226 ~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      ++.|+|.. ..|+++|.|.+|.+||+.-..
T Consensus       352 sieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  352 SIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             EEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            99999954 567788899999999997654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.1e-22  Score=202.09  Aligned_cols=232  Identities=17%  Similarity=0.215  Sum_probs=189.5

Q ss_pred             CCeeEEecCCCeEEEEEccC---CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      ..+||+++..|.|.+||+..   .+++..|..|...|.++.|++...                                 
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep---------------------------------  146 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP---------------------------------  146 (839)
T ss_pred             hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc---------------------------------
Confidence            46799999999999999987   667778999999999999999874                                 


Q ss_pred             CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEcc
Q 004581           82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~  160 (744)
                                      .+|++|+.||+|++||+...+..   .++.+....|..|+|+| .+..++++.+.|.+++||++
T Consensus       147 ----------------~iliSGSQDg~vK~~DlR~~~S~---~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  147 ----------------NILISGSQDGTVKCWDLRSKKSK---STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             ----------------cEEEecCCCceEEEEeeeccccc---ccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence                            48999999999999999877666   67778889999999998 46789999999999999997


Q ss_pred             CCc-eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec-cccceeEEEEcCCCC-EE
Q 004581          161 LGY-EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHN-RV  236 (744)
Q Consensus       161 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~-~l  236 (744)
                      ... +...+.        .|.++|.++.|+|++ +|++|+.|++|+|||+.+++.-..+.. ..++|.++.|-|+.. +|
T Consensus       208 qp~r~~~k~~--------AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hL  279 (839)
T KOG0269|consen  208 QPDRCEKKLT--------AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHL  279 (839)
T ss_pred             CchhHHHHhh--------cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchh
Confidence            643 334444        799999999999988 999999999999999986544333322 257899999999865 45


Q ss_pred             Eeec--CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcc
Q 004581          237 FSTG--SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID  314 (744)
Q Consensus       237 ~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (744)
                      ++++  .|-.|++||++..-.                +-..+..|...+..++|.                         
T Consensus       280 Atcsmv~dtsV~VWDvrRPYI----------------P~~t~~eH~~~vt~i~W~-------------------------  318 (839)
T KOG0269|consen  280 ATCSMVVDTSVHVWDVRRPYI----------------PYATFLEHTDSVTGIAWD-------------------------  318 (839)
T ss_pred             hhhhccccceEEEEeeccccc----------------cceeeeccCccccceecc-------------------------
Confidence            5554  388999999987542                456788999999999984                         


Q ss_pred             ccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          315 FSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       315 ~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                             +.+...+.+++.|+.+..-..+.
T Consensus       319 -------~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  319 -------SGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             -------CCCceeeEeecCccHHHHhhhhc
Confidence                   22334889999999887655543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.4e-21  Score=168.31  Aligned_cols=257  Identities=18%  Similarity=0.247  Sum_probs=184.4

Q ss_pred             CeEEEEecCCeEEEEEec-CCCceeEeecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEccC------C-c--eE
Q 004581           98 RRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKL------G-Y--EI  165 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~~------~-~--~~  165 (744)
                      +++|+++.|++|+|||.. ..+...+....+.|.+.|..+.|.+  -|+.+|+++.|+++.||.-..      | +  ..
T Consensus        26 RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~  105 (361)
T KOG2445|consen   26 RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR  105 (361)
T ss_pred             ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEE
Confidence            799999999999999965 3445556678889999999999965  489999999999999997421      1 1  11


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCc------ceEEEee-------ccccceeEEEE
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHG------TLLQAHS-------FHKGDVNALAA  229 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~------~~~~~~~-------~h~~~v~~l~~  229 (744)
                      ..+.        .....|+.+.|.|..   .|++++.||.+|||+...-      ++...++       .+..+..|+.|
T Consensus       106 ttl~--------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW  177 (361)
T KOG2445|consen  106 TTLV--------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW  177 (361)
T ss_pred             EEee--------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence            2222        577899999999965   7999999999999987542      2223333       35667889999


Q ss_pred             cCC---CCEEEeecCC-----CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581          230 APS---HNRVFSTGSD-----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED  301 (744)
Q Consensus       230 ~~~---~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  301 (744)
                      +|.   ..+|++|+.+     +.++||......             .+|..+..+.+|+.+|++++|+|..+        
T Consensus       178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-------------rKw~kva~L~d~~dpI~di~wAPn~G--------  236 (361)
T KOG2445|consen  178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-------------RKWLKVAELPDHTDPIRDISWAPNIG--------  236 (361)
T ss_pred             ccccccCceEEEEcccCCccccceEEEEecCCc-------------ceeeeehhcCCCCCcceeeeeccccC--------
Confidence            974   4677777665     489999887654             68999999999999999999984332        


Q ss_pred             cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581          302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS  381 (744)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  381 (744)
                      +                     ...+|++++.|| |++|.+..............+               +..      
T Consensus       237 r---------------------~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~---------------~~~------  273 (361)
T KOG2445|consen  237 R---------------------SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAP---------------DLM------  273 (361)
T ss_pred             C---------------------ceeeEEEeecCc-EEEEEEeeccchhhhhcccCC---------------CCc------
Confidence            1                     223899999999 999998753211110000000               000      


Q ss_pred             CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeec
Q 004581          382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKK  448 (744)
Q Consensus       382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~  448 (744)
                      ..+.                     . ........|+..+-.+.|+-.|..|++ |.||.||+|....
T Consensus       274 ~~l~---------------------v-~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  274 TDLP---------------------V-EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             cccc---------------------e-EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            0000                     0 111112456678888999999999988 7999999998765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=4.5e-21  Score=186.48  Aligned_cols=288  Identities=13%  Similarity=0.181  Sum_probs=196.0

Q ss_pred             ccCCeEEEEecCCeEEEEEecCCCcee----EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE--E
Q 004581           95 VEDRRVALACDDGCVRIYRITDSDELI----YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR--I  168 (744)
Q Consensus        95 ~~~~~la~~~~dg~i~iwd~~~~~~~~----~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~--~  168 (744)
                      .....||.+.+||.|.++|.... ...    ..+....|.+.|..+.|-|....|++++.|.++++||+++++.+..  +
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~-~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~  140 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSI-VFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN  140 (720)
T ss_pred             CccceEEEecCCCceeeecchhh-hcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee
Confidence            34569999999999999998621 111    1256668999999999999777899999999999999999888766  4


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcc---------------------------eEEEeec
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT---------------------------LLQAHSF  219 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~  219 (744)
                      .        +|...|-+++|.+++  .|++|+.||.|.|||++-..                           .+....+
T Consensus       141 ~--------GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  141 L--------GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             c--------ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            4        799999999999988  79999999999999986321                           0111223


Q ss_pred             cccceeE---EEEcCCCCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec---cCcceeeeeeccC
Q 004581          220 HKGDVNA---LAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH---THDVRALTVAVPI  292 (744)
Q Consensus       220 h~~~v~~---l~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~  292 (744)
                      +...|.+   +.+..|..+|++++. |+.|++||++........+-.         ....+..|   ...+.++...   
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~---------~~~~~~t~skrs~G~~nL~lD---  280 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR---------GSDKYPTHSKRSVGQVNLILD---  280 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC---------cccCccCcccceeeeEEEEec---
Confidence            4445555   556678889999887 999999999986532111000         01111222   2234444432   


Q ss_pred             CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581          293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH  372 (744)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  372 (744)
                                                    ..+.+|...+.|+.|++|++.....-....                    
T Consensus       281 ------------------------------ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~--------------------  310 (720)
T KOG0321|consen  281 ------------------------------SSGTYLFASCTDNSIYFYNMRSLSISPVAE--------------------  310 (720)
T ss_pred             ------------------------------CCCCeEEEEecCCcEEEEeccccCcCchhh--------------------
Confidence                                          122355555559999999998643211000                    


Q ss_pred             CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCC
Q 004581          373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKV  451 (744)
Q Consensus       373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~  451 (744)
                             ..+.                         ...       ..-..-..+|++.+++.+ .+...++|.+...+.
T Consensus       311 -------~sg~-------------------------~~~-------sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  311 -------FSGK-------------------------LNS-------SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             -------ccCc-------------------------ccc-------eeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence                   0000                         000       011122478999999995 888999999876322


Q ss_pred             CCceEEeeeccCCcccccccEEEEeeC-CCEEEEEeCCCcEEEEEccCC
Q 004581          452 GQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSS  499 (744)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~~~~~dg~i~v~d~~~~  499 (744)
                      ..       ..+.+|...|++++|.|. -.-+++++.|..++||++..+
T Consensus       352 ~~-------~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  352 PP-------ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             Ch-------hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            22       446678889999999763 234556699999999999644

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=6.8e-21  Score=177.99  Aligned_cols=318  Identities=18%  Similarity=0.181  Sum_probs=225.6

Q ss_pred             EEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCe
Q 004581           20 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR   99 (744)
Q Consensus        20 wd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (744)
                      .|+.+..+.....-+.++|++++|+|....                                                ++
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~------------------------------------------------~l  202 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENR------------------------------------------------KL  202 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcc------------------------------------------------eE
Confidence            455555666677788999999999998742                                                38


Q ss_pred             EEEEecCCeEEEEEecCCC-ceeEeecccCccCcEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581          100 VALACDDGCVRIYRITDSD-ELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus       100 la~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      +|+|..-|+|-+||+.+.+ ...-...+..|.++|.++.|+|.. ..+++.+.||+|++-|++++..-..+...      
T Consensus       203 va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~------  276 (498)
T KOG4328|consen  203 VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD------  276 (498)
T ss_pred             EEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC------
Confidence            9999999999999994222 222226677999999999999954 57889999999999999876543333310      


Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcce-EEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTL-LQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      .....+.++.|+.+. .++.++.-|...+||.+++.. ...+..|...|.+++++|.. .+|++++.|++.+|||++.-.
T Consensus       277 ~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~  356 (498)
T KOG4328|consen  277 TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR  356 (498)
T ss_pred             ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence            355667788888777 778888888999999998544 67778899999999999965 578899999999999998754


Q ss_pred             CCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCC
Q 004581          255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD  334 (744)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d  334 (744)
                      ....             ++-....|...|.+..|+         |.+.                        .|++.+.|
T Consensus       357 ~K~s-------------p~lst~~HrrsV~sAyFS---------Ps~g------------------------tl~TT~~D  390 (498)
T KOG4328|consen  357 GKAS-------------PFLSTLPHRRSVNSAYFS---------PSGG------------------------TLLTTCQD  390 (498)
T ss_pred             CCCC-------------cceecccccceeeeeEEc---------CCCC------------------------ceEeeccC
Confidence            2100             133445788888888887         4443                        58888888


Q ss_pred             CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE
Q 004581          335 TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK  414 (744)
Q Consensus       335 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (744)
                      ..|++||..-......                                                          .+..+.
T Consensus       391 ~~IRv~dss~~sa~~~----------------------------------------------------------p~~~I~  412 (498)
T KOG4328|consen  391 NEIRVFDSSCISAKDE----------------------------------------------------------PLGTIP  412 (498)
T ss_pred             CceEEeecccccccCC----------------------------------------------------------ccceee
Confidence            8898888741110000                                                          000000


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581          415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV  494 (744)
Q Consensus       415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~  494 (744)
                        |          +                                .....+. .....+|.||..++++|..-..|-|+
T Consensus       413 --H----------n--------------------------------~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~  447 (498)
T KOG4328|consen  413 --H----------N--------------------------------NRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVF  447 (498)
T ss_pred             --c----------c--------------------------------Ccccccc-cchhheeCCCccEEEEeccCcceeEE
Confidence              0          0                                0000111 23345689999999999998899999


Q ss_pred             EccCCceeeeeccCcccccccCCCCCCceEE-EEECCCCC-EEEEEeCCCcEEEEECC
Q 004581          495 DVSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQ-WLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       495 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~-~las~~~dg~i~iwd~~  550 (744)
                      |-..++.+..+..+          ....|.+ ..|+|-+. ++|.++..|.|+||--+
T Consensus       448 ~~~~~q~v~el~~P----------~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  448 DGNGGQMVCELHDP----------ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cCCCCEEeeeccCc----------cccccccceeecccccceeccCCccceEEEEecC
Confidence            98888877776542          3334544 46999888 55555678889988654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=2.6e-20  Score=171.61  Aligned_cols=323  Identities=17%  Similarity=0.225  Sum_probs=208.7

Q ss_pred             CceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc---------ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEE
Q 004581          179 PELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG---------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL  247 (744)
Q Consensus       179 ~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~i  247 (744)
                      ...++.++.|.++.  .+++|+.|..|++|-+..+         +.+..+..|...|+++.|+|+|+.|++|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            45678889998877  7999999999999987642         234567889999999999999999999999999999


Q ss_pred             EEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcE
Q 004581          248 YKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPM  327 (744)
Q Consensus       248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  327 (744)
                      |....-.....+. ........|.....+++|..+|..++|+         +++.                        .
T Consensus        92 Wk~~~~~~~~~d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws---------~d~~------------------------~  137 (434)
T KOG1009|consen   92 WKQGDVRIFDADT-EADLNKEKWVVKKVLRGHRDDIYDLAWS---------PDSN------------------------F  137 (434)
T ss_pred             EEecCcCCccccc-hhhhCccceEEEEEecccccchhhhhcc---------CCCc------------------------e
Confidence            9877432211121 2233456799999999999999999997         6665                        9


Q ss_pred             EEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCe--EEEEEeeccCCcccCCCCCCCC
Q 004581          328 LISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR--LDILSVRLENNVESRSSSGGHA  405 (744)
Q Consensus       328 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~--i~i~~~~~~~~~~~~~~~~~~~  405 (744)
                      +++++.|..+++||+..........       .+...+..++|.|-.+++++-+..  .+.+.                 
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~-------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~-----------------  193 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILD-------DHEHYVQGVAWDPLNQYVASKSSDRHPEGFS-----------------  193 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeecc-------ccccccceeecchhhhhhhhhccCcccceee-----------------
Confidence            9999999999999998754332211       122344455555544444432110  00000                 


Q ss_pred             CcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEE
Q 004581          406 STSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII  484 (744)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~  484 (744)
                             +.  -...+.++..   ...++- +..+.-+.+++-. +          ..++   .-...++|+|||.+|++
T Consensus       194 -------~~--~~~~~~~~~~---~~m~~~~~~~~e~~s~rLfh-D----------eTlk---sFFrRlsfTPdG~llvt  247 (434)
T KOG1009|consen  194 -------AK--LKQVIKRHGL---DIMPAKAFNEREGKSTRLFH-D----------ETLK---SFFRRLSFTPDGSLLVT  247 (434)
T ss_pred             -------ee--eeeeeeeeee---eEeeecccCCCCcceeeeee-c----------Cchh---hhhhhcccCCCCcEEEc
Confidence                   00  0011111111   000000 1111111111111 0          1111   14567889999999987


Q ss_pred             EeC----CCc-----EEEEEccC-CceeeeeccCcccccccCCCCCCceEEEEECC------------------CCCEEE
Q 004581          485 AGH----DRR-----IYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSS------------------DGQWLA  536 (744)
Q Consensus       485 ~~~----dg~-----i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------------------dg~~la  536 (744)
                      .+.    .+.     .++|+-.. .++...+..           ...+...+.|+|                  -+-.+|
T Consensus       248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-----------~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa  316 (434)
T KOG1009|consen  248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS-----------PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA  316 (434)
T ss_pred             ccceeeeCCceeeceeEeeccccccCceeecCC-----------CCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence            642    222     34444321 123333333           344455555544                  233456


Q ss_pred             EEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581          537 AVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       537 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                      .++.+ .|+|||.++..+...+.+.|-..++.++|++ ||..|++.+.||-.-+-.++..++
T Consensus       317 iAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  317 IATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             Eeecc-eEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence            66554 6999999999999988888889999999999 999999999999888888888876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=6.6e-21  Score=185.32  Aligned_cols=321  Identities=14%  Similarity=0.124  Sum_probs=211.4

Q ss_pred             EEEEEecC--C--eEEEEcCCCCEEEEeCCCcc------eEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581          184 WSLLSLRC--G--TLVSADSTGSVQFWDSRHGT------LLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       184 ~~~~~~~~--~--~l~s~~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                      .+..|++.  .  .|+.+.++|.|.++|.+...      .+.....|.+.|..+.|.|....|++++.|.++++||+...
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            33556542  2  68999999999999987532      23556789999999999997788999999999999999987


Q ss_pred             cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581          254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD  333 (744)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~  333 (744)
                      ..               .-.....+|+..|.+++|.         +.+                       ...|++|+.
T Consensus       133 ~l---------------~G~~~~~GH~~SvkS~cf~---------~~n-----------------------~~vF~tGgR  165 (720)
T KOG0321|consen  133 RL---------------VGGRLNLGHTGSVKSECFM---------PTN-----------------------PAVFCTGGR  165 (720)
T ss_pred             ee---------------ecceeecccccccchhhhc---------cCC-----------------------CcceeeccC
Confidence            63               1123478999999999997         333                       348999999


Q ss_pred             CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581          334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV  413 (744)
Q Consensus       334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (744)
                      ||.|.+||++....-.....+        .                     .++....... .+..+.     .+... -
T Consensus       166 Dg~illWD~R~n~~d~~e~~~--------~---------------------~~~~~~n~~p-tpskp~-----~kr~~-k  209 (720)
T KOG0321|consen  166 DGEILLWDCRCNGVDALEEFD--------N---------------------RIYGRHNTAP-TPSKPL-----KKRIR-K  209 (720)
T ss_pred             CCcEEEEEEeccchhhHHHHh--------h---------------------hhhccccCCC-CCCchh-----hcccc-c
Confidence            999999999854311000000        0                     0000000000 000000     00000 0


Q ss_pred             EecCCCCeEE---EEEcCCCCEEEE-E-cCCceEEEEeecCCCCCceEEeeeccCCcc---cccccEEEEeeCCCEEEEE
Q 004581          414 KSKASRKIIC---STISNSGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKRQLPRK---LQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       414 ~~~~~~~i~~---~~~s~~g~~la~-~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~i~~spd~~~l~~~  485 (744)
                      ...+...|.+   +.+..|...||+ | .|+.|++||+.......+.-......++.+   .-.+.++.....|.+|.+.
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As  289 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS  289 (720)
T ss_pred             cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence            0111223333   445567777777 4 599999999986221111000111122222   2267777777788999988


Q ss_pred             eCCCcEEEEEccCC--ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 004581          486 GHDRRIYVVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG  563 (744)
Q Consensus       486 ~~dg~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~  563 (744)
                      +.|+.|+.|++.+-  .++..+.++..         ..--..-..|||+.+|++|+.|...++|.+.+.+.-..+...|.
T Consensus       290 CtD~sIy~ynm~s~s~sP~~~~sg~~~---------~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght  360 (720)
T KOG0321|consen  290 CTDNSIYFYNMRSLSISPVAEFSGKLN---------SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT  360 (720)
T ss_pred             ecCCcEEEEeccccCcCchhhccCccc---------ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence            88999999999643  33444443211         11112235799999999999999999999999887666667788


Q ss_pred             CceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          564 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       564 ~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      ..|++++|.|..-.-++++++|..+++|++..+
T Consensus       361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            899999999855566888899999999999765

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.8e-21  Score=177.48  Aligned_cols=190  Identities=16%  Similarity=0.219  Sum_probs=156.4

Q ss_pred             CCCeeEEecCCCeEEEEEccCC---ceeE------------------EeeccCcceeEEeeccCCCccccccccccccCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDL---KQKI------------------VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN   62 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~---~~~~------------------~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~   62 (744)
                      +|.++|.|+.|..|.|||+.--   .+..                  .-++|+..|-+|+|+..-+              
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~--------------  256 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR--------------  256 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc--------------
Confidence            4678999999999999998521   1111                  1235777777777776653              


Q ss_pred             ccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC-
Q 004581           63 GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD-  141 (744)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d-  141 (744)
                                                         +.||+|+.|.+|++||+.++++.   .++..|.+.|.+++|+|. 
T Consensus       257 -----------------------------------nVLaSgsaD~TV~lWD~~~g~p~---~s~~~~~k~Vq~l~wh~~~  298 (463)
T KOG0270|consen  257 -----------------------------------NVLASGSADKTVKLWDVDTGKPK---SSITHHGKKVQTLEWHPYE  298 (463)
T ss_pred             -----------------------------------eeEEecCCCceEEEEEcCCCCcc---eehhhcCCceeEEEecCCC
Confidence                                               58999999999999999988887   778889999999999985 


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceE-EEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEe
Q 004581          142 GNMLYSGSSDGYIRSWDAKLGYEI-YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAH  217 (744)
Q Consensus       142 g~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~  217 (744)
                      ..+|++|+.|++|.+.|.+..... ..+         ...+.|-.++|.|..  .++++..||+|+-+|++. ++++.++
T Consensus       299 p~~LLsGs~D~~V~l~D~R~~~~s~~~w---------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~  369 (463)
T KOG0270|consen  299 PSVLLSGSYDGTVALKDCRDPSNSGKEW---------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL  369 (463)
T ss_pred             ceEEEeccccceEEeeeccCccccCceE---------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE
Confidence            568999999999999999842222 222         256788899999988  788999999999999987 5999999


Q ss_pred             eccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581          218 SFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       218 ~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      +.|.++|.+|++++.. .++++++.|+.|++|++....
T Consensus       370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             EeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            9999999999999854 578889999999999998755

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=1e-17  Score=177.91  Aligned_cols=371  Identities=24%  Similarity=0.358  Sum_probs=274.6

Q ss_pred             EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581           30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV  109 (744)
Q Consensus        30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i  109 (744)
                      .+..|...|.++.+.+.+                                                  ..++.++.|+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~--------------------------------------------------~~~~~~~~d~~~   89 (466)
T COG2319          60 LLRGHEDSITSIAFSPDG--------------------------------------------------ELLLSGSSDGTI   89 (466)
T ss_pred             eeeeccceEEEEEECCCC--------------------------------------------------cEEEEecCCCcE
Confidence            456789999999999998                                                  578888899999


Q ss_pred             EEEEecCCC-ceeEeecccCcc-CcEEEEEE-ecCCC-EEEEEeC-CCeEEEEEccC-CceEEEEEecCCCCCCCCceeE
Q 004581          110 RIYRITDSD-ELIYHRSLPRVS-GRVLSVTW-SADGN-MLYSGSS-DGYIRSWDAKL-GYEIYRITVGLGGLGSGPELCI  183 (744)
Q Consensus       110 ~iwd~~~~~-~~~~~~~~~~h~-~~V~~~~~-s~dg~-~l~t~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v  183 (744)
                      .+|+...+. ..   ..+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+.        .|...|
T Consensus        90 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~v  158 (466)
T COG2319          90 KLWDLDNGEKLI---KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--------GHSESV  158 (466)
T ss_pred             EEEEcCCCceeE---EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe--------cCcccE
Confidence            999997554 33   5555533 37777777 88888 5555445 99999999987 67777776        699999


Q ss_pred             EEEEEecCC-eEEEEcC-CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccCcCCCCCC
Q 004581          184 WSLLSLRCG-TLVSADS-TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDG  260 (744)
Q Consensus       184 ~~~~~~~~~-~l~s~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~  260 (744)
                      ..+.|+|++ .+++++. ++.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|++|+...+.      
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~------  232 (466)
T COG2319         159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK------  232 (466)
T ss_pred             EEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc------
Confidence            999999999 7777775 99999999999889999999999999999999998 55555899999999776433      


Q ss_pred             CCcccccceEEEEe-eeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEE
Q 004581          261 LSSSEVIKKWIYVG-SVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA  339 (744)
Q Consensus       261 ~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~  339 (744)
                                 ... .+..|.... ...++         +++                        ..+++++.|+.+++
T Consensus       233 -----------~~~~~~~~~~~~~-~~~~~---------~~~------------------------~~~~~~~~d~~~~~  267 (466)
T COG2319         233 -----------LLRSTLSGHSDSV-VSSFS---------PDG------------------------SLLASGSSDGTIRL  267 (466)
T ss_pred             -----------EEeeecCCCCcce-eEeEC---------CCC------------------------CEEEEecCCCcEEE
Confidence                       133 466666664 22453         333                        37889999999999


Q ss_pred             EecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCC
Q 004581          340 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR  419 (744)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (744)
                      |+......                                                             .+..+ ..|..
T Consensus       268 ~~~~~~~~-------------------------------------------------------------~~~~~-~~~~~  285 (466)
T COG2319         268 WDLRSSSS-------------------------------------------------------------LLRTL-SGHSS  285 (466)
T ss_pred             eeecCCCc-------------------------------------------------------------EEEEE-ecCCc
Confidence            99875331                                                             00011 23357


Q ss_pred             CeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE-eCCCcEEEEEcc
Q 004581          420 KIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-GHDRRIYVVDVS  497 (744)
Q Consensus       420 ~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~-~~dg~i~v~d~~  497 (744)
                      .+.++.++|++..+++ +.++.+.+|+...   ........   ...+...+..+.|.+++..++.+ ..|+.+.+|++.
T Consensus       286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         286 SVLSVAFSPDGKLLASGSSDGTVRLWDLET---GKLLSSLT---LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEcCC---CceEEEee---ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence            7888899998877776 4667789996654   22211111   22333368888884343566666 678899999998


Q ss_pred             CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE-EeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581          498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA-VNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN  576 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~  576 (744)
                      ..........            ...+..+.+++ ...+.. +..++.+.+|+.............. ..+..+.+++ ++
T Consensus       360 ~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~  424 (466)
T COG2319         360 TGKPLKTLEG------------HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSP-DG  424 (466)
T ss_pred             CCceeEEecC------------CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECC-CC
Confidence            7663333332            22288999999 544444 6889999999999988776665432 5899999999 99


Q ss_pred             CeEEEEecCCeEEEEEcCC
Q 004581          577 NVLIITTSSNQVYVFDVEA  595 (744)
Q Consensus       577 ~~l~~~~~d~~v~vwd~~~  595 (744)
                      ..++.++.++.+++|++.+
T Consensus       425 ~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         425 KSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             cEEEEecCCCcEEEEeccC
Confidence            9999999999999999988

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.3e-20  Score=177.59  Aligned_cols=290  Identities=16%  Similarity=0.148  Sum_probs=209.7

Q ss_pred             EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEE--EEcCCCCEEEEeCCC--cce--EEEe
Q 004581          144 MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV--SADSTGSVQFWDSRH--GTL--LQAH  217 (744)
Q Consensus       144 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~--s~~~dg~i~vwd~~~--~~~--~~~~  217 (744)
                      +++..+.| .+++||+...+....+...      .....+.++.|.....|+  +.+.|..|++|.-..  ++.  +...
T Consensus         5 l~~aS~gd-~~kl~D~s~~~~~~~~~~~------t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~   77 (673)
T KOG4378|consen    5 LHVASTGD-KTKLSDFSDLETKSEYVHQ------TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKL   77 (673)
T ss_pred             eeeeccCC-ceEEeecccccCccccccC------CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecc
Confidence            33433444 8999999776555444311      223348999999888444  445677899996542  222  2222


Q ss_pred             eccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCC
Q 004581          218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDP  297 (744)
Q Consensus       218 ~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~  297 (744)
                      .+  ..-.|++......++++||..+.|+|||+....                 +.+.+..|...|+++.+.        
T Consensus        78 ~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----------------~hr~lkdh~stvt~v~YN--------  130 (673)
T KOG4378|consen   78 TG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKL-----------------IHRFLKDHQSTVTYVDYN--------  130 (673)
T ss_pred             cc--chHHHHhhhhcceeeeccCcCceeeehhhHHHH-----------------HhhhccCCcceeEEEEec--------
Confidence            22  244566665566899999999999999999765                 366788999999999985        


Q ss_pred             CCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581          298 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL  377 (744)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  377 (744)
                       -                        ...+|++++..|.|.+..+.+......+.                         
T Consensus       131 -~------------------------~DeyiAsvs~gGdiiih~~~t~~~tt~f~-------------------------  160 (673)
T KOG4378|consen  131 -N------------------------TDEYIASVSDGGDIIIHGTKTKQKTTTFT-------------------------  160 (673)
T ss_pred             -C------------------------CcceeEEeccCCcEEEEecccCcccccee-------------------------
Confidence             2                        22399999999999998887644322211                         


Q ss_pred             EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--EcCCceEEEEeecCCCCCce
Q 004581          378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGE  455 (744)
Q Consensus       378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~  455 (744)
                                                           .+....++-+.++|..+++..  +.+|.|.+||+..   ....
T Consensus       161 -------------------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g---~sp~  200 (673)
T KOG4378|consen  161 -------------------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---MSPI  200 (673)
T ss_pred             -------------------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---CCcc
Confidence                                                 111133445667777776554  6899999999975   2221


Q ss_pred             EEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCE
Q 004581          456 WIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW  534 (744)
Q Consensus       456 ~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  534 (744)
                      .    .-...|..+...|+|+|.. .+|++.+.|..|.+||....+....+.            ...+.+.++|+++|.+
T Consensus       201 ~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------------y~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  201 F----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------------YSHPLSTVAFSECGTY  264 (673)
T ss_pred             c----chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee------------ecCCcceeeecCCceE
Confidence            1    2345677789999999955 567888999999999998777777777            4788999999999999


Q ss_pred             EEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581          535 LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       535 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      |++|+..|.|..||+...+........|...|++++|-|
T Consensus       265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             EEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence            999999999999999987766555566778899999988

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4.6e-21  Score=190.65  Aligned_cols=292  Identities=13%  Similarity=0.131  Sum_probs=215.5

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeC
Q 004581          131 GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS  208 (744)
Q Consensus       131 ~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~  208 (744)
                      ....++...++-..++.++.. .+.|+.+........+....+. .......+..+.|....  +|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~-kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKT-KQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeeccc-ccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            345666777888888888765 7888877553322222111111 00222344556676322  8999999999999999


Q ss_pred             CC---cceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcce
Q 004581          209 RH---GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR  284 (744)
Q Consensus       209 ~~---~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  284 (744)
                      ..   .+++..+..|...++++.|++.. .+|++|+.||.|++||++....                 ...+++.+..|+
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-----------------~~t~~~nSESiR  180 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-----------------KSTFRSNSESIR  180 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-----------------cccccccchhhh
Confidence            86   56677899999999999999854 6788999999999999998763                 455667788888


Q ss_pred             eeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccc
Q 004581          285 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL  364 (744)
Q Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (744)
                      .+.|++         .                       .+..++++...|.+.+||++....                 
T Consensus       181 DV~fsp---------~-----------------------~~~~F~s~~dsG~lqlWDlRqp~r-----------------  211 (839)
T KOG0269|consen  181 DVKFSP---------G-----------------------YGNKFASIHDSGYLQLWDLRQPDR-----------------  211 (839)
T ss_pred             ceeecc---------C-----------------------CCceEEEecCCceEEEeeccCchh-----------------
Confidence            888872         1                       123788888888888888864110                 


Q ss_pred             ccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEE
Q 004581          365 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLF  444 (744)
Q Consensus       365 v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~  444 (744)
                                                                                                      
T Consensus       212 --------------------------------------------------------------------------------  211 (839)
T KOG0269|consen  212 --------------------------------------------------------------------------------  211 (839)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc--eeeeeccCcccccccCCCCCCc
Q 004581          445 ELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTFTPCREEHDREIQPSEPP  522 (744)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~  522 (744)
                               .     ..++..|.+++.++.|+|++.+||+|+.|+.|+|||..+.+  .+.++..            ..+
T Consensus       212 ---------~-----~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT------------iap  265 (839)
T KOG0269|consen  212 ---------C-----EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT------------IAP  265 (839)
T ss_pred             ---------H-----HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee------------cce
Confidence                     0     14456777799999999999999999999999999997554  4455553            678


Q ss_pred             eEEEEECCCCCE-EEEEe--CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          523 ITKMFTSSDGQW-LAAVN--CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       523 i~~l~~spdg~~-las~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      |..+.|-|+.++ ||+++  .|-.|+|||+...-........|...++.++|...|...|.+++.|++|..-.+++.
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            999999998775 55554  477899999987765444445577889999998767788999999998876555544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=3.3e-20  Score=173.49  Aligned_cols=299  Identities=15%  Similarity=0.128  Sum_probs=217.8

Q ss_pred             ecccCccCcEEEEEEecCCC--EEEEEeCCCeEEEEEccCCc----eEEEEEecCCCCCCCCceeEEEEEEecCC--eEE
Q 004581          124 RSLPRVSGRVLSVTWSADGN--MLYSGSSDGYIRSWDAKLGY----EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLV  195 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~--~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~  195 (744)
                      ...+-|.++|++++|+|..+  ++|+|+.-|+|-+||+.+.+    .+..+.        .|..+|.++.|+|.+  +++
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--------~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--------PHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec--------cCCccccceEecCCChhhee
Confidence            45566889999999999654  78888889999999995322    233343        799999999999988  899


Q ss_pred             EEcCCCCEEEEeCCCcce--EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581          196 SADSTGSVQFWDSRHGTL--LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYV  273 (744)
Q Consensus       196 s~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  273 (744)
                      +.+.||+|+.-|++.+..  +.++......+..+.|+.+...++.++.=|...+||++....                ..
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s----------------~~  315 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS----------------EY  315 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc----------------cc
Confidence            999999999999987543  333333455678888998888888888878999999998762                13


Q ss_pred             eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581          274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI  353 (744)
Q Consensus       274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~  353 (744)
                      ..++.|...|.++++.         |-                       ...+|++++.|++.++||++....-.    
T Consensus       316 ~~~~lh~kKI~sv~~N---------P~-----------------------~p~~laT~s~D~T~kIWD~R~l~~K~----  359 (498)
T KOG4328|consen  316 ENLRLHKKKITSVALN---------PV-----------------------CPWFLATASLDQTAKIWDLRQLRGKA----  359 (498)
T ss_pred             hhhhhhhcccceeecC---------CC-----------------------CchheeecccCcceeeeehhhhcCCC----
Confidence            4567788899999997         22                       12389999999999999998633100    


Q ss_pred             CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581          354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF  433 (744)
Q Consensus       354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  433 (744)
                                                                                       .        |     
T Consensus       360 -----------------------------------------------------------------s--------p-----  361 (498)
T KOG4328|consen  360 -----------------------------------------------------------------S--------P-----  361 (498)
T ss_pred             -----------------------------------------------------------------C--------c-----
Confidence                                                                             0        0     


Q ss_pred             EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc----CCceeeeeccCc
Q 004581          434 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS----SSELLHTFTPCR  509 (744)
Q Consensus       434 a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~----~~~~~~~~~~~~  509 (744)
                                           +     .....|...|.++.|||++-.|++.+.|..|+|||..    ...++.++....
T Consensus       362 ---------------------~-----lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~  415 (498)
T KOG4328|consen  362 ---------------------F-----LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN  415 (498)
T ss_pred             ---------------------c-----eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence                                 0     0112233478899999988889999999999999983    333444444211


Q ss_pred             ccccccCCCCCCc--eEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeE-EeecCCCCC-eEEEEecC
Q 004581          510 EEHDREIQPSEPP--ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA-AGFPPQNNN-VLIITTSS  585 (744)
Q Consensus       510 ~~~~~~~~~~~~~--i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~-~l~~~~~d  585 (744)
                      .        +...  .....|.||..++++|..-..|-|||-+.++..+.+.......|.+ ..|+| -+. +++-++..
T Consensus       416 ~--------t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP-~~~~~~aG~~s~  486 (498)
T KOG4328|consen  416 R--------TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP-MRDTLAAGGNSS  486 (498)
T ss_pred             c--------ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc-cccceeccCCcc
Confidence            0        1122  2345799999999999999999999999998777764433334443 57999 666 44445567


Q ss_pred             CeEEEEEcCC
Q 004581          586 NQVYVFDVEA  595 (744)
Q Consensus       586 ~~v~vwd~~~  595 (744)
                      |.|+||.-+.
T Consensus       487 Gki~vft~k~  496 (498)
T KOG4328|consen  487 GKIYVFTNKK  496 (498)
T ss_pred             ceEEEEecCC
Confidence            7999986554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=3.1e-20  Score=179.21  Aligned_cols=317  Identities=17%  Similarity=0.231  Sum_probs=221.6

Q ss_pred             CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC--EEEeecCCCeEEEEEcccC
Q 004581          177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN--RVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~~~~~dg~i~iw~~~~~  253 (744)
                      .+|.+.|.++...|.| .|++|+.||+|+||.+.+|.++.++.. .+.|.|++|+|.+.  .|+++ ....+.+-+..-+
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFG  474 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEE-ecCceEEeCcccc
Confidence            3899999999999999 999999999999999999999999886 67999999999764  33443 3444555443322


Q ss_pred             cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEe--
Q 004581          254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA--  331 (744)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~--  331 (744)
                      ..                      .+...                                         ..+.|+++  
T Consensus       475 ~~----------------------~e~~~-----------------------------------------t~ell~~~~~  491 (733)
T KOG0650|consen  475 DR----------------------LEVGP-----------------------------------------TKELLASAPN  491 (733)
T ss_pred             ch----------------------hhhcc-----------------------------------------hhhhhhcCCC
Confidence            10                      00000                                         00022222  


Q ss_pred             --cCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581          332 --GDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL  409 (744)
Q Consensus       332 --~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  409 (744)
                        ..++.+..|.-.......                                                           .
T Consensus       492 ~~~p~~~~~~W~~~~~~e~~-----------------------------------------------------------~  512 (733)
T KOG0650|consen  492 ESEPDAAVVTWSRASLDELE-----------------------------------------------------------K  512 (733)
T ss_pred             ccCCcccceeechhhhhhhc-----------------------------------------------------------c
Confidence              123344555433211100                                                           0


Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEEE----cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581          410 LVQVKSKASRKIICSTISNSGMLFAYS----DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       410 ~~~~~~~~~~~i~~~~~s~~g~~la~~----~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~  485 (744)
                      -..+...+...|..+.|+..|.||++.    ....|.|+.+......        ..+....+.+.++.|+|...+|+++
T Consensus       513 ~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--------~PF~kskG~vq~v~FHPs~p~lfVa  584 (733)
T KOG0650|consen  513 GVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--------SPFRKSKGLVQRVKFHPSKPYLFVA  584 (733)
T ss_pred             ceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--------CchhhcCCceeEEEecCCCceEEEE
Confidence            122334556889999999999999983    3456777777652111        1222333478899999999999998


Q ss_pred             eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCc
Q 004581          486 GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS  565 (744)
Q Consensus       486 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~  565 (744)
                      +.. .|+|||+...++++.+..           ....|..++++|.|.-|+.++.|+.+..||++-....+....+|...
T Consensus       585 Tq~-~vRiYdL~kqelvKkL~t-----------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a  652 (733)
T KOG0650|consen  585 TQR-SVRIYDLSKQELVKKLLT-----------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA  652 (733)
T ss_pred             ecc-ceEEEehhHHHHHHHHhc-----------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh
Confidence            854 699999998888888776           68889999999999999999999999999998765555555668889


Q ss_pred             eeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccC-CcccccccCCC----ceEEEEeCCCCCCcEEEEEcCc
Q 004581          566 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTF-VLPRRYQEFPG----EVIGLSFSPSPSSSSVIIYSAR  640 (744)
Q Consensus       566 v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~-~~~~~~~~~~~----~v~~i~fspdg~~~~~~~~~~~  640 (744)
                      +++++|++ .-.++++|+.||++.||--.  .+++. -+++. ...+.+.+|..    .|.+..|+|.    .-|+++++
T Consensus       653 vr~Va~H~-ryPLfas~sdDgtv~Vfhg~--VY~Dl-~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~----qpWLfsAG  724 (733)
T KOG0650|consen  653 VRSVAFHK-RYPLFASGSDDGTVIVFHGM--VYNDL-LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR----QPWLFSAG  724 (733)
T ss_pred             hhhhhhcc-ccceeeeecCCCcEEEEeee--eehhh-hcCCceEeeeeccCceeecccceEeecccCC----CceEEecC
Confidence            99999999 88999999999999998532  11111 12332 34567777764    4899999995    24666655


Q ss_pred             eEEEE
Q 004581          641 AMCVI  645 (744)
Q Consensus       641 ~~~~~  645 (744)
                      +.-.|
T Consensus       725 Ad~ti  729 (733)
T KOG0650|consen  725 ADGTI  729 (733)
T ss_pred             CCceE
Confidence            54333

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.86  E-value=1.2e-20  Score=168.67  Aligned_cols=375  Identities=11%  Similarity=0.104  Sum_probs=221.9

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcc
Q 004581          135 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT  212 (744)
Q Consensus       135 ~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~  212 (744)
                      -++|||+|+++|+++.- .+.|=|.++-+..+.+.         --..|.-+.|..|.  .|.....++.|.+|++...+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe   82 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE   82 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------HHHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence            46899999999999865 88888888766554443         23456667888888  45566778999999999888


Q ss_pred             eEEEeeccccceeEEEEcCCCCEEEe-ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeecc
Q 004581          213 LLQAHSFHKGDVNALAAAPSHNRVFS-TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP  291 (744)
Q Consensus       213 ~~~~~~~h~~~v~~l~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  291 (744)
                      ....+....+.+.+++|+|||+.|+. ...|-.|.+|.+.+..                  ...+......+..++|.  
T Consensus        83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------------------~~~~~~pK~~~kg~~f~--  142 (447)
T KOG4497|consen   83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------------------GYLLPHPKTNVKGYAFH--  142 (447)
T ss_pred             eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------------------eEEecccccCceeEEEC--
Confidence            88899888999999999999966664 5569999999998865                  23333444556788886  


Q ss_pred             CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecC---ccCCCCCcccCCCCCCCccccccce
Q 004581          292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN---EFTKFSPHEICPAPQRVPIHLVHNT  368 (744)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~  368 (744)
                             +||+                        +.+.++.-...-.+.+.   ....+...       .......+++
T Consensus       143 -------~dg~------------------------f~ai~sRrDCkdyv~i~~c~~W~ll~~f-------~~dT~Dltgi  184 (447)
T KOG4497|consen  143 -------PDGQ------------------------FCAILSRRDCKDYVQISSCKAWILLKEF-------KLDTIDLTGI  184 (447)
T ss_pred             -------CCCc------------------------eeeeeecccHHHHHHHHhhHHHHHHHhc-------CCCcccccCc
Confidence                   6766                        44333321100000000   00000000       0011233456


Q ss_pred             eecCCeEEEEEeCCeE--EEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEE
Q 004581          369 IFSHTSLLLVQYSCRL--DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFE  445 (744)
Q Consensus       369 ~~s~~~~~l~~~~~~i--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~  445 (744)
                      .++|||..++..++.+  +++...                          -.-.+..++++|.+++|++| .|+.+|+.+
T Consensus       185 eWsPdg~~laVwd~~Leykv~aYe--------------------------~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  185 EWSPDGNWLAVWDNVLEYKVYAYE--------------------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             eECCCCcEEEEecchhhheeeeee--------------------------eccceeEEEeccccceEEeeccchhhhhhc
Confidence            6666666665544311  111110                          01234555666666666664 443333222


Q ss_pred             eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEccCCceee------eeccCc----c--cc
Q 004581          446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLH------TFTPCR----E--EH  512 (744)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~~~~~~------~~~~~~----~--~~  512 (744)
                                                .+.|.|=++++-.++. |-+..+..-++.+.+.      .|.+..    +  ..
T Consensus       239 --------------------------h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s  292 (447)
T KOG4497|consen  239 --------------------------HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES  292 (447)
T ss_pred             --------------------------eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence                                      1223333333221111 1111111101100000      000000    0  00


Q ss_pred             ------------------cccCCCCCCceEEEEECCCCCEEEEEeC--CCcEEEEECCCcceEEEEecCCCCceeEEeec
Q 004581          513 ------------------DREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFISRLEGASVTAAGFP  572 (744)
Q Consensus       513 ------------------~~~~~~~~~~i~~l~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s  572 (744)
                                        ....+...-.+..++||+|..|+|+-..  -+.+.+||++..+....+...|  +|++..|+
T Consensus       293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--piraf~Wd  370 (447)
T KOG4497|consen  293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--PIRAFEWD  370 (447)
T ss_pred             hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc--ceeEEEeC
Confidence                              0011223445778999999999999754  3579999999998877776554  89999999


Q ss_pred             CCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEe
Q 004581          573 PQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID  646 (744)
Q Consensus       573 p~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~  646 (744)
                      | ....|+++.....+++|....-...            ........|..+.|.-+|  +.+++-+..++|..-
T Consensus       371 P-~~prL~vctg~srLY~W~psg~~~V------------~vP~~GF~i~~l~W~~~g--~~i~l~~kDafc~a~  429 (447)
T KOG4497|consen  371 P-GRPRLVVCTGKSRLYFWAPSGPRVV------------GVPKKGFNIQKLQWLQPG--EFIVLCGKDAFCVAI  429 (447)
T ss_pred             C-CCceEEEEcCCceEEEEcCCCceEE------------ecCCCCceeeeEEecCCC--cEEEEEcCCceEEEE
Confidence            9 7677888777778999988764321            122223689999999885  456677777777653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=3.1e-20  Score=166.21  Aligned_cols=333  Identities=14%  Similarity=0.139  Sum_probs=219.1

Q ss_pred             ecccCccCcEEEEEEec-----CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecC---C--e
Q 004581          124 RSLPRVSGRVLSVTWSA-----DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC---G--T  193 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~-----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~--~  193 (744)
                      +....|..+|..++|++     +-+.+||++.+ .+.+|.....-.++.+..-...   .++...+.++|+-|   +  .
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~---d~~Esfytcsw~yd~~~~~p~  107 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADE---DHDESFYTCSWSYDSNTGNPF  107 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCC---CCCcceEEEEEEecCCCCCee
Confidence            34457889999999985     33467777655 8999987654333333322111   46666667777643   2  7


Q ss_pred             EEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581          194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY  272 (744)
Q Consensus       194 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  272 (744)
                      +++|+.-|.|+|.|+.++++...+.+|...|..+.+.|+. +++++++.|..|++|++.+...              -..
T Consensus       108 la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--------------v~V  173 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--------------VAV  173 (385)
T ss_pred             EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--------------EEE
Confidence            8999999999999999999999999999999999999975 7889999999999999998762              111


Q ss_pred             EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581          273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE  352 (744)
Q Consensus       273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  352 (744)
                      ..-..+|...|.++.|+         +++.                        +++++|.|.+|.+|++..........
T Consensus       174 fGG~egHrdeVLSvD~~---------~~gd------------------------~i~ScGmDhslk~W~l~~~~f~~~lE  220 (385)
T KOG1034|consen  174 FGGVEGHRDEVLSVDFS---------LDGD------------------------RIASCGMDHSLKLWRLNVKEFKNKLE  220 (385)
T ss_pred             ecccccccCcEEEEEEc---------CCCC------------------------eeeccCCcceEEEEecChhHHhhhhh
Confidence            33457899999999997         5554                        99999999999999998432111110


Q ss_pred             cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCE
Q 004581          353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGML  432 (744)
Q Consensus       353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  432 (744)
                      .             +..                                                        |+|++..
T Consensus       221 ~-------------s~~--------------------------------------------------------~~~~~t~  231 (385)
T KOG1034|consen  221 L-------------SIT--------------------------------------------------------YSPNKTT  231 (385)
T ss_pred             h-------------hcc--------------------------------------------------------cCCCCcc
Confidence            0             011                                                        2222110


Q ss_pred             EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc-cCCceeeeeccCccc
Q 004581          433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV-SSSELLHTFTPCREE  511 (744)
Q Consensus       433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~  511 (744)
                      .-.-             .....+.+..  ...-|...|-|+.|  =|.++++-+-++.|..|.. +-++.++........
T Consensus       232 ~pfp-------------t~~~~fp~fs--t~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~  294 (385)
T KOG1034|consen  232 RPFP-------------TPKTHFPDFS--TTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA  294 (385)
T ss_pred             CcCC-------------cccccccccc--ccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence            0000             0000000000  11224446667766  3678888888889999987 222222212110000


Q ss_pred             --ccccCCCCCCceEE--EEECCCCCEEEEEeCCCcEEEEECCCcceEE-E--EecCCCCceeEEeecCCCCCeEEEEec
Q 004581          512 --HDREIQPSEPPITK--MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW-F--ISRLEGASVTAAGFPPQNNNVLIITTS  584 (744)
Q Consensus       512 --~~~~~~~~~~~i~~--l~~spdg~~las~~~dg~i~iwd~~~~~~~~-~--~~~~~~~~v~~l~~sp~~~~~l~~~~~  584 (744)
                        .-....-....|.-  .+|.|-+++||.|...|.|++||++..++.. .  .....+..|+..+|+. |+.+|+..++
T Consensus       295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcd  373 (385)
T KOG1034|consen  295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCD  373 (385)
T ss_pred             eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeC
Confidence              00000112334444  4567778999999999999999998776531 1  1112236899999999 9999999999


Q ss_pred             CCeEEEEEcC
Q 004581          585 SNQVYVFDVE  594 (744)
Q Consensus       585 d~~v~vwd~~  594 (744)
                      |++|--||.-
T Consensus       374 d~~Vwrwdrv  383 (385)
T KOG1034|consen  374 DGTVWRWDRV  383 (385)
T ss_pred             CCcEEEEEee
Confidence            9999999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=1.7e-19  Score=161.07  Aligned_cols=284  Identities=16%  Similarity=0.156  Sum_probs=200.3

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCC----c---ee-----EEeec-cCcceeEEeeccCCCccccccccccccCCccccC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDL----K---QK-----IVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND   67 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~----~---~~-----~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~   67 (744)
                      |+|+|.-|++-+.|..+.+|++..-    +   .+     .++.- ....|...+|-+--                    
T Consensus        57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M--------------------  116 (406)
T KOG2919|consen   57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRM--------------------  116 (406)
T ss_pred             eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeecc--------------------
Confidence            7999999999999999999998531    0   00     01110 12344444443221                    


Q ss_pred             CCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCc---EEEEEEecCCCE
Q 004581           68 KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR---VLSVTWSADGNM  144 (744)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~---V~~~~~s~dg~~  144 (744)
                        +..+                     ++..++|+.+.+..|++||..+++.-...+.+ .|...   -.+++|+|||.+
T Consensus       117 --~s~q---------------------P~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGeq  172 (406)
T KOG2919|consen  117 --KSDQ---------------------PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGEQ  172 (406)
T ss_pred             --ccCC---------------------CccceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCCe
Confidence              1111                     12258999999999999999877654222222 34443   468999999999


Q ss_pred             EEEEeCCCeEEEEEc-cCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581          145 LYSGSSDGYIRSWDA-KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHK  221 (744)
Q Consensus       145 l~t~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~  221 (744)
                      |+.|- .++|+++|+ +.|+.-..+..-..+ ..+..+.+.+++|+|..  .++.|+...++-|+.-..+.+++.+.+|.
T Consensus       173 lfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~  250 (406)
T KOG2919|consen  173 LFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG  250 (406)
T ss_pred             Eeecc-cceEEEeeccCCCCCCcchhhhhcc-cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC
Confidence            99775 569999998 556543333221111 22567899999999977  78999999999999988899999999999


Q ss_pred             cceeEEEEcCCCCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc-ceeeeeeccCCCCCCCC
Q 004581          222 GDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD-VRALTVAVPISREDPLP  299 (744)
Q Consensus       222 ~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~~~~  299 (744)
                      +.|+.++|.++|+.|++|.. |-.|..||++....                .+..+..|..+ -..|-|..         
T Consensus       251 gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----------------pv~~L~rhv~~TNQRI~FDl---------  305 (406)
T KOG2919|consen  251 GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----------------PVYALERHVGDTNQRILFDL---------  305 (406)
T ss_pred             CCeeeEEeccCcCeecccccCCCeEEEEeehhccc----------------hhhhhhhhccCccceEEEec---------
Confidence            99999999999999999876 88899999987542                24455566552 23344421         


Q ss_pred             cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE
Q 004581          300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ  379 (744)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  379 (744)
                                            .+.++.|++|+.||.|++||+......      +.........++.++++|--.++++
T Consensus       306 ----------------------d~~~~~LasG~tdG~V~vwdlk~~gn~------~sv~~~~sd~vNgvslnP~mpilat  357 (406)
T KOG2919|consen  306 ----------------------DPKGEILASGDTDGSVRVWDLKDLGNE------VSVTGNYSDTVNGVSLNPIMPILAT  357 (406)
T ss_pred             ----------------------CCCCceeeccCCCccEEEEecCCCCCc------ccccccccccccceecCcccceeee
Confidence                                  223459999999999999999874431      1122234477889999999888888


Q ss_pred             eCCe
Q 004581          380 YSCR  383 (744)
Q Consensus       380 ~~~~  383 (744)
                      .++.
T Consensus       358 ssGq  361 (406)
T KOG2919|consen  358 SSGQ  361 (406)
T ss_pred             ccCc
Confidence            7764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=2.5e-17  Score=174.97  Aligned_cols=357  Identities=25%  Similarity=0.363  Sum_probs=263.9

Q ss_pred             CCCCeeEEecCCCeEEEEEccCCc-eeEEeeccCc-ceeEEee-ccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDLK-QKIVLQSIDF-SIWQMAV-APSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE   79 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~h~~-~i~~v~~-sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (744)
                      ..+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++.                               
T Consensus        75 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  123 (466)
T COG2319          75 PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN-------------------------------  123 (466)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc-------------------------------
Confidence            345668888899999999998887 6777776443 7777777 67662                               


Q ss_pred             CCCCCCcccccccccccCCeEEE-EecCCeEEEEEecC-CCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCeEEE
Q 004581           80 SENDSDSDELHEQSVVEDRRVAL-ACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRS  156 (744)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~la~-~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i~v  156 (744)
                                        ..++. +..|+.+.+|+... ....   ..+..|...|.+++|+|++..+++++. |+.+++
T Consensus       124 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  182 (466)
T COG2319         124 ------------------SILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL  182 (466)
T ss_pred             ------------------eEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCCEEEecCCCCCceEE
Confidence                              13444 34499999999975 3333   778899999999999999999999886 999999


Q ss_pred             EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCe-EEEE-cCCCCEEEEeCCCcceEE-EeeccccceeEEEEcCCC
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSA-DSTGSVQFWDSRHGTLLQ-AHSFHKGDVNALAAAPSH  233 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~s~-~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~  233 (744)
                      |++.++..+..+.        +|...|.+++|+|++. ++.+ +.|+.|++||...+..+. .+..|...+ ...|++++
T Consensus       183 ~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~  253 (466)
T COG2319         183 WDLRTGKPLSTLA--------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG  253 (466)
T ss_pred             EEcCCCceEEeec--------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC
Confidence            9999888888887        6899999999999983 5444 899999999999888887 688888876 44899999


Q ss_pred             CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581          234 NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI  313 (744)
Q Consensus       234 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (744)
                      ..+++++.|+.+++|+......                .......|...+.++.+.         |++.           
T Consensus       254 ~~~~~~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~---------~~~~-----------  297 (466)
T COG2319         254 SLLASGSSDGTIRLWDLRSSSS----------------LLRTLSGHSSSVLSVAFS---------PDGK-----------  297 (466)
T ss_pred             CEEEEecCCCcEEEeeecCCCc----------------EEEEEecCCccEEEEEEC---------CCCC-----------
Confidence            8899999999999999987551                122226778889888885         3332           


Q ss_pred             cccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581          314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN  393 (744)
Q Consensus       314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~  393 (744)
                                   .+++++.|+.+.+|+..........                                          
T Consensus       298 -------------~~~~~~~d~~~~~~~~~~~~~~~~~------------------------------------------  322 (466)
T COG2319         298 -------------LLASGSSDGTVRLWDLETGKLLSSL------------------------------------------  322 (466)
T ss_pred             -------------EEEEeeCCCcEEEEEcCCCceEEEe------------------------------------------
Confidence                         6777888888999976642211000                                          


Q ss_pred             CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCccccccc
Q 004581          394 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAH  471 (744)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  471 (744)
                                       .  ...+...+..+.+.+++..++.+  .++.+.+|++....   ...   .....   ..+.
T Consensus       323 -----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~---~~~~~---~~~~  374 (466)
T COG2319         323 -----------------T--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLK---TLEGH---SNVL  374 (466)
T ss_pred             -----------------e--ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeE---EecCC---ceEE
Confidence                             0  01222346666663332444443  66778888876521   111   11111   1277


Q ss_pred             EEEEeeCCCEEEE-EeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          472 SMIFSYDSSQLII-AGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       472 ~i~~spd~~~l~~-~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      .+.+++ ...++. +..++.+.+|+.........+..           +...+....+++++.++++++.++.+.+|+..
T Consensus       375 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         375 SVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG-----------HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             EEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC-----------CCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence            888888 544444 57889999999988877776664           22789999999999999999999999999998


Q ss_pred             C
Q 004581          551 I  551 (744)
Q Consensus       551 ~  551 (744)
                      +
T Consensus       443 ~  443 (466)
T COG2319         443 T  443 (466)
T ss_pred             C
Confidence            8

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=8.2e-20  Score=172.24  Aligned_cols=273  Identities=16%  Similarity=0.158  Sum_probs=201.1

Q ss_pred             eEEecCCCeEEEEEccCCceeEEeeccC--cceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQSID--FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~--~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      |-.++....+++||.........+..|.  ..+.++.|+.... ++++. .+++..+++|..-.+.   .+...+....-
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas-~~gdk~~~~~~K~g~~---~~Vp~~~k~~g   79 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVAS-MAGDKVMRIKEKDGKT---PEVPRVRKLTG   79 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEee-cCCceeEEEecccCCC---Cccceeecccc
Confidence            3344444589999998755554444333  4488888888664 44443 3444455555443331   11222222222


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                      ..+.++.......++++|+..++|+|||+......   +.+++|+..|+++.++-...+||+++..|.|.|..+.++...
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h---r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH---RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHHHHHh---hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence            25555555566789999999999999999833333   888999999999999999999999999999999999999888


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEE-eeccccceeEEEEcCCC-CEEEeecC
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQA-HSFHKGDVNALAAAPSH-NRVFSTGS  241 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~~~~~  241 (744)
                      ..+..       +....|.-+.|++..  +|.+++.+|.|.+||.....++.. ...|.++...++|+|.+ .+|++.|.
T Consensus       157 t~f~~-------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~  229 (673)
T KOG4378|consen  157 TTFTI-------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY  229 (673)
T ss_pred             cceec-------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence            88773       345567789999987  788899999999999997666654 46799999999999965 56778899


Q ss_pred             CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581          242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      |..|.+||.....                  ........++..+++|.         ++|.                   
T Consensus       230 Dkki~~yD~~s~~------------------s~~~l~y~~Plstvaf~---------~~G~-------------------  263 (673)
T KOG4378|consen  230 DKKINIYDIRSQA------------------STDRLTYSHPLSTVAFS---------ECGT-------------------  263 (673)
T ss_pred             cceEEEeeccccc------------------ccceeeecCCcceeeec---------CCce-------------------
Confidence            9999999998654                  22223445667777775         6665                   


Q ss_pred             cCCCcEEEEecCCCeEEEEecCccC
Q 004581          322 HLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       322 ~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                           +|+.|...|.|..||++..+
T Consensus       264 -----~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  264 -----YLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             -----EEEeecCCceEEEEecccCC
Confidence                 99999999999999998644

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=8.5e-19  Score=156.67  Aligned_cols=292  Identities=12%  Similarity=0.103  Sum_probs=195.7

Q ss_pred             eeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCC-CCCCcccccceEEEEeeeee-ccCcceeeeeeccCCCCCCCCcc
Q 004581          224 VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPN-DGLSSSEVIKKWIYVGSVRA-HTHDVRALTVAVPISREDPLPED  301 (744)
Q Consensus       224 v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~  301 (744)
                      ...+.|+|||..|++-+.|..+.+|++........ ++...      ......++. ....|..-++.+-+.        
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~------~~~~~~~r~~eg~tvydy~wYs~M~--------  117 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN------FSKHLSYRYQEGETVYDYCWYSRMK--------  117 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc------cccceeEEeccCCEEEEEEeeeccc--------
Confidence            45689999999999999999999999986543211 11000      001111111 223344444431111        


Q ss_pred             cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581          302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS  381 (744)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  381 (744)
                                        -..|...++++.+.+.-|.+||.-+.+.-....                             
T Consensus       118 ------------------s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~-----------------------------  150 (406)
T KOG2919|consen  118 ------------------SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR-----------------------------  150 (406)
T ss_pred             ------------------cCCCccceeeeccccCceeeeeccccccccchh-----------------------------
Confidence                              112344578888888888888886643211000                             


Q ss_pred             CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeec
Q 004581          382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKR  461 (744)
Q Consensus       382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~  461 (744)
                          .++                    .+     ..-....+++|+|||..|.+|....|++|++..+......+.....
T Consensus       151 ----~yd--------------------h~-----de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  151 ----AYD--------------------HQ-----DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             ----hhh--------------------hH-----HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence                000                    00     0013346899999999999999999999999653333332222112


Q ss_pred             cCCcccccccEEEEee-CCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC
Q 004581          462 QLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC  540 (744)
Q Consensus       462 ~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~  540 (744)
                      .-.+....+.+++|+| +.+.+++|+....+-||.-..+.++..+-+           |.+.|+.++|.+||+.|.+|..
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-----------h~gGvThL~~~edGn~lfsGaR  270 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-----------HGGGVTHLQWCEDGNKLFSGAR  270 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-----------cCCCeeeEEeccCcCeeccccc
Confidence            1223344788999999 455899999999999999888889998888           9999999999999999999975


Q ss_pred             -CCcEEEEECCCcc-eEEEEecCCCCceeE--EeecCCCCCeEEEEecCCeEEEEEcCC-CccccccccccCCccccccc
Q 004581          541 -FGDVYIFNLEIQR-QHWFISRLEGASVTA--AGFPPQNNNVLIITTSSNQVYVFDVEA-KQLGEWSMQHTFVLPRRYQE  615 (744)
Q Consensus       541 -dg~i~iwd~~~~~-~~~~~~~~~~~~v~~--l~~sp~~~~~l~~~~~d~~v~vwd~~~-~~~~~ws~~~~~~~~~~~~~  615 (744)
                       |-.|..||+.... .++.+.++-...=..  ....| ++++|++|+.||.|++||+++ +.           .+..+..
T Consensus       271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn-----------~~sv~~~  338 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGN-----------EVSVTGN  338 (406)
T ss_pred             CCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCC-----------ccccccc
Confidence             6789999997543 344444322212223  34568 899999999999999999987 53           2344666


Q ss_pred             CCCceEEEEeCCC
Q 004581          616 FPGEVIGLSFSPS  628 (744)
Q Consensus       616 ~~~~v~~i~fspd  628 (744)
                      +..-+.+++++|-
T Consensus       339 ~sd~vNgvslnP~  351 (406)
T KOG2919|consen  339 YSDTVNGVSLNPI  351 (406)
T ss_pred             ccccccceecCcc
Confidence            7789999999996

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=4.3e-19  Score=161.91  Aligned_cols=197  Identities=18%  Similarity=0.271  Sum_probs=157.6

Q ss_pred             CeEEEEecCCeEEEEEecCC-------------CceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCc
Q 004581           98 RRVALACDDGCVRIYRITDS-------------DELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~  163 (744)
                      .+.|+-++.|.|.||++...             .....+.++.+|.+.=+.++|||-.. .|+||..-+.|++|...+|.
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~  245 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS  245 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence            47888899999999998521             12233477889999999999999332 48888888899999998865


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc---ceEEEeeccccceeEEEEcCCCCEEEe
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG---TLLQAHSFHKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~~  238 (744)
                      -...    ... ..+|...|-.++|+|..  .|++|+.||.|+|||++.+   .++.+ +.|.+.|+.|.|+.+..+|++
T Consensus       246 W~vd----~~P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLas  319 (440)
T KOG0302|consen  246 WKVD----QRP-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLAS  319 (440)
T ss_pred             eeec----Ccc-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeee
Confidence            3221    111 12699999999999966  8999999999999999987   34444 889999999999999889999


Q ss_pred             ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581          239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH  318 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (744)
                      |+.||++++||++.-+..              .++..+..|..+|+++.|.         |..                 
T Consensus       320 G~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~---------p~e-----------------  359 (440)
T KOG0302|consen  320 GGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWH---------PHE-----------------  359 (440)
T ss_pred             cCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEec---------ccc-----------------
Confidence            999999999999986531              2477899999999999997         322                 


Q ss_pred             ccccCCCcEEEEecCCCeEEEEecCccC
Q 004581          319 KWAHLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       319 ~w~~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                            ...|+++|.|.+|.+||+....
T Consensus       360 ------~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  360 ------DSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             ------CceEEeccCCCcEEEEEeeccC
Confidence                  2389999999999999997533

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.7e-19  Score=166.90  Aligned_cols=236  Identities=19%  Similarity=0.241  Sum_probs=174.9

Q ss_pred             cCCeEEEEecCCeEEEEEecCCCceeEeec------------------ccCccCcEEEEEEecCC-CEEEEEeCCCeEEE
Q 004581           96 EDRRVALACDDGCVRIYRITDSDELIYHRS------------------LPRVSGRVLSVTWSADG-NMLYSGSSDGYIRS  156 (744)
Q Consensus        96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~v  156 (744)
                      .++++|+|+-|..|.|||+.-...+.+...                  -.+|+..|.+++|+..- ..||+||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            357999999999999999862222111111                  23699999999998754 58899999999999


Q ss_pred             EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcce-EEEeeccccceeEEEEcCCC
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL-LQAHSFHKGDVNALAAAPSH  233 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~  233 (744)
                      ||+.+|++...+.        .|...|.++.|+|..  .|++|+.|++|.+.|.+.... -..++ -.+.|-.++|.|..
T Consensus       271 WD~~~g~p~~s~~--------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s  341 (463)
T KOG0270|consen  271 WDVDTGKPKSSIT--------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS  341 (463)
T ss_pred             EEcCCCCcceehh--------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence            9999999999998        699999999999987  899999999999999984222 23333 36789999999865


Q ss_pred             -CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCC
Q 004581          234 -NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP  312 (744)
Q Consensus       234 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (744)
                       ..++++..||+|+-+|++....                ++.++..|...|.+|+++.                      
T Consensus       342 e~~f~~~tddG~v~~~D~R~~~~----------------~vwt~~AHd~~ISgl~~n~----------------------  383 (463)
T KOG0270|consen  342 ENSFFVSTDDGTVYYFDIRNPGK----------------PVWTLKAHDDEISGLSVNI----------------------  383 (463)
T ss_pred             ceeEEEecCCceEEeeecCCCCC----------------ceeEEEeccCCcceEEecC----------------------
Confidence             5677788899999999998642                4778899999999999861                      


Q ss_pred             ccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE--eCC-eEEEEEe
Q 004581          313 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ--YSC-RLDILSV  389 (744)
Q Consensus       313 ~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~-~i~i~~~  389 (744)
                                ....++++++.|+.+++|++.....-...     ..........+.++.|+-..+..  +.. .+++|++
T Consensus       384 ----------~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-----~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  384 ----------QTPGLLSTASTDKVVKLWKFDVDSPKSVK-----EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             ----------CCCcceeeccccceEEEEeecCCCCcccc-----cccccccceeecccCCCcceEEEecCccceEEEeec
Confidence                      12248999999999999998753321110     11111233455666665443333  322 6889988


Q ss_pred             eccC
Q 004581          390 RLEN  393 (744)
Q Consensus       390 ~~~~  393 (744)
                      ....
T Consensus       449 ~~~~  452 (463)
T KOG0270|consen  449 FTNS  452 (463)
T ss_pred             ccCh
Confidence            7554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.83  E-value=4.2e-19  Score=158.94  Aligned_cols=399  Identities=14%  Similarity=0.149  Sum_probs=249.9

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      +||.|.++|+++.- .+.|=|.+|.+..+.|.. -..|..+.|..|..+                               
T Consensus        16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~-------------------------------   62 (447)
T KOG4497|consen   16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCH-------------------------------   62 (447)
T ss_pred             ECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeecccee-------------------------------
Confidence            36677888888865 888889988777766554 466778888887742                               


Q ss_pred             CCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCE-EEEEeCCCeEEEEEc
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM-LYSGSSDGYIRSWDA  159 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~-l~t~~~dg~i~vwd~  159 (744)
                                        .|...+.|+.|.+|++...+-.   ..+.....++.+++|||||+. |.+..-|-.|.||.+
T Consensus        63 ------------------ilC~~yk~~~vqvwsl~Qpew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL  121 (447)
T KOG4497|consen   63 ------------------ILCVAYKDPKVQVWSLVQPEWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSL  121 (447)
T ss_pred             ------------------eeeeeeccceEEEEEeecceeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence                              4667789999999999744333   666777789999999999965 555666999999999


Q ss_pred             cCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEE-EcCCCC---EEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581          160 KLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVS-ADSTGS---VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR  235 (744)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s-~~~dg~---i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  235 (744)
                      .+.+....-.         ....+..++|+|||++++ .+....   +.+..-+.-..+..+...+-+.+.+.|+|||+.
T Consensus       122 ~t~~~~~~~~---------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~  192 (447)
T KOG4497|consen  122 NTQKGYLLPH---------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW  192 (447)
T ss_pred             ccceeEEecc---------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence            8876654432         345568899999995444 332211   222222234455667777778899999999988


Q ss_pred             EEeecC--CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCc
Q 004581          236 VFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI  313 (744)
Q Consensus       236 l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (744)
                      |++-..  +-.|..|...                             -.+..++++         |.++           
T Consensus       193 laVwd~~Leykv~aYe~~-----------------------------lG~k~v~ws---------P~~q-----------  223 (447)
T KOG4497|consen  193 LAVWDNVLEYKVYAYERG-----------------------------LGLKFVEWS---------PCNQ-----------  223 (447)
T ss_pred             EEEecchhhheeeeeeec-----------------------------cceeEEEec---------cccc-----------
Confidence            776322  3333333322                             235566775         4444           


Q ss_pred             cccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581          314 DFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN  393 (744)
Q Consensus       314 ~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~  393 (744)
                                   +|+.|+.|+.+++.+--+.+.+...........+....+..-.++                      
T Consensus       224 -------------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~----------------------  268 (447)
T KOG4497|consen  224 -------------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS----------------------  268 (447)
T ss_pred             -------------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc----------------------
Confidence                         999999999999877655443332210000000000000000000                      


Q ss_pred             CcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEee-eccCCcccccccE
Q 004581          394 NVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN-KRQLPRKLQFAHS  472 (744)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~  472 (744)
                                            .-.-...|+.|.|..--.-..... -.+|+...  -..++-.++ ....+.....+.-
T Consensus       269 ----------------------~~ql~~~cLsf~p~~~~a~~~~~s-e~~YE~~~--~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  269 ----------------------IVQLLHHCLSFTPTDLEAHIWEES-ETIYEQQM--TPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ----------------------hhhhcccccccCCCccccCccccc-hhhhhhhh--cceeeecccCCCCCCCcccccce
Confidence                                  000111233333321000000000 00111111  001100000 0112222337788


Q ss_pred             EEEeeCCCEEEEEeC--CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          473 MIFSYDSSQLIIAGH--DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       473 i~~spd~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      ++||+|..++++-..  -+.+.+||++..++-..+..            ..+|....|.|....|+.+.....+++|...
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ------------k~piraf~WdP~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ------------KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh------------ccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence            999999999998765  36899999998777666663            7789999999999999998888889999988


Q ss_pred             CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581          551 IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN  586 (744)
Q Consensus       551 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~  586 (744)
                      .......- . .+-.|..+.|+- +|+.++..+.|.
T Consensus       392 g~~~V~vP-~-~GF~i~~l~W~~-~g~~i~l~~kDa  424 (447)
T KOG4497|consen  392 GPRVVGVP-K-KGFNIQKLQWLQ-PGEFIVLCGKDA  424 (447)
T ss_pred             CceEEecC-C-CCceeeeEEecC-CCcEEEEEcCCc
Confidence            86554333 2 346899999999 999999999997

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=1.2e-17  Score=159.34  Aligned_cols=401  Identities=13%  Similarity=0.123  Sum_probs=242.8

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ..++.++.||.+.|-+-. ++.-   +....|.+.|.|-.|+|||.-|+|+++||.|++|. ++|-....+.        
T Consensus        76 d~~~i~s~DGkf~il~k~-~rVE---~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~--------  142 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-ARVE---RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV--------  142 (737)
T ss_pred             ceEEEEcCCceEEEeccc-chhh---hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh--------
Confidence            489999999999998764 3222   78889999999999999999999999999999998 4665555544        


Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      .....|+|++|.|+. .++. +..+++.|=-+.....+-..++|.+-|.++.|++..+.+++||.|-..++||.....  
T Consensus       143 Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~--  219 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSNSIVF-CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN--  219 (737)
T ss_pred             hcCceeEEEEECCCCCceEE-ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc--
Confidence            477899999999998 3333 334567776666666677889999999999999999999999999999999987755  


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                      +..-..|..+|++++|+         |+ +                        .++.++. .+
T Consensus       220 ----------------Lf~S~~~ey~ITSva~n---------pd-~------------------------~~~v~S~-nt  248 (737)
T KOG1524|consen  220 ----------------LFTSAAEEYAITSVAFN---------PE-K------------------------DYLLWSY-NT  248 (737)
T ss_pred             ----------------cccCChhccceeeeeec---------cc-c------------------------ceeeeee-ee
Confidence                            45667899999999997         54 3                        4555442 23


Q ss_pred             EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE--
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK--  414 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  414 (744)
                      +++                  ..+..+.+..++||+||..++++.....+.....-+..-...........++..+..  
T Consensus       249 ~R~------------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV  310 (737)
T KOG1524|consen  249 ARF------------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDV  310 (737)
T ss_pred             eee------------------cCCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehh
Confidence            331                  112337788999999999988775532222111100000000000000001111110  


Q ss_pred             -------ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeecc--CCcccc-------cccEEEEeeC
Q 004581          415 -------SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQ--LPRKLQ-------FAHSMIFSYD  478 (744)
Q Consensus       415 -------~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~-------~v~~i~~spd  478 (744)
                             ......+...+  -.-.+|+++....+++|.-... ....+.+.+...  +.....       ..+--.|+-+
T Consensus       311 ~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys~knw-ntpiiidgre~tr~lieq~ek~fli~dgsSi~lytye  387 (737)
T KOG1524|consen  311 ATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYSEKNW-NTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYE  387 (737)
T ss_pred             hhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEecCCc-cCcEEEeccccchhHhhhhhhheEEecCcEEEEEEec
Confidence                   11123333333  2335566667777777765431 111111111000  000000       0000011111


Q ss_pred             CC-------------------------EEEEEeC--CCcEEEEEc-cCCceeeeeccCcccccccCCCCCCceEEEEEC-
Q 004581          479 SS-------------------------QLIIAGH--DRRIYVVDV-SSSELLHTFTPCREEHDREIQPSEPPITKMFTS-  529 (744)
Q Consensus       479 ~~-------------------------~l~~~~~--dg~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-  529 (744)
                      |+                         .|+.-..  ...+.+||. .+|+...         +...-.|...|..++.. 
T Consensus       388 gR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qg---------Dgk~L~hk~~IveIAldq  458 (737)
T KOG1524|consen  388 GRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQG---------DGKSLRHKQQIVEIALDQ  458 (737)
T ss_pred             CceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccC---------CccccchhhhHHHhHhhc
Confidence            11                         1221111  123344444 2332211         11112366666666653 


Q ss_pred             ---CCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581          530 ---SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       530 ---pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                         ++.+.+|.-+.++.++|=.+++......+... +..|..++|+.  ..-++++-.|+.+.||=..+..+
T Consensus       459 kG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki-GTmVhtLawnd--ttNiLcglqDt~fsVWy~pn~vy  527 (737)
T KOG1524|consen  459 KGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI-GTMVHTLAWND--TTNILCGLQDTCFSVWYYPNEVY  527 (737)
T ss_pred             cCCCccceEEEEecCCcEEEEeehhcCchhhhhhh-hhhhhhhhhcc--ccceeeeeccceEEEEEcCCcce
Confidence               46678888888888888877654433333222 35789999995  45577888999999998876654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=2.1e-19  Score=156.00  Aligned_cols=311  Identities=16%  Similarity=0.125  Sum_probs=198.8

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCE
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSV  203 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i  203 (744)
                      ..+++|.+.|+++.|..+++ |.+|...|.|++|++.+.+....+..       .+...|+.+...|++.+.+-+.|+.+
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-------~g~~~it~lq~~p~d~l~tqgRd~~L   79 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-------FGRLFITNLQSIPNDSLDTQGRDPLL   79 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-------hccceeeceeecCCcchhhcCCCceE
Confidence            56779999999999988765 99999999999999999888877764       47788999999999999999999999


Q ss_pred             EEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-eEEEEEcccCcCCCCCCCCcccccceEEEEe--eeeecc
Q 004581          204 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVILYKASCESIGPNDGLSSSEVIKKWIYVG--SVRAHT  280 (744)
Q Consensus       204 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~  280 (744)
                      .+|++..+..+.   .|.-.++++-|++-.  +...+... ....+.-+....    ..........-.++.  .-.+..
T Consensus        80 ~lw~ia~s~~i~---i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde----~h~~D~g~~tqv~i~dd~~~~Kl  150 (323)
T KOG0322|consen   80 ILWTIAYSAFIS---IHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE----THKQDGGDTTQVQIADDSERSKL  150 (323)
T ss_pred             EEEEccCcceEE---Eeeeeccccccccce--eccCCCcchhheecCCcccch----hhhhccCccceeEccCchhcccc
Confidence            999998655443   234455666665432  22222211 111111111000    000000000000000  001111


Q ss_pred             CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581          281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV  360 (744)
Q Consensus       281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  360 (744)
                      +.+.+..+.                              .+.....+++.|-++|.+.+||+.+.........       
T Consensus       151 gsvmc~~~~------------------------------~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-------  193 (323)
T KOG0322|consen  151 GSVMCQDKD------------------------------HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-------  193 (323)
T ss_pred             Cceeeeecc------------------------------ccccceEEEEEeccCCeEEEEEccCCceeecccc-------
Confidence            222222210                              0011223688888999999999987532221110       


Q ss_pred             ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCC
Q 004581          361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHV  439 (744)
Q Consensus       361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~  439 (744)
                                               .|.+                     ..-...|..++.++.+.+.-..=+. +.+.
T Consensus       194 -------------------------~~kv---------------------~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  194 -------------------------SSKV---------------------ESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             -------------------------cccc---------------------ccchhhccCcceeeeechhhcCCcCCCccc
Confidence                                     0110                     0111234466777777654333233 4666


Q ss_pred             ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCC
Q 004581          440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS  519 (744)
Q Consensus       440 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  519 (744)
                      .+..|+++...+...+   . .+..-....+..+.+-||++.+|+++.|+.|+||..++..++..++-           |
T Consensus       228 kl~~~Sl~~s~gslq~---~-~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-----------H  292 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQI---R-KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-----------H  292 (323)
T ss_pred             cceeeeeccccCcccc---c-ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-----------h
Confidence            7778887752222222   1 11122233788999999999999999999999999999999999998           9


Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~  549 (744)
                      ...|++++|+||...+|+++.|++|.+|++
T Consensus       293 sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.4e-18  Score=163.51  Aligned_cols=124  Identities=24%  Similarity=0.365  Sum_probs=112.2

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADST  200 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~d  200 (744)
                      +.|.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.++.+..       +|...|.++.|.|..   .+++|..|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCeEEEeccCc
Confidence            78899999999999999999999999999999999998889998886       899999999999854   78999999


Q ss_pred             CCEEEEeCCC----------cceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCc
Q 004581          201 GSVQFWDSRH----------GTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       201 g~i~vwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      ..|+++|+..          .+.+..+..|...|..|+..|++ +.+.+++.||+|+.+|++...
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            9999999984          23445667899999999999998 788899999999999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.4e-19  Score=188.65  Aligned_cols=234  Identities=17%  Similarity=0.258  Sum_probs=187.5

Q ss_pred             CeeEEecCCCeEEEEEccCC------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581            6 GRLFSSSIDGSVSEWDLYDL------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE   79 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (744)
                      +.||.|..||.|.+||....      ..+.++..|.+.|..+.|++.+.                               
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~-------------------------------  129 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG-------------------------------  129 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC-------------------------------
Confidence            45889999999999998752      35567888999999999999983                               


Q ss_pred             CCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeeccc--CccCcEEEEEEecC-CCEEEEEeCCCeEEE
Q 004581           80 SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSAD-GNMLYSGSSDGYIRS  156 (744)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~d-g~~l~t~~~dg~i~v  156 (744)
                                        +.||+|+.||.|.|||+..-+..   ..+.  .-.+.|.+++|+.. ...|++++.+|.+.|
T Consensus       130 ------------------nlLASGa~~geI~iWDlnn~~tP---~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i  188 (1049)
T KOG0307|consen  130 ------------------NLLASGADDGEILIWDLNKPETP---FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI  188 (1049)
T ss_pred             ------------------ceeeccCCCCcEEEeccCCcCCC---CCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence                              48999999999999999754333   2221  24568999999864 457889999999999


Q ss_pred             EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCC---CEEEEeCCC-cceEEEeeccccceeEEEEc
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTG---SVQFWDSRH-GTLLQAHSFHKGDVNALAAA  230 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg---~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~  230 (744)
                      ||++..+.+-.+...      .....+..+.|+|++  +|++++.|.   .|.+||++. ...++.+++|...|.++.|+
T Consensus       189 WDlr~~~pii~ls~~------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc  262 (1049)
T KOG0307|consen  189 WDLRKKKPIIKLSDT------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC  262 (1049)
T ss_pred             ccccCCCcccccccC------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence            999998888777632      223568899999999  676666554   499999985 56778899999999999999


Q ss_pred             CCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCC
Q 004581          231 PSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR  309 (744)
Q Consensus       231 ~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~  309 (744)
                      +.+ .+|++++.|+.|.+|+.++++.                 +..+....+.+..+.|+                    
T Consensus       263 ~~D~~lllSsgkD~~ii~wN~~tgEv-----------------l~~~p~~~nW~fdv~w~--------------------  305 (1049)
T KOG0307|consen  263 PQDPRLLLSSGKDNRIICWNPNTGEV-----------------LGELPAQGNWCFDVQWC--------------------  305 (1049)
T ss_pred             CCCchhhhcccCCCCeeEecCCCceE-----------------eeecCCCCcceeeeeec--------------------
Confidence            976 8899999999999999999773                 56666666677777775                    


Q ss_pred             CCCccccccccccCCCcEEEEecCCCeEEEEecCccC
Q 004581          310 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       310 ~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                                  ..+..+++.++.||.|.+|.+....
T Consensus       306 ------------pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  306 ------------PRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ------------CCCcchhhhheeccceeeeeeecCC
Confidence                        2233489999999999999998654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6e-18  Score=152.71  Aligned_cols=286  Identities=16%  Similarity=0.121  Sum_probs=200.2

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      .++|++...|.|++||..+++.+..|++|...+..|+|..+..                                     
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds-------------------------------------   83 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS-------------------------------------   83 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCC-------------------------------------
Confidence            3588888999999999999999999999999999999987531                                     


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCcc-CcEEEEEEecCCCEEEEEeC----CCeEEEEEcc
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGSS----DGYIRSWDAK  160 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~dg~~l~t~~~----dg~i~vwd~~  160 (744)
                                 ...+.+++.||+|++||+....+... ..+.+|. .+..|++-+-.++.+++|..    +-.|.+||++
T Consensus        84 -----------~h~v~s~ssDG~Vr~wD~Rs~~e~a~-~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR  151 (376)
T KOG1188|consen   84 -----------PHGVISCSSDGTVRLWDIRSQAESAR-ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVR  151 (376)
T ss_pred             -----------CCeeEEeccCCeEEEEEeecchhhhh-eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEec
Confidence                       04788999999999999986555422 3444555 56778887777888888864    6689999998


Q ss_pred             CCce-EEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc----ceEEEeeccccceeEEEEcCCC
Q 004581          161 LGYE-IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG----TLLQAHSFHKGDVNALAAAPSH  233 (744)
Q Consensus       161 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~  233 (744)
                      ..+. +..+..       .|...|+++.|+|..  .|++|+.||-|.++|++..    .++.++ .|...|.++.|..++
T Consensus       152 ~~qq~l~~~~e-------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  152 SEQQLLRQLNE-------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKK  223 (376)
T ss_pred             cccchhhhhhh-------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCC
Confidence            8776 555543       699999999999988  8999999999999999743    223333 367789999999877


Q ss_pred             -CEEEeecCCCeEEEEEcccCcCCCCCC---CCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCC
Q 004581          234 -NRVFSTGSDGQVILYKASCESIGPNDG---LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR  309 (744)
Q Consensus       234 -~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~  309 (744)
                       +.|.+-+...+..+|+++.+.......   +........|.+-..+..|.                             
T Consensus       224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-----------------------------  274 (376)
T KOG1188|consen  224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS-----------------------------  274 (376)
T ss_pred             cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-----------------------------
Confidence             568888999999999998875311100   00000011111111111111                             


Q ss_pred             CCCccccccccccCCCcEEEEecC-CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC--CeEEE
Q 004581          310 EKPIDFSYHKWAHLGVPMLISAGD-DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS--CRLDI  386 (744)
Q Consensus       310 ~~~~~~~~~~w~~~~~~~l~s~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~i~i  386 (744)
                                  +.+....+.++. -+...++.+..............++..+...++++.|...+.++.++.  +.+.+
T Consensus       275 ------------~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~  342 (376)
T KOG1188|consen  275 ------------PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA  342 (376)
T ss_pred             ------------CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence                        112234444444 566666666543333333333455666778899999988888888774  58888


Q ss_pred             EEe
Q 004581          387 LSV  389 (744)
Q Consensus       387 ~~~  389 (744)
                      |..
T Consensus       343 Wk~  345 (376)
T KOG1188|consen  343 WKV  345 (376)
T ss_pred             Eec
Confidence            885

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=148.57  Aligned_cols=298  Identities=15%  Similarity=0.217  Sum_probs=197.9

Q ss_pred             CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEee-ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      +|...|+++.|-.+++|++|..-|.|.+|++++.+.+..++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++....  
T Consensus        12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~--   88 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA--   88 (323)
T ss_pred             cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc--
Confidence            68899999999999999999999999999999998888888 67788999999987 468899999999999998744  


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC-
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT-  335 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~-  335 (744)
                                        ....|+-.+.++.|...                                   -+...+... 
T Consensus        89 ------------------~i~i~Si~~nslgFCrf-----------------------------------Sl~~~~k~~e  115 (323)
T KOG0322|consen   89 ------------------FISIHSIVVNSLGFCRF-----------------------------------SLVKKPKNSE  115 (323)
T ss_pred             ------------------eEEEeeeeccccccccc-----------------------------------eeccCCCcch
Confidence                              23445555666666410                                   011111110 


Q ss_pred             eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe
Q 004581          336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS  415 (744)
Q Consensus       336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (744)
                      .+..|+-+.........   .      ..-.                .+.+-  ...                     ..
T Consensus       116 qll~yp~rgsde~h~~D---~------g~~t----------------qv~i~--dd~---------------------~~  147 (323)
T KOG0322|consen  116 QLLEYPSRGSDETHKQD---G------GDTT----------------QVQIA--DDS---------------------ER  147 (323)
T ss_pred             hheecCCcccchhhhhc---c------Cccc----------------eeEcc--Cch---------------------hc
Confidence            11111111110000000   0      0000                00000  000                     00


Q ss_pred             cCCCCeEEEEEc-CCCC-E-EEEE-cCCceEEEEeecCCCCCce---EEeeeccCCcccccccEEEEeeCCCEEEEEeCC
Q 004581          416 KASRKIICSTIS-NSGM-L-FAYS-DHVKPSLFELKKGKVGQGE---WIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD  488 (744)
Q Consensus       416 ~~~~~i~~~~~s-~~g~-~-la~~-~~~~v~l~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~d  488 (744)
                      ...+.+.|..+. .+++ + +++| .++.+.+|++..++..+.+   |... .....|..++.++.|.+.-..=++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~-~~~ash~qpvlsldyas~~~rGisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVE-SPNASHKQPVLSLDYASSCDRGISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccc-cchhhccCcceeeeechhhcCCcCCCcc
Confidence            111233333322 1232 3 3445 8899999999874322221   1111 2334566689999998776777888888


Q ss_pred             CcEEEEEccC--Cce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCC
Q 004581          489 RRIYVVDVSS--SEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGA  564 (744)
Q Consensus       489 g~i~v~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~  564 (744)
                      ..+..|+++.  +.+  ...+.-           ..-.|..+.+-||++.+|+++.|+.|+||+.++.+++..+. +|.+
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~l-----------knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsa  294 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEITL-----------KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSA  294 (323)
T ss_pred             ccceeeeeccccCcccccceEEe-----------cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhc
Confidence            8899999862  322  111221           24558889999999999999999999999999999988874 5778


Q ss_pred             ceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581          565 SVTAAGFPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       565 ~v~~l~~sp~~~~~l~~~~~d~~v~vwd~  593 (744)
                      .|.+++|+| +.+.+|.++.|++|-+|++
T Consensus       295 gvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  295 GVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            999999999 8899999999999999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=7.2e-18  Score=148.37  Aligned_cols=238  Identities=22%  Similarity=0.249  Sum_probs=175.1

Q ss_pred             eEEEEEccC---------CceeEEee-ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581           16 SVSEWDLYD---------LKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus        16 ~i~iwd~~~---------~~~~~~~~-~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      .+.||.+..         .+++..|. .+-+.|.|+.|.|+++                                     
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-------------------------------------  136 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-------------------------------------  136 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-------------------------------------
Confidence            567998864         33444555 4557999999999984                                     


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEe---ecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEcc
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH---RSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~---~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~  160 (744)
                                   .||+-. |..|.+|++..+..+...   ..-..|+...++-+|||  ||+.+++.+ |++++.||++
T Consensus       137 -------------klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~R  201 (370)
T KOG1007|consen  137 -------------KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLR  201 (370)
T ss_pred             -------------eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEcc
Confidence                         555544 789999999865542110   11124677889999998  888888875 7799999999


Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCC-CEE
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSH-NRV  236 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~-~~l  236 (744)
                      +..+...+..       .|...|..+.|+|+.  .|++++.||.|+|||.+. ..+++++.+|...|.++.|+|.. ++|
T Consensus       202 T~~~~~sI~d-------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  202 TMKKNNSIED-------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             chhhhcchhh-------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence            9988888874       688999999999998  799999999999999985 66789999999999999999964 678


Q ss_pred             EeecCCCeEEEEEcccCcCC----CCCCCCccc-----cc---ceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccc
Q 004581          237 FSTGSDGQVILYKASCESIG----PNDGLSSSE-----VI---KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK  304 (744)
Q Consensus       237 ~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~-----~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  304 (744)
                      ++++.|..|.+|....-...    ..+......     ..   -.=-.+..+..|...|++++|+         .     
T Consensus       275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS---------s-----  340 (370)
T KOG1007|consen  275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS---------S-----  340 (370)
T ss_pred             EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec---------c-----
Confidence            89999999999987643210    000000000     00   0011244667899999999996         1     


Q ss_pred             ccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          305 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       305 ~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                                  ...|      .+++-+.||.+.+-.+..
T Consensus       341 ------------adPW------iFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  341 ------------ADPW------IFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ------------CCCe------eEEEeccCceEEeecCCh
Confidence                        1224      899999999998866654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=150.60  Aligned_cols=288  Identities=15%  Similarity=0.151  Sum_probs=189.6

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecC-C--eEEEEcCCCCEEEEeCCCcceEE--Ee
Q 004581          143 NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC-G--TLVSADSTGSVQFWDSRHGTLLQ--AH  217 (744)
Q Consensus       143 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~s~~~dg~i~vwd~~~~~~~~--~~  217 (744)
                      ..+|++...|.|++||..+|+.+..++        +++..+..+.|..+ +  .+.+++.||+|++||+++.....  .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk--------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK--------GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec--------CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec
Confidence            568888899999999999999999998        68888888999875 3  79999999999999999865443  34


Q ss_pred             eccc-cceeEEEEcCCCCEEEeecC----CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccC
Q 004581          218 SFHK-GDVNALAAAPSHNRVFSTGS----DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPI  292 (744)
Q Consensus       218 ~~h~-~~v~~l~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  292 (744)
                      ..+. .+..|++....++.+++|..    |-.|.+||++..++.               .-.....|..+|+++.|.   
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------l~~~~eSH~DDVT~lrFH---  174 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------LRQLNESHNDDVTQLRFH---  174 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch---------------hhhhhhhccCcceeEEec---
Confidence            4555 56778888777887887753    778999999986631               012346799999999997   


Q ss_pred             CCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecC
Q 004581          293 SREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSH  372 (744)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  372 (744)
                            |                       .+.++|++|+.||.+.+||+........                      
T Consensus       175 ------P-----------------------~~pnlLlSGSvDGLvnlfD~~~d~EeDa----------------------  203 (376)
T KOG1188|consen  175 ------P-----------------------SDPNLLLSGSVDGLVNLFDTKKDNEEDA----------------------  203 (376)
T ss_pred             ------C-----------------------CCCCeEEeecccceEEeeecCCCcchhh----------------------
Confidence                  2                       2345999999999999999875210000                      


Q ss_pred             CeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCC
Q 004581          373 TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVG  452 (744)
Q Consensus       373 ~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~  452 (744)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (376)
T KOG1188|consen  204 --------------------------------------------------------------------------------  203 (376)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceEEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEEEEccCCceeeeeccCcccc--cccCCCCCCceEEEEEC
Q 004581          453 QGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH--DREIQPSEPPITKMFTS  529 (744)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~s  529 (744)
                        +     .....+...|..+.|..++ ++|.+-+..++..+|+++.+.....+..+....  .+... ....+-..-..
T Consensus       204 --L-----~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~-~~dY~I~~~~~  275 (376)
T KOG1188|consen  204 --L-----LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED-NCDYVINEHSP  275 (376)
T ss_pred             --H-----HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh-hhhheeecccC
Confidence              0     0011122245555555444 345556666677777777666444443211000  00000 01111111112


Q ss_pred             CCCCEEEEEeC-CCcEEEEECC------CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          530 SDGQWLAAVNC-FGDVYIFNLE------IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       530 pdg~~las~~~-dg~i~iwd~~------~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      .++..++.++. .+...++-+.      ..+....+.++|..-|+++.|.. .+.+|.+|+.||.+.+|..+..
T Consensus       276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~~da  348 (376)
T KOG1188|consen  276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKVEDA  348 (376)
T ss_pred             CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEecCCc
Confidence            24445555544 5556655443      23344455555667789999987 8899999999999999997544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.9e-18  Score=165.08  Aligned_cols=202  Identities=22%  Similarity=0.321  Sum_probs=163.6

Q ss_pred             CCCCCeeEEecCCCeEEEEEcc--------CCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCC
Q 004581            2 GLPGGRLFSSSIDGSVSEWDLY--------DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSD   73 (744)
Q Consensus         2 ~~~~~~l~~~~~d~~i~iwd~~--------~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (744)
                      .+....|++++.||+|.+|+++        .-+++.+|.+|.++|-|+++.+++                          
T Consensus       303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~--------------------------  356 (577)
T KOG0642|consen  303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG--------------------------  356 (577)
T ss_pred             CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc--------------------------
Confidence            3456679999999999999993        246788999999999999999999                          


Q ss_pred             CCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecC-------CCceeEeecccCccCcEEEEEEecCCCEEE
Q 004581           74 DHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD-------SDELIYHRSLPRVSGRVLSVTWSADGNMLY  146 (744)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~-------~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~  146 (744)
                                              ..+.+|+.||+|+.|++..       .........+.||.+.|..+++|+....|+
T Consensus       357 ------------------------~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll  412 (577)
T KOG0642|consen  357 ------------------------EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL  412 (577)
T ss_pred             ------------------------eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence                                    6999999999999997651       122233467889999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceEEEEEec-----------------------------------------CCC---CCCCCcee
Q 004581          147 SGSSDGYIRSWDAKLGYEIYRITVG-----------------------------------------LGG---LGSGPELC  182 (744)
Q Consensus       147 t~~~dg~i~vwd~~~~~~~~~~~~~-----------------------------------------~~~---~~~~~~~~  182 (744)
                      +++.||+++.|+...... ..+...                                         ...   ........
T Consensus       413 scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~  491 (577)
T KOG0642|consen  413 SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ  491 (577)
T ss_pred             eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence            999999999999754433 111100                                         000   00011234


Q ss_pred             EEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          183 IWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       183 v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      +..+.+.|.+ ..+++..|+.|+++|..++.++.....|...++++++.|+|.+|++++.|+.+++|.+....
T Consensus       492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            5566777777 88999999999999999999999999999999999999999999999999999999987654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=1.8e-17  Score=148.27  Aligned_cols=214  Identities=18%  Similarity=0.256  Sum_probs=172.7

Q ss_pred             CCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc-
Q 004581          419 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV-  496 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~-  496 (744)
                      .+|+|.||++|+..+|++ ....+.||.....    .+|.. ...+..|...++.++|+|..++|++++.|..-+||.. 
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~----~~w~~-~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA----DLWEP-AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCC----CCcee-ceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            789999999999999997 6669999998752    22322 2667788889999999999999999999999999998 


Q ss_pred             cCCc--eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE---EecCCCCceeEEee
Q 004581          497 SSSE--LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF---ISRLEGASVTAAGF  571 (744)
Q Consensus       497 ~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~l~~  571 (744)
                      ..++  +...+..           ++...+++.|+|.++.+|+|+....|.||-++....-+.   +...+.+.|++++|
T Consensus        86 ~~~~WkptlvLlR-----------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW  154 (361)
T KOG1523|consen   86 SGGTWKPTLVLLR-----------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW  154 (361)
T ss_pred             CCCeeccceeEEE-----------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence            4443  3333343           789999999999999999999999999999987665432   33445578999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEc-----C-CCccccccccccC-CcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEE
Q 004581          572 PPQNNNVLIITTSSNQVYVFDV-----E-AKQLGEWSMQHTF-VLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCV  644 (744)
Q Consensus       572 sp~~~~~l~~~~~d~~v~vwd~-----~-~~~~~~ws~~~~~-~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~  644 (744)
                      +| ++-+|++|+.|+..+||..     + .-..++|..+.++ .+..++....+.+.++.|+|+|+ ..-|+...+.+++
T Consensus       155 hp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~  232 (361)
T KOG1523|consen  155 HP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSF  232 (361)
T ss_pred             cC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEE
Confidence            99 9999999999999999975     2 3346778888887 46666666679999999999964 4567788888999


Q ss_pred             EeCCCC
Q 004581          645 IDFGRP  650 (744)
Q Consensus       645 ~~~~~~  650 (744)
                      .|...|
T Consensus       233 ~da~~p  238 (361)
T KOG1523|consen  233 VDAAGP  238 (361)
T ss_pred             eecCCC
Confidence            997664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.8e-16  Score=134.20  Aligned_cols=190  Identities=18%  Similarity=0.217  Sum_probs=147.5

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccC---------C-ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYD---------L-KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSN   70 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~---------~-~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~   70 (744)
                      |+|++..|+.|..+|+|-+..+++         | ..+..+++|.++|..|+|..+                        
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~------------------------   73 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD------------------------   73 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh------------------------
Confidence            588999999999999999998864         2 344556899999999999942                        


Q ss_pred             CCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCc-eeE----eecccCcc-----CcEEEEEEec
Q 004581           71 DSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE-LIY----HRSLPRVS-----GRVLSVTWSA  140 (744)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~-~~~----~~~~~~h~-----~~V~~~~~s~  140 (744)
                                                  +|.+|++ |.|+=|......+ ...    ......|.     -.|+++...|
T Consensus        74 ----------------------------~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP  124 (325)
T KOG0649|consen   74 ----------------------------FLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP  124 (325)
T ss_pred             ----------------------------heeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Confidence                                        5666665 9999998863222 100    01122233     3589999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEE-ecCCeEEEEcCCCCEEEEeCCCcceEEEeec
Q 004581          141 DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLS-LRCGTLVSADSTGSVQFWDSRHGTLLQAHSF  219 (744)
Q Consensus       141 dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  219 (744)
                      ..+-+++++.|+.+..||+++|+..+.++        +|.+.|.++.- +.++.+++|++||++++||.+++++++.+..
T Consensus       125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  125 SENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             CCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            88888888899999999999999999998        89999999988 4555999999999999999999999887753


Q ss_pred             cc----------cceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          220 HK----------GDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       220 h~----------~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      ..          ..|-+++.+  ..++++|+ ...+.+|.++...
T Consensus       197 yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  197 YKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             ccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCC
Confidence            21          235556554  55788775 4569999998865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=1.1e-15  Score=153.67  Aligned_cols=145  Identities=14%  Similarity=0.151  Sum_probs=96.6

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe-CCCeEEEEEcc-CCceEEEEEecCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAK-LGYEIYRITVGLGGLG  176 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~  176 (744)
                      ..++...++.|.+|++.+...+.....+. +.+....++++|++++|++++ .++.|.+|++. +|+....-..      
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------   76 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------   76 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee------
Confidence            34445778999999997545554445554 345677899999999987765 47899999996 3432211111      


Q ss_pred             CCCceeEEEEEEecCC-eEEEEc-CCCCEEEEeCCC-cc---eEEEeeccccceeEEEEcCCCCEEEeec-CCCeEEEEE
Q 004581          177 SGPELCIWSLLSLRCG-TLVSAD-STGSVQFWDSRH-GT---LLQAHSFHKGDVNALAAAPSHNRVFSTG-SDGQVILYK  249 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~-~dg~i~vwd~~~-~~---~~~~~~~h~~~v~~l~~~~~~~~l~~~~-~dg~i~iw~  249 (744)
                       ........++|+|++ .+++++ .++.|.+|++++ +.   .+..+.+ .....+++++|+++++++++ .++.|.+||
T Consensus        77 -~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d  154 (330)
T PRK11028         77 -PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFT  154 (330)
T ss_pred             -cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence             122235679999999 555544 588999999874 32   2333322 33467788899988886554 468888888


Q ss_pred             ccc
Q 004581          250 ASC  252 (744)
Q Consensus       250 ~~~  252 (744)
                      +..
T Consensus       155 ~~~  157 (330)
T PRK11028        155 LSD  157 (330)
T ss_pred             ECC
Confidence            765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=4.2e-18  Score=163.96  Aligned_cols=266  Identities=16%  Similarity=0.228  Sum_probs=182.0

Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC--------cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH--------GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY  248 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw  248 (744)
                      .|...|..+.|.+-. .|++++.||.|++|+++.        -+++.++++|.++|.|+++.+++..+++||.||+|+.|
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            578889999999877 999999999999999932        35688999999999999999999999999999999999


Q ss_pred             EcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581          249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML  328 (744)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l  328 (744)
                      ++.... -+.+.      ...-.....+.||+..|..++++         +                        ....|
T Consensus       372 ~~p~n~-dp~ds------~dp~vl~~~l~Ghtdavw~l~~s---------~------------------------~~~~L  411 (577)
T KOG0642|consen  372 NLPPNQ-DPDDS------YDPSVLSGTLLGHTDAVWLLALS---------S------------------------TKDRL  411 (577)
T ss_pred             ccCCCC-Ccccc------cCcchhccceeccccceeeeeec---------c------------------------cccce
Confidence            887332 11110      01112356789999999999996         2                        22379


Q ss_pred             EEecCCCeEEEEecCccCC--CCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581          329 ISAGDDTKLFAYCANEFTK--FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS  406 (744)
Q Consensus       329 ~s~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~  406 (744)
                      ++++.||+++.|+......  +....        .......+.+......+...+                         
T Consensus       412 lscs~DgTvr~w~~~~~~~~~f~~~~--------e~g~Plsvd~~ss~~a~~~~s-------------------------  458 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESPCTFGEPK--------EHGYPLSVDRTSSRPAHSLAS-------------------------  458 (577)
T ss_pred             eeecCCceEEeeccCCcCccccCCcc--------ccCCcceEeeccchhHhhhhh-------------------------
Confidence            9999999999999876443  11100        000011111110000000000                         


Q ss_pred             cceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe
Q 004581          407 TSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG  486 (744)
Q Consensus       407 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~  486 (744)
                                                   ..-+...++++.. .....++.-....-+.....+..+...|.+.+.+++.
T Consensus       459 -----------------------------~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h  508 (577)
T KOG0642|consen  459 -----------------------------FRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH  508 (577)
T ss_pred             -----------------------------cccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCCeeEecc
Confidence                                         0000001111111 0011110000111122223677888899999999999


Q ss_pred             CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE
Q 004581          487 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF  557 (744)
Q Consensus       487 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~  557 (744)
                      .|+.|+++|..+++++.....           |...++++++.|+|-+|++++.|+.+++|.++...+...
T Consensus       509 ed~~Ir~~dn~~~~~l~s~~a-----------~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  509 EDRSIRFFDNKTGKILHSMVA-----------HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             cCCceecccccccccchheee-----------ccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence            999999999999999988887           899999999999999999999999999999987665433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=4.1e-17  Score=143.73  Aligned_cols=232  Identities=21%  Similarity=0.271  Sum_probs=172.8

Q ss_pred             CCCeEEEEEccCC--cee-EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccc
Q 004581           13 IDGSVSEWDLYDL--KQK-IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDEL   89 (744)
Q Consensus        13 ~d~~i~iwd~~~~--~~~-~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (744)
                      .|+.|.+.++...  ... ..|..|.+.||.++-+|..+.                                        
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~----------------------------------------   77 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR----------------------------------------   77 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc----------------------------------------
Confidence            4677777776643  222 246668899999999998753                                        


Q ss_pred             cccccccCCeEEEEecC-------CeEEEEEecCCCc------eeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEE
Q 004581           90 HEQSVVEDRRVALACDD-------GCVRIYRITDSDE------LIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIR  155 (744)
Q Consensus        90 ~~~~~~~~~~la~~~~d-------g~i~iwd~~~~~~------~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~  155 (744)
                               .|+++..+       -.+-||.+.....      +.....|. .+-+.|.|+.|.|++..|++-. |..|.
T Consensus        78 ---------ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~  147 (370)
T KOG1007|consen   78 ---------ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV  147 (370)
T ss_pred             ---------eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence                     44444331       2477999863221      22234444 4567999999999999999876 77999


Q ss_pred             EEEccCCce-EEEEEecCCCCCCCCceeEEEEEEec--CCeEEEEcCCCCEEEEeCCCcceEEEe-eccccceeEEEEcC
Q 004581          156 SWDAKLGYE-IYRITVGLGGLGSGPELCIWSLLSLR--CGTLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAP  231 (744)
Q Consensus       156 vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~  231 (744)
                      +|+++.+.. +..+....   ...+....++-+|+|  |+.-+....|++++.||+++..+...+ .+|...|..+.|+|
T Consensus       148 l~~l~ess~~vaev~ss~---s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp  224 (370)
T KOG1007|consen  148 LWSLDESSKIVAEVLSSE---SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP  224 (370)
T ss_pred             EEEcccCcchheeecccc---cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence            999988776 44443221   124667788889998  456666677999999999987776665 46888999999999


Q ss_pred             CCC-EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCC
Q 004581          232 SHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE  310 (744)
Q Consensus       232 ~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~  310 (744)
                      +-+ +|++|+.||.|++||.+....                ++..+.+|++.|.++.|.+                    
T Consensus       225 nkq~~lvt~gDdgyvriWD~R~tk~----------------pv~el~~HsHWvW~VRfn~--------------------  268 (370)
T KOG1007|consen  225 NKQHILVTCGDDGYVRIWDTRKTKF----------------PVQELPGHSHWVWAVRFNP--------------------  268 (370)
T ss_pred             CceEEEEEcCCCccEEEEeccCCCc----------------cccccCCCceEEEEEEecC--------------------
Confidence            865 577899999999999987663                4778899999999999972                    


Q ss_pred             CCccccccccccCCCcEEEEecCCCeEEEEecCcc
Q 004581          311 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF  345 (744)
Q Consensus       311 ~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~  345 (744)
                                  ...+++++++.|..|.+|.....
T Consensus       269 ------------~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  269 ------------EHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             ------------ccceEEEecCCCceeEEEecccc
Confidence                        23348999999999999987653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.2e-18  Score=161.63  Aligned_cols=316  Identities=18%  Similarity=0.207  Sum_probs=228.4

Q ss_pred             eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcC
Q 004581          123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADS  199 (744)
Q Consensus       123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~  199 (744)
                      ...|..|.+.|..|.|+..|..|++|+.|..|.+||+..+.....+..       +|...|....|.|..   .+++++.
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCCCcCceeccc
Confidence            467889999999999999999999999999999999999999888875       799999988898865   8999999


Q ss_pred             CCCEEEEeCCC-cce--EEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEee
Q 004581          200 TGSVQFWDSRH-GTL--LQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGS  275 (744)
Q Consensus       200 dg~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (744)
                      ||.+++=.+.. +.+  ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++......           .   ...
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-----------~---~~c  273 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-----------K---FVC  273 (559)
T ss_pred             cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-----------e---eee
Confidence            99999877653 332  24556799999999999976 568899999999999998765311           1   112


Q ss_pred             eeeccC---cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc
Q 004581          276 VRAHTH---DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE  352 (744)
Q Consensus       276 ~~~h~~---~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  352 (744)
                      ...+..   ...+++..         |                       .+...+++++.|..+++||.+.........
T Consensus       274 r~~~~~~~v~L~~Ia~~---------P-----------------------~nt~~faVgG~dqf~RvYD~R~~~~e~~n~  321 (559)
T KOG1334|consen  274 READEKERVGLYTIAVD---------P-----------------------RNTNEFAVGGSDQFARVYDQRRIDKEENNG  321 (559)
T ss_pred             eccCCccceeeeeEecC---------C-----------------------CCccccccCChhhhhhhhcccchhhccccc
Confidence            222222   23344443         1                       122389999999999999987644221110


Q ss_pred             cCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-C
Q 004581          353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-M  431 (744)
Q Consensus       353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~  431 (744)
                                 .+..  |                                      +...+.......|++++++.++ .
T Consensus       322 -----------~~~~--f--------------------------------------~p~hl~~d~~v~ITgl~Ysh~~sE  350 (559)
T KOG1334|consen  322 -----------VLDK--F--------------------------------------CPHHLVEDDPVNITGLVYSHDGSE  350 (559)
T ss_pred             -----------hhhh--c--------------------------------------CCccccccCcccceeEEecCCccc
Confidence                       0000  0                                      0011111334679999999666 5


Q ss_pred             EEEEEcCCceEEEEeecCCCCCce-E----EeeeccCCcccc--cccEEEE-eeCCCEEEEEeCCCcEEEEEccCCceee
Q 004581          432 LFAYSDHVKPSLFELKKGKVGQGE-W----IINKRQLPRKLQ--FAHSMIF-SYDSSQLIIAGHDRRIYVVDVSSSELLH  503 (744)
Q Consensus       432 ~la~~~~~~v~l~~~~~~~~~~~~-~----~~~~~~~~~~~~--~v~~i~~-spd~~~l~~~~~dg~i~v~d~~~~~~~~  503 (744)
                      +||+-.+-.|++|+-..+++.... .    ...+....+|..  .|..+.| -|...|+++|+.-|.|.||+-.++++++
T Consensus       351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence            566668888999966553331100 0    011122444543  4666655 6889999999999999999999999999


Q ss_pred             eeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581          504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR  553 (744)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~  553 (744)
                      -+.+           -..-|+||.-+|--..||+.+.|..|+||--.+.+
T Consensus       431 ~Meg-----------Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  431 FMEG-----------DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             Hhhc-----------ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            9888           45589999999999999999999999999875443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.8e-18  Score=179.21  Aligned_cols=194  Identities=21%  Similarity=0.290  Sum_probs=156.2

Q ss_pred             eEEEEecCCeEEEEEecC---CCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCC
Q 004581           99 RVALACDDGCVRIYRITD---SDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGG  174 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~  174 (744)
                      .||.|++||.|.+||...   +.....+.++..|.+.|..+.|++... +||+|+.||.|.|||+..-+......     
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----  156 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----  156 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----
Confidence            799999999999999874   555555688889999999999999776 99999999999999998755444332     


Q ss_pred             CCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEEEeecccc--ceeEEEEcCCC-CEEEeecCC---CeEE
Q 004581          175 LGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHSFHKG--DVNALAAAPSH-NRVFSTGSD---GQVI  246 (744)
Q Consensus       175 ~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~-~~l~~~~~d---g~i~  246 (744)
                       .......|.+++|+..-  .|++++.+|.+.|||++..+.+-.+..|.+  .+..++|+|++ ..|++++.|   -.|.
T Consensus       157 -~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq  235 (1049)
T KOG0307|consen  157 -SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ  235 (1049)
T ss_pred             -CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence             11366789999999766  689999999999999998888877766554  47789999987 456666654   4699


Q ss_pred             EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581          247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP  326 (744)
Q Consensus       247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  326 (744)
                      +||++....                .++.+++|...|.++.|+                                ..+..
T Consensus       236 lWDlR~ass----------------P~k~~~~H~~GilslsWc--------------------------------~~D~~  267 (1049)
T KOG0307|consen  236 LWDLRFASS----------------PLKILEGHQRGILSLSWC--------------------------------PQDPR  267 (1049)
T ss_pred             eecccccCC----------------chhhhcccccceeeeccC--------------------------------CCCch
Confidence            999887542                356778999999999987                                22334


Q ss_pred             EEEEecCCCeEEEEecCccC
Q 004581          327 MLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~  346 (744)
                      +|++++.|+.|.+|+.++.+
T Consensus       268 lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  268 LLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             hhhcccCCCCeeEecCCCce
Confidence            99999999999999998744

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=2.8e-17  Score=151.04  Aligned_cols=166  Identities=22%  Similarity=0.297  Sum_probs=140.7

Q ss_pred             EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeE
Q 004581           30 VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCV  109 (744)
Q Consensus        30 ~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i  109 (744)
                      .+.||.++|-.++|+|-..                                                 ..||+|++|.+|
T Consensus        76 ~v~GHt~~vLDi~w~PfnD-------------------------------------------------~vIASgSeD~~v  106 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFND-------------------------------------------------CVIASGSEDTKV  106 (472)
T ss_pred             CccCccccccccccCccCC-------------------------------------------------ceeecCCCCceE
Confidence            4678999999999999774                                                 589999999999


Q ss_pred             EEEEecCCCc----eeEeecccCccCcEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEE
Q 004581          110 RIYRITDSDE----LIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW  184 (744)
Q Consensus       110 ~iwd~~~~~~----~~~~~~~~~h~~~V~~~~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (744)
                      .||.+..+..    ..+...|.+|..+|-.++|+|.. +.|++++.|.+|.+||+.+|+.+..+.         |...|+
T Consensus       107 ~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~---------hpd~i~  177 (472)
T KOG0303|consen  107 MVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD---------HPDMVY  177 (472)
T ss_pred             EEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC---------CCCeEE
Confidence            9999974432    23347888999999999999964 578999999999999999999988874         999999


Q ss_pred             EEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccc-eeEEEEcCCCCEEEeec----CCCeEEEEEcccCc
Q 004581          185 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGD-VNALAAAPSHNRVFSTG----SDGQVILYKASCES  254 (744)
Q Consensus       185 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~~~~----~dg~i~iw~~~~~~  254 (744)
                      ++.|+.|| +|++.+.|..|+|||.++++.+..-.+|.+. -..+.|..+|. +++.|    .+..+.+||...-.
T Consensus       178 S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLE  252 (472)
T ss_pred             EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCccccc
Confidence            99999999 9999999999999999999999888788653 45567888888 55443    37889999987644

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=3.6e-18  Score=171.39  Aligned_cols=279  Identities=16%  Similarity=0.236  Sum_probs=209.5

Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      +|...|+|+.|...| ++++|+.|..++||..+++.++.++.+|.+.|+.++.+.++.++++++.|..|++|.+..+.  
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--  265 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--  265 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--
Confidence            799999999999999 89999999999999999999999999999999999999999999999999999999999887  


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                     ++..+++|++.|++++|+                                     -..+.+.||+
T Consensus       266 ---------------pvsvLrghtgavtaiafs-------------------------------------P~~sss~dgt  293 (1113)
T KOG0644|consen  266 ---------------PVSVLRGHTGAVTAIAFS-------------------------------------PRASSSDDGT  293 (1113)
T ss_pred             ---------------hHHHHhccccceeeeccC-------------------------------------ccccCCCCCc
Confidence                           377889999999999997                                     2447788999


Q ss_pred             EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK  416 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (744)
                      +++||.+-    ......+.|...            +                                           
T Consensus       294 ~~~wd~r~----~~~~y~prp~~~------------~-------------------------------------------  314 (1113)
T KOG0644|consen  294 CRIWDARL----EPRIYVPRPLKF------------T-------------------------------------------  314 (1113)
T ss_pred             eEeccccc----cccccCCCCCCc------------c-------------------------------------------
Confidence            99999981    111111111100            0                                           


Q ss_pred             CCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEEE
Q 004581          417 ASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYVV  494 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v~  494 (744)
                      ....+.++.|-.++.-++++ .++..+.|.+..     ..|         +...+.-+.++.|. .+.+++-.+-.+.+|
T Consensus       315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-----l~~---------~~~~lif~t~ssd~~~~~~~ar~~~~~~vw  380 (1113)
T KOG0644|consen  315 EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ-----LAW---------RSNLLIFVTRSSDLSSIVVTARNDHRLCVW  380 (1113)
T ss_pred             cccceeeeeccccccccccccCCcccccchhhH-----hhh---------hccceEEEeccccccccceeeeeeeEeeee
Confidence            01223334444555555553 555555554432     111         00011112222222 456667778889999


Q ss_pred             EccCCceeeeeccCcccccccCCCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581          495 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       495 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      ++.+|++.+.+.+           |...+..+.++|-.. ...+++.||...|||+-.+.+.......| ..+...+||+
T Consensus       381 nl~~g~l~H~l~g-----------hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSq  448 (1113)
T KOG0644|consen  381 NLYTGQLLHNLMG-----------HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQ  448 (1113)
T ss_pred             ecccchhhhhhcc-----------cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCC
Confidence            9999999999998           899999999999555 44578899999999998887766555545 4677779999


Q ss_pred             CCCCeEEEEecCCeEEEEEcCCC
Q 004581          574 QNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       574 ~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                       ||..++....-|.++|.....+
T Consensus       449 -dgts~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  449 -DGTSIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             -CCceEecCCCCCceEEeccCCC
Confidence             9999998888889999876544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.76  E-value=5.8e-15  Score=153.17  Aligned_cols=191  Identities=16%  Similarity=0.184  Sum_probs=157.7

Q ss_pred             CCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcce-eE---EeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            2 GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSI-WQ---MAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         2 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i-~~---v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      +..+.+++.++.++.+.+||...+.....+.+..... .+   +.++++.                              
T Consensus        96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~------------------------------  145 (967)
T KOG0974|consen   96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE------------------------------  145 (967)
T ss_pred             hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE------------------------------
Confidence            4567789999999999999999888777666433221 12   2233333                              


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW  157 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw  157 (744)
                                          -++++|+.-+.|.+|+.......   ..+.+|++.|.++.|+-||.++++.|.|.++|+|
T Consensus       146 --------------------~~i~~gsv~~~iivW~~~~dn~p---~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW  202 (967)
T KOG0974|consen  146 --------------------LYIASGSVFGEIIVWKPHEDNKP---IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLW  202 (967)
T ss_pred             --------------------EEEEeccccccEEEEeccccCCc---ceecccCCceEEEEEccCCcEEEEEecCcceeee
Confidence                                38999999999999999733332   3688999999999999999999999999999999


Q ss_pred             EccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeecccc-ceeEEEEcCCCCEE
Q 004581          158 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG-DVNALAAAPSHNRV  236 (744)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l  236 (744)
                      ++++++.....-       -+|...||.+.|.|+ ++++++.|-+.++|+.+ ++.+..+.+|.. .|..++..++...+
T Consensus       203 ~i~s~~~~~~~~-------fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~  273 (967)
T KOG0974|consen  203 PIDSREVLGCTG-------FGHSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK  273 (967)
T ss_pred             ecccccccCccc-------ccccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence            999988776211       279999999999999 99999999999999776 777778888864 68999999999999


Q ss_pred             EeecCCCeEEEEEcccCc
Q 004581          237 FSTGSDGQVILYKASCES  254 (744)
Q Consensus       237 ~~~~~dg~i~iw~~~~~~  254 (744)
                      ++++.|+.+++|++....
T Consensus       274 vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  274 VTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EeeccCcchhhhhhhccc
Confidence            999999999999988754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1.9e-18  Score=173.24  Aligned_cols=285  Identities=15%  Similarity=0.181  Sum_probs=204.2

Q ss_pred             eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC
Q 004581          123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG  201 (744)
Q Consensus       123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg  201 (744)
                      .+.+.+|...|.|+.|...|.++++|+.|..++||..+++.++..+.        +|.+.|+.++.+.++ .+++++.|.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r--------Ghs~ditdlavs~~n~~iaaaS~D~  254 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR--------GHSGDITDLAVSSNNTMIAAASNDK  254 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC--------CCccccchhccchhhhhhhhcccCc
Confidence            36778999999999999999999999999999999999999999998        899999999999988 889999999


Q ss_pred             CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeecc-
Q 004581          202 SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT-  280 (744)
Q Consensus       202 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-  280 (744)
                      .|++|-+.++.++..+.+|++.|++++|+|-.    +.+.||++++||.+-....      ..        ...+.... 
T Consensus       255 vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~------y~--------prp~~~~~~  316 (1113)
T KOG0644|consen  255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI------YV--------PRPLKFTEK  316 (1113)
T ss_pred             eEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc------cC--------CCCCCcccc
Confidence            99999999999999999999999999999954    6788999999998822100      00        00000111 


Q ss_pred             CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCC
Q 004581          281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV  360 (744)
Q Consensus       281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  360 (744)
                      ..+.++.+.                                 ..+..+++++.|+.-..|.+..                
T Consensus       317 ~~~~s~~~~---------------------------------~~~~~f~Tgs~d~ea~n~e~~~----------------  347 (1113)
T KOG0644|consen  317 DLVDSILFE---------------------------------NNGDRFLTGSRDGEARNHEFEQ----------------  347 (1113)
T ss_pred             cceeeeecc---------------------------------ccccccccccCCcccccchhhH----------------
Confidence            112222221                                 1223677888887766665532                


Q ss_pred             ccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEEE-cC
Q 004581          361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAYS-DH  438 (744)
Q Consensus       361 ~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~la~~-~~  438 (744)
                             +++......+++...                                              +- .+.+++ .+
T Consensus       348 -------l~~~~~~lif~t~ss----------------------------------------------d~~~~~~~ar~~  374 (1113)
T KOG0644|consen  348 -------LAWRSNLLIFVTRSS----------------------------------------------DLSSIVVTARND  374 (1113)
T ss_pred             -------hhhhccceEEEeccc----------------------------------------------cccccceeeeee
Confidence                   111111112221111                                              11 122222 34


Q ss_pred             CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE-EEEeCCCcEEEEEccCCceeeeeccCcccccccCC
Q 004581          439 VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL-IIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ  517 (744)
Q Consensus       439 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~  517 (744)
                      -.+.+|++..   +..+     ..+.+|...+..+.++|-+.++ .+++.||...|||+-.|.+++.+..          
T Consensus       375 ~~~~vwnl~~---g~l~-----H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~----------  436 (1113)
T KOG0644|consen  375 HRLCVWNLYT---GQLL-----HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI----------  436 (1113)
T ss_pred             eEeeeeeccc---chhh-----hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec----------
Confidence            4445566543   2111     4456777789999999966655 5678899999999988887766553          


Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581          518 PSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ  554 (744)
Q Consensus       518 ~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~  554 (744)
                       ....+..-+||+||..++..+.-|.++|.....++.
T Consensus       437 -gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  437 -GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             -ccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence             355677779999999999999999999988765544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=8.3e-17  Score=148.01  Aligned_cols=188  Identities=19%  Similarity=0.261  Sum_probs=151.7

Q ss_pred             CCeeEEecCCCeEEEEEccCC-------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDL-------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      +..+|+|+.|.+|.||.+..+       +++..|.+|...|.-|+|+|...                             
T Consensus        94 D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-----------------------------  144 (472)
T KOG0303|consen   94 DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-----------------------------  144 (472)
T ss_pred             CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-----------------------------
Confidence            556999999999999998753       45678999999999999999874                             


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW  157 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw  157 (744)
                                          +.|++++.|++|.|||+.+++.+   .++. |..-|.++.|+.||.+|+|.+.|..||||
T Consensus       145 --------------------NVLlsag~Dn~v~iWnv~tgeal---i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~  200 (472)
T KOG0303|consen  145 --------------------NVLLSAGSDNTVSIWNVGTGEAL---ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI  200 (472)
T ss_pred             --------------------hhHhhccCCceEEEEeccCCcee---eecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence                                57999999999999999999887   4555 99999999999999999999999999999


Q ss_pred             EccCCceEEEEEecCCCCCCCCc-eeEEEEEEecCCeEEEEc----CCCCEEEEeCCC---cceEEEeeccccceeEEEE
Q 004581          158 DAKLGYEIYRITVGLGGLGSGPE-LCIWSLLSLRCGTLVSAD----STGSVQFWDSRH---GTLLQAHSFHKGDVNALAA  229 (744)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~~----~dg~i~vwd~~~---~~~~~~~~~h~~~v~~l~~  229 (744)
                      |.++|+.+..-.        .|. ..-..+.|..++.+++.+    ++..+-+||...   .-..+.+.. .+.|.---|
T Consensus       201 dpr~~~~v~e~~--------~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFy  271 (472)
T KOG0303|consen  201 DPRRGTVVSEGV--------AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFY  271 (472)
T ss_pred             cCCCCcEeeecc--------cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeee
Confidence            999999988774        232 233445677788666554    467899998765   323455554 456666678


Q ss_pred             cCCCCEEEeec-CCCeEEEEEcccCc
Q 004581          230 APSHNRVFSTG-SDGQVILYKASCES  254 (744)
Q Consensus       230 ~~~~~~l~~~~-~dg~i~iw~~~~~~  254 (744)
                      .+|.+.++.+| .|+.|+-|.+....
T Consensus       272 D~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  272 DPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCCCCEEEEEecCCcceEEEEecCCC
Confidence            88888887655 49999999988765

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2.9e-16  Score=162.00  Aligned_cols=303  Identities=14%  Similarity=0.160  Sum_probs=195.5

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeC
Q 004581          132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDS  208 (744)
Q Consensus       132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~  208 (744)
                      +-..+.|+|-...++++...-.|+|||.+.++....+..+.     .....|..+.+..+.   .+++++.||.|+||+-
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            45668899988999999877799999999999988887432     345678888887644   7899999999999964


Q ss_pred             CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeee
Q 004581          209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV  288 (744)
Q Consensus       209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  288 (744)
                      -....     ....-|  -+|++=...+.++..-|.+.-|.-.+                                    
T Consensus      1141 y~~~~-----~~~eLV--Taw~~Ls~~~~~~r~~~~v~dWqQ~~------------------------------------ 1177 (1387)
T KOG1517|consen 1141 YADKW-----KKPELV--TAWSSLSDQLPGARGTGLVVDWQQQS------------------------------------ 1177 (1387)
T ss_pred             ccccc-----CCceeE--EeeccccccCccCCCCCeeeehhhhC------------------------------------
Confidence            31110     000001  12222112222222223233332111                                    


Q ss_pred             eccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccce
Q 004581          289 AVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNT  368 (744)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  368 (744)
                                                           ..|+++|.-..|++||........                   
T Consensus      1178 -------------------------------------G~Ll~tGd~r~IRIWDa~~E~~~~------------------- 1201 (1387)
T KOG1517|consen 1178 -------------------------------------GHLLVTGDVRSIRIWDAHKEQVVA------------------- 1201 (1387)
T ss_pred             -------------------------------------CeEEecCCeeEEEEEecccceeEe-------------------
Confidence                                                 145555557788899887533211                   


Q ss_pred             eecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEc-CCCCEEEEE-cCCceEEEEe
Q 004581          369 IFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTIS-NSGMLFAYS-DHVKPSLFEL  446 (744)
Q Consensus       369 ~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~la~~-~~~~v~l~~~  446 (744)
                                                                 .+..+....++++.-+ ..|..+++| .||.+++||.
T Consensus      1202 -------------------------------------------diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~ 1238 (1387)
T KOG1517|consen 1202 -------------------------------------------DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDR 1238 (1387)
T ss_pred             -------------------------------------------ecccCCCccceeecccccCCceEEEeecCCceEEeec
Confidence                                                       1111112333433322 246788887 9999999999


Q ss_pred             ecCCC--CCceEEeeeccCCcccc--cccEEEEeeCCCE-EEEEeCCCcEEEEEccCCceeeee--ccCcccccccCCCC
Q 004581          447 KKGKV--GQGEWIINKRQLPRKLQ--FAHSMIFSYDSSQ-LIIAGHDRRIYVVDVSSSELLHTF--TPCREEHDREIQPS  519 (744)
Q Consensus       447 ~~~~~--~~~~~~~~~~~~~~~~~--~v~~i~~spd~~~-l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~  519 (744)
                      +....  .+..|       ..|..  +|..+.+-+.|-. |++|+.+|.|++||+........+  ..+.+        .
T Consensus      1239 R~a~~ds~v~~~-------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~--------y 1303 (1387)
T KOG1517|consen 1239 RMAPPDSLVCVY-------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE--------Y 1303 (1387)
T ss_pred             ccCCccccceee-------cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc--------c
Confidence            86333  22222       22332  4888999886655 999999999999999753222222  22111        2


Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEE-----ecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI-----SRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~  594 (744)
                      .+..+++..+++...+|+|+. +.|.||++...+.-...     .+...+.+.+++|+| -.-+||+|+.|..|.||..+
T Consensus      1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             CccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecC
Confidence            346999999999999999998 99999999866532221     111226789999999 87889999999999999988


Q ss_pred             CCcc
Q 004581          595 AKQL  598 (744)
Q Consensus       595 ~~~~  598 (744)
                      ..++
T Consensus      1382 k~~~ 1385 (1387)
T KOG1517|consen 1382 KPRL 1385 (1387)
T ss_pred             CcCC
Confidence            7753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.8e-16  Score=145.48  Aligned_cols=310  Identities=13%  Similarity=0.071  Sum_probs=202.0

Q ss_pred             eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC
Q 004581          123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG  201 (744)
Q Consensus       123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg  201 (744)
                      .+.+.+|.+.|.++.||.++++||+|+.|..+++|+++..- ..+...+.+-....|...|.|++|...+ .+++|..++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~-~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM-VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHH-hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            36677999999999999999999999999999999985421 1111112222223677999999999877 899999999


Q ss_pred             CEEEEeCCCcceEEEeec--cccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeec
Q 004581          202 SVQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH  279 (744)
Q Consensus       202 ~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  279 (744)
                      +|..-|+++.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+.......              ...+...
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--------------~~~~AN~  193 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--------------LVLPANS  193 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--------------eeeecCC
Confidence            999999999888876653  345899999999999999999999999999987542100              0111111


Q ss_pred             cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCC
Q 004581          280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQR  359 (744)
Q Consensus       280 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  359 (744)
                      .....++.|.                                +....+|++.+..+-+-+||.+................
T Consensus       194 ~~~F~t~~F~--------------------------------P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~  241 (609)
T KOG4227|consen  194 GKNFYTAEFH--------------------------------PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP  241 (609)
T ss_pred             Cccceeeeec--------------------------------CCCceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence            2222333343                                12224788888889999999986432211110000000


Q ss_pred             CccccccceeecCCeEEEEEeC-C-eEEEEEeeccCCcccCCCCCCCCCcceEEEEEecC-------CCCeEEEEEcCCC
Q 004581          360 VPIHLVHNTIFSHTSLLLVQYS-C-RLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA-------SRKIICSTISNSG  430 (744)
Q Consensus       360 ~~~~~v~~~~~s~~~~~l~~~~-~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~g  430 (744)
                      .....-.++.|+|+|..+.+-. + .-.+|++-...                +..++..|       ...+.+++|..|-
T Consensus       242 ~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R----------------~~V~k~D~N~~GY~N~~T~KS~~F~~D~  305 (609)
T KOG4227|consen  242 QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR----------------CFVLKSDHNPNGYCNIKTIKSMTFIDDY  305 (609)
T ss_pred             ccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc----------------ceeEeccCCCCcceeeeeeeeeeeecce
Confidence            0011224678889887655432 2 33344444322                11122221       1235567777665


Q ss_pred             CEEEE-EcCCceEEEEeecCCCCCc---------------eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581          431 MLFAY-SDHVKPSLFELKKGKVGQG---------------EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV  494 (744)
Q Consensus       431 ~~la~-~~~~~v~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~  494 (744)
                      . +++ +.+-.+++|.+.......-               +.+-.-..+.+|..-++.+.|+|....|++.+-...++||
T Consensus       306 ~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW  384 (609)
T KOG4227|consen  306 T-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW  384 (609)
T ss_pred             e-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence            5 566 4777899999864211100               1111113466788889999999999999999999999999


Q ss_pred             Ec
Q 004581          495 DV  496 (744)
Q Consensus       495 d~  496 (744)
                      .-
T Consensus       385 S~  386 (609)
T KOG4227|consen  385 SD  386 (609)
T ss_pred             cc
Confidence            75

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.4e-15  Score=139.92  Aligned_cols=289  Identities=13%  Similarity=0.175  Sum_probs=201.3

Q ss_pred             CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE----cCCceEEEEeecCCCCCceE
Q 004581          381 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS----DHVKPSLFELKKGKVGQGEW  456 (744)
Q Consensus       381 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~----~~~~v~l~~~~~~~~~~~~~  456 (744)
                      +..|.+|++....+..             -..........++-++++|+++.|.++    ..+.+-.|.++..++...+ 
T Consensus        15 s~gI~v~~ld~~~g~l-------------~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-   80 (346)
T COG2706          15 SQGIYVFNLDTKTGEL-------------SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-   80 (346)
T ss_pred             CCceEEEEEeCccccc-------------chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-
Confidence            3578889998666441             111112334778889999999887773    4788999999874455444 


Q ss_pred             EeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEccC-Cceeee---eccCc-ccccccCCCCCCceEEEEECC
Q 004581          457 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS-SELLHT---FTPCR-EEHDREIQPSEPPITKMFTSS  530 (744)
Q Consensus       457 ~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~i~~l~~sp  530 (744)
                       +....+.+.  +.+.++++++|++|+++.. .|.|.++.++. |.+...   +.... ...+++..+|   +....+.|
T Consensus        81 -ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h---~H~a~~tP  154 (346)
T COG2706          81 -LNRQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPH---VHSANFTP  154 (346)
T ss_pred             -eeccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCc---cceeeeCC
Confidence             333334433  4589999999999999977 58999999954 543322   22100 0011222222   77889999


Q ss_pred             CCCEEEEEeC-CCcEEEEECCCcceEEEE--ecCCCCceeEEeecCCCCCeEEEEec-CCeEEEEEcCC--Ccccccccc
Q 004581          531 DGQWLAAVNC-FGDVYIFNLEIQRQHWFI--SRLEGASVTAAGFPPQNNNVLIITTS-SNQVYVFDVEA--KQLGEWSMQ  604 (744)
Q Consensus       531 dg~~las~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~l~~~~~-d~~v~vwd~~~--~~~~~ws~~  604 (744)
                      ++++|++.+. -..|.+|+++.+.+...-  ....+..+++|+|+| ++++..+.++ +++|.+|..+.  +++..  .+
T Consensus       155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~--lQ  231 (346)
T COG2706         155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEE--LQ  231 (346)
T ss_pred             CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEE--ee
Confidence            9999999874 346999999977653221  112457899999999 9999888776 67999999987  66544  45


Q ss_pred             ccCCcccccccCCCceEEEEeCCCCCCcEEEEE----cCceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCcccccc
Q 004581          605 HTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY----SARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLK  680 (744)
Q Consensus       605 ~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (744)
                      ....+|..|.+. .+..+|..+|||+  -+++.    ++.+++.+|...               ..|+.++..++.+..|
T Consensus       232 ~i~tlP~dF~g~-~~~aaIhis~dGr--FLYasNRg~dsI~~f~V~~~~---------------g~L~~~~~~~teg~~P  293 (346)
T COG2706         232 TIDTLPEDFTGT-NWAAAIHISPDGR--FLYASNRGHDSIAVFSVDPDG---------------GKLELVGITPTEGQFP  293 (346)
T ss_pred             eeccCccccCCC-CceeEEEECCCCC--EEEEecCCCCeEEEEEEcCCC---------------CEEEEEEEeccCCcCC
Confidence            556788888754 6788999999975  33332    334556666421               1155666777888888


Q ss_pred             ccccccccccccccCCcceEEEecccceEEeeecCCCeEEEEecChH
Q 004581          681 RKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPWL  727 (744)
Q Consensus       681 r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~vve~p~~  727 (744)
                      |                .|. +.+.+.+|.++.+++|.+.|++|-..
T Consensus       294 R----------------~F~-i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         294 R----------------DFN-INPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             c----------------cce-eCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            8                788 89999999999999999999999774

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=1.1e-15  Score=146.16  Aligned_cols=174  Identities=15%  Similarity=0.173  Sum_probs=145.8

Q ss_pred             CeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSD   85 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (744)
                      +.++.++.||.+.+.+ +.++..+.+..|.+.|.|-.|+|||                                      
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--------------------------------------  116 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG--------------------------------------  116 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC--------------------------------------
Confidence            3488889999999998 6788999999999999999999999                                      


Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                                  .-|+++++||.|++|.-.  +.+.  .++.....+|.|++|.|+.+.++.+.. +.+.|=.+.-...+
T Consensus       117 ------------tgLlt~GEDG~iKiWSrs--GMLR--Stl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~  179 (737)
T KOG1524|consen  117 ------------AGLLTAGEDGVIKIWSRS--GMLR--STVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKI  179 (737)
T ss_pred             ------------ceeeeecCCceEEEEecc--chHH--HHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccce
Confidence                        578999999999999974  3332  556667789999999999987776654 47777777777777


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ  244 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~  244 (744)
                      -+.+        .|.+.|.++.|++.+ .+++|++|-..++||.. |+.+..-..|..+|++++|+|+ ..++.++. ++
T Consensus       180 i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt  248 (737)
T KOG1524|consen  180 IRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT  248 (737)
T ss_pred             eEEe--------ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence            7777        799999999999988 89999999999999987 8888888899999999999999 55555543 34


Q ss_pred             EE
Q 004581          245 VI  246 (744)
Q Consensus       245 i~  246 (744)
                      ++
T Consensus       249 ~R  250 (737)
T KOG1524|consen  249 AR  250 (737)
T ss_pred             ee
Confidence            44

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.5e-14  Score=145.39  Aligned_cols=187  Identities=15%  Similarity=0.182  Sum_probs=126.7

Q ss_pred             eEEecCCCeEEEEEccC-Cc--eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            8 LFSSSIDGSVSEWDLYD-LK--QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~-~~--~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      +++...++.|.+||+.+ ++  .+.++. +.+....++++|+++                                    
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~------------------------------------   47 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR------------------------------------   47 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC------------------------------------
Confidence            34447799999999964 43  445554 356788899999994                                    


Q ss_pred             CcccccccccccCCeEEEE-ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCeEEEEEccC-
Q 004581           85 DSDELHEQSVVEDRRVALA-CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKL-  161 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~-  161 (744)
                                    +|+++ ..++.|.+|++.....+....... ..+....++|+|+|++|++++. ++.|.+|++++ 
T Consensus        48 --------------~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         48 --------------HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             --------------EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence                          55544 458899999997333343223222 2335678999999999988875 78999999964 


Q ss_pred             CceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEcCCCCEEEEeCCCcceEEE-----eec-cccceeEEEEcCCC
Q 004581          162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQA-----HSF-HKGDVNALAAAPSH  233 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~-----~~~-h~~~v~~l~~~~~~  233 (744)
                      +.........      ........++++|++ ++ ++...++.|.+||+.+...+..     ... .......++|+|+|
T Consensus       113 g~~~~~~~~~------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg  186 (330)
T PRK11028        113 GIPVAPIQII------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ  186 (330)
T ss_pred             CCCCCceeec------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC
Confidence            3221111100      122345667899998 54 5566679999999976332211     111 12345789999999


Q ss_pred             CEEEeecC-CCeEEEEEccc
Q 004581          234 NRVFSTGS-DGQVILYKASC  252 (744)
Q Consensus       234 ~~l~~~~~-dg~i~iw~~~~  252 (744)
                      ++++++.. ++.|.+|++..
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeC
Confidence            99988876 89999999974

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.6e-15  Score=141.57  Aligned_cols=202  Identities=17%  Similarity=0.177  Sum_probs=148.0

Q ss_pred             eEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccc
Q 004581          225 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK  304 (744)
Q Consensus       225 ~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~  304 (744)
                      .+++|+.+|..+++++.||.+|+|+......                 +.....|...|.++.|+         ||++  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----------------~l~e~~~~~eV~DL~FS---------~dgk--  199 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----------------ILEEIAHHAEVKDLDFS---------PDGK--  199 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh-----------------hhhhHhhcCccccceeC---------CCCc--
Confidence            6899999999999999999999999776552                 44557899999999998         8887  


Q ss_pred             ccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeE
Q 004581          305 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRL  384 (744)
Q Consensus       305 ~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i  384 (744)
                                            .|++-+.| ..++|+..+.........                               
T Consensus       200 ----------------------~lasig~d-~~~VW~~~~g~~~a~~t~-------------------------------  225 (398)
T KOG0771|consen  200 ----------------------FLASIGAD-SARVWSVNTGAALARKTP-------------------------------  225 (398)
T ss_pred             ----------------------EEEEecCC-ceEEEEeccCchhhhcCC-------------------------------
Confidence                                  99999999 999999987532211110                               


Q ss_pred             EEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC---C-EEEE--EcCCceEEEEeecCCCCCceEEe
Q 004581          385 DILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG---M-LFAY--SDHVKPSLFELKKGKVGQGEWII  458 (744)
Q Consensus       385 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~-~la~--~~~~~v~l~~~~~~~~~~~~~~~  458 (744)
                                                    .........+.|+.|+   . ++++  ...+.++.|++...... .+  +
T Consensus       226 ------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~--l  272 (398)
T KOG0771|consen  226 ------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NF--L  272 (398)
T ss_pred             ------------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cc--c
Confidence                                          0011223333444444   1 2233  24556666666542222 21  1


Q ss_pred             eeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE
Q 004581          459 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV  538 (744)
Q Consensus       459 ~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~  538 (744)
                      +..+.......+++++.|+||+++|.|+.||.|.|++..+.+.++.++..          |...|+.+.|+||.+++++.
T Consensus       273 ~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a----------H~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  273 RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA----------HLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh----------heeeeeeEEEcCCcCccccc
Confidence            22233334458999999999999999999999999999988888777653          99999999999999999999


Q ss_pred             eCCCcEEEEECCC
Q 004581          539 NCFGDVYIFNLEI  551 (744)
Q Consensus       539 ~~dg~i~iwd~~~  551 (744)
                      +.+....|..+.-
T Consensus       343 Ss~~~~~v~~l~v  355 (398)
T KOG0771|consen  343 SSDNEAAVTKLAV  355 (398)
T ss_pred             ccCCceeEEEEee
Confidence            9999888887754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=2.3e-15  Score=133.02  Aligned_cols=278  Identities=17%  Similarity=0.243  Sum_probs=188.0

Q ss_pred             CCeeEEecC----CCeEEEEEc--cCCceeEEe-eccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            5 GGRLFSSSI----DGSVSEWDL--YDLKQKIVL-QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         5 ~~~l~~~~~----d~~i~iwd~--~~~~~~~~~-~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      +.|||.|+.    .+.|.|-.+  .+++.+..- -.|..+++.+.|.|+.+-...                         
T Consensus        59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p-------------------------  113 (364)
T KOG0290|consen   59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP-------------------------  113 (364)
T ss_pred             ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc-------------------------
Confidence            456888863    456665544  344444321 138899999999998842211                         


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCC-ceeEeecc-----cCccCcEEEEEEec-CCCEEEEEeC
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD-ELIYHRSL-----PRVSGRVLSVTWSA-DGNMLYSGSS  150 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~V~~~~~s~-dg~~l~t~~~  150 (744)
                                          ++||+.++  .+|+|.+...+ .+.....+     ..+..++++..|+. |-+++.+++-
T Consensus       114 --------------------dlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen  114 --------------------DLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             --------------------chhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence                                36776654  89999997322 22222222     24567899999986 5568889999


Q ss_pred             CCeEEEEEccCCce---EEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceE---EEeecccc
Q 004581          151 DGYIRSWDAKLGYE---IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL---QAHSFHKG  222 (744)
Q Consensus       151 dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~---~~~~~h~~  222 (744)
                      |-+..|||+++|..   ...+-        .|...|+.++|..++  .+++.+.||.+|++|++.-+.-   ..-.....
T Consensus       172 DTTCTiWdie~~~~~~vkTQLI--------AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~  243 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLI--------AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST  243 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEE--------ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence            99999999999733   23333        699999999999977  7999999999999999874433   22223346


Q ss_pred             ceeEEEEcCCC-CEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCc
Q 004581          223 DVNALAAAPSH-NRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPE  300 (744)
Q Consensus       223 ~v~~l~~~~~~-~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~  300 (744)
                      +...++|++.. +++++-.. ...|.+.|++....                .+..+++|...|.+++|.         |.
T Consensus       244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t----------------pva~L~~H~a~VNgIaWa---------Ph  298 (364)
T KOG0290|consen  244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT----------------PVARLRNHQASVNGIAWA---------PH  298 (364)
T ss_pred             cceeeccCcCCchHHhhhhcCCceEEEEEecCCCc----------------ceehhhcCcccccceEec---------CC
Confidence            78899998854 66666444 45799999987653                477889999999999997         33


Q ss_pred             ccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCC-eEEEEE
Q 004581          301 DKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT-SLLLVQ  379 (744)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~  379 (744)
                      .                       ...|.++|.|....+||+..........  +...-.....|+.+.|++. ...++.
T Consensus       299 S-----------------------~~hictaGDD~qaliWDl~q~~~~~~~d--Pilay~a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  299 S-----------------------SSHICTAGDDCQALIWDLQQMPRENGED--PILAYTAGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             C-----------------------CceeeecCCcceEEEEecccccccCCCC--chhhhhccceeeeeeecccCCCEEEE
Confidence            3                       2489999999999999998754311111  1111113366778888752 333433


Q ss_pred             -eCCeEEEE
Q 004581          380 -YSCRLDIL  387 (744)
Q Consensus       380 -~~~~i~i~  387 (744)
                       .++.+++.
T Consensus       354 ~~~kkleiL  362 (364)
T KOG0290|consen  354 CFGKKLEIL  362 (364)
T ss_pred             EecCeeeEE
Confidence             23344443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=6.6e-15  Score=146.59  Aligned_cols=326  Identities=15%  Similarity=0.128  Sum_probs=197.8

Q ss_pred             eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEE
Q 004581          193 TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIY  272 (744)
Q Consensus       193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  272 (744)
                      .+++-..++.|.+.|..+.+.+..+....+.-..+.|+|||+++++++.||.|.++|+.+.+.                 
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----------------   70 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----------------   70 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------
Confidence            345667789999999999999999987554445578999999999999999999999998772                 


Q ss_pred             EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEe-cCCCeEEEEecCccCCCCCc
Q 004581          273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISA-GDDTKLFAYCANEFTKFSPH  351 (744)
Q Consensus       273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~-~~d~~i~~~~~~~~~~~~~~  351 (744)
                      +..+.. .....+++++         +||+                        +++++ ..++.+.++|..+.+.....
T Consensus        71 v~~i~~-G~~~~~i~~s---------~DG~------------------------~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   71 VATIKV-GGNPRGIAVS---------PDGK------------------------YVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             EEEEE--SSEEEEEEE-----------TTT------------------------EEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             EEEEec-CCCcceEEEc---------CCCC------------------------EEEEEecCCCceeEeccccccceeec
Confidence            444433 3345778887         7776                        66554 57889999999887655443


Q ss_pred             ccCCCCCCCccccccceeecCCeE-EEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC
Q 004581          352 EICPAPQRVPIHLVHNTIFSHTSL-LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG  430 (744)
Q Consensus       352 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  430 (744)
                      .....+.......+..+..+|.+. +++.-...-++|.++.....             .+...............|+|++
T Consensus       117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-------------~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-------------NLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS-------------CEEEEEEE--TTEEEEEE-TTS
T ss_pred             ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc-------------ccceeeecccccccccccCccc
Confidence            322222222334555666677665 66666666677777654422             2222222334667889999999


Q ss_pred             CEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccc------cccEEEEe--eCCCEEEEEeCCCcEEEEEccCCc
Q 004581          431 MLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ------FAHSMIFS--YDSSQLIIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       431 ~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~i~~s--pd~~~l~~~~~dg~i~v~d~~~~~  500 (744)
                      +++.++  .++.+-+++...   ......+.....+....      +-....|.  ..+...++.-....+.+||..+.+
T Consensus       184 ry~~va~~~sn~i~viD~~~---~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk  260 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKT---GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK  260 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTT---TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred             ceeeecccccceeEEEeecc---ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence            987663  666888888754   22333333322221111      11122232  233343333333457788988999


Q ss_pred             eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE----eCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581          501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV----NCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN  576 (744)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~  576 (744)
                      .++++..           .... ..+..+||++++.+.    ...+.|.++|.++.+....+....+..+.++.|++ ||
T Consensus       261 vv~~I~~-----------~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG  327 (369)
T PF02239_consen  261 VVKTIPT-----------QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DG  327 (369)
T ss_dssp             EEEEEE------------SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TS
T ss_pred             EEEEEEC-----------CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CC
Confidence            9999987           3444 788899999999988    45579999999999776666543334599999999 99


Q ss_pred             CeEEEEecCC--eEEEEEcCCCcc
Q 004581          577 NVLIITTSSN--QVYVFDVEAKQL  598 (744)
Q Consensus       577 ~~l~~~~~d~--~v~vwd~~~~~~  598 (744)
                      +.+.++..++  .|.+||..+.++
T Consensus       328 ~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  328 KEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             SEEEEEEE--TTEEEEEETTTTEE
T ss_pred             CEEEEEEecCCCEEEEEECCCcEE
Confidence            9877765543  799999999875

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=2.5e-15  Score=153.30  Aligned_cols=275  Identities=18%  Similarity=0.176  Sum_probs=194.8

Q ss_pred             CeEEEEEccCC-ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581           15 GSVSEWDLYDL-KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS   93 (744)
Q Consensus        15 ~~i~iwd~~~~-~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (744)
                      +.+.+||+... .+...+. -...|.|++|+|...                                             
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p---------------------------------------------  255 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP---------------------------------------------  255 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc---------------------------------------------
Confidence            48999999875 5555565 478999999999874                                             


Q ss_pred             cccCCeEEEEecCCeEEEEEecCCCc--ee-EeecccCccCcEEEEEEecCCCE--EEEEeCCCeEEEEEccCCceEEEE
Q 004581           94 VVEDRRVALACDDGCVRIYRITDSDE--LI-YHRSLPRVSGRVLSVTWSADGNM--LYSGSSDGYIRSWDAKLGYEIYRI  168 (744)
Q Consensus        94 ~~~~~~la~~~~dg~i~iwd~~~~~~--~~-~~~~~~~h~~~V~~~~~s~dg~~--l~t~~~dg~i~vwd~~~~~~~~~~  168 (744)
                          .+||.|+.+|.|.+||+..+..  .. .......|..+|+.+.|-.+..-  +++++.||.|..|+++.-......
T Consensus       256 ----~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~  331 (555)
T KOG1587|consen  256 ----NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG  331 (555)
T ss_pred             ----ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence                5799999999999999985544  21 11233478999999999776554  999999999999987653331111


Q ss_pred             -EecC---CCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCC---Cc-----ceEEEeeccccceeEEEEcCCCC
Q 004581          169 -TVGL---GGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSR---HG-----TLLQAHSFHKGDVNALAAAPSHN  234 (744)
Q Consensus       169 -~~~~---~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~---~~-----~~~~~~~~h~~~v~~l~~~~~~~  234 (744)
                       ....   ..........++++.|.+..  .++.|+.+|.|.-=+..   .+     +.+..+..|.++|.++.++|=+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~  411 (555)
T KOG1587|consen  332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP  411 (555)
T ss_pred             cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence             1100   01111345678999999877  89999999998773322   21     22345667899999999999887


Q ss_pred             EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcc
Q 004581          235 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPID  314 (744)
Q Consensus       235 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (744)
                      .++..+.|.++++|.......                ++..+..+...|.+++|+         |.              
T Consensus       412 k~fls~gDW~vriWs~~~~~~----------------Pl~~~~~~~~~v~~vaWS---------pt--------------  452 (555)
T KOG1587|consen  412 KNFLSVGDWTVRIWSEDVIAS----------------PLLSLDSSPDYVTDVAWS---------PT--------------  452 (555)
T ss_pred             ceeeeeccceeEeccccCCCC----------------cchhhhhccceeeeeEEc---------Cc--------------
Confidence            676666699999998773221                244556677779999997         22              


Q ss_pred             ccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCC
Q 004581          315 FSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENN  394 (744)
Q Consensus       315 ~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~  394 (744)
                               ...+++++..||.|.+||+.....-.                                             
T Consensus       453 ---------rpavF~~~d~~G~l~iWDLl~~~~~P---------------------------------------------  478 (555)
T KOG1587|consen  453 ---------RPAVFATVDGDGNLDIWDLLQDDEEP---------------------------------------------  478 (555)
T ss_pred             ---------CceEEEEEcCCCceehhhhhccccCC---------------------------------------------
Confidence                     22389999999999999997532111                                             


Q ss_pred             cccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeec
Q 004581          395 VESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKK  448 (744)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~  448 (744)
                                     +...... ......+.++++|++|++| ..|.+.+|++..
T Consensus       479 ---------------v~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  479 ---------------VLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ---------------ccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence                           1111111 2455677789999999997 788899999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=4e-15  Score=153.74  Aligned_cols=293  Identities=16%  Similarity=0.164  Sum_probs=196.4

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccC---ccCcEEEEEEec--CCCEEEEEeCCCeEEEEEcc-CC----ceEEE
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPR---VSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAK-LG----YEIYR  167 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~-~~----~~~~~  167 (744)
                      ..++++.+.-.|+|||.+.+..+   ..|..   -...|+.+++-.  |..+|++|+.||.||||+-- ++    +.+..
T Consensus      1077 p~i~~ad~r~~i~vwd~e~~~~l---~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1077 PQIAAADDRERIRVWDWEKGRLL---NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred             ceeEEcCCcceEEEEecccCcee---ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEe
Confidence            68888888889999999977776   44443   345799998854  45689999999999999732 21    22222


Q ss_pred             EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec-cccceeEEEEcC-CCCEEEeecCCCe
Q 004581          168 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAP-SHNRVFSTGSDGQ  244 (744)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~-~~~~l~~~~~dg~  244 (744)
                      .. +..+...+..+.-.-+.|.... +|++++.-..|+|||....+..+.+.. ....|+++.-+- .|+.+++|..||.
T Consensus      1154 w~-~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1154 WS-SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS 1232 (1387)
T ss_pred             ec-cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCc
Confidence            21 1111111111111345666554 777777789999999998777766653 334566665543 4689999999999


Q ss_pred             EEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCc--ceeeeeeccCCCCCCCCcccccccCCCCCCcccccccccc
Q 004581          245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH  322 (744)
Q Consensus       245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  322 (744)
                      |++||.+.....              ..+...+.|+..  |..+.+.         +.|                     
T Consensus      1233 vRvyD~R~a~~d--------------s~v~~~R~h~~~~~Iv~~slq---------~~G--------------------- 1268 (1387)
T KOG1517|consen 1233 VRVYDRRMAPPD--------------SLVCVYREHNDVEPIVHLSLQ---------RQG--------------------- 1268 (1387)
T ss_pred             eEEeecccCCcc--------------ccceeecccCCcccceeEEee---------cCC---------------------
Confidence            999999875421              124566778777  7777774         222                     


Q ss_pred             CCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCC
Q 004581          323 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG  402 (744)
Q Consensus       323 ~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~  402 (744)
                        ...|++|+.||.|++||++.........                              .+.-|+.             
T Consensus      1269 --~~elvSgs~~G~I~~~DlR~~~~e~~~~------------------------------iv~~~~y------------- 1303 (1387)
T KOG1517|consen 1269 --LGELVSGSQDGDIQLLDLRMSSKETFLT------------------------------IVAHWEY------------- 1303 (1387)
T ss_pred             --CcceeeeccCCeEEEEecccCcccccce------------------------------eeecccc-------------
Confidence              2269999999999999998631110000                              0000110             


Q ss_pred             CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEE
Q 004581          403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQL  482 (744)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l  482 (744)
                                     ....+++.++++...+|+|+.+.++||++...  ..........-+......+.+++|+|-.-.|
T Consensus      1304 ---------------Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1304 ---------------GSALTALTVHEHAPIIASGSAQLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred             ---------------CccceeeeeccCCCeeeecCcceEEEEecChh--hhcccccCcccccCcCCCcceeeecchhHhh
Confidence                           13478888999999999988899999999752  2222112222233344478999999999999


Q ss_pred             EEEeCCCcEEEEEccCCc
Q 004581          483 IIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       483 ~~~~~dg~i~v~d~~~~~  500 (744)
                      |+|+.|..|.||.....+
T Consensus      1367 AaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhccCCceEEEeecCCcC
Confidence            999999999999976543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.8e-15  Score=128.96  Aligned_cols=264  Identities=16%  Similarity=0.211  Sum_probs=186.2

Q ss_pred             cceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581          222 GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED  301 (744)
Q Consensus       222 ~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  301 (744)
                      ..|.+-+++|.+++|++|..+|.|.++.+..-.....       ....-..+...++|..+++.++|.          | 
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------~~~gk~~iv~eqahdgpiy~~~f~----------d-   72 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------EPPGKLKIVPEQAHDGPIYYLAFH----------D-   72 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------CCCCCcceeeccccCCCeeeeeee----------h-
Confidence            3566778999999999999999999999876442111       111112244558999999999983          2 


Q ss_pred             cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581          302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS  381 (744)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  381 (744)
                                              .+|++|+ ||.|+-|.-+++....                                
T Consensus        73 ------------------------~~Lls~g-dG~V~gw~W~E~~es~--------------------------------   95 (325)
T KOG0649|consen   73 ------------------------DFLLSGG-DGLVYGWEWNEEEESL--------------------------------   95 (325)
T ss_pred             ------------------------hheeecc-CceEEEeeehhhhhhc--------------------------------
Confidence                                    2677777 5999998877543211                                


Q ss_pred             CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-EEEEEcCCceEEEEeecCCCCCceEEeee
Q 004581          382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-LFAYSDHVKPSLFELKKGKVGQGEWIINK  460 (744)
Q Consensus       382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~la~~~~~~v~l~~~~~~~~~~~~~~~~~  460 (744)
                      ..-++|.+..+.                  +...-.-..|.++.+.|... .+.++.|+.++.|+++.  +.++      
T Consensus        96 ~~K~lwe~~~P~------------------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~--G~i~------  149 (325)
T KOG0649|consen   96 ATKRLWEVKIPM------------------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED--GRIQ------  149 (325)
T ss_pred             cchhhhhhcCcc------------------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC--CEEE------
Confidence            111223332211                  11011225678888887654 45557999999999986  2332      


Q ss_pred             ccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCC-CCCceEEEEECCCCCEEEEEe
Q 004581          461 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP-SEPPITKMFTSSDGQWLAAVN  539 (744)
Q Consensus       461 ~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdg~~las~~  539 (744)
                      ..+.+|...+.+++--.....+++|++||+++|||+++++.+..+.....  ...+.+ -...|-+++.+.|  +|++|+
T Consensus       150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~--~~~lRp~~g~wigala~~ed--WlvCGg  225 (325)
T KOG0649|consen  150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN--PNLLRPDWGKWIGALAVNED--WLVCGG  225 (325)
T ss_pred             EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC--hhhcCcccCceeEEEeccCc--eEEecC
Confidence            67889999999999866677889999999999999999999988876322  122222 3456788887555  999886


Q ss_pred             CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      . ..+.+|++...++.+.++-.  .++..+.|-   .+.+++++.-+.|.-|.+.+-
T Consensus       226 G-p~lslwhLrsse~t~vfpip--a~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  226 G-PKLSLWHLRSSESTCVFPIP--ARVHLVDFV---DDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             C-CceeEEeccCCCceEEEecc--cceeEeeee---cceEEEeccccceeeeeeccE
Confidence            4 46999999999998888753  489999995   467888888889999987654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.6e-15  Score=136.96  Aligned_cols=313  Identities=12%  Similarity=0.085  Sum_probs=196.8

Q ss_pred             eeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEE
Q 004581           31 LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVR  110 (744)
Q Consensus        31 ~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~  110 (744)
                      +.+|.+.|.++.||.++                                                  ++||+|++|..++
T Consensus        52 ~~~H~GCiNAlqFS~N~--------------------------------------------------~~L~SGGDD~~~~   81 (609)
T KOG4227|consen   52 VREHTGCINALQFSHND--------------------------------------------------RFLASGGDDMHGR   81 (609)
T ss_pred             hhhhccccceeeeccCC--------------------------------------------------eEEeecCCcceee
Confidence            55799999999999998                                                  6999999999999


Q ss_pred             EEEecC------CCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEE
Q 004581          111 IYRITD------SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW  184 (744)
Q Consensus       111 iwd~~~------~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (744)
                      +|++..      .+.+.  ..-..|...|.|++|....++|++|..+++|...|+++.+.+..+...      ...+.|+
T Consensus        82 ~W~~de~~~~k~~KPI~--~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~------~~~~~VY  153 (609)
T KOG4227|consen   82 VWNVDELMVRKTPKPIG--VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN------NNRGDVY  153 (609)
T ss_pred             eechHHHHhhcCCCCce--eccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc------Cccccee
Confidence            999861      22221  112246789999999999999999999999999999999988887631      3456899


Q ss_pred             EEEEecCC-eEEEEcCCCCEEEEeCCCcc-eE--EEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCC
Q 004581          185 SLLSLRCG-TLVSADSTGSVQFWDSRHGT-LL--QAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPND  259 (744)
Q Consensus       185 ~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~--~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~  259 (744)
                      .+..+|.. .|++.+.++.|.+||.+..+ .+  ..+.........+.|+|.. .+|++++..+-+-+||.+....... 
T Consensus       154 ~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~-  232 (609)
T KOG4227|consen  154 HMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY-  232 (609)
T ss_pred             ecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH-
Confidence            99999966 89999999999999998644 11  2223345667889999976 5677888888999999987542100 


Q ss_pred             CCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEE
Q 004581          260 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA  339 (744)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~  339 (744)
                               +......+......-.++.|+         |.|.                        .|.+--....-.+
T Consensus       233 ---------~~~~~~~L~~~~~~~M~~~~~---------~~G~------------------------Q~msiRR~~~P~~  270 (609)
T KOG4227|consen  233 ---------QRSMFKGLPQENTEWMGSLWS---------PSGN------------------------QFMSIRRGKCPLY  270 (609)
T ss_pred             ---------hhhccccCcccchhhhheeeC---------CCCC------------------------eehhhhccCCCEE
Confidence                     000001111111112334443         3332                        2222222222223


Q ss_pred             EecCccCCCCCcccCCCC-CCCccccccceeecCCeEEEEEeCC--eEEEEEeeccCCcccCCCCCCCC--------Ccc
Q 004581          340 YCANEFTKFSPHEICPAP-QRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGHA--------STS  408 (744)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~~~~--------~~~  408 (744)
                      ||+.....+.. ..-..+ .......+.+++|-.|.. +++++.  .+.+|.+........-.. -|+.        -..
T Consensus       271 ~D~~S~R~~V~-k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~-IG~~~~~~~~~~~i~  347 (609)
T KOG4227|consen  271 FDFISQRCFVL-KSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQ-IGHDEEEMPSEIFIE  347 (609)
T ss_pred             eeeecccceeE-eccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccc-cCcchhhCchhheec
Confidence            33322110000 000000 011223455677766665 556554  788888876553322100 1110        011


Q ss_pred             eEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEee
Q 004581          409 LLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELK  447 (744)
Q Consensus       409 ~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~  447 (744)
                      .-..+..+|..-+..+.|+|...+|++ |-...+++|.-.
T Consensus       348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            223344577788899999999988887 578888888754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=4.8e-14  Score=139.71  Aligned_cols=486  Identities=13%  Similarity=0.110  Sum_probs=291.5

Q ss_pred             CeEEEEecCCeEEEEEecCCC------------ceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581           98 RRVALACDDGCVRIYRITDSD------------ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                      .++|+|+.||.+++-.+.+..            .+...+++.||.+.|.-+.|+.+.+.|-|...+|-|.||-+-.|.-.
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~  106 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC  106 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH
Confidence            699999999999999886321            23445788999999999999999999999999999999998777655


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEE--EeeccccceeEEEEcCCCCEEEeecCC
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQ--AHSFHKGDVNALAAAPSHNRVFSTGSD  242 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~~~~~d  242 (744)
                      ..+...      ...+.|.+++|..|| .+.....||.|.+=.++ |..+.  .+++  .-...+.|++|.+.++.+-.+
T Consensus       107 EEMiNn------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~an  177 (1189)
T KOG2041|consen  107 EEMINN------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKG--QLLAHVLWSEDLEQALFKKAN  177 (1189)
T ss_pred             HHHhhC------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcch--heccceeecccHHHHHhhhcC
Confidence            444432      467889999999999 88889999998877666 33332  2222  223468899999988888889


Q ss_pred             CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccccc
Q 004581          243 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAH  322 (744)
Q Consensus       243 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  322 (744)
                      |.+.+||....-.....      ..-.-.....+......|..+.+..          |.               .....
T Consensus       178 ge~hlydnqgnF~~Kl~------~~c~Vn~tg~~s~~~~kia~i~w~~----------g~---------------~~~v~  226 (1189)
T KOG2041|consen  178 GETHLYDNQGNFERKLE------KDCEVNGTGIFSNFPTKIAEIEWNT----------GP---------------YQPVP  226 (1189)
T ss_pred             CcEEEecccccHHHhhh------hceEEeeeeeecCCCccccceeecc----------Cc---------------cccCC
Confidence            99999997654210000      0000000111112222344444421          10               01124


Q ss_pred             CCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCC
Q 004581          323 LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSG  402 (744)
Q Consensus       323 ~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~  402 (744)
                      |+.+.|+.+-..|.+.+-.-.+.......      .  ..-.+..+.|+++|.+|+..+....--.-...+ ..---+.-
T Consensus       227 pdrP~lavcy~nGr~QiMR~eND~~Pvv~------d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n-~v~Fysp~  297 (1189)
T KOG2041|consen  227 PDRPRLAVCYANGRMQIMRSENDPEPVVV------D--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSN-KVHFYSPY  297 (1189)
T ss_pred             CCCCEEEEEEcCceehhhhhcCCCCCeEE------e--cccEeecceecCCCcEEEEccCcccccCccccc-eEEEeccc
Confidence            46679999999998877544332111000      0  013466889999999998654421110000000 00000000


Q ss_pred             CCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecC--------------------CCCCceEEeeecc
Q 004581          403 GHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKG--------------------KVGQGEWIINKRQ  462 (744)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~--------------------~~~~~~~~~~~~~  462 (744)
                      |    +.+..++.++ ..|++++|-..|-.+|.+-++.|.+=+++..                    ...+.+|+..+.+
T Consensus       298 G----~i~gtlkvpg-~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne  372 (1189)
T KOG2041|consen  298 G----HIVGTLKVPG-SCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE  372 (1189)
T ss_pred             h----hheEEEecCC-ceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence            1    1445555443 6788888888887777776666554443320                    1122344433211


Q ss_pred             C-------------------------Ccccc---------cc-----------------cE---EEEeeCCCEEEEEeCC
Q 004581          463 L-------------------------PRKLQ---------FA-----------------HS---MIFSYDSSQLIIAGHD  488 (744)
Q Consensus       463 ~-------------------------~~~~~---------~v-----------------~~---i~~spd~~~l~~~~~d  488 (744)
                      -                         .++.+         .+                 +.   .-..-++.+++.++.+
T Consensus       373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e  452 (1189)
T KOG2041|consen  373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE  452 (1189)
T ss_pred             hhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc
Confidence            0                         00000         00                 00   0001234566666655


Q ss_pred             CcEEEEEccCCceeeeeccCc--------------cccc-------ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Q 004581          489 RRIYVVDVSSSELLHTFTPCR--------------EEHD-------REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF  547 (744)
Q Consensus       489 g~i~v~d~~~~~~~~~~~~~~--------------~~~~-------~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iw  547 (744)
                       .+.+|.....+...++.+.+              +..+       ..+.+...+|.+++.|.  ++|..+-..|.|+-|
T Consensus       453 -~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd--k~l~vareSG~I~ry  529 (1189)
T KOG2041|consen  453 -RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD--KFLMVARESGGIYRY  529 (1189)
T ss_pred             -cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc--eEEEEEeccCceEEE
Confidence             48888875443322222200              0000       12345678899998864  589999999999999


Q ss_pred             ECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581          548 NLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP  627 (744)
Q Consensus       548 d~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp  627 (744)
                      .+.+.......+.  +..+..++.+- +...||+...-|.+.+.|+.-.--..       .+..-++.....|+++.|..
T Consensus       530 Sl~nv~l~n~y~~--n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g~-------ql~~~~~~errDVWd~~Wa~  599 (1189)
T KOG2041|consen  530 SLNNVVLTNSYPV--NPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDGD-------QLKLIYTSERRDVWDYEWAQ  599 (1189)
T ss_pred             Eecceeeeecccc--CchheeEeecc-CcchhhhhhhhceeeeeecccccCcc-------eeeeeehhhhhhhhhhhhcc
Confidence            9998876555443  35789999988 88889999889999988887211000       11112334457899999999


Q ss_pred             CCCCcEEEEEcCceEEEEeCCCCC
Q 004581          628 SPSSSSVIIYSARAMCVIDFGRPV  651 (744)
Q Consensus       628 dg~~~~~~~~~~~~~~~~~~~~~~  651 (744)
                      | +++.+.+..-..++.++-..|.
T Consensus       600 d-Np~llAlmeKtrmyifrgndpe  622 (1189)
T KOG2041|consen  600 D-NPNLLALMEKTRMYIFRGNDPE  622 (1189)
T ss_pred             C-CchHHhhhhhceEEEecCcCcc
Confidence            8 6766666666667777654443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=3e-14  Score=130.58  Aligned_cols=186  Identities=15%  Similarity=0.131  Sum_probs=149.4

Q ss_pred             eeEEecCC--CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            7 RLFSSSID--GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         7 ~l~~~~~d--~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      ++|..+.+  ..+++++.+.+..+..+. ...+|-+|.++.+                                      
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--------------------------------------   98 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--------------------------------------   98 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--------------------------------------
Confidence            34444433  347888887777777665 4678888888875                                      


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe--CCCeEEEEEccCC
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS--SDGYIRSWDAKLG  162 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~--~dg~i~vwd~~~~  162 (744)
                                    +|++.-++ .|+|||+.+-+.+..+.....+...+.++++++++.+||-=+  ..|.|.+||+.+-
T Consensus        99 --------------RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   99 --------------RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             --------------eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence                          45555443 499999997777744444446777788888888888998643  3689999999999


Q ss_pred             ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC-EEEEeCCCcceEEEeecc--ccceeEEEEcCCCCEEEe
Q 004581          163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS-VQFWDSRHGTLLQAHSFH--KGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~~  238 (744)
                      +.+..+.        .|++.+-+++|+++| +|++++..|+ |||+.+.+|+.+..++--  ...|.+++|+|++++|.+
T Consensus       164 ~~v~~I~--------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  164 QPVNTIN--------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             eeeeEEE--------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            9999998        699999999999999 8999999998 799999999999988743  346899999999999999


Q ss_pred             ecCCCeEEEEEcccCc
Q 004581          239 TGSDGQVILYKASCES  254 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~  254 (744)
                      .+..++|.+|.++...
T Consensus       236 sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVS  251 (391)
T ss_pred             ecCCCeEEEEEecccc
Confidence            9999999999998755

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=5.1e-16  Score=144.88  Aligned_cols=193  Identities=20%  Similarity=0.175  Sum_probs=143.2

Q ss_pred             ccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecC
Q 004581           93 SVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL  172 (744)
Q Consensus        93 ~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~  172 (744)
                      +..+|..||+|+.||++|||++.+...+   .....|.+.|.++.|||||++|++.+.| ..+||++++|..+.+...  
T Consensus       152 f~~~gs~latgg~dg~lRv~~~Ps~~t~---l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~--  225 (398)
T KOG0771|consen  152 FNGDGSKLATGGTDGTLRVWEWPSMLTI---LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP--  225 (398)
T ss_pred             EcCCCCEeeeccccceEEEEecCcchhh---hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC--
Confidence            3345589999999999999998755544   6677899999999999999999999999 999999999977766652  


Q ss_pred             CCCCCCCceeEEEEEEecCC-----eEEEEc-CCCCEEEEeCCCcce-----EEEeeccccceeEEEEcCCCCEEEeecC
Q 004581          173 GGLGSGPELCIWSLLSLRCG-----TLVSAD-STGSVQFWDSRHGTL-----LQAHSFHKGDVNALAAAPSHNRVFSTGS  241 (744)
Q Consensus       173 ~~~~~~~~~~v~~~~~~~~~-----~l~s~~-~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~~~~~  241 (744)
                          .........+.|+.|+     ++++.- ..+.|+.|++.....     ..+...-...|.+++.+++|++++.|+.
T Consensus       226 ----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 ----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             ----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence                1455567778888776     444333 344566665543111     1111122357999999999999999999


Q ss_pred             CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581          242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      ||.|.+++....+.                .....+.|..-|+.+.|+         ||.+                   
T Consensus       302 dGsVai~~~~~lq~----------------~~~vk~aH~~~VT~ltF~---------Pdsr-------------------  337 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQR----------------LQYVKEAHLGFVTGLTFS---------PDSR-------------------  337 (398)
T ss_pred             CCcEEEEEeceeee----------------eEeehhhheeeeeeEEEc---------CCcC-------------------
Confidence            99999999887552                122346799999999998         6655                   


Q ss_pred             cCCCcEEEEecCCCeEEEEecCc
Q 004581          322 HLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       322 ~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                           ++++.+.|....+..+..
T Consensus       338 -----~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  338 -----YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             -----cccccccCCceeEEEEee
Confidence                 677777777777666543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.6e-14  Score=131.73  Aligned_cols=182  Identities=20%  Similarity=0.214  Sum_probs=133.2

Q ss_pred             eEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS   86 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (744)
                      +|++..|-+|++||-+. +....++. -+..|.||+|-|.+.                                      
T Consensus       113 fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa--------------------------------------  153 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA--------------------------------------  153 (445)
T ss_pred             hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc--------------------------------------
Confidence            68889999999999776 55555543 357899999999884                                      


Q ss_pred             ccccccccccCCeEEEEecCCeEEEEEecCCCceeE---------e--ecccCccCcEEEEEEecCCCEEEEEeC-CCeE
Q 004581           87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY---------H--RSLPRVSGRVLSVTWSADGNMLYSGSS-DGYI  154 (744)
Q Consensus        87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~---------~--~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i  154 (744)
                                 ..||+||.. -|.||..........         .  ..-.+| .+|+++.|.+||..|++++. |..|
T Consensus       154 -----------selavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi  220 (445)
T KOG2139|consen  154 -----------SELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI  220 (445)
T ss_pred             -----------ceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence                       478999985 589998862211110         0  122345 68999999999999999986 6789


Q ss_pred             EEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCC
Q 004581          155 RSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPS  232 (744)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~  232 (744)
                      .|||+.+|..+....        .....+.-+.|+||| .|+++.-|+..++|+... .....-.- -.+.|...+|+|+
T Consensus       221 ~iWdpdtg~~~pL~~--------~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspc  291 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIP--------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPC  291 (445)
T ss_pred             EEEcCCCCCcccccc--------cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCC
Confidence            999999998876664        345678889999999 899999999999996543 33222222 3559999999999


Q ss_pred             CCEEEeecCCCeEEEEEcc
Q 004581          233 HNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       233 ~~~l~~~~~dg~i~iw~~~  251 (744)
                      |++|+.+.. |.-++|.+.
T Consensus       292 GsfLLf~~s-gsp~lysl~  309 (445)
T KOG2139|consen  292 GSFLLFACS-GSPRLYSLT  309 (445)
T ss_pred             CCEEEEEEc-CCceEEEEe
Confidence            987765432 334445443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=2.8e-14  Score=145.67  Aligned_cols=282  Identities=15%  Similarity=0.141  Sum_probs=184.9

Q ss_pred             CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcce--EE----Eeeccccc
Q 004581          152 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTL--LQ----AHSFHKGD  223 (744)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~--~~----~~~~h~~~  223 (744)
                      +.+.+|+++.........        .....|.++.|+|..  .++.|..+|.|.+||++.+..  ..    ....|..+
T Consensus       222 ~~~~vW~~~~p~~Pe~~~--------~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL--------ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP  293 (555)
T ss_pred             ceEEEEecCCCCCceEEE--------ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence            479999998763333332        367889999999977  788999999999999987654  22    23458889


Q ss_pred             eeEEEEcCCC--CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcc
Q 004581          224 VNALAAAPSH--NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPED  301 (744)
Q Consensus       224 v~~l~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~  301 (744)
                      ++.+.|..+.  .-+++++.||.|..|+++.-.......+.....     ....-......+++++|.            
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~-----~~~~~~~~~~~~t~~~F~------------  356 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK-----HKGQQSSKAVGATSLKFE------------  356 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----ccccccccccceeeEeec------------
Confidence            9999997654  449999999999999877644211110000000     000111223345566663            


Q ss_pred             cccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC
Q 004581          302 KVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS  381 (744)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  381 (744)
                                          ......++.|+.+|.|..-+-........                 +.+           
T Consensus       357 --------------------~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-----------------~~~-----------  388 (555)
T KOG1587|consen  357 --------------------PTDPNHFIVGTEEGKVYKGCRKGYTPAPE-----------------VSY-----------  388 (555)
T ss_pred             --------------------cCCCceEEEEcCCcEEEEEeccCCccccc-----------------ccc-----------
Confidence                                12334799999999887643332111000                 000           


Q ss_pred             CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCC-CEEEEEcCCceEEEEeecCCCCCceEEeee
Q 004581          382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSG-MLFAYSDHVKPSLFELKKGKVGQGEWIINK  460 (744)
Q Consensus       382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~la~~~~~~v~l~~~~~~~~~~~~~~~~~  460 (744)
                                                 ........|...+.++.++|=+ +++.++.|.+++||.....  ...+     
T Consensus       389 ---------------------------~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--~~Pl-----  434 (555)
T KOG1587|consen  389 ---------------------------KGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--ASPL-----  434 (555)
T ss_pred             ---------------------------cccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--CCcc-----
Confidence                                       0011112345788889999977 4555567999999998631  2222     


Q ss_pred             ccCCcccccccEEEEeeCCC-EEEEEeCCCcEEEEEccCC--ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE
Q 004581          461 RQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSSS--ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA  537 (744)
Q Consensus       461 ~~~~~~~~~v~~i~~spd~~-~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las  537 (744)
                      ..+..+...+++++|||... .++++..+|.|.+||+...  .++.+...           +....+.+.|+++|+.|++
T Consensus       435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-----------~~~~l~~~~~s~~g~~lav  503 (555)
T KOG1587|consen  435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-----------CSPALTRVRWSPNGKLLAV  503 (555)
T ss_pred             hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc-----------cccccceeecCCCCcEEEE
Confidence            22333444699999999765 5567777999999999533  34444443           4566778889999999999


Q ss_pred             EeCCCcEEEEECCC
Q 004581          538 VNCFGDVYIFNLEI  551 (744)
Q Consensus       538 ~~~dg~i~iwd~~~  551 (744)
                      |+..|++++|++..
T Consensus       504 Gd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  504 GDANGTTHILKLSE  517 (555)
T ss_pred             ecCCCcEEEEEcCc
Confidence            99999999999964

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.9e-13  Score=132.51  Aligned_cols=333  Identities=18%  Similarity=0.229  Sum_probs=207.2

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-----eC-----CCeEEEEEccCCceEEEE
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-----SS-----DGYIRSWDAKLGYEIYRI  168 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-----~~-----dg~i~vwd~~~~~~~~~~  168 (744)
                      .+.+-+.+..++|++..+...+.  ..+.   ..+.++.|||-|.+|.|-     ..     .-.+.+|+++++.....+
T Consensus        47 ~lfA~~~~~~v~i~~~~~~~~~l--t~~~---~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~  121 (566)
T KOG2315|consen   47 RLFAYSDNQVVKVFEIATLKVVL--CVEL---KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQI  121 (566)
T ss_pred             cEEEEEcCCeEEEEEccCCcEEE--Eecc---ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhhe
Confidence            45556677899999998665331  2221   178999999999999763     11     235789999997666666


Q ss_pred             EecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCC--CEEEe-----ecC
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSH--NRVFS-----TGS  241 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~~-----~~~  241 (744)
                      ..       ..... |+..|+.|..+++=-..+.+.+|+....+.+ ....|...|..+.++|.+  ..+++     .|.
T Consensus       122 q~-------k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa  192 (566)
T KOG2315|consen  122 QK-------KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA  192 (566)
T ss_pred             eh-------hhhcC-cccccccchhhhhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence            53       22222 8999999986666666788999999863322 334467889999999863  34443     456


Q ss_pred             CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccc
Q 004581          242 DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       242 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      -+.|++|..........              +........+-..+.                                |.
T Consensus       193 Pa~vri~~~~~~~~~~~--------------~a~ksFFkadkvqm~--------------------------------WN  226 (566)
T KOG2315|consen  193 PASVRIYKYPEEGQHQP--------------VANKSFFKADKVQMK--------------------------------WN  226 (566)
T ss_pred             CcEEEEeccccccccch--------------hhhccccccceeEEE--------------------------------ec
Confidence            77899998773321000              000000011111122                                33


Q ss_pred             cCCCcEEEEecC--CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCC
Q 004581          322 HLGVPMLISAGD--DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS  399 (744)
Q Consensus       322 ~~~~~~l~s~~~--d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~  399 (744)
                      ..+..+|+.++.  |.+=.-|                                        -+.-.++-+.+..      
T Consensus       227 ~~gt~LLvLastdVDktn~SY----------------------------------------YGEq~Lyll~t~g------  260 (566)
T KOG2315|consen  227 KLGTALLVLASTDVDKTNASY----------------------------------------YGEQTLYLLATQG------  260 (566)
T ss_pred             cCCceEEEEEEEeecCCCccc----------------------------------------cccceEEEEEecC------
Confidence            333334443332  2110000                                        0111122222111      


Q ss_pred             CCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEE--E-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEe
Q 004581          400 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY--S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS  476 (744)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s  476 (744)
                               .-..+.....++|.++.|+|+|+-+++  | .-.++.+|+++.    ..++++..       ++-+++-|+
T Consensus       261 ---------~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v~df~e-------gpRN~~~fn  320 (566)
T KOG2315|consen  261 ---------ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPVFDFPE-------GPRNTAFFN  320 (566)
T ss_pred             ---------ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEeEeCCC-------CCccceEEC
Confidence                     122334445689999999999987766  4 667888998864    22322221       256788999


Q ss_pred             eCCCEEEEEeC---CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC------CCcEEEE
Q 004581          477 YDSSQLIIAGH---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC------FGDVYIF  547 (744)
Q Consensus       477 pd~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~------dg~i~iw  547 (744)
                      |.|++|+.++-   .|.|.|||+.+.+++..+..             ..-+-+.|+|||++++++..      |+.++||
T Consensus       321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             CCCCEEEEeecCCCCCceEEEeccchhhcccccc-------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence            99999988865   48999999999888888875             33566799999999999875      6779999


Q ss_pred             ECCCcceEEEEecCCCCceeEEeecC
Q 004581          548 NLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       548 d~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      +..+.......-  . .....+.|-|
T Consensus       388 hytG~~l~~~~f--~-sEL~qv~W~P  410 (566)
T KOG2315|consen  388 HYTGSLLHEKMF--K-SELLQVEWRP  410 (566)
T ss_pred             EecCceeehhhh--h-HhHhheeeee
Confidence            988764432211  1 1466778877

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.68  E-value=1.6e-14  Score=151.83  Aligned_cols=185  Identities=17%  Similarity=0.155  Sum_probs=133.4

Q ss_pred             EEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCe
Q 004581           20 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR   99 (744)
Q Consensus        20 wd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (744)
                      |++ .|..+..+..|...|..++.++...                                                 .+
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~-------------------------------------------------s~ 1063 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHT-------------------------------------------------SL 1063 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCC-------------------------------------------------ce
Confidence            664 6788888888999888888876552                                                 58


Q ss_pred             EEEEecCCeEEEEEecC--C--CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEE-EEEecCCC
Q 004581          100 VALACDDGCVRIYRITD--S--DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY-RITVGLGG  174 (744)
Q Consensus       100 la~~~~dg~i~iwd~~~--~--~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~  174 (744)
                      +++|+.||+|++|+...  +  .......++..-..++.++.+.+.++.+|.++.||.|++.++....... ........
T Consensus      1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~ 1143 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP 1143 (1431)
T ss_pred             EEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc
Confidence            99999999999999862  1  2333334444457789999999999999999999999999987621111 11110000


Q ss_pred             CCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEee--ccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          175 LGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHS--FHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       175 ~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                      ........|..-+|....   .++.+...+.|..||.++...+.+++  ...+.|++++.+|.++++++|+..|.+.+||
T Consensus      1144 n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1144 NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWD 1223 (1431)
T ss_pred             cccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEE
Confidence            011222333444444332   67888889999999998766555544  3357899999999999999999999999999


Q ss_pred             cccCc
Q 004581          250 ASCES  254 (744)
Q Consensus       250 ~~~~~  254 (744)
                      ++-+.
T Consensus      1224 LRF~~ 1228 (1431)
T KOG1240|consen 1224 LRFRV 1228 (1431)
T ss_pred             eecCc
Confidence            98754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.1e-15  Score=142.14  Aligned_cols=166  Identities=16%  Similarity=0.150  Sum_probs=129.7

Q ss_pred             eeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccCCeEEEEecC
Q 004581           27 QKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDD  106 (744)
Q Consensus        27 ~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d  106 (744)
                      +...|.||++.|.|++|+.+|                                                  .+|++|++|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG--------------------------------------------------~lL~SGSDD   71 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADG--------------------------------------------------ELLASGSDD   71 (758)
T ss_pred             hhhhhccccceecceeecCCC--------------------------------------------------CEEeecCCc
Confidence            445789999999999999999                                                  699999999


Q ss_pred             CeEEEEEecCCCceeEeecccCccCcEEEEEEec--CCCEEEEEeCCCeEEEEEccCCc----------eEEEEEecCCC
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKLGY----------EIYRITVGLGG  174 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~l~t~~~dg~i~vwd~~~~~----------~~~~~~~~~~~  174 (744)
                      -.+.|||....+.+.  ..-.+|.+.|.|+.|-|  +.+.+++|..|..|+++|+...+          ..+.+.     
T Consensus        72 ~r~ivWd~~~~Kllh--sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-----  144 (758)
T KOG1310|consen   72 TRLIVWDPFEYKLLH--SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-----  144 (758)
T ss_pred             ceEEeecchhcceee--eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh-----
Confidence            999999998555553  33359999999999998  45689999999999999997521          112222     


Q ss_pred             CCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcc-eEE---------EeeccccceeEEEEcCCC-CEEEeecC
Q 004581          175 LGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGT-LLQ---------AHSFHKGDVNALAAAPSH-NRVFSTGS  241 (744)
Q Consensus       175 ~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~-~~~---------~~~~h~~~v~~l~~~~~~-~~l~~~~~  241 (744)
                         .|...|..++-.|++  .+.++++||+|+-+|++... +-.         .+....-...|+..+|.. .+|++|+.
T Consensus       145 ---cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs  221 (758)
T KOG1310|consen  145 ---CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS  221 (758)
T ss_pred             ---hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC
Confidence               577788888888988  89999999999999998521 111         111122356789999964 68889999


Q ss_pred             CCeEEEEEccc
Q 004581          242 DGQVILYKASC  252 (744)
Q Consensus       242 dg~i~iw~~~~  252 (744)
                      |--.++||.+.
T Consensus       222 dpfarLYD~Rr  232 (758)
T KOG1310|consen  222 DPFARLYDRRR  232 (758)
T ss_pred             Cchhhhhhhhh
Confidence            99999999654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=1.1e-12  Score=120.45  Aligned_cols=296  Identities=16%  Similarity=0.156  Sum_probs=201.3

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC--CeEEEEEccCCceEEEEEecCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD--GYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~~  175 (744)
                      ..|..|+.|| -++|+.+.-+..   .........|.-+-||..  ++|..+.+  +.+++.+.+.+..+..+.      
T Consensus        18 ~~lsvGs~~G-yk~~~~~~~~k~---~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~------   85 (391)
T KOG2110|consen   18 TLLSVGSKDG-YKIFSCSPFEKC---FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIF------   85 (391)
T ss_pred             eEEEccCCCc-eeEEecCchHHh---hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEe------
Confidence            5788888887 578877643332   222223345777778754  55555543  469999999999888886      


Q ss_pred             CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeec---cccceeEEEEcCCCCEEEee--cCCCeEEEEEc
Q 004581          176 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF---HKGDVNALAAAPSHNRVFST--GSDGQVILYKA  250 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~~~--~~dg~i~iw~~  250 (744)
                         ....|.++.++.+..++.--+  .|.|||+++.+++.++..   +...+.++.+++++.+++--  ...|.|.+||.
T Consensus        86 ---fpt~IL~VrmNr~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~  160 (391)
T KOG2110|consen   86 ---FPTSILAVRMNRKRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT  160 (391)
T ss_pred             ---cCCceEEEEEccceEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence               678899999987754444333  399999999999988764   44557777777777788853  34789999999


Q ss_pred             ccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEE
Q 004581          251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS  330 (744)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s  330 (744)
                      .+-+                 .+..+..|.+.+-+++|+         ++|.                        +|++
T Consensus       161 ~nl~-----------------~v~~I~aH~~~lAalafs---------~~G~------------------------llAT  190 (391)
T KOG2110|consen  161 INLQ-----------------PVNTINAHKGPLAALAFS---------PDGT------------------------LLAT  190 (391)
T ss_pred             ccce-----------------eeeEEEecCCceeEEEEC---------CCCC------------------------EEEE
Confidence            8865                 377888999999999997         6776                        9999


Q ss_pred             ecCCC-eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC--eEEEEEeeccCCcccCCCCCCC---
Q 004581          331 AGDDT-KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC--RLDILSVRLENNVESRSSSGGH---  404 (744)
Q Consensus       331 ~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~i~i~~~~~~~~~~~~~~~~~~---  404 (744)
                      ++..| .||++.+.+.+.+..++....     ...+.+++|+|++.+|++.++  ++.++.+.......+..+..+.   
T Consensus       191 ASeKGTVIRVf~v~~G~kl~eFRRG~~-----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~  265 (391)
T KOG2110|consen  191 ASEKGTVIRVFSVPEGQKLYEFRRGTY-----PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWF  265 (391)
T ss_pred             eccCceEEEEEEcCCccEeeeeeCCce-----eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCccc
Confidence            99998 568999988777666554332     367889999999999987654  8999988876644333222111   


Q ss_pred             -------------------CCcceEEEEEecCCCCeEEEEEc--CCCCE-EEEEcCCceEEEEeecCCCCCceEEeeecc
Q 004581          405 -------------------ASTSLLVQVKSKASRKIICSTIS--NSGML-FAYSDHVKPSLFELKKGKVGQGEWIINKRQ  462 (744)
Q Consensus       405 -------------------~~~~~~~~~~~~~~~~i~~~~~s--~~g~~-la~~~~~~v~l~~~~~~~~~~~~~~~~~~~  462 (744)
                                         ...+.......+....-..+++.  +.... ++.+.||.++.|.+...+++ ..+-++...
T Consensus       266 ~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gG-ec~lik~h~  344 (391)
T KOG2110|consen  266 GKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGG-ECALIKRHF  344 (391)
T ss_pred             chhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCc-eeEEEEeec
Confidence                               11122233333333322333344  34444 45579999999999884333 334455544


Q ss_pred             CCcc
Q 004581          463 LPRK  466 (744)
Q Consensus       463 ~~~~  466 (744)
                      +.+.
T Consensus       345 ~~~~  348 (391)
T KOG2110|consen  345 LDGS  348 (391)
T ss_pred             cCCc
Confidence            4443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=6e-13  Score=132.68  Aligned_cols=331  Identities=13%  Similarity=0.092  Sum_probs=186.5

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      .+++-..+|.|.+.|..+.+.+   .++......-..++|+|||+++++++.||.|.++|+.+++.+.++..        
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~---~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--------   76 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVV---ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--------   76 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEE---EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------
T ss_pred             EEEEecCCCEEEEEECCCCeEE---EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------
Confidence            3355667899999999877666   56654444445578999999999999999999999999999999983        


Q ss_pred             CceeEEEEEEecCC-eEEE-EcCCCCEEEEeCCCcceEEEeecc-------ccceeEEEEcCCCCEEEeecC-CCeEEEE
Q 004581          179 PELCIWSLLSLRCG-TLVS-ADSTGSVQFWDSRHGTLLQAHSFH-------KGDVNALAAAPSHNRVFSTGS-DGQVILY  248 (744)
Q Consensus       179 ~~~~v~~~~~~~~~-~l~s-~~~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~~~~~-dg~i~iw  248 (744)
                       ......+++++|| ++++ ....+.+.++|.++.+.++.+...       ...+..+..+|....++..-. -+.|.+.
T Consensus        77 -G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV  155 (369)
T PF02239_consen   77 -GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV  155 (369)
T ss_dssp             -SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred             -CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence             3446789999999 5554 456899999999999999887643       245778888888885555544 4778777


Q ss_pred             EcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581          249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML  328 (744)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l  328 (744)
                      |......                ................+.         |+++                        ++
T Consensus       156 dy~d~~~----------------~~~~~i~~g~~~~D~~~d---------pdgr------------------------y~  186 (369)
T PF02239_consen  156 DYSDPKN----------------LKVTTIKVGRFPHDGGFD---------PDGR------------------------YF  186 (369)
T ss_dssp             ETTTSSC----------------EEEEEEE--TTEEEEEE----------TTSS------------------------EE
T ss_pred             Eeccccc----------------cceeeecccccccccccC---------cccc------------------------ee
Confidence            7665431                011111122233345554         4544                        54


Q ss_pred             -EEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCc
Q 004581          329 -ISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAST  407 (744)
Q Consensus       329 -~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~  407 (744)
                       +....+..|-++|..+.....                                      .+..+...          .+
T Consensus       187 ~va~~~sn~i~viD~~~~k~v~--------------------------------------~i~~g~~p----------~~  218 (369)
T PF02239_consen  187 LVAANGSNKIAVIDTKTGKLVA--------------------------------------LIDTGKKP----------HP  218 (369)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEE--------------------------------------EEE-SSSB----------EE
T ss_pred             eecccccceeEEEeeccceEEE--------------------------------------Eeeccccc----------cc
Confidence             445566788888877533111                                      11110000          00


Q ss_pred             ceEEEEEecCCCCeEEEEEcCCCCEE-EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE-
Q 004581          408 SLLVQVKSKASRKIICSTISNSGMLF-AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA-  485 (744)
Q Consensus       408 ~~~~~~~~~~~~~i~~~~~s~~g~~l-a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~-  485 (744)
                      .....+.......+..  .+..+... ..-....+.+|+...    -+.  +++....  ..+ .-+.-+|++++|.+. 
T Consensus       219 ~~~~~~php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~----wkv--v~~I~~~--G~g-lFi~thP~s~~vwvd~  287 (369)
T PF02239_consen  219 GPGANFPHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYA----WKV--VKTIPTQ--GGG-LFIKTHPDSRYVWVDT  287 (369)
T ss_dssp             TTEEEEEETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTB----TSE--EEEEE-S--SSS---EE--TT-SEEEEE-
T ss_pred             cccccccCCCcceEEe--eccccceecccccCCccccchhhc----CeE--EEEEECC--CCc-ceeecCCCCccEEeec
Confidence            0111111111111211  11222222 111222222222211    111  1112222  223 667779999999988 


Q ss_pred             ---eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC--CCcEEEEECCCcceEEEEe
Q 004581          486 ---GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVYIFNLEIQRQHWFIS  559 (744)
Q Consensus       486 ---~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~--dg~i~iwd~~~~~~~~~~~  559 (744)
                         ...+.|.++|.++.+.+.++...          ....+..+.|++||+++..+..  ++.|.|||..+.+....++
T Consensus       288 ~~~~~~~~v~viD~~tl~~~~~i~~~----------~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  288 FLNPDADTVQVIDKKTLKVVKTITPG----------PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             TT-SSHT-EEEEECCGTEEEE-HHHH----------HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCceEEEEECcCcceeEEEecc----------CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence               44589999999999888887641          1234999999999997765544  4469999999999988886

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.8e-15  Score=141.96  Aligned_cols=306  Identities=15%  Similarity=0.207  Sum_probs=215.4

Q ss_pred             CCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe-eccccceeEEEEcCC--CCEEEeecCCCeEEEEEccc
Q 004581          177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SFHKGDVNALAAAPS--HNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~~~~~dg~i~iw~~~~  252 (744)
                      ..|.++|..+.|+..| .|++|+.|..|.+||...++....+ .+|...|....|-|.  ...+++++.||.+++=.+..
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            4799999999999999 8999999999999999988776555 578888888888884  46899999999999877655


Q ss_pred             CcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec
Q 004581          253 ESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG  332 (744)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~  332 (744)
                      ...              ......+..|.+.|.-+++.         |+..                       ..|.+++
T Consensus       219 t~~--------------~e~t~rl~~h~g~vhklav~---------p~sp-----------------------~~f~S~g  252 (559)
T KOG1334|consen  219 TGY--------------VENTKRLAPHEGPVHKLAVE---------PDSP-----------------------KPFLSCG  252 (559)
T ss_pred             ccc--------------eecceecccccCccceeeec---------CCCC-----------------------Ccccccc
Confidence            331              11134566788889888885         3332                       3789999


Q ss_pred             CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEE
Q 004581          333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQ  412 (744)
Q Consensus       333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (744)
                      .|+.+.-+|++.....                         ..+. +.                               +
T Consensus       253 eD~~v~~~Dlr~~~pa-------------------------~~~~-cr-------------------------------~  275 (559)
T KOG1334|consen  253 EDAVVFHIDLRQDVPA-------------------------EKFV-CR-------------------------------E  275 (559)
T ss_pred             cccceeeeeeccCCcc-------------------------ceee-ee-------------------------------c
Confidence            9999998887753211                         0000 00                               0


Q ss_pred             EEecCCCCeEEEEEcCCCC-EEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcc-----cccccEEEEeeCCCEEEEE
Q 004581          413 VKSKASRKIICSTISNSGM-LFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRK-----LQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       413 ~~~~~~~~i~~~~~s~~g~-~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~spd~~~l~~~  485 (744)
                      ...+..-...+++..|-.. .+|+ +.+..+++|+...-......- .-..-++.|     .-.|++++|+.++.-|.+.
T Consensus       276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hhhhcCCccccccCcccceeEEecCCccceeee
Confidence            0000012355677777664 5777 588899999987522210000 001112222     2279999999887777767


Q ss_pred             eCCCcEEEEEcc--CC----------ceeee-eccCcccccccCCCCCCceEEEE-ECCCCCEEEEEeCCCcEEEEECCC
Q 004581          486 GHDRRIYVVDVS--SS----------ELLHT-FTPCREEHDREIQPSEPPITKMF-TSSDGQWLAAVNCFGDVYIFNLEI  551 (744)
Q Consensus       486 ~~dg~i~v~d~~--~~----------~~~~~-~~~~~~~~~~~~~~~~~~i~~l~-~spdg~~las~~~dg~i~iwd~~~  551 (744)
                      -.|-.|+++.-.  .|          ..++. +++|+.         ...|..+. |-|...|+++|+..|.|.||+-.+
T Consensus       355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN---------~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN---------SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             ecccceEEeccccccCCCCCCCcchhhccchhhccccc---------ccccceeeeccCccceEEecCccceEEEEecch
Confidence            777789999643  23          12222 555322         23466665 578999999999999999999999


Q ss_pred             cceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581          552 QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       552 ~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                      ++.+..+.+.+. -|+||.=+| --..||+++-|..|+||.-.+.+
T Consensus       426 ~eii~~MegDr~-VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  426 GEIIRFMEGDRH-VVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             hHHHHHhhcccc-eEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence            998887776554 899999999 77899999999999999875443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.1e-14  Score=148.60  Aligned_cols=173  Identities=16%  Similarity=0.125  Sum_probs=119.9

Q ss_pred             CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccc
Q 004581           14 DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQS   93 (744)
Q Consensus        14 d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (744)
                      +..|.+||..... .+.+..|...+.+++|||||+                                             
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~---------------------------------------------  216 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS---------------------------------------------  216 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC---------------------------------------------
Confidence            4699999986544 566777888999999999994                                             


Q ss_pred             cccCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe-CCCeEEEE--EccCCceEEE
Q 004581           94 VVEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSW--DAKLGYEIYR  167 (744)
Q Consensus        94 ~~~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~dg~i~vw--d~~~~~~~~~  167 (744)
                           .||..+.   +..|++||+.+++.. ....+.+|.   .+++|+|||+.|+.++ .+|.+.||  |+.++. ...
T Consensus       217 -----~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~  286 (429)
T PRK01742        217 -----KLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQ  286 (429)
T ss_pred             -----EEEEEEecCCCcEEEEEeCCCCceE-EEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEe
Confidence                 5555543   347999999765432 224444443   4689999999988765 57765555  665555 344


Q ss_pred             EEecCCCCCCCCceeEEEEEEecCC-eEE-EEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCe
Q 004581          168 ITVGLGGLGSGPELCIWSLLSLRCG-TLV-SADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQ  244 (744)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~  244 (744)
                      +.        .+...+....|+||| .|+ +++.+|..+||++.. +.....+ .+..  .+.+|+|||++|+.++.++ 
T Consensus       287 lt--------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-  354 (429)
T PRK01742        287 LT--------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-  354 (429)
T ss_pred             ec--------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-
Confidence            44        355567889999999 555 445678888887653 2222333 3333  4678999999998887765 


Q ss_pred             EEEEEcccCc
Q 004581          245 VILYKASCES  254 (744)
Q Consensus       245 i~iw~~~~~~  254 (744)
                      +.+||+.++.
T Consensus       355 i~~~Dl~~g~  364 (429)
T PRK01742        355 VVKQDLTSGS  364 (429)
T ss_pred             EEEEECCCCC
Confidence            5568987754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=1.4e-13  Score=123.81  Aligned_cols=246  Identities=13%  Similarity=0.161  Sum_probs=182.4

Q ss_pred             EeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCC
Q 004581          216 AHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRE  295 (744)
Q Consensus       216 ~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  295 (744)
                      .+..-..+|+|.+|++|...++++-....|.||.....+              .|+....+..|...|+.+.++      
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------~w~~~htls~Hd~~vtgvdWa------   64 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------LWEPAHTLSEHDKIVTGVDWA------   64 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------CceeceehhhhCcceeEEeec------
Confidence            344446799999999999999999999999999987754              388889999999999999996      


Q ss_pred             CCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeE
Q 004581          296 DPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL  375 (744)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  375 (744)
                         |..                        +.|++++.|..-++|.........                      |   
T Consensus        65 ---p~s------------------------nrIvtcs~drnayVw~~~~~~~Wk----------------------p---   92 (361)
T KOG1523|consen   65 ---PKS------------------------NRIVTCSHDRNAYVWTQPSGGTWK----------------------P---   92 (361)
T ss_pred             ---CCC------------------------CceeEccCCCCccccccCCCCeec----------------------c---
Confidence               333                        489999999999999774321110                      0   


Q ss_pred             EEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCc
Q 004581          376 LLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQG  454 (744)
Q Consensus       376 ~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~  454 (744)
                             .+                        .+.++    +...+++.|+|.+..+|++ ....|.++-++.   ...
T Consensus        93 -------tl------------------------vLlRi----NrAAt~V~WsP~enkFAVgSgar~isVcy~E~---ENd  134 (361)
T KOG1523|consen   93 -------TL------------------------VLLRI----NRAATCVKWSPKENKFAVGSGARLISVCYYEQ---END  134 (361)
T ss_pred             -------ce------------------------eEEEe----ccceeeEeecCcCceEEeccCccEEEEEEEec---ccc
Confidence                   01                        22233    3778999999999999995 666777888765   222


Q ss_pred             eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc-----C-------------CceeeeeccCcccccccC
Q 004581          455 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS-----S-------------SELLHTFTPCREEHDREI  516 (744)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~~~~~~  516 (744)
                       |=+.+..-..+...|.++.|+|++-+|++|+.|+..+||..-     +             |+++..+.          
T Consensus       135 -WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~----------  203 (361)
T KOG1523|consen  135 -WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS----------  203 (361)
T ss_pred             -eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc----------
Confidence             323333333344589999999999999999999999999752     1             12222222          


Q ss_pred             CCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE-EEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581          517 QPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNNVLIITTSSN  586 (744)
Q Consensus       517 ~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~  586 (744)
                       ...+.+..+.|+|+|..||-.+.|..+.+=|....... ..+...+ -+.+++.|-.  .+.++.++.|.
T Consensus       204 -~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~is--e~~vv~ag~~c  270 (361)
T KOG1523|consen  204 -SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWIS--ENSVVAAGYDC  270 (361)
T ss_pred             -cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeec--CCceeecCCCC
Confidence             25788999999999999999999999999998877532 2333323 5788888875  45677777774

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.62  E-value=9.6e-12  Score=117.93  Aligned_cols=166  Identities=14%  Similarity=0.146  Sum_probs=127.0

Q ss_pred             CCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC-cEEEEEccCCceeeeecc
Q 004581          429 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-RIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       429 ~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~  507 (744)
                      +|.+++.-+.|+..+++...   +..      .++ ++...|.-..+.-+++-++.|..|| .+-|||..+++..+... 
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~---~~~------iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-  399 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWD---GYS------IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-  399 (668)
T ss_pred             CCcEEEEEecCcEEEECCCC---Cee------EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-
Confidence            68888888888877776543   111      112 2333577778888888999999998 89999998777555444 


Q ss_pred             CcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC-
Q 004581          508 CREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN-  586 (744)
Q Consensus       508 ~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~-  586 (744)
                                 .-+.|.++..++||++++++.....|.+.|++++.....-. ...+-|+.++||| +++++|.+-.+| 
T Consensus       400 -----------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~-nsr~iAYafP~gy  466 (668)
T COG4946         400 -----------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHP-NSRWIAYAFPEGY  466 (668)
T ss_pred             -----------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcC-CceeEEEecCcce
Confidence                       47889999999999999999999999999999998754433 3346899999999 999999998876 


Q ss_pred             ---eEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCC
Q 004581          587 ---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS  630 (744)
Q Consensus       587 ---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~  630 (744)
                         .|++||+.+++.-.            .+...+--.+-+|.|||+
T Consensus       467 ~tq~Iklydm~~~Kiy~------------vTT~ta~DfsPaFD~d~r  501 (668)
T COG4946         467 YTQSIKLYDMDGGKIYD------------VTTPTAYDFSPAFDPDGR  501 (668)
T ss_pred             eeeeEEEEecCCCeEEE------------ecCCcccccCcccCCCCc
Confidence               89999999987422            222334455678888864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4.8e-13  Score=122.28  Aligned_cols=306  Identities=11%  Similarity=0.119  Sum_probs=196.7

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeC
Q 004581          131 GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDS  208 (744)
Q Consensus       131 ~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~  208 (744)
                      --+..++|++.-..+|++..|-.|++||-.. .+...++.       .....|.+++|-|.+  .|+.|+.. -|++|..
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsaselavgCr~-gIciW~~  169 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSASELAVGCRA-GICIWSD  169 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCcceeeeeecc-eeEEEEc
Confidence            3577899999777788899999999999765 66666653       467789999999988  56777654 4999976


Q ss_pred             CC----cce----------EEEeeccccceeEEEEcCCCCEEEeecC-CCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581          209 RH----GTL----------LQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYV  273 (744)
Q Consensus       209 ~~----~~~----------~~~~~~h~~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  273 (744)
                      ..    +..          +....+| ..|++|.|.+||..+++++. |..|.+||.+++..                 +
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-----------------~  231 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-----------------I  231 (445)
T ss_pred             CcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-----------------c
Confidence            53    111          1222344 68999999999999998876 78899999998773                 1


Q ss_pred             eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581          274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI  353 (744)
Q Consensus       274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~  353 (744)
                      .....--..+.-+.|+         ||+.                        +|..+.-|+..++|.....-...    
T Consensus       232 pL~~~glgg~slLkwS---------Pdgd------------------------~lfaAt~davfrlw~e~q~wt~e----  274 (445)
T KOG2139|consen  232 PLIPKGLGGFSLLKWS---------PDGD------------------------VLFAATCDAVFRLWQENQSWTKE----  274 (445)
T ss_pred             cccccCCCceeeEEEc---------CCCC------------------------EEEEecccceeeeehhcccceec----
Confidence            1112333456667776         5554                        89999999999999654311000    


Q ss_pred             CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581          354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF  433 (744)
Q Consensus       354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  433 (744)
                                                      -|.                           -....+...+|+|+|++|
T Consensus       275 --------------------------------rw~---------------------------lgsgrvqtacWspcGsfL  295 (445)
T KOG2139|consen  275 --------------------------------RWI---------------------------LGSGRVQTACWSPCGSFL  295 (445)
T ss_pred             --------------------------------cee---------------------------ccCCceeeeeecCCCCEE
Confidence                                            011                           112478888999999999


Q ss_pred             EEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccc
Q 004581          434 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD  513 (744)
Q Consensus       434 a~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~  513 (744)
                      ..+..+.-++|.+........        +.                  -.++......+-|+..   +....+.+-   
T Consensus       296 Lf~~sgsp~lysl~f~~~~~~--------~~------------------~~~~~k~~lliaDL~e---~ti~ag~~l---  343 (445)
T KOG2139|consen  296 LFACSGSPRLYSLTFDGEDSV--------FL------------------RPQSIKRVLLIADLQE---VTICAGQRL---  343 (445)
T ss_pred             EEEEcCCceEEEEeecCCCcc--------cc------------------Ccccceeeeeeccchh---hhhhcCccc---
Confidence            998887878888765111111        00                  0111112223334321   111111000   


Q ss_pred             ccCCCCCCceEEEEECCCCCEEEEEeCCC--------cEEEEECCCcceEEEEe-cC-CCCceeEEeecC--CCCCeEEE
Q 004581          514 REIQPSEPPITKMFTSSDGQWLAAVNCFG--------DVYIFNLEIQRQHWFIS-RL-EGASVTAAGFPP--QNNNVLII  581 (744)
Q Consensus       514 ~~~~~~~~~i~~l~~spdg~~las~~~dg--------~i~iwd~~~~~~~~~~~-~~-~~~~v~~l~~sp--~~~~~l~~  581 (744)
                           -.+++.+++|.|.|.|||+.-..+        .|.+||....-...... +. .+..+..+.|+|  .++.+|.+
T Consensus       344 -----~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsi  418 (445)
T KOG2139|consen  344 -----CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSI  418 (445)
T ss_pred             -----ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEE
Confidence                 367789999999999999975443        46677776544333221 11 123466777877  35667777


Q ss_pred             EecCCeEEEEEcCCC
Q 004581          582 TTSSNQVYVFDVEAK  596 (744)
Q Consensus       582 ~~~d~~v~vwd~~~~  596 (744)
                      +=+.|.+.-|++.-.
T Consensus       419 aWsTGriq~ypl~f~  433 (445)
T KOG2139|consen  419 AWSTGRIQRYPLTFQ  433 (445)
T ss_pred             EeccCceEeeeeEEE
Confidence            777777777776543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=3.3e-12  Score=124.03  Aligned_cols=352  Identities=11%  Similarity=0.145  Sum_probs=212.0

Q ss_pred             CeEEEEEecCCCceeEeecccC--ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEE
Q 004581          107 GCVRIYRITDSDELIYHRSLPR--VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW  184 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~~--h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (744)
                      -.+.+|+........  ..+..  -...+...++|++|+++|.+.. ..++|++..++..+.+..         .. .++
T Consensus        11 e~~~l~~~~~~~~~~--~~f~~~~~~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~---------~~-~~~   77 (566)
T KOG2315|consen   11 EGFYLFNGPGSKDAV--TVFEQNKTSRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE---------LK-KTY   77 (566)
T ss_pred             ceeEEeccCCccccc--cccccCCCCCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec---------cc-eee
Confidence            357888875322221  22221  1445788999999998887764 599999998887555443         23 889


Q ss_pred             EEEEecCC-eEEE-----EcC-----CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581          185 SLLSLRCG-TLVS-----ADS-----TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       185 ~~~~~~~~-~l~s-----~~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                      ++.|+|-+ +|.+     ...     .-.+++|+.+++.....+......-+++.|++|..+.+ =-..+.+.+|+...-
T Consensus        78 ~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f  156 (566)
T KOG2315|consen   78 DLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSF  156 (566)
T ss_pred             eeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCc
Confidence            99999998 4432     111     23478999998665555554333337899999875433 334577999998874


Q ss_pred             cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE----
Q 004581          254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI----  329 (744)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~----  329 (744)
                      .                  .....-|...|..+.++         |...                      ...++    
T Consensus       157 ~------------------~~~~kl~~~~i~~f~lS---------pgp~----------------------~~~vAvyvP  187 (566)
T KOG2315|consen  157 K------------------TIQHKLSVSGITMLSLS---------PGPE----------------------PPFVAVYVP  187 (566)
T ss_pred             c------------------ceeeeeeccceeeEEec---------CCCC----------------------CceEEEEcc
Confidence            3                  22334567778888886         2211                      11232    


Q ss_pred             -EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcc
Q 004581          330 -SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTS  408 (744)
Q Consensus       330 -s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~  408 (744)
                       ..|.-..+++|............              .=.|       .-.+.....|+-..                 
T Consensus       188 e~kGaPa~vri~~~~~~~~~~~~a--------------~ksF-------Fkadkvqm~WN~~g-----------------  229 (566)
T KOG2315|consen  188 EKKGAPASVRIYKYPEEGQHQPVA--------------NKSF-------FKADKVQMKWNKLG-----------------  229 (566)
T ss_pred             CCCCCCcEEEEeccccccccchhh--------------hccc-------cccceeEEEeccCC-----------------
Confidence             23444578888765222111100              0000       00111111121100                 


Q ss_pred             eEEEEEecCCCCeEEEE---EcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581          409 LLVQVKSKASRKIICST---ISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       409 ~~~~~~~~~~~~i~~~~---~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~  485 (744)
                                ..+..++   ++..++  .+=.+.+++++.+..   ....     ..+. ..++|+++.|+|+|+-+++.
T Consensus       230 ----------t~LLvLastdVDktn~--SYYGEq~Lyll~t~g---~s~~-----V~L~-k~GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  230 ----------TALLVLASTDVDKTNA--SYYGEQTLYLLATQG---ESVS-----VPLL-KEGPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             ----------ceEEEEEEEeecCCCc--cccccceEEEEEecC---ceEE-----EecC-CCCCceEEEECCCCCEEEEE
Confidence                      0011100   111110  000122344444431   1121     1222 23489999999999876554


Q ss_pred             --eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---CCcEEEEECCCcceEEEEec
Q 004581          486 --GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISR  560 (744)
Q Consensus       486 --~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~  560 (744)
                        -.-..+.|||+. +.++..|.             .++-+.+-|+|.|++|+.++.   .|.|.|||+.+.+++..+..
T Consensus       289 yGfMPAkvtifnlr-~~~v~df~-------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a  354 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLR-GKPVFDFP-------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA  354 (566)
T ss_pred             EecccceEEEEcCC-CCEeEeCC-------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence              456789999985 67776664             677889999999999988764   57899999999777665543


Q ss_pred             CCCCceeEEeecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 004581          561 LEGASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL  598 (744)
Q Consensus       561 ~~~~~v~~l~~sp~~~~~l~~~~~------d~~v~vwd~~~~~~  598 (744)
                         ..-+-+.|+| ||+++++++.      |+.++||++.+..+
T Consensus       355 ---~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l  394 (566)
T KOG2315|consen  355 ---ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLL  394 (566)
T ss_pred             ---CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCcee
Confidence               2446689999 9999999875      78999999988754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.61  E-value=7.2e-14  Score=123.69  Aligned_cols=233  Identities=12%  Similarity=0.146  Sum_probs=166.0

Q ss_pred             CCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC-----EEEEEcCCceEEEEeecCCCCCce
Q 004581          381 SCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM-----LFAYSDHVKPSLFELKKGKVGQGE  455 (744)
Q Consensus       381 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-----~la~~~~~~v~l~~~~~~~~~~~~  455 (744)
                      .+.+.|..+.....+             .+..-...|..+++.+-|.|+.+     +||+ ++..+|+|++...+.....
T Consensus        72 ~Nkvqiv~ld~~s~e-------------~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~  137 (364)
T KOG0290|consen   72 NNKVQIVQLDEDSGE-------------LVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVEL  137 (364)
T ss_pred             CCeeEEEEEccCCCc-------------eeccCCCCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceeh
Confidence            356777776644433             34444467788999999999873     4444 4558999999863332221


Q ss_pred             E-EeeeccCCcccccccEEEEee-CCCEEEEEeCCCcEEEEEccCCc---eeeeeccCcccccccCCCCCCceEEEEECC
Q 004581          456 W-IINKRQLPRKLQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVSSSE---LLHTFTPCREEHDREIQPSEPPITKMFTSS  530 (744)
Q Consensus       456 ~-~~~~~~~~~~~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  530 (744)
                      - .+...+-..+..++++..|.. |-+++.+.+-|-+..|||++++.   ...++-.           |..+|..++|+.
T Consensus       138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA-----------HDKEV~DIaf~~  206 (364)
T KOG0290|consen  138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA-----------HDKEVYDIAFLK  206 (364)
T ss_pred             hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe-----------cCcceeEEEecc
Confidence            0 011222334445889999975 66788888999999999998763   3455555           999999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEECCCcceEEEEecCC--CCceeEEeecCCCCCeEEEEecCC-eEEEEEcCCCcccccccccc
Q 004581          531 DGQ-WLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLGEWSMQHT  606 (744)
Q Consensus       531 dg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~l~~~~~d~-~v~vwd~~~~~~~~ws~~~~  606 (744)
                      .+. .+|+.+.||.|++||+...+.-..+....  ..+...++|+++|.++||+-..|. .|.|.|+..-.         
T Consensus       207 ~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~---------  277 (364)
T KOG0290|consen  207 GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC---------  277 (364)
T ss_pred             CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---------
Confidence            654 78999999999999999877654443221  357889999999999999987765 89999998664         


Q ss_pred             CCcccccccCCCceEEEEeCCCCCCcEEEEEcCce-EEEEeCCC
Q 004581          607 FVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA-MCVIDFGR  649 (744)
Q Consensus       607 ~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~-~~~~~~~~  649 (744)
                       ....++++|.+.|.+|+|.|. ++..+...+... ....|+.+
T Consensus       278 -tpva~L~~H~a~VNgIaWaPh-S~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  278 -TPVARLRNHQASVNGIAWAPH-SSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             -cceehhhcCcccccceEecCC-CCceeeecCCcceEEEEeccc
Confidence             356789999999999999997 445554433332 33456654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=3.4e-12  Score=114.98  Aligned_cols=161  Identities=16%  Similarity=0.204  Sum_probs=122.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEcc
Q 004581          419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVS  497 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~  497 (744)
                      ..|.++.++++  .|++...+.|++|.+..  ....+..+.+..-+   .+.++++-+.+..+||.-+. -|.|+|-|+.
T Consensus        95 ~~I~~V~l~r~--riVvvl~~~I~VytF~~--n~k~l~~~et~~NP---kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~  167 (346)
T KOG2111|consen   95 SEIKAVKLRRD--RIVVVLENKIYVYTFPD--NPKLLHVIETRSNP---KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLA  167 (346)
T ss_pred             cceeeEEEcCC--eEEEEecCeEEEEEcCC--ChhheeeeecccCC---CceEeecCCCCceEEEcCCCccceEEEEEhh
Confidence            77888888764  57788888999999875  22222223322212   24555554445556665544 6999999997


Q ss_pred             CCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCc-EEEEECCCcceEEEEecCC-CCceeEEeecC
Q 004581          498 SSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD-VYIFNLEIQRQHWFISRLE-GASVTAAGFPP  573 (744)
Q Consensus       498 ~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~l~~sp  573 (744)
                      ..+.  -..+..           |.+.|.+++.+.+|..+|++|..|+ |+|||..+++.+..+.+.. ...|.+|+|||
T Consensus       168 ~~~~~~p~~I~A-----------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp  236 (346)
T KOG2111|consen  168 STKPNAPSIINA-----------HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP  236 (346)
T ss_pred             hcCcCCceEEEc-----------ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence            5544  245555           9999999999999999999999997 7899999999998887643 37899999999


Q ss_pred             CCCCeEEEEecCCeEEEEEcCCCcc
Q 004581          574 QNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       574 ~~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                       +..+|+++++-|+|+||.+.....
T Consensus       237 -~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  237 -NSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             -CccEEEEEcCCCeEEEEEeecCCC
Confidence             999999999999999999986543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=2e-12  Score=129.62  Aligned_cols=289  Identities=16%  Similarity=0.228  Sum_probs=183.4

Q ss_pred             CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-----cCCceEEEEeecCCCCCceE
Q 004581          382 CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-----DHVKPSLFELKKGKVGQGEW  456 (744)
Q Consensus       382 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-----~~~~v~l~~~~~~~~~~~~~  456 (744)
                      +.|.+++++.....           ...+..  ........-++++|++++|.+.     ..+.|..|++....+.... 
T Consensus        13 ~gI~~~~~d~~~g~-----------l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~-   78 (345)
T PF10282_consen   13 GGIYVFRFDEETGT-----------LTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL-   78 (345)
T ss_dssp             TEEEEEEEETTTTE-----------EEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE-
T ss_pred             CcEEEEEEcCCCCC-----------ceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE-
Confidence            47777777554432           112222  2234667778899999998885     2468888998862123322 


Q ss_pred             EeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEccC-Cceeee---e--ccCcccccccCCCCCCceEEEEEC
Q 004581          457 IINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDVSS-SELLHT---F--TPCREEHDREIQPSEPPITKMFTS  529 (744)
Q Consensus       457 ~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~~~-~~~~~~---~--~~~~~~~~~~~~~~~~~i~~l~~s  529 (744)
                       +....  ......+.++++|++++|+++.. +|.|.++++.. |.+...   +  .+......++   ......++.|+
T Consensus        79 -~~~~~--~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq---~~~h~H~v~~~  152 (345)
T PF10282_consen   79 -LNSVP--SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ---EGPHPHQVVFS  152 (345)
T ss_dssp             -EEEEE--ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT---SSTCEEEEEE-
T ss_pred             -eeeec--cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccc---ccccceeEEEC
Confidence             22222  12336778999999999999976 89999999975 544332   1  1111111122   23447899999


Q ss_pred             CCCCEEEEEeC-CCcEEEEECCCcc--e--EEEEecCCCCceeEEeecCCCCCeEEEEec-CCeEEEEEcC--CCccccc
Q 004581          530 SDGQWLAAVNC-FGDVYIFNLEIQR--Q--HWFISRLEGASVTAAGFPPQNNNVLIITTS-SNQVYVFDVE--AKQLGEW  601 (744)
Q Consensus       530 pdg~~las~~~-dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~-d~~v~vwd~~--~~~~~~w  601 (744)
                      |||++|++.+. ...|++|+++...  .  ...+....+..+++++|+| +++++.+..+ +++|.+|++.  ++.++..
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence            99999988764 4579999997655  2  2233344557899999999 9998877765 5699999998  5554331


Q ss_pred             cccccCCcccccccCCCceEEEEeCCCCCCcEEEEEc--CceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCccccc
Q 004581          602 SMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYS--ARAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRL  679 (744)
Q Consensus       602 s~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (744)
                        +....++..+.+. ....+|+++|||  ..+++.+  .+.+..+++...-             -.|+.+...++.++.
T Consensus       232 --~~~~~~~~~~~~~-~~~~~i~ispdg--~~lyvsnr~~~sI~vf~~d~~~-------------g~l~~~~~~~~~G~~  293 (345)
T PF10282_consen  232 --QTISTLPEGFTGE-NAPAEIAISPDG--RFLYVSNRGSNSISVFDLDPAT-------------GTLTLVQTVPTGGKF  293 (345)
T ss_dssp             --EEEESCETTSCSS-SSEEEEEE-TTS--SEEEEEECTTTEEEEEEECTTT-------------TTEEEEEEEEESSSS
T ss_pred             --EEeeecccccccc-CCceeEEEecCC--CEEEEEeccCCEEEEEEEecCC-------------CceEEEEEEeCCCCC
Confidence              1112333332222 378899999996  4555553  4557777763210             014444455566666


Q ss_pred             cccccccccccccccCCcceEEEecccceEEeeecCCCeEEEEecCh
Q 004581          680 KRKLRDCQTESNKLHGRKNFEFFAFRDPVLFIGHLSKSSMLIIDKPW  726 (744)
Q Consensus       680 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~vve~p~  726 (744)
                      ||                .|. +++.+.+|+++..+++.+.++++-.
T Consensus       294 Pr----------------~~~-~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  294 PR----------------HFA-FSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EE----------------EEE-E-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             cc----------------EEE-EeCCCCEEEEEecCCCeEEEEEEeC
Confidence            77                788 7899999999999999999999853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.1e-13  Score=143.24  Aligned_cols=170  Identities=16%  Similarity=0.132  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe-CCCcEEEEEccC
Q 004581          422 ICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG-HDRRIYVVDVSS  498 (744)
Q Consensus       422 ~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~-~dg~i~v~d~~~  498 (744)
                      ..++|+|||+.|+++  .++...||.++... + ..     ..+..+...+....|+|||+.|+..+ .+|...||++..
T Consensus       251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~-~-~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANG-G-TP-----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CceeECCCCCEEEEEEecCCcEEEEEEECCC-C-Ce-----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            357899999988874  57777777665411 1 11     22333344677899999999887665 478888887743


Q ss_pred             -CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCC
Q 004581          499 -SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN  577 (744)
Q Consensus       499 -~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~  577 (744)
                       +.....+ .           +..  ....|||||++|++++.++ +.+||+.+++....... .  ....++|+| |++
T Consensus       324 ~~~~~~~l-~-----------~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~--~~~~~~~sP-dG~  384 (429)
T PRK01742        324 SGGGASLV-G-----------GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F--LDESPSISP-NGI  384 (429)
T ss_pred             CCCCeEEe-c-----------CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C--CCCCceECC-CCC
Confidence             2222222 2           333  4578999999999887765 66799998876433322 1  345678999 999


Q ss_pred             eEEEEecCCeEEEEEcC--CCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581          578 VLIITTSSNQVYVFDVE--AKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       578 ~l~~~~~d~~v~vwd~~--~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd  628 (744)
                      +|++++.++.+.+|.+.  +|.           ..+.+..+.+.+..++|||-
T Consensus       385 ~i~~~s~~g~~~~l~~~~~~G~-----------~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        385 MIIYSSTQGLGKVLQLVSADGR-----------FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEEEcCCCceEEEEEECCCC-----------ceEEccCCCCCCCCcccCCC
Confidence            99999999988877753  332           24456667788899999984

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=8.6e-13  Score=132.36  Aligned_cols=450  Identities=13%  Similarity=0.118  Sum_probs=267.1

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      ++.+|-|+ ...|.+-|..+.+.++++.-|...|+.+.|.|-.-.-...                               
T Consensus        26 ~GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~ll-------------------------------   73 (1062)
T KOG1912|consen   26 SGLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLL-------------------------------   73 (1062)
T ss_pred             cceEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhcc-------------------------------
Confidence            45555555 5789999999999999999999999999999865211000                               


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC---C-CEEEEEeCCCeEEEEEcc
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD---G-NMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d---g-~~l~t~~~dg~i~vwd~~  160 (744)
                       .+.      .-.-+||++...|.|.+||...+...   ..+..|..+|..++|-+.   . ..|+.-....+|.+|+..
T Consensus        74 -S~~------~~~lliAsaD~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd  143 (1062)
T KOG1912|consen   74 -SPS------SSQLLIASADISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD  143 (1062)
T ss_pred             -Ccc------ccceeEEeccccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence             000      01137899999999999999866655   678889999999999763   3 466666667799999999


Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-------cceEEEeecccc---------
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-------GTLLQAHSFHKG---------  222 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-------~~~~~~~~~h~~---------  222 (744)
                      +|+......        .......|+.+.|-.  .+...+..|.+.+-+.-.       |+..+.-..|..         
T Consensus       144 tG~k~Wk~~--------ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a  215 (1062)
T KOG1912|consen  144 TGEKFWKYD--------YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA  215 (1062)
T ss_pred             CCceeeccc--------cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence            999998876        344556667777754  566666667666654321       233332222211         


Q ss_pred             -------c---------eeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceee
Q 004581          223 -------D---------VNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRAL  286 (744)
Q Consensus       223 -------~---------v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  286 (744)
                             .         ...++|+|.-+.++.......+.++|++-..                 ++....-..+.+.-+
T Consensus       216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~-----------------~l~vvpier~~akfv  278 (1062)
T KOG1912|consen  216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC-----------------CLAVVPIERGGAKFV  278 (1062)
T ss_pred             ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-----------------eeEEEEeccCCccee
Confidence                   0         1234667765555555567778999987755                 233333344444444


Q ss_pred             eeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcc--------------
Q 004581          287 TVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE--------------  352 (744)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~--------------  352 (744)
                      .+-         |+.                      ..+.|+....||.+.+|-.+.........              
T Consensus       279 ~vl---------P~~----------------------~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~  327 (1062)
T KOG1912|consen  279 DVL---------PDP----------------------RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV  327 (1062)
T ss_pred             Eec---------cCC----------------------CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence            443         332                      33578999999999998765422111100              


Q ss_pred             cCCCCCCCcccccccee-ecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCC
Q 004581          353 ICPAPQRVPIHLVHNTI-FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGM  431 (744)
Q Consensus       353 ~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  431 (744)
                      .++.....  ..+...+ ..|+-..+...++...+|.+..+.........    ..           .-  -..|+-++.
T Consensus       328 vr~m~~~r--p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~----~i-----------el--~~pf~f~~~  388 (1062)
T KOG1912|consen  328 VRPMEEFR--PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS----SI-----------EL--VLPFDFNLS  388 (1062)
T ss_pred             Eeechhcc--cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc----cc-----------cc--cccccccCc
Confidence            00000000  0000000 01222223334456667776643321100000    00           00  001111111


Q ss_pred             E--------EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC-------CEEEEEeCCCcEEEEEc
Q 004581          432 L--------FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-------SQLIIAGHDRRIYVVDV  496 (744)
Q Consensus       432 ~--------la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-------~~l~~~~~dg~i~v~d~  496 (744)
                      -        +-.+.||.     .   ..+...-..  ...+    ...-..-.|.+       .++|.|...|+|.++|+
T Consensus       389 ~~~v~k~~l~~LS~dg~-----h---~sGs~~~~~--~p~p----~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv  454 (1062)
T KOG1912|consen  389 TKLVGKTSLISLSDDGS-----H---SSGSTCVRM--RPMP----ELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV  454 (1062)
T ss_pred             eeehhhccccchhhcCC-----C---CCCceeeec--ccCc----ccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence            1        11122210     0   001110000  0000    01111111212       36789999999999999


Q ss_pred             cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEE---------eCCCcEEEEECCCcceEEE--EecCCCCc
Q 004581          497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAV---------NCFGDVYIFNLEIQRQHWF--ISRLEGAS  565 (744)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~---------~~dg~i~iwd~~~~~~~~~--~~~~~~~~  565 (744)
                      .++..-+.|..           |...|.++.|-.+.+++-.+         ..-+.+.|-|+.+|.....  ++.....+
T Consensus       455 st~~v~~~fsv-----------ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~desp  523 (1062)
T KOG1912|consen  455 STNAVAASFSV-----------HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESP  523 (1062)
T ss_pred             cchhhhhhhcc-----------cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCc
Confidence            99998888888           89999999998777655332         2234577889998865433  24445589


Q ss_pred             eeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581          566 VTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       566 v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                      |+.+..|. .++||+..-.|.-+.+||+++-.
T Consensus       524 I~~irvS~-~~~yLai~Fr~~plEiwd~kt~~  554 (1062)
T KOG1912|consen  524 IRAIRVSS-SGRYLAILFRREPLEIWDLKTLR  554 (1062)
T ss_pred             ceeeeecc-cCceEEEEecccchHHHhhccch
Confidence            99999999 99999999999999999997764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=2.1e-13  Score=123.10  Aligned_cols=153  Identities=16%  Similarity=0.255  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCEEEEE-c----------CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE--eCC
Q 004581          422 ICSTISNSGMLFAYS-D----------HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA--GHD  488 (744)
Q Consensus       422 ~~~~~s~~g~~la~~-~----------~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~--~~d  488 (744)
                      ..+.|+|+|.+|++- .          -+...+|.++..+.....     ..+.. ..+|.+++|+|+|+.+|+.  ..+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~-----i~l~~-~~~I~~~~WsP~g~~favi~g~~~   82 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES-----IELKK-EGPIHDVAWSPNGNEFAVIYGSMP   82 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce-----eeccC-CCceEEEEECcCCCEEEEEEccCC
Confidence            456799999888762 2          124567777543322222     22222 2269999999999997655  356


Q ss_pred             CcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---CCcEEEEECCCcceEEEEecCCCCc
Q 004581          489 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISRLEGAS  565 (744)
Q Consensus       489 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~~~  565 (744)
                      +.|.+||++ ++.+..+.             ...+..+.|||+|++||+++.   .|.|.+||+++.+.+....  | ..
T Consensus        83 ~~v~lyd~~-~~~i~~~~-------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~  145 (194)
T PF08662_consen   83 AKVTLYDVK-GKKIFSFG-------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SD  145 (194)
T ss_pred             cccEEEcCc-ccEeEeec-------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-Cc
Confidence            799999996 66666664             456788999999999999874   4679999999887765543  2 36


Q ss_pred             eeEEeecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 004581          566 VTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL  598 (744)
Q Consensus       566 v~~l~~sp~~~~~l~~~~~------d~~v~vwd~~~~~~  598 (744)
                      ++.++|+| ||++|++++.      |+.++||++.+.++
T Consensus       146 ~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  146 ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             EEEEEEcC-CCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            89999999 9999999874      78999999987754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=8.2e-12  Score=128.96  Aligned_cols=131  Identities=16%  Similarity=0.193  Sum_probs=90.8

Q ss_pred             cccEEEEeeCCCEEEEEeCC-C--cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---C
Q 004581          469 FAHSMIFSYDSSQLIIAGHD-R--RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---G  542 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g  542 (744)
                      .+....|+|||+.|+..+.+ +  .|+++|+.+++.. .+..           +........|||||++|+..+.+   .
T Consensus       288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-----------~~~~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-----------EGSQNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-----------CCCCccCEEECCCCCEEEEEEccCCCc
Confidence            45677888998888776653 3  4555566665443 3332           23445678999999999887643   3


Q ss_pred             cEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC---eEEEEEcCCCccccccccccCCcccccccCCCc
Q 004581          543 DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGE  619 (744)
Q Consensus       543 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~  619 (744)
                      .|++||+++++... +...  .......|+| ||++|+.++.++   .+.+++++++.            ...+.++.+.
T Consensus       356 ~I~~~dl~~g~~~~-Lt~~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~------------~~~l~~~~~~  419 (429)
T PRK03629        356 HIAKQDLATGGVQV-LTDT--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF------------KARLPATDGQ  419 (429)
T ss_pred             eEEEEECCCCCeEE-eCCC--CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC------------eEECccCCCC
Confidence            58899999887543 3221  1344678999 999999999886   37788886664            2346667788


Q ss_pred             eEEEEeCC
Q 004581          620 VIGLSFSP  627 (744)
Q Consensus       620 v~~i~fsp  627 (744)
                      +...+|+|
T Consensus       420 ~~~p~Wsp  427 (429)
T PRK03629        420 VKFPAWSP  427 (429)
T ss_pred             cCCcccCC
Confidence            88899988

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=3.1e-11  Score=121.09  Aligned_cols=307  Identities=18%  Similarity=0.198  Sum_probs=189.5

Q ss_pred             EEEEcCC----CCEEEEeC--CCcceE--EEeeccccceeEEEEcCCCCEEEeecC----CCeEEEEEcccCcCCCCCCC
Q 004581          194 LVSADST----GSVQFWDS--RHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGS----DGQVILYKASCESIGPNDGL  261 (744)
Q Consensus       194 l~s~~~d----g~i~vwd~--~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~  261 (744)
                      ++.|+..    +.|.+|++  +++++.  .... .......++++|++++|++...    ++.|..|++....       
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-------   73 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-------   73 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-------
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-------
Confidence            4455544    67888877  445443  2222 3455677999999999998866    5799999988742       


Q ss_pred             CcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec-CCCeEEEE
Q 004581          262 SSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAY  340 (744)
Q Consensus       262 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~-~d~~i~~~  340 (744)
                            .....+............++++         ++++                        +|+++. .++.+.++
T Consensus        74 ------g~L~~~~~~~~~g~~p~~i~~~---------~~g~------------------------~l~vany~~g~v~v~  114 (345)
T PF10282_consen   74 ------GTLTLLNSVPSGGSSPCHIAVD---------PDGR------------------------FLYVANYGGGSVSVF  114 (345)
T ss_dssp             ------TEEEEEEEEEESSSCEEEEEEC---------TTSS------------------------EEEEEETTTTEEEEE
T ss_pred             ------ceeEEeeeeccCCCCcEEEEEe---------cCCC------------------------EEEEEEccCCeEEEE
Confidence                  1122233333333444556665         5554                        555554 58899999


Q ss_pred             ecCccCCCCCc-------ccCCCCCCCccccccceeecCCeEEEEEe---CCeEEEEEeeccCCcccCCCCCCCCCcceE
Q 004581          341 CANEFTKFSPH-------EICPAPQRVPIHLVHNTIFSHTSLLLVQY---SCRLDILSVRLENNVESRSSSGGHASTSLL  410 (744)
Q Consensus       341 ~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  410 (744)
                      ++.....+...       ...+.+.+........+.++|++++++..   .+.+.+|++......           ....
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-----------l~~~  183 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-----------LTPV  183 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-----------EEEE
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-----------EEEe
Confidence            99763222111       01122333444667789999999877654   458888888765422           1124


Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeec-cCCcc---cccccEEEEeeCCCEEEE
Q 004581          411 VQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKR-QLPRK---LQFAHSMIFSYDSSQLII  484 (744)
Q Consensus       411 ~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~---~~~v~~i~~spd~~~l~~  484 (744)
                      ..+..+.....+.++|+|+|+++.+.  .++.|.+|++....+....  +... .++..   ......|+++|||++|.+
T Consensus       184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv  261 (345)
T PF10282_consen  184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--IQTISTLPEGFTGENAPAEIAISPDGRFLYV  261 (345)
T ss_dssp             EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE--EEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred             eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE--EEEeeeccccccccCCceeEEEecCCCEEEE
Confidence            45566667889999999999987763  6788999999842332222  2211 12111   125778999999999988


Q ss_pred             EeC-CCcEEEEEcc--CCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEEEC--CCcceEE
Q 004581          485 AGH-DRRIYVVDVS--SSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNL--EIQRQHW  556 (744)
Q Consensus       485 ~~~-dg~i~v~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iwd~--~~~~~~~  556 (744)
                      +.. .+.|.+|++.  ++++  +..+..           .......++++|+|++|+++. .++.|.+|++  +++.+..
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~-----------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPT-----------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEE-----------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeC-----------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            765 6789999993  3433  333332           244588999999999999887 5668999977  4665544


Q ss_pred             EEecCCCCceeEEee
Q 004581          557 FISRLEGASVTAAGF  571 (744)
Q Consensus       557 ~~~~~~~~~v~~l~~  571 (744)
                      .-....-..+.|+.|
T Consensus       331 ~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  331 VGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEESSSEEEEEE
T ss_pred             ecccccCCCCEEEeC
Confidence            332223346777776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=8.4e-15  Score=137.93  Aligned_cols=257  Identities=16%  Similarity=0.221  Sum_probs=201.5

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ++|+.|+..|.|-.+|+.+....   ..+. -...|..+.|-.+.+++|++- ...+.||| ..|..++.++        
T Consensus       142 rhlllgGrKGHlAa~Dw~t~~L~---~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk--------  207 (545)
T KOG1272|consen  142 RHLLLGGRKGHLAAFDWVTKKLH---FEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK--------  207 (545)
T ss_pred             cEEEecCCccceeeeecccceee---eeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh--------
Confidence            79999999999999999865543   2222 345799999999988888875 55999999 5789999987        


Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCC
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                       ....|..+.|.|.. +|++++..|.++.-|+.+|+++..+..-.+.+..++-+|-+..+-+|...|+|.+|......  
T Consensus       208 -~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske--  284 (545)
T KOG1272|consen  208 -RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE--  284 (545)
T ss_pred             -hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc--
Confidence             56788999999999 78899999999999999999999998888999999999999888999999999999987765  


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                     ++..+..|.++|.++++.         ++|                        .++++.|.|..
T Consensus       285 ---------------PLvKiLcH~g~V~siAv~---------~~G------------------------~YMaTtG~Dr~  316 (545)
T KOG1272|consen  285 ---------------PLVKILCHRGPVSSIAVD---------RGG------------------------RYMATTGLDRK  316 (545)
T ss_pred             ---------------hHHHHHhcCCCcceEEEC---------CCC------------------------cEEeecccccc
Confidence                           366778899999999995         444                        49999999999


Q ss_pred             EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEec
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK  416 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (744)
                      +++||++.+..+.....        ...+..+++|..|.+.++....+.||.-..........+           -+...
T Consensus       317 ~kIWDlR~~~ql~t~~t--------p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~p-----------Ym~H~  377 (545)
T KOG1272|consen  317 VKIWDLRNFYQLHTYRT--------PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETP-----------YMNHR  377 (545)
T ss_pred             eeEeeeccccccceeec--------CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcc-----------hhhhc
Confidence            99999998775443331        134567889988988888888999997544321100000           01111


Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC
Q 004581          417 ASRKIICSTISNSGMLFAYSDH  438 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~~la~~~~  438 (744)
                      -...|..+.|.|-...|-+|-.
T Consensus       378 ~~~~V~~l~FcP~EDvLGIGH~  399 (545)
T KOG1272|consen  378 CGGPVEDLRFCPYEDVLGIGHA  399 (545)
T ss_pred             cCcccccceeccHHHeeecccc
Confidence            1246778888887777776643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.57  E-value=7.3e-13  Score=120.24  Aligned_cols=310  Identities=12%  Similarity=0.170  Sum_probs=193.7

Q ss_pred             ccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcc---eeeeeeccCCCCCC
Q 004581          221 KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV---RALTVAVPISREDP  297 (744)
Q Consensus       221 ~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~  297 (744)
                      ..-|.++.|...|.+|++|..+|.|.+|.-.....            ..+.....++.|...-   .++.+.        
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------~ey~~~t~fqshepEFDYLkSleie--------   84 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------GEYNFQTEFQSHEPEFDYLKSLEIE--------   84 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccc------------cceeeeeeeeccCcccchhhhhhhh--------
Confidence            45688999999999999999999999997654331            1223334444554321   111110        


Q ss_pred             CCcccccccCCCCCCcccccccccc-CCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceee---cCC
Q 004581          298 LPEDKVKRSRGREKPIDFSYHKWAH-LGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIF---SHT  373 (744)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~  373 (744)
                         .++            +...|.. .+...++..+.|.+|++|.+.........  ...+...+...+.++..   .+.
T Consensus        85 ---EKi------------nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~--~~~~~~~~~~~~~~lr~p~~~~~  147 (433)
T KOG1354|consen   85 ---EKI------------NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEG--YNLPEEGPPGTITSLRLPVEGRH  147 (433)
T ss_pred             ---hhh------------hhceecCCCCccEEEEecCCcceeeeeeecccccccc--ccccccCCCCccceeeceeeccc
Confidence               000            0011211 13346777788999999998764332211  01111111112211110   010


Q ss_pred             eEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCC
Q 004581          374 SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ  453 (744)
Q Consensus       374 ~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~  453 (744)
                      ...+.                            ..+.......|...|.+++++.|++.+.+++|-.|.+|++...++..
T Consensus       148 ~~~ve----------------------------a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sF  199 (433)
T KOG1354|consen  148 DLEVE----------------------------ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSF  199 (433)
T ss_pred             cceee----------------------------eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCce
Confidence            00000                            11233444677889999999999999999999999999999877888


Q ss_pred             ceEEeeeccCCcccccccEEEEeeC-CCEEEEEeCCCcEEEEEccCCcee----eeeccCccc-ccccCCCCCCceEEEE
Q 004581          454 GEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSSELL----HTFTPCREE-HDREIQPSEPPITKMF  527 (744)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~-~~~~~~~~~~~i~~l~  527 (744)
                      .+.+++...+.....-|++..|+|. .+.++..+..|+|++-|+....+.    +.|..+... ...-...--..|..+.
T Consensus       200 nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvK  279 (433)
T KOG1354|consen  200 NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVK  279 (433)
T ss_pred             eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceE
Confidence            8877777666665667899999995 567777788999999999743221    112110000 0000011235688999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEECC-CcceEEEEecCC-----------CCce---eEEeecCCCCCeEEEEecCCeEEEEE
Q 004581          528 TSSDGQWLAAVNCFGDVYIFNLE-IQRQHWFISRLE-----------GASV---TAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       528 ~spdg~~las~~~dg~i~iwd~~-~~~~~~~~~~~~-----------~~~v---~~l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                      ||++|+|+++-+.- +|++||++ ..++..+.+.+.           ...|   ..++|+- ++.++++|+..+.+++|+
T Consensus       280 Fs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  280 FSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence            99999999997654 69999995 334444443321           1222   3578998 888999999999999999


Q ss_pred             cCCCc
Q 004581          593 VEAKQ  597 (744)
Q Consensus       593 ~~~~~  597 (744)
                      +..|.
T Consensus       358 ~~~gs  362 (433)
T KOG1354|consen  358 LARGS  362 (433)
T ss_pred             CCCCc
Confidence            87774

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.1e-11  Score=111.86  Aligned_cols=177  Identities=16%  Similarity=0.214  Sum_probs=136.3

Q ss_pred             CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581           15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV   94 (744)
Q Consensus        15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (744)
                      +.|.|||=...+++.++. ...+|.+|.+.++-                                               
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r-----------------------------------------------  106 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR-----------------------------------------------  106 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCe-----------------------------------------------
Confidence            589999977778888887 57899999999964                                               


Q ss_pred             ccCCeEEEEecCCeEEEEEecCC-CceeEeecccCccCcEEEEEEecCCCEEEEEe-CCCeEEEEEccCCce--EEEEEe
Q 004581           95 VEDRRVALACDDGCVRIYRITDS-DELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKLGYE--IYRITV  170 (744)
Q Consensus        95 ~~~~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~dg~i~vwd~~~~~~--~~~~~~  170 (744)
                           |++.-+ +.|+||...+. +.+....+.... ....+++=+.+..+||.=+ .-|.|+|-|+...+.  ...+. 
T Consensus       107 -----iVvvl~-~~I~VytF~~n~k~l~~~et~~NP-kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-  178 (346)
T KOG2111|consen  107 -----IVVVLE-NKIYVYTFPDNPKLLHVIETRSNP-KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-  178 (346)
T ss_pred             -----EEEEec-CeEEEEEcCCChhheeeeecccCC-CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-
Confidence                 555554 78999999733 333222222222 2344444444555666543 468999999976555  34454 


Q ss_pred             cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCC-EEEEeCCCcceEEEeec--cccceeEEEEcCCCCEEEeecCCCeEE
Q 004581          171 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS-VQFWDSRHGTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                             .|.+.|.|++.+-+| .+++++..|+ |||||..+|+.++.++.  ..+.|.|++|||+..+|++++..|++.
T Consensus       179 -------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH  251 (346)
T KOG2111|consen  179 -------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH  251 (346)
T ss_pred             -------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence                   699999999999999 8999999998 89999999999999874  356899999999999999999999999


Q ss_pred             EEEcccCc
Q 004581          247 LYKASCES  254 (744)
Q Consensus       247 iw~~~~~~  254 (744)
                      +|.+....
T Consensus       252 iF~l~~~~  259 (346)
T KOG2111|consen  252 IFSLRDTE  259 (346)
T ss_pred             EEEeecCC
Confidence            99998754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.56  E-value=1.2e-11  Score=118.73  Aligned_cols=328  Identities=14%  Similarity=0.145  Sum_probs=202.1

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC---
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS---  199 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~---  199 (744)
                      ..+..-.-++..++|||.|.+|++.... .|.+|.-..+..+.++.          ...|..+.|+|.+ +|.+=..   
T Consensus        26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~----------~~~V~~~~fSP~~kYL~tw~~~pi   94 (561)
T COG5354          26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR----------HPDVKYLDFSPNEKYLVTWSREPI   94 (561)
T ss_pred             ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee----------cCCceecccCcccceeeeeccCCc
Confidence            4444466789999999999999987765 69999987777666664          2468889999999 6666443   


Q ss_pred             ------------CCCEEEEeCCCcceEEEeeccccc--ee-EEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcc
Q 004581          200 ------------TGSVQFWDSRHGTLLQAHSFHKGD--VN-ALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS  264 (744)
Q Consensus       200 ------------dg~i~vwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  264 (744)
                                  ++.+.+||+.+|..+..+.+-..+  .. -+.|+.+..+++-. ....+.++++ +...         
T Consensus        95 ~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~---------  163 (561)
T COG5354          95 IEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNI---------  163 (561)
T ss_pred             cChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCcc---------
Confidence                        335999999999999998876655  44 67888888776654 3456899987 3331         


Q ss_pred             cccceEEEEeeeeec---cCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe
Q 004581          265 EVIKKWIYVGSVRAH---THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC  341 (744)
Q Consensus       265 ~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~  341 (744)
                               .....+   ...|....++         |.+                               ....+..|-
T Consensus       164 ---------~~~p~~~lr~~gi~dFsis---------P~~-------------------------------n~~~la~~t  194 (561)
T COG5354         164 ---------EEHPFKNLRPVGILDFSIS---------PEG-------------------------------NHDELAYWT  194 (561)
T ss_pred             ---------ccCchhhccccceeeEEec---------CCC-------------------------------CCceEEEEc
Confidence                     111111   1223334443         221                               111233333


Q ss_pred             cCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCe
Q 004581          342 ANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKI  421 (744)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  421 (744)
                      .+.....                                 ..+.+|.+....               .+.+.... .-.-
T Consensus       195 PEk~~kp---------------------------------a~~~i~sIp~~s---------------~l~tk~lf-k~~~  225 (561)
T COG5354         195 PEKLNKP---------------------------------AMVRILSIPKNS---------------VLVTKNLF-KVSG  225 (561)
T ss_pred             cccCCCC---------------------------------cEEEEEEccCCC---------------eeeeeeeE-eecc
Confidence            3221110                                 122222222111               00000000 0111


Q ss_pred             EEEEEcCCCCEEEEE------------cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe--C
Q 004581          422 ICSTISNSGMLFAYS------------DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG--H  487 (744)
Q Consensus       422 ~~~~~s~~g~~la~~------------~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~--~  487 (744)
                      ..+-|.+.|++|.+-            .+..++|+++..  ..+.+      .. ...++|...+|.|+++.+++.+  .
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V------~~-~~~~pVhdf~W~p~S~~F~vi~g~~  296 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPV------EK-DLKDPVHDFTWEPLSSRFAVISGYM  296 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccce------ec-cccccceeeeecccCCceeEEeccc
Confidence            234455666554431            123455666553  12221      11 2245899999999999887665  5


Q ss_pred             CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceEE-EEecCCC
Q 004581          488 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHW-FISRLEG  563 (744)
Q Consensus       488 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~-~~~~~~~  563 (744)
                      +..+.++|+... +...+.             ...-..+.|||.++|++.++-|   |.|.+||..+.-... .+..   
T Consensus       297 pa~~s~~~lr~N-l~~~~P-------------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---  359 (561)
T COG5354         297 PASVSVFDLRGN-LRFYFP-------------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---  359 (561)
T ss_pred             ccceeecccccc-eEEecC-------------CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec---
Confidence            788999998744 554444             3445678899999999997754   689999988765544 3332   


Q ss_pred             CceeEEeecCCCCCeEEEEe------cCCeEEEEEcCCCcc
Q 004581          564 ASVTAAGFPPQNNNVLIITT------SSNQVYVFDVEAKQL  598 (744)
Q Consensus       564 ~~v~~l~~sp~~~~~l~~~~------~d~~v~vwd~~~~~~  598 (744)
                      ..-+-+.|+| |++++.++.      .|+.|.|||+.+.+.
T Consensus       360 ~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         360 LNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             CCceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh
Confidence            3456678999 999988874      378999999987754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=7.6e-14  Score=134.00  Aligned_cols=168  Identities=18%  Similarity=0.187  Sum_probs=127.6

Q ss_pred             eeEEecCCCeEEEEEccCCceeEEee----ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581            7 RLFSSSIDGSVSEWDLYDLKQKIVLQ----SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN   82 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~~~~~~~~----~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (744)
                      -|++|-.-|.|.+.|....+..+.+.    -....|+|+.|-|-++.                                 
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~---------------------------------  233 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS---------------------------------  233 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc---------------------------------
Confidence            37777777888888876633222221    12478999999997753                                 


Q ss_pred             CCCcccccccccccCCeEEEEecCCeEEEEEecC--------------CCceeE-----------eecccCccCcEEEEE
Q 004581           83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITD--------------SDELIY-----------HRSLPRVSGRVLSVT  137 (744)
Q Consensus        83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~--------------~~~~~~-----------~~~~~~h~~~V~~~~  137 (744)
                                      .+.++-.+|.+++||..-              +..+..           ...+.--++.|...+
T Consensus       234 ----------------~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  234 ----------------LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             ----------------eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence                            455555667777775431              001100           011112245789999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEE
Q 004581          138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA  216 (744)
Q Consensus       138 ~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~  216 (744)
                      |+|||++||+.+.||.+||+|..+.+.+..++        .--+...|++|+||| +|++|++|--|.||.+..++.+..
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHHHHH--------hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            99999999999999999999999988877776        456778999999999 999999999999999999999999


Q ss_pred             eeccccceeEEEEcC
Q 004581          217 HSFHKGDVNALAAAP  231 (744)
Q Consensus       217 ~~~h~~~v~~l~~~~  231 (744)
                      -++|...|..++|.|
T Consensus       370 GqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  370 GQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccccccceeeEeecc
Confidence            999999999999987

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=9.9e-12  Score=123.67  Aligned_cols=468  Identities=14%  Similarity=0.133  Sum_probs=264.4

Q ss_pred             CCCeeEEecCCCeEEEEEccCC---------------ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDL---------------KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK   68 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~---------------~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~   68 (744)
                      ..+++|+||.||.+++.-+.+.               ..-+++.||.+.|.-+.|+.+.                     
T Consensus        25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~---------------------   83 (1189)
T KOG2041|consen   25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN---------------------   83 (1189)
T ss_pred             cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc---------------------
Confidence            4578999999999999977542               2335688999999999999988                     


Q ss_pred             CCCCCCCcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE
Q 004581           69 SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG  148 (744)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~  148 (744)
                                                   +.|-+...+|.|.+|=+-.+.-.. ...-......|.+++|+.||+.+...
T Consensus        84 -----------------------------QKLTtSDt~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsWn~dG~kIcIv  133 (1189)
T KOG2041|consen   84 -----------------------------QKLTTSDTSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSWNLDGTKICIV  133 (1189)
T ss_pred             -----------------------------ccccccCCCceEEEEeeecccHHH-HHhhCcCccEEEEEEEcCCCcEEEEE
Confidence                                         477788899999999987554321 12334567789999999999999999


Q ss_pred             eCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCc-------ceEEE----
Q 004581          149 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-------TLLQA----  216 (744)
Q Consensus       149 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~-------~~~~~----  216 (744)
                      -.||.|.|=.++..+ +..-..        .......+.|++|. .++.+-..|.+.++|.+..       .+.-.    
T Consensus       134 YeDGavIVGsvdGNR-IwgKeL--------kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~  204 (1189)
T KOG2041|consen  134 YEDGAVIVGSVDGNR-IWGKEL--------KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI  204 (1189)
T ss_pred             EccCCEEEEeeccce-ecchhc--------chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence            999998887764332 221110        11223356677776 5555666677777765421       00000    


Q ss_pred             eec-------------------------------------------------cccceeEEEEcCCCCEEEeecCC-----
Q 004581          217 HSF-------------------------------------------------HKGDVNALAAAPSHNRVFSTGSD-----  242 (744)
Q Consensus       217 ~~~-------------------------------------------------h~~~v~~l~~~~~~~~l~~~~~d-----  242 (744)
                      +..                                                 ..-.|..+.|+++|..|+++|.|     
T Consensus       205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~  284 (1189)
T KOG2041|consen  205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADE  284 (1189)
T ss_pred             ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccC
Confidence            000                                                 01124455566666666665543     


Q ss_pred             ----CeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccc--
Q 004581          243 ----GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFS--  316 (744)
Q Consensus       243 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  316 (744)
                          +.|.+|..-...                  ++.+......|++++|.         ..|-...+. -...+-|.  
T Consensus       285 ~~d~n~v~Fysp~G~i------------------~gtlkvpg~~It~lsWE---------g~gLriA~A-vdsfiyfanI  336 (1189)
T KOG2041|consen  285 PTDSNKVHFYSPYGHI------------------VGTLKVPGSCITGLSWE---------GTGLRIAIA-VDSFIYFANI  336 (1189)
T ss_pred             ccccceEEEeccchhh------------------eEEEecCCceeeeeEEc---------CCceEEEEE-ecceEEEEee
Confidence                123333322221                  45556666777777773         111100000 00000000  


Q ss_pred             --ccccccCCCcEEEE-ecCC---CeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEee
Q 004581          317 --YHKWAHLGVPMLIS-AGDD---TKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR  390 (744)
Q Consensus       317 --~~~w~~~~~~~l~s-~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~  390 (744)
                        --.|..-....+.. ...+   -.|.+||..+..++-..          .....++++..+..+|+.....-.+-...
T Consensus       337 RP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s  406 (1189)
T KOG2041|consen  337 RPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDDGVIPEYS  406 (1189)
T ss_pred             cccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccccCCCcchh
Confidence              00121111111111 1111   24666776654332111          12233555555555555432111111111


Q ss_pred             ccCCcccCCCCCCCCCcceEEEEE------ecCCC---CeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCC--------
Q 004581          391 LENNVESRSSSGGHASTSLLVQVK------SKASR---KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ--------  453 (744)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~--------  453 (744)
                      +-+..            ..++.+.      ..-..   .|.-.-..-++.+++.++...+.+|....+....        
T Consensus       407 ~le~~------------~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~r  474 (1189)
T KOG2041|consen  407 TLENR------------SRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIR  474 (1189)
T ss_pred             hhhcc------------cceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhc
Confidence            00000            0011111      00011   1222222335677777888888888876421110        


Q ss_pred             ----------------ceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCC
Q 004581          454 ----------------GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQ  517 (744)
Q Consensus       454 ----------------~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~  517 (744)
                                      ...+.....+.+...+|++++.|  .++|.++-..|.|+-|.+.+.-+......          
T Consensus       475 kegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~----------  542 (1189)
T KOG2041|consen  475 KEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPV----------  542 (1189)
T ss_pred             ccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecccc----------
Confidence                            11111123344455578888874  68899999999999999988877766663          


Q ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECC---CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcC
Q 004581          518 PSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE---IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       518 ~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~  594 (744)
                        ...|.+++.+-+...+|..+.-|.+-+.|++   ++.....+.......|+++.|.. |+..|+.--.-..++||+-.
T Consensus       543 --n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~-dNp~llAlmeKtrmyifrgn  619 (1189)
T KOG2041|consen  543 --NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQ-DNPNLLALMEKTRMYIFRGN  619 (1189)
T ss_pred             --CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhcc-CCchHHhhhhhceEEEecCc
Confidence              6779999999999999999999999999886   34444434444557899999998 55544444445577787655


Q ss_pred             CC
Q 004581          595 AK  596 (744)
Q Consensus       595 ~~  596 (744)
                      .-
T Consensus       620 dp  621 (1189)
T KOG2041|consen  620 DP  621 (1189)
T ss_pred             Cc
Confidence            43

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=2e-14  Score=135.38  Aligned_cols=186  Identities=18%  Similarity=0.218  Sum_probs=160.1

Q ss_pred             CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      .|.+|+.++.-|.|-.+|+.++++...+.. .+.|..+.|-.+.+                                   
T Consensus       140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq-----------------------------------  183 (545)
T KOG1272|consen  140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ-----------------------------------  183 (545)
T ss_pred             CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH-----------------------------------
Confidence            466799999999999999999999888874 67899999998884                                   


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                                     ++|++- ...++|||-. |.++   +.++.| ..|..+.|-|.--+|++++..|.++--|+.+|+
T Consensus       184 ---------------~~AVAQ-K~y~yvYD~~-GtEl---HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk  242 (545)
T KOG1272|consen  184 ---------------FFAVAQ-KKYVYVYDNN-GTEL---HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK  242 (545)
T ss_pred             ---------------HHHhhh-hceEEEecCC-CcEE---eehhhc-CchhhhcccchhheeeecccCCceEEEeechhh
Confidence                           444443 3689999975 6666   555544 479999999998889999999999999999999


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD  242 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d  242 (744)
                      .+..+..        ..+.+..++-+|-+ .+-.|...|+|.+|.....+++..+-.|.++|.++++.++|++++|+|.|
T Consensus       243 lVa~~~t--------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D  314 (545)
T KOG1272|consen  243 LVASIRT--------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD  314 (545)
T ss_pred             hhHHHHc--------cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence            9998874        55667777888877 78889999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcccCc
Q 004581          243 GQVILYKASCES  254 (744)
Q Consensus       243 g~i~iw~~~~~~  254 (744)
                      ..++|||++.-.
T Consensus       315 r~~kIWDlR~~~  326 (545)
T KOG1272|consen  315 RKVKIWDLRNFY  326 (545)
T ss_pred             cceeEeeecccc
Confidence            999999998743

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=2.2e-13  Score=130.94  Aligned_cols=184  Identities=15%  Similarity=0.184  Sum_probs=127.8

Q ss_pred             cCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCC-EEEEEeCCCcEEEEEccC------
Q 004581          427 SNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS-QLIIAGHDRRIYVVDVSS------  498 (744)
Q Consensus       427 s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~-~l~~~~~dg~i~v~d~~~------  498 (744)
                      .|.+--+.++ +.+.+.+++... ..-.++++.+..   .....++++.|-|.+. .++++-.+|.+++||..-      
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~---i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~  257 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERL---INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA  257 (636)
T ss_pred             CCCCcceEEeeccCceEEecchh-hHHHHhhhhccc---ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence            3455444444 777777777654 222222222111   1124899999988554 445556699999998631      


Q ss_pred             --------CceeeeeccCcc---cccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCcee
Q 004581          499 --------SELLHTFTPCRE---EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT  567 (744)
Q Consensus       499 --------~~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  567 (744)
                              +...........   +.-....-..+.|..++|||||++||+.+.||.++|||..+.+++..++.+. +...
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-GGLL  336 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-GGLL  336 (636)
T ss_pred             CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-cceE
Confidence                    111111111000   0001111235678999999999999999999999999999999887776655 5899


Q ss_pred             EEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581          568 AAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP  627 (744)
Q Consensus       568 ~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp  627 (744)
                      |++||| ||+++++|++|.-|.||.+..+++           ..+-++|+.+|..++|+|
T Consensus       337 CvcWSP-DGKyIvtGGEDDLVtVwSf~erRV-----------VARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  337 CVCWSP-DGKYIVTGGEDDLVTVWSFEERRV-----------VARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEEcC-CccEEEecCCcceEEEEEeccceE-----------EEeccccccceeeEeecc
Confidence            999999 999999999999999999999975           445688999999999996

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.53  E-value=2.8e-12  Score=135.39  Aligned_cols=277  Identities=13%  Similarity=0.169  Sum_probs=180.5

Q ss_pred             EeCCCcceEEEeeccccceeEEEEcCCC-CEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcce
Q 004581          206 WDSRHGTLLQAHSFHKGDVNALAAAPSH-NRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR  284 (744)
Q Consensus       206 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  284 (744)
                      |+.+ |..+..+..|...|..++.+++. .++++|+.||+|++|+...-...          ........+.......+.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----------~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----------GGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----------cceeeeeEEEeccCCceE
Confidence            7766 89999999999999999998765 99999999999999998764310          011112222222345566


Q ss_pred             eeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCcccc
Q 004581          285 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL  364 (744)
Q Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (744)
                      ++...                                 ++++.++.++.||.|.+.++.......               
T Consensus      1103 ~vt~~---------------------------------~~~~~~Av~t~DG~v~~~~id~~~~~~--------------- 1134 (1431)
T KOG1240|consen 1103 KVTMC---------------------------------GNGDQFAVSTKDGSVRVLRIDHYNVSK--------------- 1134 (1431)
T ss_pred             EEEec---------------------------------cCCCeEEEEcCCCeEEEEEcccccccc---------------
Confidence            66553                                 234489999999999999887521100               


Q ss_pred             ccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCC-eEEEEEcC-CCC-EEEE-EcCCc
Q 004581          365 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK-IICSTISN-SGM-LFAY-SDHVK  440 (744)
Q Consensus       365 v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~-~g~-~la~-~~~~~  440 (744)
                                 +.+.   .+++                          ......+. +..-++.. .+. .|++ ...+.
T Consensus      1135 -----------~~~~---~~ri--------------------------~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1135 -----------RVAT---QVRI--------------------------PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred             -----------ceee---eeec--------------------------ccccCCCceEEeecccccccceeEEEEEeccc
Confidence                       0000   0000                          00000111 11222222 122 3444 47778


Q ss_pred             eEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCC
Q 004581          441 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE  520 (744)
Q Consensus       441 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  520 (744)
                      +..|++..   ...+|.++..   ...+.|++++.+|.++++++|+..|.+.+||+.-+.++..+..+          +.
T Consensus      1175 iv~~D~r~---~~~~w~lk~~---~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P----------~~ 1238 (1431)
T KOG1240|consen 1175 IVSWDTRM---RHDAWRLKNQ---LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP----------AR 1238 (1431)
T ss_pred             eEEecchh---hhhHHhhhcC---ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc----------cc
Confidence            88898876   4445544432   23348999999999999999999999999999888787777643          56


Q ss_pred             CceEEEEECCCC---CEEEEEe--CCCcEEEEECCCcceEEEEecCCC------------------CceeEEeecCCCCC
Q 004581          521 PPITKMFTSSDG---QWLAAVN--CFGDVYIFNLEIQRQHWFISRLEG------------------ASVTAAGFPPQNNN  577 (744)
Q Consensus       521 ~~i~~l~~spdg---~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~------------------~~v~~l~~sp~~~~  577 (744)
                      .+|..++..|-.   .+.++++  ..+.|.+|++.++.....+.....                  -......+.. .+.
T Consensus      1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~ 1317 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNG 1317 (1431)
T ss_pred             CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCc
Confidence            788888876643   3555444  577899999999977666544311                  0112233333 567


Q ss_pred             eEEEEecCCeEEEEEcCCCcc
Q 004581          578 VLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       578 ~l~~~~~d~~v~vwd~~~~~~  598 (744)
                      .+.+++.|..|+.||...-+.
T Consensus      1318 ~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eeeecCCccceeeccCCCccc
Confidence            899999999999999987753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=4.4e-12  Score=130.98  Aligned_cols=174  Identities=15%  Similarity=0.105  Sum_probs=116.8

Q ss_pred             eEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccc
Q 004581           16 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV   95 (744)
Q Consensus        16 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (744)
                      .|.+||...... +.+..+...+.+.+|||||+.                                              
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~----------------------------------------------  212 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSK----------------------------------------------  212 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCE----------------------------------------------
Confidence            799999875544 445556788999999999954                                              


Q ss_pred             cCCeEEEE---ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCC--eEEEEEccCCceEEEEE
Q 004581           96 EDRRVALA---CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDG--YIRSWDAKLGYEIYRIT  169 (744)
Q Consensus        96 ~~~~la~~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg--~i~vwd~~~~~~~~~~~  169 (744)
                          ||..   ..+..|.+|++.+++. .....+.+   .+.+++|||||+.|+.. +.+|  .|.+||+++++... +.
T Consensus       213 ----la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt  283 (429)
T PRK03629        213 ----LAYVTFESGRSALVIQTLANGAV-RQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT  283 (429)
T ss_pred             ----EEEEEecCCCcEEEEEECCCCCe-EEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc
Confidence                4433   2345799999976543 22233433   34568999999988865 3344  59999998876543 33


Q ss_pred             ecCCCCCCCCceeEEEEEEecCC-eEEEEcC-CCC--EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC---
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TGS--VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---  242 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d---  242 (744)
                              .+...+....|+||| .|+..+. ++.  |.++|+.+++. ..+..+.....+.+|+|||++|+..+.+   
T Consensus       284 --------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        284 --------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             --------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence                    233456788999999 5655544 444  44446765543 3444445556788999999998876543   


Q ss_pred             CeEEEEEcccCc
Q 004581          243 GQVILYKASCES  254 (744)
Q Consensus       243 g~i~iw~~~~~~  254 (744)
                      ..|.+||+.++.
T Consensus       355 ~~I~~~dl~~g~  366 (429)
T PRK03629        355 QHIAKQDLATGG  366 (429)
T ss_pred             ceEEEEECCCCC
Confidence            357888887654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=6.2e-11  Score=123.82  Aligned_cols=144  Identities=19%  Similarity=0.258  Sum_probs=122.9

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      .-++++|+.-+.|.+|++..-+....+.+|.+.|.++.++-||                                     
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-------------------------------------  187 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-------------------------------------  187 (967)
T ss_pred             EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC-------------------------------------
Confidence            3458899999999999998444444689999999999999999                                     


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE  164 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~  164 (744)
                                   +++|+.++|.++++|++++.+.+.  ...-+|..+|..++|+|+  .++|++.|.+.++|+. .+..
T Consensus       188 -------------~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~  249 (967)
T KOG0974|consen  188 -------------RYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQ  249 (967)
T ss_pred             -------------cEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccce
Confidence                         699999999999999999877764  466799999999999998  8999999999999976 4666


Q ss_pred             EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC
Q 004581          165 IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH  210 (744)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~  210 (744)
                      +..+..       .....++.++..++. .+++++.|+.+++||+..
T Consensus       250 l~~y~~-------h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  250 LEVYDE-------HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ehhhhh-------hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            666653       344679999999888 899999999999999863

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.50  E-value=4.7e-09  Score=116.70  Aligned_cols=396  Identities=14%  Similarity=0.113  Sum_probs=224.2

Q ss_pred             ccCcEEEEEEecCCCEEEEEeC------CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCe-EEEEcC--
Q 004581          129 VSGRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT-LVSADS--  199 (744)
Q Consensus       129 h~~~V~~~~~s~dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~s~~~--  199 (744)
                      +...-..++|-.||.++|+.+.      -+.||||+-+ |.....-.        .-.+.-.+++|.|.|. |++.-.  
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE--------~v~gLe~~l~WrPsG~lIA~~q~~~  278 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE--------PVDGLEGALSWRPSGNLIASSQRLP  278 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc--------cCCCccCCccCCCCCCEEEEEEEcC
Confidence            4445678999999999998764      2579999964 65443333        2334455789999994 444433  


Q ss_pred             -CCCEEEEeCCCcceEEEee----ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEe
Q 004581          200 -TGSVQFWDSRHGTLLQAHS----FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVG  274 (744)
Q Consensus       200 -dg~i~vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (744)
                       ...|.+|.-+ |-....|.    .....|..|+|++|+..|+....|. |.+|...+-               .|-..+
T Consensus       279 ~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY---------------HWYLKq  341 (928)
T PF04762_consen  279 DRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY---------------HWYLKQ  341 (928)
T ss_pred             CCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC---------------EEEEEE
Confidence             3457777744 43333332    3456899999999999999876555 999998774               465555


Q ss_pred             eeeecc-CcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCccc
Q 004581          275 SVRAHT-HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI  353 (744)
Q Consensus       275 ~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~  353 (744)
                      .+.... ..+..+.|.                                ......|.....++.+..++..-......   
T Consensus       342 ei~~~~~~~~~~~~Wd--------------------------------pe~p~~L~v~t~~g~~~~~~~~~~v~~s~---  386 (928)
T PF04762_consen  342 EIRFSSSESVNFVKWD--------------------------------PEKPLRLHVLTSNGQYEIYDFAWDVSRSP---  386 (928)
T ss_pred             EEEccCCCCCCceEEC--------------------------------CCCCCEEEEEecCCcEEEEEEEEEEEecC---
Confidence            555432 233446664                                22223566666666665554432110000   


Q ss_pred             CCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEE
Q 004581          354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF  433 (744)
Q Consensus       354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  433 (744)
                                   ...-...+...+..+..+.+-.+....-.            ..+......-...|.+++|++++..+
T Consensus       387 -------------~~~~~D~g~vaVIDG~~lllTpf~~a~VP------------PPMs~~~l~~~~~v~~vaf~~~~~~~  441 (928)
T PF04762_consen  387 -------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVP------------PPMSSYELELPSPVNDVAFSPSNSRF  441 (928)
T ss_pred             -------------CCCccCceEEEEEeCCeEEEecccccCCC------------chHhceEEcCCCCcEEEEEeCCCCeE
Confidence                         00001123344444556666555544322            13333333344889999999999755


Q ss_pred             EE-EcCCceEEEEeecCCCCC----c-eEEeeec-----cCCcccccccEEEEeeCCCEEEEEeCC---CcEEEEEccCC
Q 004581          434 AY-SDHVKPSLFELKKGKVGQ----G-EWIINKR-----QLPRKLQFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSS  499 (744)
Q Consensus       434 a~-~~~~~v~l~~~~~~~~~~----~-~~~~~~~-----~~~~~~~~v~~i~~spd~~~l~~~~~d---g~i~v~d~~~~  499 (744)
                      |+ ..++.+.+|.........    . ...+...     ........+..++|..+...++....+   ..+.++++...
T Consensus       442 avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  442 AVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             EEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence            55 799999999976522110    0 0001000     111122367888888777777666554   67888887433


Q ss_pred             c---eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEE-EEecCCCCceeEEeecCCC
Q 004581          500 E---LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW-FISRLEGASVTAAGFPPQN  575 (744)
Q Consensus       500 ~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~l~~sp~~  575 (744)
                      +   .+.....           ..+.+..+...++...++.-..+|.+..++........ .++..  .+-..+.... +
T Consensus       522 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~--c~~~~~~~~~-~  587 (928)
T PF04762_consen  522 ENSASVESSTE-----------VDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP--CPWMEVCQIN-G  587 (928)
T ss_pred             CCceeEEEEec-----------cCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCC--CcEEEEEEEC-C
Confidence            2   2222222           35566667667766656777789999877766554322 23221  1222233332 2


Q ss_pred             CC--eEEEE-ecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCC
Q 004581          576 NN--VLIIT-TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFG  648 (744)
Q Consensus       576 ~~--~l~~~-~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~  648 (744)
                      ..  .++.| +..|.+++   ++..+                  ...+++..+.++   -.++......++++++.
T Consensus       588 ~~~~~~~~GLs~~~~Ly~---n~~~l------------------a~~~tSF~v~~~---~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  588 SEDKRVLFGLSSNGRLYA---NSRLL------------------ASNCTSFAVTDS---FLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             ccceeEEEEECCCCEEEE---CCEEE------------------ecCCceEEEEcC---EEEEEecCceEEEEECc
Confidence            22  23333 44455553   33321                  146677777543   44444555557888886

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.6e-11  Score=119.31  Aligned_cols=197  Identities=12%  Similarity=0.108  Sum_probs=134.7

Q ss_pred             CCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccC
Q 004581          429 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPC  508 (744)
Q Consensus       429 ~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  508 (744)
                      ...++.+|+...|+-+++..   +.-+     ..+......++++..++...+|++|+.+|.|..||..+...+.++...
T Consensus       145 scDly~~gsg~evYRlNLEq---GrfL-----~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  145 SCDLYLVGSGSEVYRLNLEQ---GRFL-----NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             CccEEEeecCcceEEEEccc---cccc-----cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence            34566666666666666654   3332     334444458999999999999999999999999999887777776642


Q ss_pred             cccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeE
Q 004581          509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQV  588 (744)
Q Consensus       509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v  588 (744)
                      .......-......|+++.|+.||-.+++|..+|.|.|||+.+.++...-......+|..+.|.+.+++--++......+
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~  296 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRIL  296 (703)
T ss_pred             cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHh
Confidence            21111111112345999999999999999999999999999998886655444447899999988333333334445689


Q ss_pred             EEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEe
Q 004581          589 YVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVID  646 (744)
Q Consensus       589 ~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~  646 (744)
                      +|||-.+|+.            .........+..++|-|+ .+..++...+.-|..+-
T Consensus       297 kiWd~~~Gk~------------~asiEpt~~lND~C~~p~-sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  297 KIWDECTGKP------------MASIEPTSDLNDFCFVPG-SGMFFTANESSKMHTYY  341 (703)
T ss_pred             hhcccccCCc------------eeeccccCCcCceeeecC-CceEEEecCCCcceeEE
Confidence            9999999973            223334466899999997 34444444444444433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=6.7e-12  Score=130.44  Aligned_cols=175  Identities=14%  Similarity=0.101  Sum_probs=119.1

Q ss_pred             CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581           15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV   94 (744)
Q Consensus        15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (744)
                      ..|.+||... ...+.+..+...+.+.+|+|||+                                              
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~----------------------------------------------  216 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGK----------------------------------------------  216 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCC----------------------------------------------
Confidence            4699999854 44555666788899999999995                                              


Q ss_pred             ccCCeEEEEe---cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEE-EEeCCC--eEEEEEccCCceEEEE
Q 004581           95 VEDRRVALAC---DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSDG--YIRSWDAKLGYEIYRI  168 (744)
Q Consensus        95 ~~~~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~-t~~~dg--~i~vwd~~~~~~~~~~  168 (744)
                          .||..+   .+..|++||+.++..    ..+..+.+...+++|+|||+.|+ +.+.+|  .|.+||+.+++.. .+
T Consensus       217 ----~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l  287 (433)
T PRK04922        217 ----KLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RL  287 (433)
T ss_pred             ----EEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-EC
Confidence                555444   235799999976554    22333444556889999999876 445555  6999999887653 33


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCCC--EEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STGS--VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-  243 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-  243 (744)
                      .        .+.......+|+||| .|+..+ .+|.  |.++|+.+++. ..+..+.......+|+|||++|+..+.++ 
T Consensus       288 t--------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~  358 (433)
T PRK04922        288 T--------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGG  358 (433)
T ss_pred             c--------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCC
Confidence            3        233445678999999 565544 4554  66667776654 33333344455789999999998765432 


Q ss_pred             --eEEEEEcccCc
Q 004581          244 --QVILYKASCES  254 (744)
Q Consensus       244 --~i~iw~~~~~~  254 (744)
                        .|.+|++.++.
T Consensus       359 ~~~I~v~d~~~g~  371 (433)
T PRK04922        359 QYRIAVMDLSTGS  371 (433)
T ss_pred             ceeEEEEECCCCC
Confidence              68899987654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=4.2e-12  Score=115.39  Aligned_cols=288  Identities=13%  Similarity=0.118  Sum_probs=172.8

Q ss_pred             CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcc-----eEEEeeccc------------cceeEEEEcCCC--CEEEe
Q 004581          179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-----LLQAHSFHK------------GDVNALAAAPSH--NRVFS  238 (744)
Q Consensus       179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~--~~l~~  238 (744)
                      ....|.++.|...| +|++|+.+|.|.++.-....     ....++.|.            ..|..+.|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            55678899999999 99999999999998654321     233444454            358889998876  45677


Q ss_pred             ecCCCeEEEEEcccCcCCCCCCC---------------Ccccccc---eEEEEee-eeeccCcceeeeeeccCCCCCCCC
Q 004581          239 TGSDGQVILYKASCESIGPNDGL---------------SSSEVIK---KWIYVGS-VRAHTHDVRALTVAVPISREDPLP  299 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~  299 (744)
                      .+.|.+|++|.+.........-.               +......   ...+.+. -..|+..|.++.++         .
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N---------s  174 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN---------S  174 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec---------C
Confidence            78999999999876543210000               0000000   0001111 13455666666664         3


Q ss_pred             cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCcc-CCCCCcccCCCCCCCccccccceeecCCeE--E
Q 004581          300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEF-TKFSPHEICPAPQRVPIHLVHNTIFSHTSL--L  376 (744)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~  376 (744)
                      |..                        .++++ .|-.|.+|++.-. +.+......|.........|++..|+|...  +
T Consensus       175 D~E------------------------t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f  229 (433)
T KOG1354|consen  175 DKE------------------------TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF  229 (433)
T ss_pred             ccc------------------------eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence            332                        55554 4778999998742 233333334444444567889999999654  3


Q ss_pred             EEE-eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCce
Q 004581          377 LVQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGE  455 (744)
Q Consensus       377 l~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~  455 (744)
                      +.+ ..++|++-+++...........-.......-..+...--..|..+.|+++|+++.+-+--+|++|++.........
T Consensus       230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t  309 (433)
T KOG1354|consen  230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVET  309 (433)
T ss_pred             EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceE
Confidence            333 3569999999854321100000000000000001111124577899999999999999999999999764444444


Q ss_pred             EEeeecc---CCcccc-----cccEEEEeeCCCEEEEEeCCCcEEEEEccCCc
Q 004581          456 WIINKRQ---LPRKLQ-----FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       456 ~~~~~~~---~~~~~~-----~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~  500 (744)
                      +.+....   +.....     .-..++|+.++.++++|+.....++|++..|.
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            3332210   100000     23357889999999999999999999987664

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=1.4e-11  Score=114.18  Aligned_cols=261  Identities=13%  Similarity=0.143  Sum_probs=179.6

Q ss_pred             EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581          327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS  406 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~  406 (744)
                      .++..+.|..+..+.............. .........|.++.....-.+++..++.+.+|....+...           
T Consensus        71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~-~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~h-----------  138 (412)
T KOG3881|consen   71 VLNARSADDDLPKFVIEEFEISSSLDDA-KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLH-----------  138 (412)
T ss_pred             EeeccccCcccccccccCCccccccccc-cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccc-----------
Confidence            5555556666666665543322221000 0111122345555555444555667889999998865522           


Q ss_pred             cceEEEEEecCCCCeEEEEEcCCCCE-EEEE-cC--CceEEEEeecCCCCCceEEeeeccCCc----ccccccEEEEeeC
Q 004581          407 TSLLVQVKSKASRKIICSTISNSGML-FAYS-DH--VKPSLFELKKGKVGQGEWIINKRQLPR----KLQFAHSMIFSYD  478 (744)
Q Consensus       407 ~~~~~~~~~~~~~~i~~~~~s~~g~~-la~~-~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~spd  478 (744)
                      ...+..+...  ..+..+.-++.-.. +|+| ..  ..+++|++..   ..++|..+...-..    ..-.++.+.|-+.
T Consensus       139 ss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g  213 (412)
T KOG3881|consen  139 SSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVWITDIRFLEG  213 (412)
T ss_pred             cccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeeeeccceecCC
Confidence            1233333333  44555555665555 4444 55  7899999986   47788765432111    1116788999887


Q ss_pred             --CCEEEEEeCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE
Q 004581          479 --SSQLIIAGHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH  555 (744)
Q Consensus       479 --~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~  555 (744)
                        ...||+++.-+.+++||...+ +++.+|.-           ...+|+++..-|+|+++.+|..-|.+..||+.+++..
T Consensus       214 ~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-----------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  214 SPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-----------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             CCCceEEEEecceeEEEecCcccCcceeEecc-----------ccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence              889999999999999999754 57777876           6889999999999999999999999999999999987


Q ss_pred             EEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581          556 WFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       556 ~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd  628 (744)
                      ......-.+.|+++..+| ...+|++++-|..|+|+|+++.++.          .+.|.  ....+.|-+.++
T Consensus       283 g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll----------~kvYv--Ks~lt~il~~~~  342 (412)
T KOG3881|consen  283 GCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLL----------HKVYV--KSRLTFILLRDD  342 (412)
T ss_pred             ccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhh----------hhhhh--hccccEEEecCC
Confidence            763344557999999999 8899999999999999999997652          22232  356777888765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.6e-11  Score=127.75  Aligned_cols=174  Identities=15%  Similarity=0.122  Sum_probs=122.6

Q ss_pred             CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581           15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV   94 (744)
Q Consensus        15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (744)
                      ..|.+||... ...+.+..|...+.+.+|+|||+                                              
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~----------------------------------------------  214 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQ----------------------------------------------  214 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCC----------------------------------------------
Confidence            3889999754 55566777888999999999995                                              


Q ss_pred             ccCCeEEEEe---cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEE-EEeCCCe--EEEEEccCCceEEEE
Q 004581           95 VEDRRVALAC---DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSDGY--IRSWDAKLGYEIYRI  168 (744)
Q Consensus        95 ~~~~~la~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~-t~~~dg~--i~vwd~~~~~~~~~~  168 (744)
                          .||..+   .+..|.+||+.+++.    +.+..+.+.+.+.+|+|||+.|+ +.+.++.  |.+||+.++.. ..+
T Consensus       215 ----~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~L  285 (435)
T PRK05137        215 ----EITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRL  285 (435)
T ss_pred             ----EEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEc
Confidence                444443   357899999986654    34445667788999999999876 4455554  77889887765 344


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC--
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD--  242 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d--  242 (744)
                      .        .+........|+||| .|+..+ .+|  .|.++|+..++. +.+..+...+....|+|||+.|+....+  
T Consensus       286 t--------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~  356 (435)
T PRK05137        286 T--------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGG  356 (435)
T ss_pred             c--------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence            4        344456678999999 565544 333  588888875544 4454445667778999999999876543  


Q ss_pred             -CeEEEEEcccC
Q 004581          243 -GQVILYKASCE  253 (744)
Q Consensus       243 -g~i~iw~~~~~  253 (744)
                       ..|.+|++.++
T Consensus       357 ~~~i~~~d~~~~  368 (435)
T PRK05137        357 QFSIGVMKPDGS  368 (435)
T ss_pred             ceEEEEEECCCC
Confidence             35777776543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=9.7e-12  Score=121.85  Aligned_cols=211  Identities=16%  Similarity=0.090  Sum_probs=157.6

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeecc---CcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSI---DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h---~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      |.++..++|....||.+++||..++++...|...   .+.-.+.+|.     + .+.. .     .+-+..         
T Consensus         1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L-~~~~-s-----~~k~~~---------   59 (541)
T KOG4547|consen    1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----L-SADY-S-----PMKWLS---------   59 (541)
T ss_pred             CCchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----E-Eecc-c-----hHHHHh---------
Confidence            4567788999999999999999998888776532   2444455554     1 0000 0     000000         


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW  157 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw  157 (744)
                               ..-......+-..++-|...|.|.+|++.. .++.....-.+|.+.|.++.++.+-..|.+++.|+.+..|
T Consensus        60 ---------~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~  129 (541)
T KOG4547|consen   60 ---------LEKAKKASLDTSMLVLGTPQGSVLLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYI  129 (541)
T ss_pred             ---------HHHHhhccCCceEEEeecCCccEEEEEecC-CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEE
Confidence                     000001112224888999999999999984 4554434446899999999999999999999999999999


Q ss_pred             EccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCC----
Q 004581          158 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS----  232 (744)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----  232 (744)
                      +..+++.++...        .....+.+++.+||+ .+++++  ++|++||+++++.+.++.+|.++|.++.|..+    
T Consensus       130 ~~~~~~~~~~~~--------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~  199 (541)
T KOG4547|consen  130 LEKEKVIIRIWK--------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI  199 (541)
T ss_pred             ecccceeeeeec--------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence            999999988887        577889999999999 777765  67999999999999999999999999999876    


Q ss_pred             -CCEEEee-cCCCeEEEEEccc
Q 004581          233 -HNRVFST-GSDGQVILYKASC  252 (744)
Q Consensus       233 -~~~l~~~-~~dg~i~iw~~~~  252 (744)
                       |.+++++ ..+.-+.+|-...
T Consensus       200 ~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  200 IGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ccceeeeccccccceeEEEEEc
Confidence             6666654 4466677887665

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=5.3e-12  Score=113.94  Aligned_cols=133  Identities=19%  Similarity=0.327  Sum_probs=97.5

Q ss_pred             CeEEEEEecCCCceeEeeccc-CccCcEEEEEEecCCCEEEEE--eCCCeEEEEEccCCceEEEEEecCCCCCCCCceeE
Q 004581          107 GCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSG--SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI  183 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  183 (744)
                      +...||.+...+...  ..+. ...++|.+++|+|+|+.||+.  ..++.|.+||++ ++.+..+.          ...+
T Consensus        37 ~~~~l~~~~~~~~~~--~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----------~~~~  103 (194)
T PF08662_consen   37 GEFELFYLNEKNIPV--ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----------TQPR  103 (194)
T ss_pred             eeEEEEEEecCCCcc--ceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec----------CCCc
Confidence            345666664332222  2232 234579999999999987654  356799999996 66666653          3456


Q ss_pred             EEEEEecCC-eEEEEcC---CCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC------CCeEEEEEcccC
Q 004581          184 WSLLSLRCG-TLVSADS---TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS------DGQVILYKASCE  253 (744)
Q Consensus       184 ~~~~~~~~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~------dg~i~iw~~~~~  253 (744)
                      ..+.|+|+| +|++++.   .|.|.+||.++.+.+.....  ..++.++|+|||++|++++.      |+.++||+....
T Consensus       104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            789999999 6776653   46799999998888877653  35789999999999998864      788999998764


Q ss_pred             c
Q 004581          254 S  254 (744)
Q Consensus       254 ~  254 (744)
                      .
T Consensus       182 ~  182 (194)
T PF08662_consen  182 L  182 (194)
T ss_pred             E
Confidence            4

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.47  E-value=1.4e-09  Score=103.55  Aligned_cols=148  Identities=12%  Similarity=0.176  Sum_probs=108.0

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEE-cCC-ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCc
Q 004581          413 VKSKASRKIICSTISNSGMLFAYS-DHV-KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRR  490 (744)
Q Consensus       413 ~~~~~~~~i~~~~~s~~g~~la~~-~~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~  490 (744)
                      ++.++...|.-..+.-+++-++.+ .++ .+-+|+...   + ..     .........|.++..+|||++++++.....
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~---~-e~-----kr~e~~lg~I~av~vs~dGK~~vvaNdr~e  424 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG---G-EV-----KRIEKDLGNIEAVKVSPDGKKVVVANDRFE  424 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCC---c-eE-----EEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence            445555667766677666666665 444 888998865   1 11     233445568999999999999999999999


Q ss_pred             EEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC----cEEEEECCCcceEEEEecCCCCce
Q 004581          491 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG----DVYIFNLEIQRQHWFISRLEGASV  566 (744)
Q Consensus       491 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v  566 (744)
                      +.++|+++|.....=+.           ..+-|+.+.|||+++++|.+--+|    .|++||+.+++......  ..+.-
T Consensus       425 l~vididngnv~~idkS-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~D  491 (668)
T COG4946         425 LWVIDIDNGNVRLIDKS-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYD  491 (668)
T ss_pred             EEEEEecCCCeeEeccc-----------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--Ccccc
Confidence            99999999875433332           467899999999999999987766    68999999987643321  12334


Q ss_pred             eEEeecCCCCCeEEEEe
Q 004581          567 TAAGFPPQNNNVLIITT  583 (744)
Q Consensus       567 ~~l~~sp~~~~~l~~~~  583 (744)
                      .+-+|.| |+++|..-+
T Consensus       492 fsPaFD~-d~ryLYfLs  507 (668)
T COG4946         492 FSPAFDP-DGRYLYFLS  507 (668)
T ss_pred             cCcccCC-CCcEEEEEe
Confidence            5568999 999887654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.47  E-value=2.3e-12  Score=117.16  Aligned_cols=233  Identities=19%  Similarity=0.229  Sum_probs=168.4

Q ss_pred             CCeeEEecCCCeEEEEEc-cCCceeEEee-ccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581            5 GGRLFSSSIDGSVSEWDL-YDLKQKIVLQ-SIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN   82 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~-~~~~~~~~~~-~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (744)
                      ..-+++.+.|.++++|=- +.++.-..+. ....+++++.++++.                                   
T Consensus        36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-----------------------------------   80 (404)
T KOG1409|consen   36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-----------------------------------   80 (404)
T ss_pred             CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-----------------------------------
Confidence            455899999999999943 3344333322 235778889998887                                   


Q ss_pred             CCCcccccccccccCCeEEEEecCCeEEEEEec-CCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581           83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL  161 (744)
Q Consensus        83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~  161 (744)
                                     +.|.+|-+.|++.-+.+. .-+.+...+....|..+|..+-|+-.-+++++.+.|..+.---.+.
T Consensus        81 ---------------~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   81 ---------------RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             ---------------eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence                           689999999999999886 2234444477789999999999999999999999997766555555


Q ss_pred             CceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC--CCcceEEEeeccccceeEEEEcCCCCEEEee
Q 004581          162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS--RHGTLLQAHSFHKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~  239 (744)
                      |..+..+......  ......+.        ....|...|.|.+-.+  ..-.++.++.+|.+.+.+++|.+....|++|
T Consensus       146 ~~~lg~Y~~~~~~--t~~~~d~~--------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg  215 (404)
T KOG1409|consen  146 GNRLGGYNFETPA--SALQFDAL--------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSG  215 (404)
T ss_pred             CCcccceEeeccC--CCCceeeE--------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEec
Confidence            5554333211000  00111111        3445555666555433  3356788999999999999999999999999


Q ss_pred             cCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccc
Q 004581          240 GSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHK  319 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (744)
                      ..|..+.+||+.....                ....+.+|.+.|+.+...         +..                  
T Consensus       216 ~~d~~vi~wdigg~~g----------------~~~el~gh~~kV~~l~~~---------~~t------------------  252 (404)
T KOG1409|consen  216 ASDHSVIMWDIGGRKG----------------TAYELQGHNDKVQALSYA---------QHT------------------  252 (404)
T ss_pred             cccCceEEEeccCCcc----------------eeeeeccchhhhhhhhhh---------hhh------------------
Confidence            9999999999987652                245678999999998764         222                  


Q ss_pred             cccCCCcEEEEecCCCeEEEEecCccC
Q 004581          320 WAHLGVPMLISAGDDTKLFAYCANEFT  346 (744)
Q Consensus       320 w~~~~~~~l~s~~~d~~i~~~~~~~~~  346 (744)
                            ..+++++.||.|.+|+++...
T Consensus       253 ------~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  253 ------RQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ------eeeeeccCCCeEEEEecccee
Confidence                  289999999999999998644

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1e-11  Score=128.47  Aligned_cols=175  Identities=17%  Similarity=0.134  Sum_probs=115.5

Q ss_pred             CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581           15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV   94 (744)
Q Consensus        15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (744)
                      ..|.++|. +|...+.+..+...+.+.+|+|||+                                              
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~----------------------------------------------  208 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT----------------------------------------------  208 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCC----------------------------------------------
Confidence            46778886 4555556667788999999999994                                              


Q ss_pred             ccCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEE-EEeCCCeEEEEE--ccCCceEEEE
Q 004581           95 VEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLY-SGSSDGYIRSWD--AKLGYEIYRI  168 (744)
Q Consensus        95 ~~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~-t~~~dg~i~vwd--~~~~~~~~~~  168 (744)
                          .||..+.   ...|.+||+.+++..    .+....+.+.+.+|+|||+.|+ +.+.++...||.  +.++. ...+
T Consensus       209 ----~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l  279 (427)
T PRK02889        209 ----KLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL  279 (427)
T ss_pred             ----EEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC
Confidence                5554443   346999999866542    2333345567899999999887 456677766665  44443 4444


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC-eEEEE-cCCCCEEEEeC--CCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDS--RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-  243 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-  243 (744)
                      .        .+........|+||| .|+.. ..+|...+|.+  .+++ ...+..+.......+|+|||++|+..+.++ 
T Consensus       280 t--------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g  350 (427)
T PRK02889        280 T--------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGG  350 (427)
T ss_pred             C--------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence            3        233445667899999 55544 34566666654  4443 333333333445689999999998766544 


Q ss_pred             --eEEEEEcccCc
Q 004581          244 --QVILYKASCES  254 (744)
Q Consensus       244 --~i~iw~~~~~~  254 (744)
                        .|.+||+.++.
T Consensus       351 ~~~I~v~d~~~g~  363 (427)
T PRK02889        351 AFKLYVQDLATGQ  363 (427)
T ss_pred             cEEEEEEECCCCC
Confidence              69999987755

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.45  E-value=2.6e-09  Score=103.80  Aligned_cols=268  Identities=14%  Similarity=0.066  Sum_probs=169.4

Q ss_pred             CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEc---------CCCCEEEEeCCCcceEEEeecc
Q 004581          152 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSAD---------STGSVQFWDSRHGTLLQAHSFH  220 (744)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~---------~dg~i~vwd~~~~~~~~~~~~h  220 (744)
                      ++|.+.|..+++.+..+..+       .....  + ++||+ .| ++.+         .+..|.+||..+.+.+..+..-
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G-------~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p   96 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGG-------FLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP   96 (352)
T ss_pred             ceEEEEECCCCEEEEEEEcc-------CCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence            79999999999999998853       22222  3 89999 44 4444         5788999999999999888742


Q ss_pred             c-------cceeEEEEcCCCCEEEeec-C-CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeecc
Q 004581          221 K-------GDVNALAAAPSHNRVFSTG-S-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP  291 (744)
Q Consensus       221 ~-------~~v~~l~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  291 (744)
                      .       ..-..++++|||++|++.. . +..|.+.|+.++..                 +....          .   
T Consensus        97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----------------v~ei~----------v---  146 (352)
T TIGR02658        97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----------------VRMMD----------V---  146 (352)
T ss_pred             CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----------------EEEEe----------C---
Confidence            2       2234789999999999776 3 78999999998762                 22221          1   


Q ss_pred             CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec--------CCCeEEEEecCccCCCCCcccCCCCCCCccc
Q 004581          292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG--------DDTKLFAYCANEFTKFSPHEICPAPQRVPIH  363 (744)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~--------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (744)
                             |++.                        .++..+        .||......+..                   
T Consensus       147 -------p~~~------------------------~vy~t~e~~~~~~~~Dg~~~~v~~d~-------------------  176 (352)
T TIGR02658       147 -------PDCY------------------------HIFPTANDTFFMHCRDGSLAKVGYGT-------------------  176 (352)
T ss_pred             -------CCCc------------------------EEEEecCCccEEEeecCceEEEEecC-------------------
Confidence                   2221                        222222        233222222211                   


Q ss_pred             cccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcC-CCCEEEEEcCCceE
Q 004581          364 LVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISN-SGMLFAYSDHVKPS  442 (744)
Q Consensus       364 ~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~la~~~~~~v~  442 (744)
                               +|+.. .  ....+++-..                  .   ... ..+    .+++ +|+++.++.++.|.
T Consensus       177 ---------~g~~~-~--~~~~vf~~~~------------------~---~v~-~rP----~~~~~dg~~~~vs~eG~V~  218 (352)
T TIGR02658       177 ---------KGNPK-I--KPTEVFHPED------------------E---YLI-NHP----AYSNKSGRLVWPTYTGKIF  218 (352)
T ss_pred             ---------CCceE-E--eeeeeecCCc------------------c---ccc-cCC----ceEcCCCcEEEEecCCeEE
Confidence                     11100 0  0000110000                  0   000 011    3455 88998888779999


Q ss_pred             EEEeecCCC-CCceEEeeeccCC--c-ccccccEEEEeeCCCEEEEEe----------CCCcEEEEEccCCceeeeeccC
Q 004581          443 LFELKKGKV-GQGEWIINKRQLP--R-KLQFAHSMIFSYDSSQLIIAG----------HDRRIYVVDVSSSELLHTFTPC  508 (744)
Q Consensus       443 l~~~~~~~~-~~~~~~~~~~~~~--~-~~~~v~~i~~spd~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~  508 (744)
                      +.++..... ....|.+-.....  + ......-++++||++++.+..          ..+.|.++|..+++.+..+.. 
T Consensus       219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-  297 (352)
T TIGR02658       219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-  297 (352)
T ss_pred             EEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence            999754211 1222322211100  0 111334499999999998853          125799999999999999885 


Q ss_pred             cccccccCCCCCCceEEEEECCCCC-EEEEEe-CCCcEEEEECCCcceEEEEe
Q 004581          509 REEHDREIQPSEPPITKMFTSSDGQ-WLAAVN-CFGDVYIFNLEIQRQHWFIS  559 (744)
Q Consensus       509 ~~~~~~~~~~~~~~i~~l~~spdg~-~las~~-~dg~i~iwd~~~~~~~~~~~  559 (744)
                                 ...+..+++|||++ +|++.+ .++.|.++|..+++.+..+.
T Consensus       298 -----------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       298 -----------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             -----------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence                       66899999999999 887776 57889999999999887773

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=3.7e-11  Score=124.33  Aligned_cols=174  Identities=17%  Similarity=0.220  Sum_probs=111.2

Q ss_pred             CeEEEEEcCCCCEEEE--EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEEEc
Q 004581          420 KIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVVDV  496 (744)
Q Consensus       420 ~i~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~d~  496 (744)
                      ...+.+|+|||+.|+.  +.++...+|.++...+.  .     ..+..+........|+|||++|+..+. +|...||.+
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~-----~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~  313 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--L-----RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM  313 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC--c-----EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence            3456789999998875  35677778877642111  1     222223334567789999999887664 455566654


Q ss_pred             --cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC---cEEEEECCCcceEEEEecCCCCceeEEee
Q 004581          497 --SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTAAGF  571 (744)
Q Consensus       497 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~  571 (744)
                        .+++... +..           ........+|||||++||..+.++   .|++||+.+++......   ........|
T Consensus       314 ~~~~g~~~~-lt~-----------~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~---~~~~~~p~~  378 (427)
T PRK02889        314 PASGGAAQR-VTF-----------TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD---TTRDESPSF  378 (427)
T ss_pred             ECCCCceEE-Eec-----------CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---CCCccCceE
Confidence              4444322 221           122344678999999999877654   69999999887543322   123467899


Q ss_pred             cCCCCCeEEEEecCC---eEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581          572 PPQNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       572 sp~~~~~l~~~~~d~---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd  628 (744)
                      +| |+++|+.++.++   .+++.++.++.            ...+..+.+.+...+|+|-
T Consensus       379 sp-dg~~l~~~~~~~g~~~l~~~~~~g~~------------~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        379 AP-NGRYILYATQQGGRSVLAAVSSDGRI------------KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CC-CCCEEEEEEecCCCEEEEEEECCCCc------------eEEeecCCCCCCCCccCCC
Confidence            99 999988887655   46666664432            2234345567777888873

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6.1e-11  Score=123.50  Aligned_cols=172  Identities=16%  Similarity=0.253  Sum_probs=109.4

Q ss_pred             CeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CC--cEEEE
Q 004581          420 KIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--RIYVV  494 (744)
Q Consensus       420 ~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg--~i~v~  494 (744)
                      .+.+.+|+|||+.|++.  .++...||.++... + ..     ..+..+........|+|||++|+..+. +|  .|+++
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~-~~-----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-G-TT-----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCC-C-ce-----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence            44567899999887653  44444444443211 1 11     223333334567899999999988764 33  68888


Q ss_pred             EccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581          495 DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGF  571 (744)
Q Consensus       495 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~  571 (744)
                      |+.+++.. .+..           +...+....|||||++|+..+.+   ..|.+||++++... .+..  ...+....|
T Consensus       320 d~~g~~~~-~lt~-----------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~--~~~~~~p~~  384 (435)
T PRK05137        320 NADGSNPR-RISF-----------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS--GFLVEGPTW  384 (435)
T ss_pred             ECCCCCeE-Eeec-----------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC--CCCCCCCeE
Confidence            88766543 3332           34456778999999999887653   36888998766543 3322  234678899


Q ss_pred             cCCCCCeEEEEecC------CeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581          572 PPQNNNVLIITTSS------NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP  627 (744)
Q Consensus       572 sp~~~~~l~~~~~d------~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp  627 (744)
                      +| |+++|+..+.+      ..++++|+.++...            .+. ..+.+...+|+|
T Consensus       385 sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~------------~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        385 AP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNER------------EVP-TPGDASDPAWSP  432 (435)
T ss_pred             CC-CCCEEEEEEccCCCCCcceEEEEECCCCceE------------Ecc-CCCCccCcccCC
Confidence            99 99998876653      26888888776531            122 234466677776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.7e-11  Score=127.48  Aligned_cols=188  Identities=17%  Similarity=0.160  Sum_probs=125.6

Q ss_pred             CCCCCCeeEEecC---CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            1 MGLPGGRLFSSSI---DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         1 ~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      |+|+|.+|+..+.   +..|.+||+.+++... +..+.+...+++|+|||+.+                           
T Consensus       211 wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l---------------------------  262 (433)
T PRK04922        211 WSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL---------------------------  262 (433)
T ss_pred             CCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE---------------------------
Confidence            6788888887763   3579999998877644 33445556689999999533                           


Q ss_pred             ccCCCCCCcccccccccccCCeEEEEecCC--eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCe-
Q 004581           78 SESENDSDSDELHEQSVVEDRRVALACDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGY-  153 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~-  153 (744)
                                            +++.+.+|  .|++||+.+++.    +.+..|......++|+|||+.|+.++. +|. 
T Consensus       263 ----------------------~~~~s~~g~~~Iy~~d~~~g~~----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~  316 (433)
T PRK04922        263 ----------------------ALTLSRDGNPEIYVMDLGSRQL----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRP  316 (433)
T ss_pred             ----------------------EEEEeCCCCceEEEEECCCCCe----EECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence                                  22334444  699999976543    445566666678999999999887764 444 


Q ss_pred             -EEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC---CEEEEeCCCcceEEEeeccccceeEEE
Q 004581          154 -IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNALA  228 (744)
Q Consensus       154 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~l~  228 (744)
                       |.++|+.+++.. .+..        .......++|+||| .|+..+.++   .|.+||+.+++.. .+. +........
T Consensus       317 ~iy~~dl~~g~~~-~lt~--------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~  385 (433)
T PRK04922        317 QIYRVAASGGSAE-RLTF--------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS  385 (433)
T ss_pred             eEEEEECCCCCeE-Eeec--------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce
Confidence             777777776543 3331        22233468999999 665544332   5999999887655 343 223455679


Q ss_pred             EcCCCCEEEeecCC---CeEEEEEcccC
Q 004581          229 AAPSHNRVFSTGSD---GQVILYKASCE  253 (744)
Q Consensus       229 ~~~~~~~l~~~~~d---g~i~iw~~~~~  253 (744)
                      |+|||++|+..+.+   +.+.+++....
T Consensus       386 ~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        386 FAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            99999988776553   35667776543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.2e-11  Score=114.63  Aligned_cols=194  Identities=16%  Similarity=0.198  Sum_probs=152.1

Q ss_pred             CCCCeeEEecCCCeEEEEEccCC----ceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCc
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDL----KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS   78 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (744)
                      ..++.|++|-.+|.+.+|..+.+    ..+..+..+ ..+..|.-+|...                              
T Consensus       113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p------------------------------  161 (412)
T KOG3881|consen  113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP------------------------------  161 (412)
T ss_pred             hcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCC------------------------------
Confidence            45788999999999999998843    233344432 4455555555443                              


Q ss_pred             cCCCCCCcccccccccccCCeEEEEecC--CeEEEEEecCCCceeEeecccC------ccCcEEEEEEecC--CCEEEEE
Q 004581           79 ESENDSDSDELHEQSVVEDRRVALACDD--GCVRIYRITDSDELIYHRSLPR------VSGRVLSVTWSAD--GNMLYSG  148 (744)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~------h~~~V~~~~~s~d--g~~l~t~  148 (744)
                                         ..+|+|+..  ..+.|||++..+++...+....      -.-.++++.|-+.  ...||++
T Consensus       162 -------------------~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~  222 (412)
T KOG3881|consen  162 -------------------YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI  222 (412)
T ss_pred             -------------------ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE
Confidence                               367789998  8999999986644322222211      1225788999887  7899999


Q ss_pred             eCCCeEEEEEccCCc-eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEE-eecccccee
Q 004581          149 SSDGYIRSWDAKLGY-EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQA-HSFHKGDVN  225 (744)
Q Consensus       149 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~  225 (744)
                      +.-+.+|+||...++ ++..+.        -.+..+.++...|++ .+++|...|.+..+|++.+..+.. +.+-.+.|.
T Consensus       223 T~~hqvR~YDt~~qRRPV~~fd--------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir  294 (412)
T KOG3881|consen  223 TRYHQVRLYDTRHQRRPVAQFD--------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR  294 (412)
T ss_pred             ecceeEEEecCcccCcceeEec--------cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence            999999999998775 455555        367889999999999 899999999999999999988866 889999999


Q ss_pred             EEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          226 ALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       226 ~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      ++..+|.+.+++++|.|..|+|+|+.+..
T Consensus       295 sih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  295 SIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             eEEEcCCCceEEeeccceeEEEeecccch
Confidence            99999999999999999999999999854

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=3.1e-10  Score=114.49  Aligned_cols=421  Identities=14%  Similarity=0.101  Sum_probs=249.0

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecC------------CCEEEEEeCCCeEEEEEccCCceEE
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSAD------------GNMLYSGSSDGYIRSWDAKLGYEIY  166 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~d------------g~~l~t~~~dg~i~vwd~~~~~~~~  166 (744)
                      ++|.|+. ..|.+-|..+-+.+   +.+..|...|+.+.|.|.            .-.||++...|.|.+||...+..+.
T Consensus        28 LiAygsh-slV~VVDs~s~q~i---qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~  103 (1062)
T KOG1912|consen   28 LIAYGSH-SLVSVVDSRSLQLI---QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN  103 (1062)
T ss_pred             eEEEecC-ceEEEEehhhhhhh---hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence            8888887 57888887755555   888999999999999873            1257778888999999999998888


Q ss_pred             EEEecCCCCCCCCceeEEEEEEecCC-----eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeec
Q 004581          167 RITVGLGGLGSGPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTG  240 (744)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~  240 (744)
                      .+.        .+...+..++|.+..     .|++-.....|.+|+..+|+.+...........|+.+.| |.+.+..-+
T Consensus       104 ~l~--------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen  104 WLS--------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             hhc--------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            887        577888888887643     567777788999999999999988887777788899998 567777777


Q ss_pred             CCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccccc
Q 004581          241 SDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKW  320 (744)
Q Consensus       241 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  320 (744)
                      ..|.+.+-+.-......                       .+..-+.+..+.+..   +..+                  
T Consensus       176 s~g~vl~~~~l~~sep~-----------------------~pgk~~qI~sd~Sdl---~~le------------------  211 (1062)
T KOG1912|consen  176 SKGFVLSCKDLGLSEPD-----------------------VPGKEFQITSDHSDL---AHLE------------------  211 (1062)
T ss_pred             cCceEEEEeccCCCCCC-----------------------CCceeEEEecCccch---hhhh------------------
Confidence            88888777655432100                       011111111000000   0000                  


Q ss_pred             ccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCC--eEEEEEeCCeEEEEEeeccCCcccC
Q 004581          321 AHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHT--SLLLVQYSCRLDILSVRLENNVESR  398 (744)
Q Consensus       321 ~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~i~i~~~~~~~~~~~~  398 (744)
                           .-.+++         +..+..         .+..........++|+|.  ..++++....+.++++....     
T Consensus       212 -----re~at~---------ns~ts~---------~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~-----  263 (1062)
T KOG1912|consen  212 -----RETATG---------NSTTST---------PASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC-----  263 (1062)
T ss_pred             -----hhhhcc---------ccccCC---------CcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-----
Confidence                 011111         000000         000001122335667774  45777888899999888665     


Q ss_pred             CCCCCCCCcceEEEEEecCCCCeEEEEEcCCC--CEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCccc-cccc---
Q 004581          399 SSSGGHASTSLLVQVKSKASRKIICSTISNSG--MLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKL-QFAH---  471 (744)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~-~~v~---  471 (744)
                                ++..+..+. ..+.-+.+-|++  ..|.+ -.+|.+.+|.........+   .....+.... ..+.   
T Consensus       264 ----------~l~vvpier-~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~---~~~~~l~~dl~~Q~~~vr  329 (1062)
T KOG1912|consen  264 ----------CLAVVPIER-GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK---KPNASLSMDLGEQVHVVR  329 (1062)
T ss_pred             ----------eeEEEEecc-CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc---ccchhhccccccceEEEe
Confidence                      444444332 334445566666  34544 5899999887764111111   1111111100 0111   


Q ss_pred             --------EEEEeeC-CCEEEEEeCCCcEEEEEccCCceeeeeccCc-c-------------------cccccCCCCCCc
Q 004581          472 --------SMIFSYD-SSQLIIAGHDRRIYVVDVSSSELLHTFTPCR-E-------------------EHDREIQPSEPP  522 (744)
Q Consensus       472 --------~i~~spd-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~  522 (744)
                              ..+--|. ...++.--.+|.+.+|.+.+|+.-....... +                   ..-.....|...
T Consensus       330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sG  409 (1062)
T KOG1912|consen  330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSG  409 (1062)
T ss_pred             echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCC
Confidence                    1122233 3344444567788889887654321111000 0                   000112345555


Q ss_pred             eEEEEECC-----------CCC-------EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec
Q 004581          523 ITKMFTSS-----------DGQ-------WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS  584 (744)
Q Consensus       523 i~~l~~sp-----------dg~-------~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~  584 (744)
                      .++....|           -|+       ++|.|...|+|.++|+.++.....+. .|.+.|.++.|.. . ..|++.+.
T Consensus       410 s~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs-vht~~VkgleW~g-~-sslvSfsy  486 (1062)
T KOG1912|consen  410 STCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS-VHTSLVKGLEWLG-N-SSLVSFSY  486 (1062)
T ss_pred             ceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc-ccccceeeeeecc-c-eeEEEeee
Confidence            55444332           232       67889999999999999998777664 4778999999975 3 33444432


Q ss_pred             ----------CCeEEEEEcCCCccccccccccCCccccccc-CCCceEEEEeCCCC
Q 004581          585 ----------SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE-FPGEVIGLSFSPSP  629 (744)
Q Consensus       585 ----------d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~-~~~~v~~i~fspdg  629 (744)
                                -+.+.+=|+.+|.-..         .+.+++ ...+|..|..|..|
T Consensus       487 s~~n~~sg~vrN~l~vtdLrtGlsk~---------fR~l~~~despI~~irvS~~~  533 (1062)
T KOG1912|consen  487 SHVNSASGGVRNDLVVTDLRTGLSKR---------FRGLQKPDESPIRAIRVSSSG  533 (1062)
T ss_pred             ccccccccceeeeEEEEEcccccccc---------cccCCCCCcCcceeeeecccC
Confidence                      2467888999885321         111111 23677888877764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1e-10  Score=113.88  Aligned_cols=170  Identities=12%  Similarity=0.121  Sum_probs=124.5

Q ss_pred             CCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeec----cCCcccccccEEEEeeCCCEEEEEeCCCcEEE
Q 004581          419 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKR----QLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYV  493 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v  493 (744)
                      ..+.++.+++...+|++| .++.|..||... .......+....    ........|+++.|+.||-.+++|+.+|.|.|
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i  254 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI  254 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence            557778888888899997 589999999876 222333233221    11112236999999999999999999999999


Q ss_pred             EEccCCceeeeeccCcccccccCCCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEee
Q 004581          494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSD--GQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGF  571 (744)
Q Consensus       494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~  571 (744)
                      ||+.+.+++..-...          ..-+|..+.|-+.  ++.+++. ....++|||-.+++....+...  ..+..+++
T Consensus       255 yDLRa~~pl~~kdh~----------~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt--~~lND~C~  321 (703)
T KOG2321|consen  255 YDLRASKPLLVKDHG----------YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT--SDLNDFCF  321 (703)
T ss_pred             EEcccCCceeecccC----------CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc--CCcCceee
Confidence            999877766543321          4678999999775  4455555 3457999999999987777543  46999999


Q ss_pred             cCCCCCeEEEEecCCeEEEEEcC-CCccccccc
Q 004581          572 PPQNNNVLIITTSSNQVYVFDVE-AKQLGEWSM  603 (744)
Q Consensus       572 sp~~~~~l~~~~~d~~v~vwd~~-~~~~~~ws~  603 (744)
                      -| ++.++++|..+..+..|=+. -|....|..
T Consensus       322 ~p-~sGm~f~Ane~~~m~~yyiP~LGPaPrWCS  353 (703)
T KOG2321|consen  322 VP-GSGMFFTANESSKMHTYYIPSLGPAPRWCS  353 (703)
T ss_pred             ec-CCceEEEecCCCcceeEEccccCCCchhhh
Confidence            99 88999999998877776654 455555654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=8.6e-10  Score=107.09  Aligned_cols=352  Identities=14%  Similarity=0.177  Sum_probs=190.9

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-----------CCeEEEEEccCCceEE
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----------DGYIRSWDAKLGYEIY  166 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----------dg~i~vwd~~~~~~~~  166 (744)
                      .+|++--..| |.+|-   |+.....+.|. |. .|.-+.|||..++|+|-+.           ...++|||+.+|...+
T Consensus       223 TYL~t~Hk~G-I~lWG---G~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr  296 (698)
T KOG2314|consen  223 TYLVTFHKQG-IALWG---GESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR  296 (698)
T ss_pred             eEEEEEeccc-eeeec---CccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc
Confidence            5666666544 77885   33332224443 54 5889999999999999653           2579999999999998


Q ss_pred             EEEecCCCCCCCCceeEEE-EEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeE
Q 004581          167 RITVGLGGLGSGPELCIWS-LLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV  245 (744)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i  245 (744)
                      .+...      .....+|. ..||-|+.+++.-....|.|++..+..++..-......|....|+|.++.|+        
T Consensus       297 sF~~~------~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA--------  362 (698)
T KOG2314|consen  297 SFPVI------KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA--------  362 (698)
T ss_pred             ceecc------CCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEE--------
Confidence            88753      13334443 4788888444444447799999887555433333456788899999865544        


Q ss_pred             EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581          246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV  325 (744)
Q Consensus       246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  325 (744)
                       .|...+.....                        .+.-+.+          |..+.++..+.-..... ...| ..++
T Consensus       363 -Ywtpe~~~~pa------------------------rvtL~ev----------Ps~~~iRt~nlfnVsDc-kLhW-Qk~g  405 (698)
T KOG2314|consen  363 -YWTPETNNIPA------------------------RVTLMEV----------PSKREIRTKNLFNVSDC-KLHW-QKSG  405 (698)
T ss_pred             -EEcccccCCcc------------------------eEEEEec----------Cccceeeeccceeeecc-EEEe-ccCC
Confidence             44433322100                        0011111          11110000000000000 0000 0011


Q ss_pred             cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCC
Q 004581          326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA  405 (744)
Q Consensus       326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~  405 (744)
                      ++|         ++.-.+..+                           +. +-..-..+.|++++..+..          
T Consensus       406 dyL---------cvkvdR~tK---------------------------~~-~~g~f~n~eIfrireKdIp----------  438 (698)
T KOG2314|consen  406 DYL---------CVKVDRHTK---------------------------SK-VKGQFSNLEIFRIREKDIP----------  438 (698)
T ss_pred             cEE---------EEEEEeecc---------------------------cc-ccceEeeEEEEEeeccCCC----------
Confidence            111         111111000                           00 0000025667777654422          


Q ss_pred             CcceEEEEEecCCCCeEEEEEcCCCCEEEE--E--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCE
Q 004581          406 STSLLVQVKSKASRKIICSTISNSGMLFAY--S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQ  481 (744)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~--~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~  481 (744)
                          +..+..  ...+...+|-|.|..+++  +  ...++++|.+........+   - ..+..  ...+.+.|+|.|++
T Consensus       439 ----ve~vel--ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l---V-k~~dk--~~~N~vfwsPkG~f  506 (698)
T KOG2314|consen  439 ----VEVVEL--KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL---V-KELDK--KFANTVFWSPKGRF  506 (698)
T ss_pred             ----ceeeec--chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh---h-hhhcc--cccceEEEcCCCcE
Confidence                222222  377899999999977766  3  4457888888742222221   1 12222  36789999999999


Q ss_pred             EEEE---eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC------cEEEEECCCc
Q 004581          482 LIIA---GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG------DVYIFNLEIQ  552 (744)
Q Consensus       482 l~~~---~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg------~i~iwd~~~~  552 (744)
                      ++++   +..|.+..+|+.-..+..+-..           .....+.+.|.|.|+|+++++...      --+||++.+.
T Consensus       507 vvva~l~s~~g~l~F~D~~~a~~k~~~~~-----------eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  507 VVVAALVSRRGDLEFYDTDYADLKDTASP-----------EHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             EEEEEecccccceEEEecchhhhhhccCc-----------cccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            9877   4578999999874333222222           234567899999999999987543      3445555443


Q ss_pred             ceEEEEecCCCCceeEEeecCCCCCeEEE
Q 004581          553 RQHWFISRLEGASVTAAGFPPQNNNVLII  581 (744)
Q Consensus       553 ~~~~~~~~~~~~~v~~l~~sp~~~~~l~~  581 (744)
                      .....+.    .....+.|-| ....+++
T Consensus       576 ll~~~~i----~~f~qF~WRP-RPps~LS  599 (698)
T KOG2314|consen  576 LLKEDII----DRFKQFLWRP-RPPSLLS  599 (698)
T ss_pred             HHHHHHH----HHHHhhccCC-CCCcccC
Confidence            2211110    2333456666 5554444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.41  E-value=7.4e-10  Score=113.72  Aligned_cols=310  Identities=17%  Similarity=0.201  Sum_probs=184.0

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581          142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK  221 (744)
Q Consensus       142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~  221 (744)
                      +..+++++.++.|..+|..+|+.+........     ..   ..... .++.++.++.++.+..+|..+|+.+.......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----~~---~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----LS---GGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----cc---cceEE-cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence            66888888999999999999999988764211     11   11111 25588889999999999999999887765432


Q ss_pred             cceeE-EEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee-eeccCCCCCCCC
Q 004581          222 GDVNA-LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT-VAVPISREDPLP  299 (744)
Q Consensus       222 ~~v~~-l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~~~~~  299 (744)
                       .+.+ ...  .+..++.++.+|.+..||..+++             ..|...    ... ....+. .+.        |
T Consensus       136 -~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~-------------~~W~~~----~~~-~~~~~~~~~s--------p  186 (377)
T TIGR03300       136 -EVLSPPLV--ANGLVVVRTNDGRLTALDAATGE-------------RLWTYS----RVT-PALTLRGSAS--------P  186 (377)
T ss_pred             -eeecCCEE--ECCEEEEECCCCeEEEEEcCCCc-------------eeeEEc----cCC-CceeecCCCC--------C
Confidence             2222 122  24578888889999999998876             233321    111 000000 000        0


Q ss_pred             cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEE
Q 004581          300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQ  379 (744)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  379 (744)
                      -                     . .+..++.+..++.+..+|..+....                               
T Consensus       187 ~---------------------~-~~~~v~~~~~~g~v~ald~~tG~~~-------------------------------  213 (377)
T TIGR03300       187 V---------------------I-ADGGVLVGFAGGKLVALDLQTGQPL-------------------------------  213 (377)
T ss_pred             E---------------------E-ECCEEEEECCCCEEEEEEccCCCEe-------------------------------
Confidence            0                     0 0125677777888888887654322                               


Q ss_pred             eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEee
Q 004581          380 YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN  459 (744)
Q Consensus       380 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~  459 (744)
                             |........       +..   ....+......+    .+ .++..++.+.++.+..|+..+   +..+|...
T Consensus       214 -------W~~~~~~~~-------g~~---~~~~~~~~~~~p----~~-~~~~vy~~~~~g~l~a~d~~t---G~~~W~~~  268 (377)
T TIGR03300       214 -------WEQRVALPK-------GRT---ELERLVDVDGDP----VV-DGGQVYAVSYQGRVAALDLRS---GRVLWKRD  268 (377)
T ss_pred             -------eeeccccCC-------CCC---chhhhhccCCcc----EE-ECCEEEEEEcCCEEEEEECCC---CcEEEeec
Confidence                   211110000       000   000000000001    11 134445556788888888865   55677654


Q ss_pred             eccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe
Q 004581          460 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN  539 (744)
Q Consensus       460 ~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~  539 (744)
                      .   .    .....  ..++..+++++.+|.++.+|..+|+.+......          ......+...  .+..|++++
T Consensus       269 ~---~----~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~----------~~~~~ssp~i--~g~~l~~~~  327 (377)
T TIGR03300       269 A---S----SYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL----------KYRQLTAPAV--VGGYLVVGD  327 (377)
T ss_pred             c---C----CccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc----------cCCccccCEE--ECCEEEEEe
Confidence            2   1    11122  235678888889999999999999877655321          1111222222  466889999


Q ss_pred             CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEE
Q 004581          540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vw  591 (744)
                      .+|.|+++|.++++.++.++........+.++.  + +.|++++.||.|+.|
T Consensus       328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence            999999999999999888865332122333443  3 458899999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.40  E-value=9.9e-08  Score=106.35  Aligned_cols=418  Identities=13%  Similarity=0.144  Sum_probs=237.1

Q ss_pred             CcccccccccccCCeEEEEecCCeEEEE----EecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIY----RITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAK  160 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~  160 (744)
                      .+..+....+.+...++.+..+|.|.+.    +.. ...+   .....-...|.+++||||+..|+..+.++++.+-+- 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-~~~~---E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-  149 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD-EDEI---EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-  149 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-Ccee---EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-
Confidence            3444555555666789999999999999    443 2233   222334678999999999999999999988887652 


Q ss_pred             CCceEEEEEec------------------------CCC-----------------CCCCCceeEEEEEEecCC-eEEEEc
Q 004581          161 LGYEIYRITVG------------------------LGG-----------------LGSGPELCIWSLLSLRCG-TLVSAD  198 (744)
Q Consensus       161 ~~~~~~~~~~~------------------------~~~-----------------~~~~~~~~v~~~~~~~~~-~l~s~~  198 (744)
                      +...+......                        .+.                 ... ....-..++|-.|| ++++.+
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence            22222211110                        000                 001 33355678999999 666554


Q ss_pred             C---C---CCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC---CCeEEEEEcccCcCCCCCCCCcccccce
Q 004581          199 S---T---GSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKK  269 (744)
Q Consensus       199 ~---d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~  269 (744)
                      -   .   ..++||+-+ |.+..+-..-.+--.+++|.|.|++|++.-.   ...|.+|..++-.-+            .
T Consensus       229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg------------e  295 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG------------E  295 (928)
T ss_pred             EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee------------e
Confidence            3   2   569999976 7655544433344467899999999988654   456777776553310            0


Q ss_pred             EEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCC
Q 004581          270 WIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFS  349 (744)
Q Consensus       270 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~  349 (744)
                      +  .-.+......|..++|+         +|+.                        .|+..-.|. |.+|-..+..-+-
T Consensus       296 F--~l~~~~~~~~v~~l~Wn---------~ds~------------------------iLAv~~~~~-vqLWt~~NYHWYL  339 (928)
T PF04762_consen  296 F--TLRFDPEEEKVIELAWN---------SDSE------------------------ILAVWLEDR-VQLWTRSNYHWYL  339 (928)
T ss_pred             E--ecCCCCCCceeeEEEEC---------CCCC------------------------EEEEEecCC-ceEEEeeCCEEEE
Confidence            0  11112345678899997         5554                        777766554 9999887643221


Q ss_pred             CcccCCCCCCCccccccceeecCCe---EEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEE
Q 004581          350 PHEICPAPQRVPIHLVHNTIFSHTS---LLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTI  426 (744)
Q Consensus       350 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  426 (744)
                      ...... +   ....+..+.|+|..   ..+.+.++.+..+++......                    .       -..
T Consensus       340 Kqei~~-~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~--------------------s-------~~~  388 (928)
T PF04762_consen  340 KQEIRF-S---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR--------------------S-------PGS  388 (928)
T ss_pred             EEEEEc-c---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe--------------------c-------CCC
Confidence            111100 0   00122236777632   334444455554443321100                    0       001


Q ss_pred             cC-CCCEEEEEcCCceEEEEeecCCC--CCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee-
Q 004581          427 SN-SGMLFAYSDHVKPSLFELKKGKV--GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-  502 (744)
Q Consensus       427 s~-~g~~la~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~-  502 (744)
                      +| |...+++-+...+.+-.+....-  ....+   ...+   ...|.+++|++++..+++-..||.|.+|........ 
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~---~l~~---~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~  462 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY---ELEL---PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWS  462 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccCCCchHhce---EEcC---CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCccc
Confidence            12 22334445555666655543100  11111   1112   238999999999999999999999999996533211 


Q ss_pred             -------eeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceE---EEEecCCCCceeEE
Q 004581          503 -------HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQH---WFISRLEGASVTAA  569 (744)
Q Consensus       503 -------~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~---~~~~~~~~~~v~~l  569 (744)
                             ..+... .............+..++|..+...++..+.+   ..+.++++...+..   ..... -...+..+
T Consensus       463 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~  540 (928)
T PF04762_consen  463 VKPPKLLSSISLD-SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTE-VDGVVLII  540 (928)
T ss_pred             ccCcchhhhcccc-cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEec-cCceEEEE
Confidence                   111100 00000011134567888998888877776664   67888888543321   12222 12456666


Q ss_pred             eecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581          570 GFPPQNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       570 ~~sp~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                      ...+ +...++.-..+|++...+.....
T Consensus       541 ~~~~-~~~~~~~q~~~G~v~~~~~~~~~  567 (928)
T PF04762_consen  541 SSSP-DSGSLYIQTNDGKVFQLSSDGEL  567 (928)
T ss_pred             eeCC-CCcEEEEEECCCEEEEeecCCCc
Confidence            6665 44457788889999877766553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=3.2e-09  Score=98.61  Aligned_cols=304  Identities=13%  Similarity=0.118  Sum_probs=185.5

Q ss_pred             CCCEEEEeCCC--cceE-EEeeccccceeEEEEcCCCCEEEeecC---CCeEEEEEcccCcCCCCCCCCcccccceEEEE
Q 004581          200 TGSVQFWDSRH--GTLL-QAHSFHKGDVNALAAAPSHNRVFSTGS---DGQVILYKASCESIGPNDGLSSSEVIKKWIYV  273 (744)
Q Consensus       200 dg~i~vwd~~~--~~~~-~~~~~h~~~v~~l~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  273 (744)
                      +.-|.+|++.+  |+.- ..+-.+.+..+-|+|+|++++|+++..   +|.|..|.++...-             ....+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G-------------~Lt~l   81 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG-------------RLTFL   81 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC-------------eEEEe
Confidence            56699999874  2221 222345778899999999999998754   57888888876310             01111


Q ss_pred             eeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEec-CCCeEEEEecCccCCCCCc-
Q 004581          274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPH-  351 (744)
Q Consensus       274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~-~d~~i~~~~~~~~~~~~~~-  351 (744)
                      .........-..++++         ++++                        +++++. ..|.|.++.+.....+... 
T Consensus        82 n~~~~~g~~p~yvsvd---------~~g~------------------------~vf~AnY~~g~v~v~p~~~dG~l~~~v  128 (346)
T COG2706          82 NRQTLPGSPPCYVSVD---------EDGR------------------------FVFVANYHSGSVSVYPLQADGSLQPVV  128 (346)
T ss_pred             eccccCCCCCeEEEEC---------CCCC------------------------EEEEEEccCceEEEEEcccCCccccce
Confidence            1111122222556664         4443                        666655 4568999998764433222 


Q ss_pred             -----ccCCCCCCCccccccceeecCCeEEEEEeC---CeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEE
Q 004581          352 -----EICPAPQRVPIHLVHNTIFSHTSLLLVQYS---CRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC  423 (744)
Q Consensus       352 -----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (744)
                           .......+.....+....+.|++++++..+   ..+.+|++..+...             .......+.....+.
T Consensus       129 ~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~-------------~~~~~~v~~G~GPRH  195 (346)
T COG2706         129 QVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT-------------PADPAEVKPGAGPRH  195 (346)
T ss_pred             eeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc-------------cccccccCCCCCcce
Confidence                 111111222233477888999998887654   48888888844322             122222345577889


Q ss_pred             EEEcCCCCEEEE--EcCCceEEEEeecCCCCCceEEeee-ccCCccc---ccccEEEEeeCCCEEEEEeC-CCcEEEEEc
Q 004581          424 STISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINK-RQLPRKL---QFAHSMIFSYDSSQLIIAGH-DRRIYVVDV  496 (744)
Q Consensus       424 ~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~---~~v~~i~~spd~~~l~~~~~-dg~i~v~d~  496 (744)
                      ++|+|++++..+  --+++|-+|..+..  ..++-.++. ..++...   ....+|.+++||++|.+... ...|.+|.+
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V  273 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV  273 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence            999999998666  37889999999873  222222222 1222222   26778899999999998865 457888888


Q ss_pred             cCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC-CcEEEEECC--CcceEEEEecCCCCceeEEeec
Q 004581          497 SSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-GDVYIFNLE--IQRQHWFISRLEGASVTAAGFP  572 (744)
Q Consensus       497 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~s  572 (744)
                      ... ..+..+.....        +......+.|+++|++|+++..+ ..|.+|.++  ++++...........+.|+.|.
T Consensus       274 ~~~~g~L~~~~~~~t--------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         274 DPDGGKLELVGITPT--------EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cCCCCEEEEEEEecc--------CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            522 22222221111        34447789999999999998864 468898875  4544333332334566777774

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=7.5e-10  Score=107.51  Aligned_cols=315  Identities=13%  Similarity=0.192  Sum_probs=197.2

Q ss_pred             eEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecC-----------CCeEEEEE
Q 004581          182 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGS-----------DGQVILYK  249 (744)
Q Consensus       182 ~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~-----------dg~i~iw~  249 (744)
                      .-+-+.|||-| +|++-. ..-|.+|-..+...++.+. | ..|.-+.|||+.++|++=+.           ...+.|||
T Consensus       212 Tetyv~wSP~GTYL~t~H-k~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFH-KQGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeeEEecCCceEEEEEe-ccceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            34568999999 565555 4458999888776666664 3 46889999999999998542           26799999


Q ss_pred             cccCcCCCCCCCCcccccceEEEEeeeeec--cCcc-eeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581          250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAH--THDV-RALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP  326 (744)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  326 (744)
                      +.++..                 .+.+...  ...+ .-..|+         .|++                        
T Consensus       289 I~tG~l-----------------krsF~~~~~~~~~WP~frWS---------~DdK------------------------  318 (698)
T KOG2314|consen  289 IATGLL-----------------KRSFPVIKSPYLKWPIFRWS---------HDDK------------------------  318 (698)
T ss_pred             ccccch-----------------hcceeccCCCccccceEEec---------cCCc------------------------
Confidence            999873                 1222110  0001 112222         2332                        


Q ss_pred             EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCC-------eEEEEEeeccCCcccCC
Q 004581          327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSC-------RLDILSVRLENNVESRS  399 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------~i~i~~~~~~~~~~~~~  399 (744)
                      +++--.. .+|.+|+...+..+.....       ....|....|+|.+.+||-...       .+.+..+....      
T Consensus       319 y~Arm~~-~sisIyEtpsf~lld~Ksl-------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~------  384 (698)
T KOG2314|consen  319 YFARMTG-NSISIYETPSFMLLDKKSL-------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR------  384 (698)
T ss_pred             eeEEecc-ceEEEEecCceeeeccccc-------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc------
Confidence            5554443 6788998877655443332       3367889999999988886532       34444333222      


Q ss_pred             CCCCCCCcceEEEEEecCCCCeE--EEEEcCCCCEEEEEcCC-----------ceEEEEeecCCCCCceEEeeeccCCcc
Q 004581          400 SSGGHASTSLLVQVKSKASRKII--CSTISNSGMLFAYSDHV-----------KPSLFELKKGKVGQGEWIINKRQLPRK  466 (744)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~g~~la~~~~~-----------~v~l~~~~~~~~~~~~~~~~~~~~~~~  466 (744)
                                  ++....-.++.  .+-|-.+|.+|++-.+.           .+.||+++..+-.+..     ..+.  
T Consensus       385 ------------~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-----velk--  445 (698)
T KOG2314|consen  385 ------------EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-----VELK--  445 (698)
T ss_pred             ------------eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-----eecc--
Confidence                        11111112222  34466788888873221           2445555542211111     2222  


Q ss_pred             cccccEEEEeeCCCEEEEEeC---CCcEEEEEccC-C---ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe
Q 004581          467 LQFAHSMIFSYDSSQLIIAGH---DRRIYVVDVSS-S---ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN  539 (744)
Q Consensus       467 ~~~v~~i~~spd~~~l~~~~~---dg~i~v~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~  539 (744)
                       ..+...+|-|.|..+++-+.   ..++.+|.+++ .   +++..|.             ....+.+.|||.|++++.+.
T Consensus       446 -e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-------------k~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  446 -ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-------------KKFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             -hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-------------ccccceEEEcCCCcEEEEEE
Confidence             27888999999998876643   35799998873 2   3444443             34577899999999998764


Q ss_pred             ---CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec------CCeEEEEEcCCCcc
Q 004581          540 ---CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS------SNQVYVFDVEAKQL  598 (744)
Q Consensus       540 ---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~------d~~v~vwd~~~~~~  598 (744)
                         ..|.+..+|+.-......-...| ...+.+.|.| .|+|+++++.      |+-.++|++.+..+
T Consensus       512 l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGrll  577 (698)
T KOG2314|consen  512 LVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGRLL  577 (698)
T ss_pred             ecccccceEEEecchhhhhhccCccc-cccccceECC-CCCEEEEeeehhhhccccceEEEEeecHHH
Confidence               57899999998533322222223 3678899999 9999999875      55678898888764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=7.3e-10  Score=106.64  Aligned_cols=367  Identities=13%  Similarity=0.100  Sum_probs=216.3

Q ss_pred             EEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccccC
Q 004581           18 SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVED   97 (744)
Q Consensus        18 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (744)
                      ..|+.++-..-..+.....++..+.+||.|+                                                 
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~-------------------------------------------------   45 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGT-------------------------------------------------   45 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcch-------------------------------------------------
Confidence            5677777666666666778999999999994                                                 


Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC---------------eEEEEEccCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG---------------YIRSWDAKLG  162 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg---------------~i~vwd~~~~  162 (744)
                       +|++... ..|.+|.-.....+   ..+. | ..|..+.|||.+++|+|-+..+               .+.+||..+|
T Consensus        46 -~l~~~~~-~~V~~~~g~~~~~l---~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg  118 (561)
T COG5354          46 -YLFSEHA-AGVECWGGPSKAKL---VRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG  118 (561)
T ss_pred             -heehhhc-cceEEccccchhhe---eeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc
Confidence             4444433 45889987755544   3333 3 4689999999999999975433               4999999999


Q ss_pred             ceEEEEEecCCCCCCCCceeEE-EEEEecCCeEEEEcCCCCEEEEeCCCcceE----EEeeccccceeEEEEcCCCC--E
Q 004581          163 YEIYRITVGLGGLGSGPELCIW-SLLSLRCGTLVSADSTGSVQFWDSRHGTLL----QAHSFHKGDVNALAAAPSHN--R  235 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~--~  235 (744)
                      ..+..+...      ......| -+.|+-+..+++=-....+.|+++ ++..-    ..++  ...|....|+|.++  .
T Consensus       119 ~iv~sf~~~------~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~  189 (561)
T COG5354         119 MIVFSFNGI------SQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDE  189 (561)
T ss_pred             eeEeecccc------CCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCce
Confidence            999888742      2222356 677887773322224556899997 33221    2222  35678888888652  2


Q ss_pred             EEe-----ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCC
Q 004581          236 VFS-----TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGRE  310 (744)
Q Consensus       236 l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~  310 (744)
                      |+.     .+.++.+++|.+..+..                 +.......-+-..+.|.         +.|         
T Consensus       190 la~~tPEk~~kpa~~~i~sIp~~s~-----------------l~tk~lfk~~~~qLkW~---------~~g---------  234 (561)
T COG5354         190 LAYWTPEKLNKPAMVRILSIPKNSV-----------------LVTKNLFKVSGVQLKWQ---------VLG---------  234 (561)
T ss_pred             EEEEccccCCCCcEEEEEEccCCCe-----------------eeeeeeEeecccEEEEe---------cCC---------
Confidence            332     34566666666654331                 11111111111112221         111         


Q ss_pred             CCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEee
Q 004581          311 KPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVR  390 (744)
Q Consensus       311 ~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~  390 (744)
                                     .+|..--      .-+....+                     -.         .+...+.|+++.
T Consensus       235 ---------------~~ll~l~------~t~~ksnK---------------------sy---------fgesnLyl~~~~  263 (561)
T COG5354         235 ---------------KYLLVLV------MTHTKSNK---------------------SY---------FGESNLYLLRIT  263 (561)
T ss_pred             ---------------ceEEEEE------EEeeeccc---------------------ce---------eccceEEEEeec
Confidence                           1111100      00000000                     00         011244455544


Q ss_pred             ccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE---cCCceEEEEeecCCCCCceEEeeeccCCccc
Q 004581          391 LENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS---DHVKPSLFELKKGKVGQGEWIINKRQLPRKL  467 (744)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~---~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~  467 (744)
                      .....                 ....-.+.|...+|.|.++.+++.   ....+.+|++..   .+..      .++  .
T Consensus       264 e~~i~-----------------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~---Nl~~------~~P--e  315 (561)
T COG5354         264 ERSIP-----------------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG---NLRF------YFP--E  315 (561)
T ss_pred             ccccc-----------------eeccccccceeeeecccCCceeEEecccccceeeccccc---ceEE------ecC--C
Confidence            22211                 111224789999999999877662   566777787764   2221      111  1


Q ss_pred             ccccEEEEeeCCCEEEEEeCC---CcEEEEEccCCce-eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe----
Q 004581          468 QFAHSMIFSYDSSQLIIAGHD---RRIYVVDVSSSEL-LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN----  539 (744)
Q Consensus       468 ~~v~~i~~spd~~~l~~~~~d---g~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~----  539 (744)
                      ..-+.+.|||.+++++.++-|   |.|.+||....-. ...+.+             ...+-+.|||||+++.+..    
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-------------~n~s~~~wspd~qF~~~~~ts~k  382 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-------------LNTSYCDWSPDGQFYDTDTTSEK  382 (561)
T ss_pred             cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-------------CCceEeeccCCceEEEecCCCcc
Confidence            144577899999999987654   7899999875433 335554             2345567999999987764    


Q ss_pred             --CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581          540 --CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN  586 (744)
Q Consensus       540 --~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~  586 (744)
                        .|..|.|||+.....         ...+.+.|.| .+++.-+.+.+.
T Consensus       383 ~~~Dn~i~l~~v~g~~~---------fel~~~~W~p-~~~~~ttsSs~~  421 (561)
T COG5354         383 LRVDNSIKLWDVYGAKV---------FELTNITWDP-SGQYVTTSSSCP  421 (561)
T ss_pred             cccCcceEEEEecCchh---------hhhhhccccC-CcccceeeccCC
Confidence              367899999876543         1456788988 777766665554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=3.7e-10  Score=116.12  Aligned_cols=219  Identities=16%  Similarity=0.186  Sum_probs=129.7

Q ss_pred             cccceeecCCeEE--E--EE-eCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc-
Q 004581          364 LVHNTIFSHTSLL--L--VQ-YSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD-  437 (744)
Q Consensus       364 ~v~~~~~s~~~~~--l--~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~-  437 (744)
                      ......|+|||..  +  ++ .++.-.||.+....+.           .+.+..+    .......+|||||+.|+... 
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-----------~~~lt~~----~g~~~~p~wSPDG~~Laf~s~  250 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-----------GKKILAL----QGNQLMPTFSPRKKLLAFISD  250 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-----------ceEeecC----CCCccceEECCCCCEEEEEEC
Confidence            3456789999753  2  22 2334455655544322           1122221    23345678999999988853 


Q ss_pred             -CC--ceEE--EEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CCcEEEE--EccC-CceeeeeccC
Q 004581          438 -HV--KPSL--FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIYVV--DVSS-SELLHTFTPC  508 (744)
Q Consensus       438 -~~--~v~l--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~v~--d~~~-~~~~~~~~~~  508 (744)
                       .+  .+.+  |++..+..+...     .............+|||||+.|+..+. +|...+|  ++.. +.....+.. 
T Consensus       251 ~~g~~di~~~~~~~~~g~~g~~~-----~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-  324 (428)
T PRK01029        251 RYGNPDLFIQSFSLETGAIGKPR-----RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-  324 (428)
T ss_pred             CCCCcceeEEEeecccCCCCcce-----EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-
Confidence             22  2333  444321111110     011111123457899999998887764 5644444  4432 233344443 


Q ss_pred             cccccccCCCCCCceEEEEECCCCCEEEEEeCC---CcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEec-
Q 004581          509 REEHDREIQPSEPPITKMFTSSDGQWLAAVNCF---GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTS-  584 (744)
Q Consensus       509 ~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~-  584 (744)
                                +...+....|||||++|+..+.+   ..|++||+++++.......  ...+....|+| |+++|+.... 
T Consensus       325 ----------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~~p~wSp-DG~~L~f~~~~  391 (428)
T PRK01029        325 ----------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--PENKESPSWAI-DSLHLVYSAGN  391 (428)
T ss_pred             ----------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--CCCccceEECC-CCCEEEEEECC
Confidence                      34567788999999999877543   3699999999876543322  23567889999 9998876544 


Q ss_pred             --CCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCC
Q 004581          585 --SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       585 --d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspd  628 (744)
                        ...|+++|+.+++...            +....+.+...+|+|-
T Consensus       392 ~g~~~L~~vdl~~g~~~~------------Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        392 SNESELYLISLITKKTRK------------IVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CCCceEEEEECCCCCEEE------------eecCCCcccCceecCC
Confidence              3479999998886422            3334456677888875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=2.9e-10  Score=118.96  Aligned_cols=174  Identities=14%  Similarity=0.118  Sum_probs=119.5

Q ss_pred             CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581           15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV   94 (744)
Q Consensus        15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (744)
                      ..|.++|... ...+.+..+...+.+.+|+|||+                                              
T Consensus       170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~----------------------------------------------  202 (417)
T TIGR02800       170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQ----------------------------------------------  202 (417)
T ss_pred             ceEEEEcCCC-CCCEEeecCCCceecccCCCCCC----------------------------------------------
Confidence            3688888754 44455555777899999999995                                              


Q ss_pred             ccCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCC--eEEEEEccCCceEEEE
Q 004581           95 VEDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDG--YIRSWDAKLGYEIYRI  168 (744)
Q Consensus        95 ~~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg--~i~vwd~~~~~~~~~~  168 (744)
                          +||.++.   ...|++||+.++..    ..+..+.+.+.+++|+|||+.|+.. +.++  .|.+||+.++... .+
T Consensus       203 ----~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l  273 (417)
T TIGR02800       203 ----KLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RL  273 (417)
T ss_pred             ----EEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-EC
Confidence                4444433   35899999986544    2333455667789999999977644 4443  5899999877543 33


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCC-
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-  243 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-  243 (744)
                      .        .+........|+||| +|+..+ ..+  .|.++|+.+++. ..+..+...+...+|+|+|++++.++.++ 
T Consensus       274 ~--------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~  344 (417)
T TIGR02800       274 T--------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGG  344 (417)
T ss_pred             C--------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCC
Confidence            2        233334566899999 565544 333  577888876654 44554566778899999999999887765 


Q ss_pred             --eEEEEEcccC
Q 004581          244 --QVILYKASCE  253 (744)
Q Consensus       244 --~i~iw~~~~~  253 (744)
                        .|.+|++.++
T Consensus       345 ~~~i~~~d~~~~  356 (417)
T TIGR02800       345 GFNIAVMDLDGG  356 (417)
T ss_pred             ceEEEEEeCCCC
Confidence              7888887664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=6e-12  Score=121.45  Aligned_cols=154  Identities=19%  Similarity=0.236  Sum_probs=116.5

Q ss_pred             ccCCeEEEEecCCeEEEEEecC-CCce---eEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEe
Q 004581           95 VEDRRVALACDDGCVRIYRITD-SDEL---IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV  170 (744)
Q Consensus        95 ~~~~~la~~~~dg~i~iwd~~~-~~~~---~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~  170 (744)
                      .+.+.+++++.|++|++|.+.. +...   .+..++..|+.+|.++.|-.+-++++++  ||-|++||.--|+.+..+..
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d  822 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED  822 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence            3446899999999999999972 2222   2447788999999999999998888865  78999999888887765543


Q ss_pred             cCCCCCCCCceeEEEEEEecCC-eEEEE-cCCCCEEEEeCCCcceEEEeecc-----ccceeEEEEcCCCCEEEeecCCC
Q 004581          171 GLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSRHGTLLQAHSFH-----KGDVNALAAAPSHNRVFSTGSDG  243 (744)
Q Consensus       171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~~~~~dg  243 (744)
                      ...   .+..+.|.++.-. +. .+++| +...+|+++|.+.++....++..     .+-+.+++..+.|+.++++-.+|
T Consensus       823 apk---~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG  898 (1034)
T KOG4190|consen  823 APK---EGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG  898 (1034)
T ss_pred             Ccc---cCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC
Confidence            211   1233344443221 23 44444 77899999999998888777643     45689999999999999999999


Q ss_pred             eEEEEEcccCc
Q 004581          244 QVILYKASCES  254 (744)
Q Consensus       244 ~i~iw~~~~~~  254 (744)
                      .|.+.|.+++.
T Consensus       899 ci~~LDaR~G~  909 (1034)
T KOG4190|consen  899 CIAILDARNGK  909 (1034)
T ss_pred             cEEEEecCCCc
Confidence            99999999887

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.33  E-value=1.1e-08  Score=99.56  Aligned_cols=236  Identities=10%  Similarity=0.096  Sum_probs=141.8

Q ss_pred             CCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEe----CCeEEEEEeeccCCcccCCCCCCCCCcc
Q 004581          333 DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQY----SCRLDILSVRLENNVESRSSSGGHASTS  408 (744)
Q Consensus       333 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~  408 (744)
                      .+..|.+||..+.+..........|..........++++|||+++...    .+.+.+.++....               
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k---------------  139 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA---------------  139 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---------------
Confidence            578999999998876655544333332233455578999999877743    3478888887665               


Q ss_pred             eEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccC-Cc-ccccccEEEEee-CCCEEEEE
Q 004581          409 LLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQL-PR-KLQFAHSMIFSY-DSSQLIIA  485 (744)
Q Consensus       409 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~i~~sp-d~~~l~~~  485 (744)
                      .+.++..+....+.   .+++..+.+.+.|+......+.. ++...   .....+ .. ...-...-.|++ ||+++.+.
T Consensus       140 vv~ei~vp~~~~vy---~t~e~~~~~~~~Dg~~~~v~~d~-~g~~~---~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       140 FVRMMDVPDCYHIF---PTANDTFFMHCRDGSLAKVGYGT-KGNPK---IKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EEEEEeCCCCcEEE---EecCCccEEEeecCceEEEEecC-CCceE---EeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            55556554322221   12222333334444444433332 11111   111111 00 000000014566 88888777


Q ss_pred             eCCCcEEEEEccCC-----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe----------CCCcEEEEECC
Q 004581          486 GHDRRIYVVDVSSS-----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN----------CFGDVYIFNLE  550 (744)
Q Consensus       486 ~~dg~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~----------~dg~i~iwd~~  550 (744)
                      .+ |+|++.|+...     +....+...    +....-..+.+.-++++|+++.+.+..          ..+.|.++|..
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~----~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~  287 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEA----EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK  287 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeecccc----ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence            76 99999996432     222222210    000011233445599999999888743          22579999999


Q ss_pred             CcceEEEEecCCCCceeEEeecCCCCC-eEEEEe-cCCeEEEEEcCCCcc
Q 004581          551 IQRQHWFISRLEGASVTAAGFPPQNNN-VLIITT-SSNQVYVFDVEAKQL  598 (744)
Q Consensus       551 ~~~~~~~~~~~~~~~v~~l~~sp~~~~-~l~~~~-~d~~v~vwd~~~~~~  598 (744)
                      +.+....++..+  .+..++++| |++ +|++.. .++.|.++|+.+++.
T Consensus       288 t~kvi~~i~vG~--~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       288 TGKRLRKIELGH--EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             CCeEEEEEeCCC--ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            999988887644  899999999 888 777776 578899999999964

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.32  E-value=3.6e-10  Score=103.17  Aligned_cols=120  Identities=19%  Similarity=0.122  Sum_probs=94.8

Q ss_pred             eeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEE-ccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEE
Q 004581          120 LIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD-AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA  197 (744)
Q Consensus       120 ~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~  197 (744)
                      ..+.+.++||.+.|+....-|-..-+++.+.|.++|||- .+.|+.-..+..       ....++.++.+.++. .|+.|
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------~mP~~~~~~~y~~e~~~L~vg   86 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------YMPSPCSAMEYVSESRRLYVG   86 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-------hCCCCceEeeeeccceEEEEE
Confidence            334488899999999999988888999999999999994 334554444432       356778899999888 78888


Q ss_pred             cCCCCEEEEeCC----CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEE
Q 004581          198 DSTGSVQFWDSR----HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       198 ~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                      -..|++.-+.+.    ....++....|...|..+-|+.....+++.+.|..+.
T Consensus        87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~  139 (404)
T KOG1409|consen   87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA  139 (404)
T ss_pred             EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence            889998887654    3445567778999999999998888999998887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.30  E-value=3.2e-09  Score=109.03  Aligned_cols=306  Identities=14%  Similarity=0.151  Sum_probs=178.2

Q ss_pred             cCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581           96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (744)
                      .+..+++++.+|.|.-+|..+++.+-. ..+..  ....+++.  ++..++.++.++.+..+|.++|+.+.+...     
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~-~~~~~--~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-----  133 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWR-VDLDE--RLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL-----  133 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeee-ecCCC--CcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc-----
Confidence            356888999999999999887776532 12222  11112222  567888888999999999999999887763     


Q ss_pred             CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccce-----eEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581          176 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV-----NALAAAPSHNRVFSTGSDGQVILYKA  250 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~l~~~~~dg~i~iw~~  250 (744)
                          ...+.+.-...++.++.++.++.|..||.++|+.+..+......+     .+..+.  +..++.+..+|.+..+|.
T Consensus       134 ----~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       134 ----SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDL  207 (377)
T ss_pred             ----CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEc
Confidence                122222112235578888889999999999999887766433221     111222  246788888999999998


Q ss_pred             ccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee-eeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEE
Q 004581          251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT-VAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLI  329 (744)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~  329 (744)
                      .++..             .|........-...+..+. +.       ..|                      .-.+..++
T Consensus       208 ~tG~~-------------~W~~~~~~~~g~~~~~~~~~~~-------~~p----------------------~~~~~~vy  245 (377)
T TIGR03300       208 QTGQP-------------LWEQRVALPKGRTELERLVDVD-------GDP----------------------VVDGGQVY  245 (377)
T ss_pred             cCCCE-------------eeeeccccCCCCCchhhhhccC-------Ccc----------------------EEECCEEE
Confidence            87752             2321100000000000000 00       000                      00122667


Q ss_pred             EecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcce
Q 004581          330 SAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSL  409 (744)
Q Consensus       330 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  409 (744)
                      .++.++.++.+|..+.+.                                      +|......                
T Consensus       246 ~~~~~g~l~a~d~~tG~~--------------------------------------~W~~~~~~----------------  271 (377)
T TIGR03300       246 AVSYQGRVAALDLRSGRV--------------------------------------LWKRDASS----------------  271 (377)
T ss_pred             EEEcCCEEEEEECCCCcE--------------------------------------EEeeccCC----------------
Confidence            777788888888764321                                      23222100                


Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC
Q 004581          410 LVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR  489 (744)
Q Consensus       410 ~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg  489 (744)
                                 ....++ .++.+++.+.++.+..++...   +..+|....  +...  .......  .+.+|++++.+|
T Consensus       272 -----------~~~p~~-~~~~vyv~~~~G~l~~~d~~t---G~~~W~~~~--~~~~--~~ssp~i--~g~~l~~~~~~G  330 (377)
T TIGR03300       272 -----------YQGPAV-DDNRLYVTDADGVVVALDRRS---GSELWKNDE--LKYR--QLTAPAV--VGGYLVVGDFEG  330 (377)
T ss_pred             -----------ccCceE-eCCEEEEECCCCeEEEEECCC---CcEEEcccc--ccCC--ccccCEE--ECCEEEEEeCCC
Confidence                       001111 133334445678888888754   445665432  1111  1112222  467889999999


Q ss_pred             cEEEEEccCCceeeeeccCcccccccCCCCCCce-EEEEECCCCCEEEEEeCCCcEEEE
Q 004581          490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI-TKMFTSSDGQWLAAVNCFGDVYIF  547 (744)
Q Consensus       490 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~spdg~~las~~~dg~i~iw  547 (744)
                      .|+++|..+|+.+.++..           +...+ .+..+. ++ .|+.++.||.|+.|
T Consensus       331 ~l~~~d~~tG~~~~~~~~-----------~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       331 YLHWLSREDGSFVARLKT-----------DGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEECCCCCEEEEEEc-----------CCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            999999999999988875           33332 222332 33 57788899988875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=3.5e-10  Score=111.18  Aligned_cols=168  Identities=17%  Similarity=0.220  Sum_probs=139.3

Q ss_pred             CCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEe------c--------------CCCEEEEEeCCCeEEE
Q 004581           97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS------A--------------DGNMLYSGSSDGYIRS  156 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s------~--------------dg~~l~t~~~dg~i~v  156 (744)
                      ..++|....||.++||+...++..+-......-.+..++..|.      |              |-..++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            3699999999999999998665432212222234445555552      3              3346777888999999


Q ss_pred             EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR  235 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  235 (744)
                      |++..|+...++...      .|...|.++.++.+- .|.+++.|+.+..|+..++..++.+......+.+++++|||..
T Consensus        85 ys~~~g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~  158 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI  158 (541)
T ss_pred             EEecCCeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE
Confidence            999999999998853      799999999988766 8999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581          236 VFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA  289 (744)
Q Consensus       236 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  289 (744)
                      +++|+  +.|++|++++.+                 .+..+.+|..+|+++.|.
T Consensus       159 l~~as--~~ik~~~~~~ke-----------------vv~~ftgh~s~v~t~~f~  193 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKE-----------------VVITFTGHGSPVRTLSFT  193 (541)
T ss_pred             EEecc--ceEEEEEccCce-----------------EEEEecCCCcceEEEEEE
Confidence            99986  789999999987                 488999999999999996

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=3.6e-10  Score=118.25  Aligned_cols=177  Identities=20%  Similarity=0.144  Sum_probs=121.1

Q ss_pred             CCCCCCeeEEecCC---CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            1 MGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         1 ~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      |+++|.+|+.+..+   ..|.+||+.+++... +..+.+.+.+++|+|||+                             
T Consensus       197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~-----------------------------  246 (417)
T TIGR02800       197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS-----------------------------  246 (417)
T ss_pred             CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-----------------------------
Confidence            67888888876543   589999999886544 334566778899999995                             


Q ss_pred             ccCCCCCCcccccccccccCCeEE-EEecCC--eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-C-
Q 004581           78 SESENDSDSDELHEQSVVEDRRVA-LACDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-G-  152 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la-~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-g-  152 (744)
                                           .|+ +.+.++  .|++||+.++..    ..+..+.......+|+|||+.|+..+.. + 
T Consensus       247 ---------------------~l~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~  301 (417)
T TIGR02800       247 ---------------------KLAVSLSKDGNPDIYVMDLDGKQL----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGS  301 (417)
T ss_pred             ---------------------EEEEEECCCCCccEEEEECCCCCE----EECCCCCCCCCCEEECCCCCEEEEEECCCCC
Confidence                                 333 334333  588888875443    3444555556678999999988876643 3 


Q ss_pred             -eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC---CEEEEeCCCcceEEEeeccccceeEE
Q 004581          153 -YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG---SVQFWDSRHGTLLQAHSFHKGDVNAL  227 (744)
Q Consensus       153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~l  227 (744)
                       .|.++|+.+++.. .+.        .+...+..+.|+|+| +++.++.++   .|.+||+.++.. ..+... ......
T Consensus       302 ~~iy~~d~~~~~~~-~l~--------~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p  370 (417)
T TIGR02800       302 PQIYMMDADGGEVR-RLT--------FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESP  370 (417)
T ss_pred             ceEEEEECCCCCEE-Eee--------cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCc
Confidence             6888888776643 343        233456678899999 666666655   788999987544 333322 234567


Q ss_pred             EEcCCCCEEEeecCCC
Q 004581          228 AAAPSHNRVFSTGSDG  243 (744)
Q Consensus       228 ~~~~~~~~l~~~~~dg  243 (744)
                      .|+|+|++|+.++.++
T Consensus       371 ~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       371 SFAPNGRMILYATTRG  386 (417)
T ss_pred             eECCCCCEEEEEEeCC
Confidence            8999999888876654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.5e-09  Score=113.46  Aligned_cols=174  Identities=17%  Similarity=0.114  Sum_probs=114.4

Q ss_pred             eEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCcccccccccc
Q 004581           16 SVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV   95 (744)
Q Consensus        16 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (744)
                      .|.++|...+. .+.+..+...+.+.+|||||+                                               
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~-----------------------------------------------  211 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK-----------------------------------------------  211 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCC-----------------------------------------------
Confidence            58888887554 455556778899999999995                                               


Q ss_pred             cCCeEEEEec---CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEE-EeCCC--eEEEEEccCCceEEEEE
Q 004581           96 EDRRVALACD---DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYS-GSSDG--YIRSWDAKLGYEIYRIT  169 (744)
Q Consensus        96 ~~~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t-~~~dg--~i~vwd~~~~~~~~~~~  169 (744)
                         .||..+.   ...|.+||+.+++.    +.+....+.+...+|+|||+.|+. .+.+|  .|.+||+.+++.. .+.
T Consensus       212 ---~la~~s~~~~~~~l~~~~l~~g~~----~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt  283 (430)
T PRK00178        212 ---RIAYVSFEQKRPRIFVQNLDTGRR----EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT  283 (430)
T ss_pred             ---EEEEEEcCCCCCEEEEEECCCCCE----EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc
Confidence               4544432   24689999976654    223333345567899999998874 44444  6888899887643 343


Q ss_pred             ecCCCCCCCCceeEEEEEEecCC-eEEEE-cCCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC-C-
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD-G-  243 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d-g-  243 (744)
                              .+........|+||| .|+.. ..+|  .|.++|+.+++... +..........+|+|+|+.|+..+.+ + 
T Consensus       284 --------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~  354 (430)
T PRK00178        284 --------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGN  354 (430)
T ss_pred             --------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCc
Confidence                    233445667899999 55444 3444  47777887776433 32222334467899999998876543 3 


Q ss_pred             -eEEEEEcccCc
Q 004581          244 -QVILYKASCES  254 (744)
Q Consensus       244 -~i~iw~~~~~~  254 (744)
                       .|.++|+.++.
T Consensus       355 ~~l~~~dl~tg~  366 (430)
T PRK00178        355 FHVAAQDLQRGS  366 (430)
T ss_pred             eEEEEEECCCCC
Confidence             47778877654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=8.8e-10  Score=113.38  Aligned_cols=181  Identities=13%  Similarity=0.042  Sum_probs=112.6

Q ss_pred             CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccccccc
Q 004581           15 GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSV   94 (744)
Q Consensus        15 ~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (744)
                      ..|.+.|...+.. +.+......+.+-+|||||+.++                                           
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~-------------------------------------------  200 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFP-------------------------------------------  200 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceE-------------------------------------------
Confidence            4677888765544 44555566778889999996542                                           


Q ss_pred             ccCCeEEEEecC--CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-----CCeEEEEEccCC--ceE
Q 004581           95 VEDRRVALACDD--GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----DGYIRSWDAKLG--YEI  165 (744)
Q Consensus        95 ~~~~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----dg~i~vwd~~~~--~~~  165 (744)
                          ++++...+  ..|.+.++.+++..    .+....+.....+|||||+.|+..+.     +..+..|++.++  ...
T Consensus       201 ----~~y~S~~~g~~~I~~~~l~~g~~~----~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~  272 (428)
T PRK01029        201 ----YLYVSYKLGVPKIFLGSLENPAGK----KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKP  272 (428)
T ss_pred             ----EEEEEccCCCceEEEEECCCCCce----EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcc
Confidence                22233333  45777788755442    22233444567899999999887653     234455777653  223


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC-eEEEE-cCCCCEEEE--eCCC-cceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-DSTGSVQFW--DSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTG  240 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~vw--d~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~  240 (744)
                      ..+..       ..........|+||| .|+.. ..+|...+|  ++.. +.....+..+...+...+|+|||+.|+..+
T Consensus       273 ~~lt~-------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        273 RRLLN-------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             eEeec-------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence            33331       122334567999999 55544 456655555  4432 333445555556778899999999888764


Q ss_pred             CC---CeEEEEEcccCc
Q 004581          241 SD---GQVILYKASCES  254 (744)
Q Consensus       241 ~d---g~i~iw~~~~~~  254 (744)
                      .+   ..|.+||+.++.
T Consensus       346 ~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        346 VIKGVRQICVYDLATGR  362 (428)
T ss_pred             cCCCCcEEEEEECCCCC
Confidence            43   468899987765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.24  E-value=4.7e-10  Score=100.79  Aligned_cols=180  Identities=12%  Similarity=0.154  Sum_probs=126.9

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCC-CEEEEEeCCCcEEE
Q 004581          415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDS-SQLIIAGHDRRIYV  493 (744)
Q Consensus       415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~-~~l~~~~~dg~i~v  493 (744)
                      ..|...|.++++..|.+.+.++.+-.|.+|++...++...+.+++...+.....-|++..|+|.. ..+...+..|.|++
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            45667899999999999999999999999999988888888777766655555578899999954 45566677899999


Q ss_pred             EEccCCcee----eeeccCc-ccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc-eEEEEecC------
Q 004581          494 VDVSSSELL----HTFTPCR-EEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR-QHWFISRL------  561 (744)
Q Consensus       494 ~d~~~~~~~----~~~~~~~-~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~~------  561 (744)
                      -|+....+.    ..+.... +........-...|..+.|+++|+|+++-+.- +|+|||++..+ ++.+++.+      
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~  327 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDE  327 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHH
Confidence            999633211    1111000 00000011134678899999999999998765 69999997554 44444332      


Q ss_pred             -----CCCce---eEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          562 -----EGASV---TAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       562 -----~~~~v---~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                           ....|   ..+.||- |...+++|+..+..-+|-+.+.
T Consensus       328 l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         328 LNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             HHhhhhccceeeeEEEEecC-CcccccccccccceeeeccccC
Confidence                 11233   3478888 8888999999998888875544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=5.4e-09  Score=108.59  Aligned_cols=171  Identities=18%  Similarity=0.230  Sum_probs=103.8

Q ss_pred             EEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CC--cEEEEEc
Q 004581          422 ICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--RIYVVDV  496 (744)
Q Consensus       422 ~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg--~i~v~d~  496 (744)
                      ...+|+|||+.|++.  .++...||.++...+  ..     ..+..+.......+|+|||++|+..+. ++  .|+++|+
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg--~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl  337 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATK--AL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL  337 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCC--Ce-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            356799999988763  455544554433111  11     122223334567899999999887654 33  5777787


Q ss_pred             cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC-C--cEEEEECCCcceEEEEecCCCCceeEEeecC
Q 004581          497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-G--DVYIFNLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      .+++..+. ..           ........+|||||++|+..+.+ +  .|.++|+++++... +...  .......|+|
T Consensus       338 ~~g~~~~L-t~-----------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~sp  402 (448)
T PRK04792        338 ASGKVSRL-TF-----------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAP  402 (448)
T ss_pred             CCCCEEEE-ec-----------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECC
Confidence            77764332 21           12223456899999999887653 3  46677888876533 2221  1223457999


Q ss_pred             CCCCeEEEEecCC---eEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCC
Q 004581          574 QNNNVLIITTSSN---QVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP  627 (744)
Q Consensus       574 ~~~~~l~~~~~d~---~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp  627 (744)
                       |+++|+.++.++   .+++++.+++.            ...+....+.+...+|+|
T Consensus       403 -dG~~I~~~~~~~g~~~l~~~~~~G~~------------~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        403 -NGTMVIYSTTYQGKQVLAAVSIDGRF------------KARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             -CCCEEEEEEecCCceEEEEEECCCCc------------eEECcCCCCCcCCCccCC
Confidence             999888776543   47778876553            222333445677788887

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1e-09  Score=113.85  Aligned_cols=186  Identities=17%  Similarity=0.184  Sum_probs=115.9

Q ss_pred             CCCCCCeeEEecC---CCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            1 MGLPGGRLFSSSI---DGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         1 ~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      |+|+|.+|+..+.   ...|.+||+.+++... +....+.....+|+|||+                             
T Consensus       225 wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~-----------------------------  274 (448)
T PRK04792        225 WSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK-----------------------------  274 (448)
T ss_pred             ECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC-----------------------------
Confidence            6788888877643   2368999998877543 222234455789999995                             


Q ss_pred             ccCCCCCCcccccccccccCCeEE-EEecCCe--EEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CC-
Q 004581           78 SESENDSDSDELHEQSVVEDRRVA-LACDDGC--VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DG-  152 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la-~~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg-  152 (744)
                                           .|| +.+.+|.  |+++|+.+++ .   ..+..+.......+|+|||+.|+..+. ++ 
T Consensus       275 ---------------------~La~~~~~~g~~~Iy~~dl~tg~-~---~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~  329 (448)
T PRK04792        275 ---------------------KLALVLSKDGQPEIYVVDIATKA-L---TRITRHRAIDTEPSWHPDGKSLIFTSERGGK  329 (448)
T ss_pred             ---------------------EEEEEEeCCCCeEEEEEECCCCC-e---EECccCCCCccceEECCCCCEEEEEECCCCC
Confidence                                 343 3455564  7777776544 3   445556666788999999998877654 33 


Q ss_pred             -eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEE
Q 004581          153 -YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNAL  227 (744)
Q Consensus       153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l  227 (744)
                       .|.++|+.+++.. .+..        .........|+||| +|+..+ .++  .|.++|+.+++.. .+.... .....
T Consensus       330 ~~Iy~~dl~~g~~~-~Lt~--------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~p  398 (448)
T PRK04792        330 PQIYRVNLASGKVS-RLTF--------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESP  398 (448)
T ss_pred             ceEEEEECCCCCEE-EEec--------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCc
Confidence             5777788777643 3331        11122346899999 554443 344  3556788877643 333221 22345


Q ss_pred             EEcCCCCEEEeecC-CCe--EEEEEccc
Q 004581          228 AAAPSHNRVFSTGS-DGQ--VILYKASC  252 (744)
Q Consensus       228 ~~~~~~~~l~~~~~-dg~--i~iw~~~~  252 (744)
                      .|+|||+.|+..+. ++.  +.+++...
T Consensus       399 s~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        399 SVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCC
Confidence            89999998876554 333  55666543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=2.2e-09  Score=112.21  Aligned_cols=186  Identities=17%  Similarity=0.146  Sum_probs=120.1

Q ss_pred             CCCCCCeeEEecCC---CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcC
Q 004581            1 MGLPGGRLFSSSID---GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHET   77 (744)
Q Consensus         1 ~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (744)
                      |+|+|.+|+..+.+   ..|.+||+.+++... +....+.+.+.+|+|||+                             
T Consensus       206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-----------------------------  255 (430)
T PRK00178        206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-----------------------------  255 (430)
T ss_pred             ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC-----------------------------
Confidence            67888888776533   479999999886644 333345566799999995                             


Q ss_pred             ccCCCCCCcccccccccccCCeEE-EEecCC--eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-C--
Q 004581           78 SESENDSDSDELHEQSVVEDRRVA-LACDDG--CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-D--  151 (744)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~la-~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-d--  151 (744)
                                           .|+ +...+|  .|++||+.++..    +.+..+........|+|||+.|+..+. +  
T Consensus       256 ---------------------~la~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~  310 (430)
T PRK00178        256 ---------------------KLAFVLSKDGNPEIYVMDLASRQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK  310 (430)
T ss_pred             ---------------------EEEEEEccCCCceEEEEECCCCCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCC
Confidence                                 443 333344  688888875543    345556666778899999998877654 3  


Q ss_pred             CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC-CC--CEEEEeCCCcceEEEeeccccceeEE
Q 004581          152 GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TG--SVQFWDSRHGTLLQAHSFHKGDVNAL  227 (744)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg--~i~vwd~~~~~~~~~~~~h~~~v~~l  227 (744)
                      ..|.++|+.+++.. .+..        .........|+||| .|+.... ++  .|.+||+.+++.. .+.. .......
T Consensus       311 ~~iy~~d~~~g~~~-~lt~--------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p  379 (430)
T PRK00178        311 PQIYKVNVNGGRAE-RVTF--------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESP  379 (430)
T ss_pred             ceEEEEECCCCCEE-Eeec--------CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCc
Confidence            35888888777643 3331        11223356899999 5554443 33  4888999877643 3332 2223356


Q ss_pred             EEcCCCCEEEeecCC-C--eEEEEEccc
Q 004581          228 AAAPSHNRVFSTGSD-G--QVILYKASC  252 (744)
Q Consensus       228 ~~~~~~~~l~~~~~d-g--~i~iw~~~~  252 (744)
                      .|+|||+.++..+.+ +  .+.+++...
T Consensus       380 ~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        380 SVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCC
Confidence            899999988876543 3  455666544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.20  E-value=1.2e-08  Score=91.54  Aligned_cols=231  Identities=15%  Similarity=0.108  Sum_probs=149.2

Q ss_pred             cCCeEEEEEecCCCceeEeecccCccCcEEEEEEec---CCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCc
Q 004581          105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA---DGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE  180 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~---dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (744)
                      .-|.+.+|++.+.+..........-...+..+.|.-   +|. .|+-+-.+|.|.++....-.....+.. ..... -..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~-ls~~k-i~~  121 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG-LSSKK-ISV  121 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc-cchhh-hhh
Confidence            346789999975544331112222345677777763   555 566677789999998654444444431 11100 111


Q ss_pred             eeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceE--EEeeccccceeEEEEcCC-CCEEEeecCCCeEEEEEcccCcCC
Q 004581          181 LCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL--QAHSFHKGDVNALAAAPS-HNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       181 ~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      ....++.|++.+ .++++..+|.+.+-+.......  ++++.|..+.....|+.. .+.+++||.|+.+..||++...  
T Consensus       122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--  199 (339)
T KOG0280|consen  122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--  199 (339)
T ss_pred             eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--
Confidence            235677888888 8999999999996666555443  488999999999999864 4688999999999999998322  


Q ss_pred             CCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCe
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                  .|. -...+.|...|.++.-++                                +.+.++++|+.|..
T Consensus       200 ------------~~i-~~n~kvH~~GV~SI~ss~--------------------------------~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  200 ------------TFI-WHNSKVHTSGVVSIYSSP--------------------------------PKPTYIATGSYDEC  234 (339)
T ss_pred             ------------cee-eecceeeecceEEEecCC--------------------------------CCCceEEEeccccc
Confidence                        111 123567888899988762                                23349999999999


Q ss_pred             EEEEecCccCCCCCcccCCCCCCCccccccceeecCCeE---EEEEeCCeEEEEEeec
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSL---LLVQYSCRLDILSVRL  391 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~i~i~~~~~  391 (744)
                      |++||.++..+.       .......+.|+.+..+|.-.   +.++--+..+|.++..
T Consensus       235 i~~~DtRnm~kP-------l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  235 IRVLDTRNMGKP-------LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             eeeeehhcccCc-------cccCccccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence            999999865432       11222336777777777433   2223334455555443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.14  E-value=1.5e-07  Score=96.88  Aligned_cols=320  Identities=15%  Similarity=0.179  Sum_probs=180.6

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEEecCCC-CCCCC-ceeEEE-EEEecCCeEEEEcCCCCEEEEeCCCcceEEEee
Q 004581          142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG-LGSGP-ELCIWS-LLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHS  218 (744)
Q Consensus       142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~-~~~v~~-~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  218 (744)
                      +..+++++.++.+..+|.++|+.+.+....... ..... ...+.+ +. ..++.++.++.+|.+..+|.++|+.+.+..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT-VAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE-EECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            567888888899999999999999887642100 00000 001111 11 124578888899999999999999988776


Q ss_pred             ccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeee-eeccCCCCCC
Q 004581          219 FHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT-VAVPISREDP  297 (744)
Q Consensus       219 ~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~~~  297 (744)
                      .......+....  +..++.+..++.+..+|..+++             ..|.....     .+...+. .+.       
T Consensus       148 ~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~-------------~~W~~~~~-----~~~~~~~~~~s-------  200 (394)
T PRK11138        148 VAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGA-------------VKWTVNLD-----VPSLTLRGESA-------  200 (394)
T ss_pred             CCCceecCCEEE--CCEEEEECCCCEEEEEEccCCC-------------EeeeecCC-----CCcccccCCCC-------
Confidence            533211112222  4467778889999999998877             23433111     0000000 000       


Q ss_pred             CCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEE
Q 004581          298 LPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLL  377 (744)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  377 (744)
                       |--                      ....++.++.++.+..++..+.+.....                          
T Consensus       201 -P~v----------------------~~~~v~~~~~~g~v~a~d~~~G~~~W~~--------------------------  231 (394)
T PRK11138        201 -PAT----------------------AFGGAIVGGDNGRVSAVLMEQGQLIWQQ--------------------------  231 (394)
T ss_pred             -CEE----------------------ECCEEEEEcCCCEEEEEEccCChhhhee--------------------------
Confidence             000                      0114666777888888887664432211                          


Q ss_pred             EEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEE
Q 004581          378 VQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWI  457 (744)
Q Consensus       378 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~  457 (744)
                                  .......      ..    .+.++......++    + .++.+++.+.++.+..++..+   +..+|.
T Consensus       232 ------------~~~~~~~------~~----~~~~~~~~~~sP~----v-~~~~vy~~~~~g~l~ald~~t---G~~~W~  281 (394)
T PRK11138        232 ------------RISQPTG------AT----EIDRLVDVDTTPV----V-VGGVVYALAYNGNLVALDLRS---GQIVWK  281 (394)
T ss_pred             ------------ccccCCC------cc----chhcccccCCCcE----E-ECCEEEEEEcCCeEEEEECCC---CCEEEe
Confidence                        1000000      00    0000000000111    1 144445556677777777754   556776


Q ss_pred             eeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE
Q 004581          458 INKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA  537 (744)
Q Consensus       458 ~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las  537 (744)
                      .....       ...+.  .++..|+.++.+|.+..+|..+|+.+-.....          ......+..+  .+.+|+.
T Consensus       282 ~~~~~-------~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----------~~~~~~sp~v--~~g~l~v  340 (394)
T PRK11138        282 REYGS-------VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL----------LHRLLTAPVL--YNGYLVV  340 (394)
T ss_pred             ecCCC-------ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc----------CCCcccCCEE--ECCEEEE
Confidence            43211       11222  35678888888999999999999876543320          0111122222  2557888


Q ss_pred             EeCCCcEEEEECCCcceEEEEecCCCCcee-EEeecCCCCCeEEEEecCCeEEEEEc
Q 004581          538 VNCFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       538 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~l~~~~~d~~v~vwd~  593 (744)
                      ++.+|.|++.|.++++.++....... .+. ...+.   +..|++++.||.|+.++.
T Consensus       341 ~~~~G~l~~ld~~tG~~~~~~~~~~~-~~~s~P~~~---~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        341 GDSEGYLHWINREDGRFVAQQKVDSS-GFLSEPVVA---DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEcCCC-cceeCCEEE---CCEEEEEeCCceEEEEeC
Confidence            89999999999999998877754222 222 22332   357889999999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=1.1e-09  Score=120.59  Aligned_cols=145  Identities=21%  Similarity=0.326  Sum_probs=114.2

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      .+.++|+.||.|++|....+..+...++.. . .+|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+        
T Consensus      2221 ~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-------- 2289 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-N-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-------- 2289 (2439)
T ss_pred             ceEEecCCCceEEEEeccCCCeEEEeeccC-c-chhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc--------
Confidence            588999999999999998777775544443 3 899999999999999999999999999985 34433333        


Q ss_pred             CCceeEEEEEEecCCeEEEE---cCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581          178 GPELCIWSLLSLRCGTLVSA---DSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~~l~s~---~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                      .|........|.. ..++++   +.++.+.+||.-- +..-.....|.+.++++++.|..+.|++||.+|.|++||++..
T Consensus      2290 chnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             cCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence            4777777777876 334443   3477899999643 2212223789999999999999999999999999999999876


Q ss_pred             c
Q 004581          254 S  254 (744)
Q Consensus       254 ~  254 (744)
                      +
T Consensus      2369 q 2369 (2439)
T KOG1064|consen 2369 Q 2369 (2439)
T ss_pred             H
Confidence            5

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=4.4e-10  Score=123.54  Aligned_cols=179  Identities=13%  Similarity=0.161  Sum_probs=144.6

Q ss_pred             CCCCeeEEecCCCeEEEEEccCCceeEEeec-cCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS-IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      |.....++|+.||.|++|....+..+..+.. -...|+.+.|+.+|                                  
T Consensus      2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG---------------------------------- 2263 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG---------------------------------- 2263 (2439)
T ss_pred             CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC----------------------------------
Confidence            4566789999999999999999888887653 23789999999999                                  


Q ss_pred             CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe---CCCeEEEEE
Q 004581           82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS---SDGYIRSWD  158 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~---~dg~i~vwd  158 (744)
                                      +.+.++..||.+.+|.+. .+..   ...+.|......+.|-.  ..+++++   .++.+.+||
T Consensus      2264 ----------------nk~~i~d~dg~l~l~q~~-pk~~---~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2264 ----------------NKFGIVDGDGDLSLWQAS-PKPY---TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred             ----------------CceeeeccCCceeecccC-Ccce---eccccCCccccceeeee--hhhhccccCCCCCcccchh
Confidence                            688899999999999996 4443   67788999999999865  6777765   368999999


Q ss_pred             ccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEE
Q 004581          159 AKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVF  237 (744)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  237 (744)
                      ..-......+..       .|...++++++.|.. .|++|+.+|.|++||++..+++++++.         +. ...+++
T Consensus      2322 tl~~~~~s~v~~-------~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2322 TLLPPMNSLVHT-------CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFV 2384 (2439)
T ss_pred             cccCcccceeee-------ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheee
Confidence            643222222222       699999999999998 899999999999999998877776664         33 467899


Q ss_pred             eecCCCeEEEEEcccCc
Q 004581          238 STGSDGQVILYKASCES  254 (744)
Q Consensus       238 ~~~~dg~i~iw~~~~~~  254 (744)
                      +|+..|.++||++....
T Consensus      2385 ~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             ccCcccceEEEEccccc
Confidence            99999999999998754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.08  E-value=1.7e-09  Score=101.38  Aligned_cols=160  Identities=13%  Similarity=0.177  Sum_probs=115.5

Q ss_pred             eEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEc---
Q 004581          421 IICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDV---  496 (744)
Q Consensus       421 i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~---  496 (744)
                      ...+..++.+++||++ .+....++++..+..+.++++...  ++.   ..+++.|-.+...+..+..-|.++-+|+   
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~---~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPK---RPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--ccc---CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            3445678889999997 444555777776444455543332  222   4556666666666666655554544444   


Q ss_pred             cCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCC
Q 004581          497 SSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN  576 (744)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~  576 (744)
                      ..+.... +-+           |-+.++.++||||++++.+++.|..|+|-.....-.+..+.-.|..-|..++.-+  +
T Consensus       140 ~~~~~~~-~lG-----------hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~  205 (390)
T KOG3914|consen  140 DSGRCEP-ILG-----------HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--N  205 (390)
T ss_pred             cccCcch-hhh-----------hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--C
Confidence            3343322 223           8999999999999999999999999999888877666677777888899999986  5


Q ss_pred             CeEEEEecCCeEEEEEcCCCccc
Q 004581          577 NVLIITTSSNQVYVFDVEAKQLG  599 (744)
Q Consensus       577 ~~l~~~~~d~~v~vwd~~~~~~~  599 (744)
                      ..|++++.|++|++||+.+|+..
T Consensus       206 ~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  206 YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             ceeeecCCCCcEEEEecccCCcc
Confidence            77999999999999999999753

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.07  E-value=3.3e-09  Score=94.98  Aligned_cols=193  Identities=17%  Similarity=0.222  Sum_probs=138.2

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeE--EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCc
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKI--VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETS   78 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (744)
                      |++.+..++++-.+|.+.+-+........  +.+.|..++|-.+|+-...                              
T Consensus       129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p------------------------------  178 (339)
T KOG0280|consen  129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP------------------------------  178 (339)
T ss_pred             eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC------------------------------
Confidence            34567778999889999877666555544  7899999999999997663                              


Q ss_pred             cCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEE
Q 004581           79 ESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSW  157 (744)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vw  157 (744)
                                         +.+.+|++|+.+.-||+...+... .+..+.|...|.++.-+| .+.+++||+.|-.|++|
T Consensus       179 -------------------nlvytGgDD~~l~~~D~R~p~~~i-~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  179 -------------------NLVYTGGDDGSLSCWDIRIPKTFI-WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             -------------------ceEEecCCCceEEEEEecCCccee-eecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence                               589999999999999998443322 244567899999998876 46799999999999999


Q ss_pred             EccC-CceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCc--c---eEEEeeccccceeEEEE
Q 004581          158 DAKL-GYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHG--T---LLQAHSFHKGDVNALAA  229 (744)
Q Consensus       158 d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~--~---~~~~~~~h~~~v~~l~~  229 (744)
                      |.++ ++++..-         ...+.||.+.++|.-  +++.++.-+-.+|-+.+.+  +   .....+.|.+-+..-.|
T Consensus       239 DtRnm~kPl~~~---------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW  309 (339)
T KOG0280|consen  239 DTRNMGKPLFKA---------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW  309 (339)
T ss_pred             ehhcccCccccC---------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccc
Confidence            9874 4554443         355889999999965  5666666666777776543  2   33455566665555556


Q ss_pred             cCCCCEEEeec-CCCeEE-EEEccc
Q 004581          230 APSHNRVFSTG-SDGQVI-LYKASC  252 (744)
Q Consensus       230 ~~~~~~l~~~~-~dg~i~-iw~~~~  252 (744)
                      ......|++++ .|+.++ +|-.-+
T Consensus       310 d~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  310 DSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ccccceeeeeeccccceeeeeeecc
Confidence            44445677764 366644 664433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.04  E-value=5.6e-07  Score=92.76  Aligned_cols=160  Identities=14%  Similarity=0.153  Sum_probs=95.8

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccC-CCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPS-NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      ++++++++.+|.|.-+|.++|+.+-..+..... .  .++.. +..                                  
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~--~~~~~~~~~----------------------------------  111 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-G--WFSKNKSAL----------------------------------  111 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-c--ccccccccc----------------------------------
Confidence            677888888888888898888887765432200 0  00000 000                                  


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEE-EEEecCCCEEEEEeCCCeEEEEEccCC
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLS-VTWSADGNMLYSGSSDGYIRSWDAKLG  162 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-~~~s~dg~~l~t~~~dg~i~vwd~~~~  162 (744)
                           ...-....+..++.++.+|.+.-+|..+++.+-.   .... +.+.+ ...  .+..++.++.++.|..+|.++|
T Consensus       112 -----~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~---~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG  180 (394)
T PRK11138        112 -----LSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ---TKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDG  180 (394)
T ss_pred             -----cccccEEECCEEEEEcCCCEEEEEECCCCCCccc---ccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence                 0000111235778888999999999988877632   2211 12221 122  2345667778899999999999


Q ss_pred             ceEEEEEecCCCC-CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEe
Q 004581          163 YEIYRITVGLGGL-GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH  217 (744)
Q Consensus       163 ~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  217 (744)
                      +.+.+........ ......++.     .++.++.++.+|.+...|.++|+.+...
T Consensus       181 ~~~W~~~~~~~~~~~~~~~sP~v-----~~~~v~~~~~~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        181 AVKWTVNLDVPSLTLRGESAPAT-----AFGGAIVGGDNGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             CEeeeecCCCCcccccCCCCCEE-----ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence            9998886421000 001111211     1456777888999999999988876554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.04  E-value=2.7e-08  Score=87.93  Aligned_cols=193  Identities=12%  Similarity=-0.017  Sum_probs=138.4

Q ss_pred             eeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCc
Q 004581            7 RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDS   86 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (744)
                      .+..++.|.++++.+++-+.....+....-.+.++++++|+                                       
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~---------------------------------------  170 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP---------------------------------------  170 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCC---------------------------------------
Confidence            46778888888888887654433332222348889999999                                       


Q ss_pred             ccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEE
Q 004581           87 DELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIY  166 (744)
Q Consensus        87 ~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~  166 (744)
                                 +++++.++...|..|.+..............-+..=.+..|+.....+|++..||++.|||++......
T Consensus       171 -----------~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  171 -----------SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             -----------ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence                       588888999999999998544433222344445566789999999999999999999999998866655


Q ss_pred             EEEecCCCCCCCCceeEEEEEEecCC---eEEEEcCCCCEEEEeCCCcceEEEeec-------cc-cceeEEEEcCCCCE
Q 004581          167 RITVGLGGLGSGPELCIWSLLSLRCG---TLVSADSTGSVQFWDSRHGTLLQAHSF-------HK-GDVNALAAAPSHNR  235 (744)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~-------h~-~~v~~l~~~~~~~~  235 (744)
                      ......+.   .|.+.+..+.|++-|   +|+..-.-+.+.+-|++++...+.+..       |. ..|....|+.++..
T Consensus       240 ~~~sstrp---~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  240 AEISSTRP---HHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             hhhcccCC---CCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence            54432222   588999999999877   566666678899999998776555432       22 34788888888877


Q ss_pred             EEeecCCCeEEEEEcccC
Q 004581          236 VFSTGSDGQVILYKASCE  253 (744)
Q Consensus       236 l~~~~~dg~i~iw~~~~~  253 (744)
                      +.+...+. +.-|++...
T Consensus       317 ~~v~~e~~-~ae~ni~sr  333 (344)
T KOG4532|consen  317 NDVKNELQ-GAEYNILSR  333 (344)
T ss_pred             cccccchh-hheeecccc
Confidence            77776543 556665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.01  E-value=6.8e-07  Score=101.96  Aligned_cols=129  Identities=12%  Similarity=0.068  Sum_probs=85.5

Q ss_pred             cccEEEEeeCCCEEEEE-eCCCcEEEEEccCCceeeeeccCcc----------cccccCCCCCCceEEEEECCCCCEEEE
Q 004581          469 FAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTFTPCRE----------EHDREIQPSEPPITKMFTSSDGQWLAA  537 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~l~~spdg~~las  537 (744)
                      ....++|+|+++.|+++ ..++.|++||+.++.......+...          .........-.....++++++|+.+++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA  820 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA  820 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence            56778888888855544 4467888888876543211100000          000000001123468999999998888


Q ss_pred             EeCCCcEEEEECCCcceEEEEecC------------CCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581          538 VNCFGDVYIFNLEIQRQHWFISRL------------EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       538 ~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                      -..++.|++||.+++.........            .-..+..+++++ +|+++++-+.++.|++||+.+++.
T Consensus       821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence            888999999999887654333211            113578899999 999888888889999999998864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=6e-08  Score=99.08  Aligned_cols=188  Identities=10%  Similarity=0.049  Sum_probs=117.5

Q ss_pred             CCCCCCe-eEEec---CCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581            1 MGLPGGR-LFSSS---IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE   76 (744)
Q Consensus         1 ~~~~~~~-l~~~~---~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (744)
                      |+|+|++ ++..+   .+..|.++|+.+++...... ..+...+.+|+|||+.++.                        
T Consensus       195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~------------------------  249 (419)
T PRK04043        195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLL------------------------  249 (419)
T ss_pred             ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEE------------------------
Confidence            6788886 55432   24679999999887665443 4566677889999965532                        


Q ss_pred             CccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-C--e
Q 004581           77 TSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-G--Y  153 (744)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-g--~  153 (744)
                                             ......+..|.++|+.++. .   +.+..+.+......|+|||+.|+..+.. +  .
T Consensus       250 -----------------------~~~~~g~~~Iy~~dl~~g~-~---~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~  302 (419)
T PRK04043        250 -----------------------TMAPKGQPDIYLYDTNTKT-L---TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN  302 (419)
T ss_pred             -----------------------EEccCCCcEEEEEECCCCc-E---EEcccCCCccCccEECCCCCEEEEEECCCCCce
Confidence                                   1111234578888876544 3   3444444434566899999988776642 2  6


Q ss_pred             EEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC---------CCEEEEeCCCcceEEEeeccccc
Q 004581          154 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---------GSVQFWDSRHGTLLQAHSFHKGD  223 (744)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d---------g~i~vwd~~~~~~~~~~~~h~~~  223 (744)
                      |.+.|+.+|+..+....       +..    ...|+||| .|+.....         ..|.+.|+.++.. ..+... ..
T Consensus       303 Iy~~dl~~g~~~rlt~~-------g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~  369 (419)
T PRK04043        303 IFMKKLNSGSVEQVVFH-------GKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GV  369 (419)
T ss_pred             EEEEECCCCCeEeCccC-------CCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CC
Confidence            88889887766433321       111    23899999 55444332         3688889887764 344433 23


Q ss_pred             eeEEEEcCCCCEEEeecCC-C--eEEEEEcccC
Q 004581          224 VNALAAAPSHNRVFSTGSD-G--QVILYKASCE  253 (744)
Q Consensus       224 v~~l~~~~~~~~l~~~~~d-g--~i~iw~~~~~  253 (744)
                      .....|+|||+.|+..+.+ +  .+.+.++...
T Consensus       370 ~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        370 NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            3468999999988765432 2  3555565543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=9.5e-09  Score=96.42  Aligned_cols=105  Identities=17%  Similarity=0.208  Sum_probs=87.3

Q ss_pred             ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeE
Q 004581          104 CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI  183 (744)
Q Consensus       104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  183 (744)
                      ++...+.+|++..+..    ..+-||-.-++.++|+||+++++|+..|..|||-....-..+..+-.       +|..-|
T Consensus       129 gD~~~~di~s~~~~~~----~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-------GH~eFV  197 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRC----EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-------GHKEFV  197 (390)
T ss_pred             CCceeeeeecccccCc----chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-------ccHhhe
Confidence            4555666666653222    55669999999999999999999999999999988776666666664       799999


Q ss_pred             EEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeec
Q 004581          184 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF  219 (744)
Q Consensus       184 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  219 (744)
                      ..++..++..|++++.|++|++||+.+|+++.++..
T Consensus       198 S~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  198 STISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             eeeeeccCceeeecCCCCcEEEEecccCCcccccch
Confidence            999999888999999999999999999999866543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.95  E-value=3.6e-07  Score=80.99  Aligned_cols=238  Identities=12%  Similarity=0.025  Sum_probs=153.0

Q ss_pred             EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCC
Q 004581          327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS  406 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~  406 (744)
                      +|+.||..|...+|...+.......-   .....-...+...+-+.-...+++-+.++++..+.-....           
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~c---d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~-----------  151 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQC---DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK-----------  151 (344)
T ss_pred             EEEeccccceeeeecccCcccceeee---cccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----------
Confidence            78999999999999887543221110   0000111223333444444566666778888877754422           


Q ss_pred             cceEEEEEecCCCCeEEEEEcCCCCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581          407 TSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       407 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~  485 (744)
                        ....  .+ .-...++++++|++++++ +....|..|.+..  .+..+.+   ..+......--+..|+.....+|++
T Consensus       152 --~~~h--~~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~--~sey~~~---~~~a~t~D~gF~~S~s~~~~~FAv~  221 (344)
T KOG4532|consen  152 --FAVH--NQ-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD--ESEYIEN---IYEAPTSDHGFYNSFSENDLQFAVV  221 (344)
T ss_pred             --ceee--cc-ccceeeeEEcCCCceEEEecCCCcceEEEeCC--ccceeee---eEecccCCCceeeeeccCcceEEEE
Confidence              1111  11 133788999999999988 7888999999976  3333322   1222233345677899999999999


Q ss_pred             eCCCcEEEEEccCC-ceeeeeccCcccccccCCCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCcceEEEEecCC
Q 004581          486 GHDRRIYVVDVSSS-ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ--WLAAVNCFGDVYIFNLEIQRQHWFISRLE  562 (744)
Q Consensus       486 ~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~~~  562 (744)
                      ..||++.|||+... .+......       ..+.|.+.+..+.||+-|.  +|...-.-+.+.+.|+.++.....+....
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMAEISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             ecCCcEEEEEecccccchhhhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence            99999999999744 33333222       2234899999999998654  56666667889999999887655543221


Q ss_pred             -------CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581          563 -------GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       563 -------~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                             ...|..-.|+. +++...+.+++ .+..|++..+.
T Consensus       295 d~~~~~~tq~ifgt~f~~-~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  295 DVERKHNTQHIFGTNFNN-ENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             cccccccccccccccccC-CCcccccccch-hhheeeccccc
Confidence                   13467777887 66766666655 46778877663

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.91  E-value=9e-07  Score=82.89  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=78.2

Q ss_pred             cEEEEEEec-CCCEEEEEeCCC-eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEE-----cCCCCE
Q 004581          132 RVLSVTWSA-DGNMLYSGSSDG-YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA-----DSTGSV  203 (744)
Q Consensus       132 ~V~~~~~s~-dg~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-----~~dg~i  203 (744)
                      +...++.+| .+..++.+-.-| ...+||..+|+....+..+.+.+..+|      -.|++|| +|++.     ...|.|
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEE
Confidence            445688899 555666666655 578999999999998886555544455      5799999 55554     346789


Q ss_pred             EEEeCC-CcceEEEeeccccceeEEEEcCCCCEEEee
Q 004581          204 QFWDSR-HGTLLQAHSFHKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       204 ~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~  239 (744)
                      -|||.. +.+.+.++..|.-.-..+.+.|||+.|+++
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence            999999 677788888887777889999999888886

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=1.9e-08  Score=88.48  Aligned_cols=147  Identities=18%  Similarity=0.293  Sum_probs=97.3

Q ss_pred             CCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-----CCeEEEEEccCCceEEEEEec
Q 004581           97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----DGYIRSWDAKLGYEIYRITVG  171 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----dg~i~vwd~~~~~~~~~~~~~  171 (744)
                      ++.+++++.||.+.+++.+.  .+...+.+..-...-.+.++-..++.+.++.-     -+..+.|+++..+....-.  
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~--~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--  176 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDK--DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--  176 (319)
T ss_pred             CCceEecCCCceEEEEechH--HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc--
Confidence            46899999999999999863  22111222211111222333345555554421     2245556554332221111  


Q ss_pred             CCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceE-EEeeccccceeEEEEcC-CCCEEEeecCCCeEEE
Q 004581          172 LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL-QAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVIL  247 (744)
Q Consensus       172 ~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~i  247 (744)
                            .....|.+++-+|..  .+++|+.||.+-+||.+..... ..+..|.+++..+-|+| ++..|++++.||.+..
T Consensus       177 ------~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  177 ------KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             ------cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence                  122348888888866  7889999999999999976544 45678999999999999 4688999999999999


Q ss_pred             EEcccC
Q 004581          248 YKASCE  253 (744)
Q Consensus       248 w~~~~~  253 (744)
                      ||..+.
T Consensus       251 wdas~~  256 (319)
T KOG4714|consen  251 WDASTT  256 (319)
T ss_pred             EcCCCc
Confidence            998863

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.5e-06  Score=89.54  Aligned_cols=187  Identities=12%  Similarity=0.161  Sum_probs=121.7

Q ss_pred             CCCCCCeeEEec----CCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581            1 MGLPGGRLFSSS----IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE   76 (744)
Q Consensus         1 ~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (744)
                      |+|+...+|+++    ..|.|.|+- ++|.+.+... ..-.+.+++|+|..                             
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~-----------------------------   71 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE-----------------------------   71 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH-----------------------------
Confidence            678888887775    468899985 7787766543 24456779999976                             


Q ss_pred             CccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 004581           77 TSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS  156 (744)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~v  156 (744)
                                           -.||.|-.-|.+.+|...+.+.-   .....|..+|..+.||++|..|+|+..-|.+.+
T Consensus        72 ---------------------~vLa~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~l  127 (1416)
T KOG3617|consen   72 ---------------------FVLAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHL  127 (1416)
T ss_pred             ---------------------HHHhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCCeEEEcCCCceeEE
Confidence                                 37889999999999998755443   445579999999999999999999999999999


Q ss_pred             EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-------eEEEEcCCCCEE-EEeCCCcceEEEeeccccceeEEE
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-------TLVSADSTGSVQ-FWDSRHGTLLQAHSFHKGDVNALA  228 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~l~s~~~dg~i~-vwd~~~~~~~~~~~~h~~~v~~l~  228 (744)
                      |....-..+.....  -.+.-+..-..++...++++       ..+..+.+..+- .++.+....-.+.. |       .
T Consensus       128 wr~d~~g~~q~~~~--~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------s  197 (1416)
T KOG3617|consen  128 WRYDVIGEIQTSNI--MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------S  197 (1416)
T ss_pred             EEeeeccccccchh--hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------c
Confidence            98753222222110  00001233345666667774       223333333333 44443211111111 1       1


Q ss_pred             EcCCCCEEEeecCCCeEEEEEccc
Q 004581          229 AAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       229 ~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      =.|+|..++.++.+|+|+--|-..
T Consensus       198 gv~~g~~F~~~~~~GtVyyvdq~g  221 (1416)
T KOG3617|consen  198 GVPKGTEFLFAGKSGTVYYVDQNG  221 (1416)
T ss_pred             CCCCCcEEEEEcCCceEEEEcCCC
Confidence            146788899999999988777554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=2.4e-06  Score=97.64  Aligned_cols=120  Identities=7%  Similarity=-0.068  Sum_probs=79.3

Q ss_pred             EEEEEec-CCCEEEEEeCCCeEEEEEccCCceEEEEEecC-CCCC------CCCceeEEEEEEecCC--eEEEEcCCCCE
Q 004581          134 LSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL-GGLG------SGPELCIWSLLSLRCG--TLVSADSTGSV  203 (744)
Q Consensus       134 ~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~~~~~~~--~l~s~~~dg~i  203 (744)
                      ..++|+| ++..+++.+.++.|++||..++... .+.... ....      ...-.....++++|++  .+++-..++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5799999 5566677677889999999877543 222110 0000      0111345679999998  44556667899


Q ss_pred             EEEeCCCcceEEEeec---------------------cccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          204 QFWDSRHGTLLQAHSF---------------------HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       204 ~vwd~~~~~~~~~~~~---------------------h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      ++||+.++.......+                     .-.....++++++|+.+++-+.++.|++||..++.
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~  836 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR  836 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence            9999987653211100                     01124688999999988888889999999987754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.84  E-value=7.1e-06  Score=74.44  Aligned_cols=70  Identities=13%  Similarity=0.168  Sum_probs=53.1

Q ss_pred             EEEEecCCeEEEEcCCCCEEEEeCCC--cceEEEeeccc---cceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          185 SLLSLRCGTLVSADSTGSVQFWDSRH--GTLLQAHSFHK---GDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       185 ~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~h~---~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      .++.+++|.+++.-.|..|.|-..++  ...+.+.+...   ..=..++||||+..|+.+...|+|++||+....
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            35667888888888888888887664  34444444332   235679999999999999999999999998754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.8e-07  Score=87.75  Aligned_cols=305  Identities=14%  Similarity=0.115  Sum_probs=193.1

Q ss_pred             CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC--c-ceEEEeeccccceeEEEEcCCCCEEEeecC-CCeEEEEEcccC
Q 004581          178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH--G-TLLQAHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASCE  253 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~~~  253 (744)
                      -|...|+.+..+....+++++.||.+++|--..  | +.+..+..|.+.|.+++.+-++.++.+.+. |..++++|+.+-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            377788888777777999999999999997653  2 334566789999999999999998999777 999999999875


Q ss_pred             cCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecC
Q 004581          254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGD  333 (744)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~  333 (744)
                      .....-               .+......+..+.-          +...                     -..+-++.-.
T Consensus        87 Dminmi---------------KL~~lPg~a~wv~s----------kGd~---------------------~s~IAVs~~~  120 (558)
T KOG0882|consen   87 DMINMI---------------KLVDLPGFAEWVTS----------KGDK---------------------ISLIAVSLFK  120 (558)
T ss_pred             chhhhc---------------ccccCCCceEEecC----------CCCe---------------------eeeEEeeccc
Confidence            431000               00000000000000          1100                     0012334445


Q ss_pred             CCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEE
Q 004581          334 DTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQV  413 (744)
Q Consensus       334 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (744)
                      ++.+.++|-.....                                                             .....
T Consensus       121 sg~i~VvD~~~d~~-------------------------------------------------------------q~~~f  139 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFC-------------------------------------------------------------QDGYF  139 (558)
T ss_pred             CCCcEEECCcCCcC-------------------------------------------------------------cccee
Confidence            66777777643110                                                             01112


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEE-cCCceEEEEeecC---CCCCceEEeeec----cCCcccccccEEEEeeCCCEEEEE
Q 004581          414 KSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKG---KVGQGEWIINKR----QLPRKLQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       414 ~~~~~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~---~~~~~~~~~~~~----~~~~~~~~v~~i~~spd~~~l~~~  485 (744)
                      ..-|..+|.++.+.+-+..+.+. ..|.|.-|.....   ..+...|.++..    ..+.......++.|+|+|..+.+-
T Consensus       140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl  219 (558)
T KOG0882|consen  140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL  219 (558)
T ss_pred             cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence            22345667777777777776664 5778888877520   012222333321    122233367899999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeeccCcc---------------------cccccCCCCCC-ceEEEEECCCCCEEEEEeCCCc
Q 004581          486 GHDRRIYVVDVSSSELLHTFTPCRE---------------------EHDREIQPSEP-PITKMFTSSDGQWLAAVNCFGD  543 (744)
Q Consensus       486 ~~dg~i~v~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~-~i~~l~~spdg~~las~~~dg~  543 (744)
                      +.|..|+++++.+|++++.+.....                     ..++++..|.. .-+.+.|...|++|+.++-=| 
T Consensus       220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-  298 (558)
T KOG0882|consen  220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-  298 (558)
T ss_pred             CcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence            9999999999999988877654211                     01122223333 335688999999999998877 


Q ss_pred             EEEEECCCcceEEEEecCCCCce------------------------eEEeecCCCCCeEEEEecCCeEEEE
Q 004581          544 VYIFNLEIQRQHWFISRLEGASV------------------------TAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       544 i~iwd~~~~~~~~~~~~~~~~~v------------------------~~l~~sp~~~~~l~~~~~d~~v~vw  591 (744)
                      |+|.++.++.....+-....-..                        -.+.+.+ |..++.++-.-+.+++|
T Consensus       299 ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  299 IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-CCeEEEeeeecceEEEE
Confidence            99999998887666532211000                        1234666 77888888888888888

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.83  E-value=5.6e-05  Score=67.33  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=80.1

Q ss_pred             CCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581          142 GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHK  221 (744)
Q Consensus       142 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~  221 (744)
                      ..+++.|+..+.+..-|..+|..+.+-.         ....+.+-+..-.+.++.|+..|.+.+.+.++|.....+....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i---------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI---------LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh---------hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            4577788889999999999999887765         3334444444334489999999999999999998888776543


Q ss_pred             cceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          222 GDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       222 ~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      .-=......+++..+..|+.|++.+..|..+..
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence            322334567789999999999999999988755

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.81  E-value=1.5e-06  Score=83.09  Aligned_cols=194  Identities=22%  Similarity=0.230  Sum_probs=125.6

Q ss_pred             CCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            4 PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         4 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      .++++++++.++.|..||..+|+.+.++.. .+.+.......+                                     
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~-------------------------------------   76 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDG-------------------------------------   76 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEET-------------------------------------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeecc-------------------------------------
Confidence            578888889999999999999999888775 332222212222                                     


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEe-ecc-cCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH-RSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL  161 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~-~~~-~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~  161 (744)
                                    ..+++++.++.|+.+|..+++.+-.. ... .... .........+++.++.+..++.|..+|+++
T Consensus        77 --------------~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t  141 (238)
T PF13360_consen   77 --------------GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKT  141 (238)
T ss_dssp             --------------TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTT
T ss_pred             --------------cccccccceeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCC
Confidence                          36777788899999998878776431 111 1111 222233333488889888899999999999


Q ss_pred             CceEEEEEecCCCCCCCC---ceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEe
Q 004581          162 GYEIYRITVGLGGLGSGP---ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~  238 (744)
                      |+.+........... .+   ...+..-....++.++.++.++.+..+|..+++.+....  ...+..+ ...++..|++
T Consensus       142 G~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~  217 (238)
T PF13360_consen  142 GKLLWKYPVGEPRGS-SPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYV  217 (238)
T ss_dssp             TEEEEEEESSTT-SS---EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEE
T ss_pred             CcEEEEeecCCCCCC-cceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEE
Confidence            999998875211100 00   011122223335578888888864444999998665333  2233332 3456778888


Q ss_pred             ecCCCeEEEEEcccCc
Q 004581          239 TGSDGQVILYKASCES  254 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~  254 (744)
                      ++.++.|..||+.+++
T Consensus       218 ~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EETTTEEEEEETTTTE
T ss_pred             EeCCCEEEEEECCCCC
Confidence            8899999999999987

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.80  E-value=1.1e-05  Score=77.10  Aligned_cols=148  Identities=23%  Similarity=0.260  Sum_probs=92.8

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ..+++++.++.|..||..+++.+.. ..+.+.-...  .  ..++..++.++.++.|+.+|..+|+.+........... 
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~-~~~~~~~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-  110 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWR-FDLPGPISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA-  110 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEE-EECSSCGGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC-
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEE-eeccccccce--e--eecccccccccceeeeEecccCCcceeeeecccccccc-
Confidence            4788889999999999987776532 2222211111  1  22456677777888999999999999998532111100 


Q ss_pred             CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccc----------eeEEEEcCCCCEEEeecCCCeEEE
Q 004581          178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGD----------VNALAAAPSHNRVFSTGSDGQVIL  247 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~~~~~dg~i~i  247 (744)
                       .........+. ++.++.+..++.|..+|+++|+.+.........          +..-....++ .++.++.++.+..
T Consensus       111 -~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~  187 (238)
T PF13360_consen  111 -GVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVA  187 (238)
T ss_dssp             -STB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEE
T ss_pred             -ccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEE
Confidence             01111122222 447888888999999999999999888764422          1222223344 7777777886444


Q ss_pred             EEcccCc
Q 004581          248 YKASCES  254 (744)
Q Consensus       248 w~~~~~~  254 (744)
                      +|+.++.
T Consensus       188 ~d~~tg~  194 (238)
T PF13360_consen  188 VDLATGE  194 (238)
T ss_dssp             EETTTTE
T ss_pred             EECCCCC
Confidence            4888765

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.80  E-value=2.9e-05  Score=74.27  Aligned_cols=107  Identities=17%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             CCeEEEEEcCCCCEEEEE--cCCceEEEEeecCCCCCceEEeee-ccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581          419 RKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d  495 (744)
                      .....++|+|+++.|.++  ..+.|..|++..  .+..+-.... ..+.......-.+++..+|++.++....+.|.+++
T Consensus       134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA--DGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEETTTTEEEEEEEET--TTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             ccccceEECCcchheeecccccceeEEEeccc--cccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence            335677788888776654  455555555553  1221111110 11222222467899999999888888889999999


Q ss_pred             ccCCceeeeeccCcccccccCCCCCCceEEEEE-CCCCCEEEEEe
Q 004581          496 VSSSELLHTFTPCREEHDREIQPSEPPITKMFT-SSDGQWLAAVN  539 (744)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-spdg~~las~~  539 (744)
                      .+ |+++..+..           ....+++++| -++.+.|...+
T Consensus       212 p~-G~~~~~i~~-----------p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  212 PD-GKLLREIEL-----------PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TT-SCEEEEEE------------SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CC-ccEEEEEcC-----------CCCCEEEEEEECCCCCEEEEEe
Confidence            76 998888876           3458999999 46767665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=3.3e-06  Score=86.42  Aligned_cols=133  Identities=12%  Similarity=0.057  Sum_probs=83.0

Q ss_pred             CCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe-C--CCeEEEEEccCCceEEEEEecCCCCCCCCcee
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-S--DGYIRSWDAKLGYEIYRITVGLGGLGSGPELC  182 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~-~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (744)
                      +..|.++|+.+++..    .+....+......|||||+.|+... .  +..|.++|+.++.. ..+..        +...
T Consensus       212 ~~~Iyv~dl~tg~~~----~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~--------~~~~  278 (419)
T PRK04043        212 KPTLYKYNLYTGKKE----KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN--------YPGI  278 (419)
T ss_pred             CCEEEEEECCCCcEE----EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc--------CCCc
Confidence            457899999766543    2323455667788999998776543 2  35788889877764 44441        2222


Q ss_pred             EEEEEEecCC-eEEEEc-CCC--CEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCC---------CeEEEEE
Q 004581          183 IWSLLSLRCG-TLVSAD-STG--SVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD---------GQVILYK  249 (744)
Q Consensus       183 v~~~~~~~~~-~l~s~~-~dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d---------g~i~iw~  249 (744)
                      .....|+||| .|+..+ ..+  .|.+.|+.+++..+.... ...  ...|+|||++|+.....         ..|.+.+
T Consensus       279 d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d  355 (419)
T PRK04043        279 DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS  355 (419)
T ss_pred             cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence            3345799999 444433 333  577888887765433321 111  24899999988866543         2566667


Q ss_pred             cccCc
Q 004581          250 ASCES  254 (744)
Q Consensus       250 ~~~~~  254 (744)
                      +.++.
T Consensus       356 ~~~g~  360 (419)
T PRK04043        356 TNSDY  360 (419)
T ss_pred             CCCCC
Confidence            66554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.76  E-value=8.9e-06  Score=77.82  Aligned_cols=223  Identities=15%  Similarity=0.160  Sum_probs=140.9

Q ss_pred             cccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeec-CCeEEEEEeCCeEEEEEeeccCCcccC
Q 004581          320 WAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS-HTSLLLVQYSCRLDILSVRLENNVESR  398 (744)
Q Consensus       320 w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~i~i~~~~~~~~~~~~  398 (744)
                      |....+.++++--..+.|+.|+..+..... ..   .      .....+++. +++.++++....+.+++......    
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~---~------~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~----   72 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID---L------PGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKV----   72 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEE-EE---S------SSEEEEEEECTTSEEEEEETTCEEEEETTTTEE----
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee---c------CCCceEEEEccCCEEEEEEcCceEEEecCCCcE----
Confidence            333355577777788899999987644221 00   1      114566777 78998888888887776554431    


Q ss_pred             CCCCCCCCcceEEEEE-ec-CCCCeEEEEEcCCCCEEEEEcCCc-------eEEEEeecCCCCCceEEeeeccCCccccc
Q 004581          399 SSSGGHASTSLLVQVK-SK-ASRKIICSTISNSGMLFAYSDHVK-------PSLFELKKGKVGQGEWIINKRQLPRKLQF  469 (744)
Q Consensus       399 ~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~s~~g~~la~~~~~~-------v~l~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (744)
                               +.+.... .. .......++++|+|++.++.....       =++|.+... .....       +......
T Consensus        73 ---------~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-------~~~~~~~  135 (246)
T PF08450_consen   73 ---------TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-------VADGLGF  135 (246)
T ss_dssp             ---------EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-------EEEEESS
T ss_pred             ---------EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-------EecCccc
Confidence                     1333332 11 346678999999999777642221       357777652 22111       1222346


Q ss_pred             ccEEEEeeCCCEEEEE-eCCCcEEEEEccC-Cc-e--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcE
Q 004581          470 AHSMIFSYDSSQLIIA-GHDRRIYVVDVSS-SE-L--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDV  544 (744)
Q Consensus       470 v~~i~~spd~~~l~~~-~~dg~i~v~d~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i  544 (744)
                      .+.|+|+||++.|+++ +..+.|..|++.. +. .  .+.+.....        ..+..-.+++..+|++.++....+.|
T Consensus       136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------~~g~pDG~~vD~~G~l~va~~~~~~I  207 (246)
T PF08450_consen  136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------GPGYPDGLAVDSDGNLWVADWGGGRI  207 (246)
T ss_dssp             EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------SSCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred             ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------CCcCCCcceEcCCCCEEEEEcCCCEE
Confidence            7899999999988655 5578899999863 22 1  122211000        22357889999999988888889999


Q ss_pred             EEEECCCcceEEEEecCCCCceeEEeec-CCCCCeEEEEec
Q 004581          545 YIFNLEIQRQHWFISRLEGASVTAAGFP-PQNNNVLIITTS  584 (744)
Q Consensus       545 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~l~~~~~  584 (744)
                      .+++.+ ++....+... ...+++++|. + +.+.|++.+.
T Consensus       208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~-~~~~L~vTta  245 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELP-VPRPTNCAFGGP-DGKTLYVTTA  245 (246)
T ss_dssp             EEEETT-SCEEEEEE-S-SSSEEEEEEEST-TSSEEEEEEB
T ss_pred             EEECCC-ccEEEEEcCC-CCCEEEEEEECC-CCCEEEEEeC
Confidence            999988 7776666554 3489999994 5 6677776653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.75  E-value=2.5e-07  Score=93.57  Aligned_cols=191  Identities=16%  Similarity=0.200  Sum_probs=129.3

Q ss_pred             CeEEEEecCCeEEEEEecC-CCceeEeecccCccCcEEEEEEecCCC---EEEEEeCCCeEEEEEccC--CceEEEEEec
Q 004581           98 RRVALACDDGCVRIYRITD-SDELIYHRSLPRVSGRVLSVTWSADGN---MLYSGSSDGYIRSWDAKL--GYEIYRITVG  171 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~dg~---~l~t~~~dg~i~vwd~~~--~~~~~~~~~~  171 (744)
                      +-+|.++.-| +.+-|+.. ......++.+.  .-.|-.+.|+|...   ++++.+ ...-.+|++..  .+.+.-+.. 
T Consensus        37 rdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lh-  111 (1081)
T KOG0309|consen   37 RDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLH-  111 (1081)
T ss_pred             chhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEe-
Confidence            3455556555 44556653 23332222222  12466777887532   455444 44667898753  233333332 


Q ss_pred             CCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581          172 LGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY  248 (744)
Q Consensus       172 ~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw  248 (744)
                            +|...|+.+.|.|..  .+++++.|-.+..||+++ ..++..+..-......++|+-....+.+.+....|.+|
T Consensus       112 ------ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  112 ------GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             ------cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence                  799999999999988  789999999999999987 45566666556667889998766666666777889999


Q ss_pred             EcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEE
Q 004581          249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPML  328 (744)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l  328 (744)
                      |.+.+..                ++..+.+|...|..++|..                                .....+
T Consensus       186 d~r~gs~----------------pl~s~K~~vs~vn~~~fnr--------------------------------~~~s~~  217 (1081)
T KOG0309|consen  186 DLRKGST----------------PLCSLKGHVSSVNSIDFNR--------------------------------FKYSEI  217 (1081)
T ss_pred             eccCCCc----------------ceEEecccceeeehHHHhh--------------------------------hhhhhh
Confidence            9988763                3567778888888888741                                011268


Q ss_pred             EEecCCCeEEEEecCccCC
Q 004581          329 ISAGDDTKLFAYCANEFTK  347 (744)
Q Consensus       329 ~s~~~d~~i~~~~~~~~~~  347 (744)
                      .+++.|++|++|+......
T Consensus       218 ~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             cccCCCCceeeeccccccc
Confidence            8999999999999876443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.74  E-value=1.2e-07  Score=85.73  Aligned_cols=285  Identities=13%  Similarity=0.148  Sum_probs=161.5

Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCc-----ceEEEeeccc------------cceeEEEEcCCC--CEEE
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG-----TLLQAHSFHK------------GDVNALAAAPSH--NRVF  237 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~-----~~~~~~~~h~------------~~v~~l~~~~~~--~~l~  237 (744)
                      .....|+++.|-..| +|++|+..|.|.++.-+..     +....+++|.            ..|..+.|..++  ..++
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            356789999999998 9999999999999976532     2233455554            357888887654  4567


Q ss_pred             eecCCCeEEEEEcccCcCC--------------CCCCCCcc------cccce--EEEEee----eeeccCcceeeeeecc
Q 004581          238 STGSDGQVILYKASCESIG--------------PNDGLSSS------EVIKK--WIYVGS----VRAHTHDVRALTVAVP  291 (744)
Q Consensus       238 ~~~~dg~i~iw~~~~~~~~--------------~~~~~~~~------~~~~~--~~~~~~----~~~h~~~v~~l~~~~~  291 (744)
                      ..+.|.+|++|.+......              ..+.+...      .....  ......    ...|...+.++.+.  
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N--  181 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN--  181 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--
Confidence            7779999999998776320              00000000      00000  111111    12344455555553  


Q ss_pred             CCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccC-CCCCcccCCCCCCCccccccceee
Q 004581          292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFT-KFSPHEICPAPQRVPIHLVHNTIF  370 (744)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~  370 (744)
                             .|.                        +.+++ +.|-.|.+|++.-.. .+......+.........|++..|
T Consensus       182 -------sD~------------------------et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeF  229 (460)
T COG5170         182 -------SDK------------------------ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEF  229 (460)
T ss_pred             -------Cch------------------------heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhccc
Confidence                   222                        24554 447789999887432 122222222333334567888999


Q ss_pred             cCCeEEE--E-EeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEee
Q 004581          371 SHTSLLL--V-QYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELK  447 (744)
Q Consensus       371 s~~~~~l--~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~  447 (744)
                      +|....+  . +..+.+++-+++...........-...-...-......--..|..+.|+++|+++++-+-.++++|+.+
T Consensus       230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvn  309 (460)
T COG5170         230 HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVN  309 (460)
T ss_pred             CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecc
Confidence            9965433  3 345689998888443221000000000000000001112356788999999999999999999999998


Q ss_pred             cCCCCCceEEeeec---cCCccc--c---cccEEEEeeCCCEEEEEeCCCcEEEEEc
Q 004581          448 KGKVGQGEWIINKR---QLPRKL--Q---FAHSMIFSYDSSQLIIAGHDRRIYVVDV  496 (744)
Q Consensus       448 ~~~~~~~~~~~~~~---~~~~~~--~---~v~~i~~spd~~~l~~~~~dg~i~v~d~  496 (744)
                      .....++...+...   ++....  .   .--.+.||.|.+.+.+|+.....-+|-.
T Consensus       310 m~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         310 MAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             cccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            73333322111100   000000  0   2235788999999999999888777764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.74  E-value=2.6e-05  Score=70.86  Aligned_cols=214  Identities=16%  Similarity=0.204  Sum_probs=126.0

Q ss_pred             EEEEecCCeEEEEEecCCCc-ee-EeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581          100 VALACDDGCVRIYRITDSDE-LI-YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus       100 la~~~~dg~i~iwd~~~~~~-~~-~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      +++.-.|..|.|=...++=. .. .-..-+...-.-+-++||||+..||.+...|+|+++|+. |..+..+..... ...
T Consensus        11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~~-~~~   88 (282)
T PF15492_consen   11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVIPPAMS-FPG   88 (282)
T ss_pred             EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEcCcccc-cCC
Confidence            33444556777766542211 10 001222223346789999999999999999999999985 455656553221 111


Q ss_pred             CCceeEEEEEEecCC-------eEEEEcCCCCEEEEeCCC-----cceEEEeec---cccceeEEEEcCCCCEEEeecCC
Q 004581          178 GPELCIWSLLSLRCG-------TLVSADSTGSVQFWDSRH-----GTLLQAHSF---HKGDVNALAAAPSHNRVFSTGSD  242 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-------~l~s~~~dg~i~vwd~~~-----~~~~~~~~~---h~~~v~~l~~~~~~~~l~~~~~d  242 (744)
                      .....|..+.|.+..       .|+.-..+|.++=|-+..     .+...++..   +...|.++.++|..++|++||..
T Consensus        89 d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~  168 (282)
T PF15492_consen   89 DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE  168 (282)
T ss_pred             ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence            345667777777532       467777788887776532     233333332   46789999999999988887652


Q ss_pred             C-----------eEEEEEcccCcC------CCCCCCCccc-ccceEEEE--eee---eeccCcceeeeeeccCCCCCCCC
Q 004581          243 G-----------QVILYKASCESI------GPNDGLSSSE-VIKKWIYV--GSV---RAHTHDVRALTVAVPISREDPLP  299 (744)
Q Consensus       243 g-----------~i~iw~~~~~~~------~~~~~~~~~~-~~~~~~~~--~~~---~~h~~~v~~l~~~~~~~~~~~~~  299 (744)
                      .           -+..|.+-.+..      ...+.+.... ...-+...  ..+   ......|..|.++         |
T Consensus       169 ~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS---------P  239 (282)
T PF15492_consen  169 QNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS---------P  239 (282)
T ss_pred             CCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC---------C
Confidence            1           256676655432      1111111111 01111111  000   1123456666665         5


Q ss_pred             cccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCC
Q 004581          300 EDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKF  348 (744)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~  348 (744)
                      |++                        .|++...+|.|.+|++......
T Consensus       240 dg~------------------------~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  240 DGS------------------------LLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             CCC------------------------EEEEEEcCCeEEEEecCcchhh
Confidence            555                        9999999999999999876543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=5.2e-08  Score=94.81  Aligned_cols=228  Identities=13%  Similarity=0.133  Sum_probs=155.2

Q ss_pred             eeEEecCCCeEEEEEccC-------CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581            7 RLFSSSIDGSVSEWDLYD-------LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE   79 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~-------~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (744)
                      -+++++.|.+|++|.++.       ..+..+++.|..+|..+.|-.+.++++++     +.++.+|+.+...........
T Consensus       749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D~giHlWDPFigr~Laq~~da  823 (1034)
T KOG4190|consen  749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----DGGIHLWDPFIGRLLAQMEDA  823 (1034)
T ss_pred             ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----cCcceeecccccchhHhhhcC
Confidence            478999999999999863       34677899999999999999999998775     446677777653222222222


Q ss_pred             CCCCCCcccccccccccCCeEEEE-ecCCeEEEEEecCCCceeEeecc--cCccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 004581           80 SENDSDSDELHEQSVVEDRRVALA-CDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDGYIRS  156 (744)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~la~~-~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~V~~~~~s~dg~~l~t~~~dg~i~v  156 (744)
                      ... ..+..+.+....+...+.+| +...+|+++|....+-..-.+..  .+..+-+.+++..+.|++|+.+-..|+|.+
T Consensus       824 pk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~  902 (1034)
T KOG4190|consen  824 PKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI  902 (1034)
T ss_pred             ccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence            221 22223333333334444444 77899999999865543222333  355678999999999999999999999999


Q ss_pred             EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEE-EeCCCcceEEEeeccccceeEEEEcCCCCE
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQF-WDSRHGTLLQAHSFHKGDVNALAAAPSHNR  235 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  235 (744)
                      .|.++|+.+...+        ..+.....++-..|..|+....|.++.+ |-.-.|....+.+....+..-+.  .-|..
T Consensus       903 LDaR~G~vINswr--------pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpS  972 (1034)
T KOG4190|consen  903 LDARNGKVINSWR--------PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPS  972 (1034)
T ss_pred             EecCCCceeccCC--------cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCce
Confidence            9999999887766        3445555555444557788888999998 98777766655553333322111  12556


Q ss_pred             EEeecCCCeEEEEEc
Q 004581          236 VFSTGSDGQVILYKA  250 (744)
Q Consensus       236 l~~~~~dg~i~iw~~  250 (744)
                      |+++.....+.+|.-
T Consensus       973 LV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  973 LVTAQNGNILGVYAD  987 (1034)
T ss_pred             eEEeccCcEEEEEec
Confidence            777766667777753

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.73  E-value=1.2e-07  Score=95.82  Aligned_cols=248  Identities=16%  Similarity=0.165  Sum_probs=159.7

Q ss_pred             eEEecCCCeEEEEEccC---CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            8 LFSSSIDGSVSEWDLYD---LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      -++......-.+|++..   ...-..+.+|+..|+.+-|+|...                                    
T Consensus        84 wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p------------------------------------  127 (1081)
T KOG0309|consen   84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP------------------------------------  127 (1081)
T ss_pred             eEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCC------------------------------------
Confidence            34444555667898863   334446889999999999999874                                    


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE  164 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~  164 (744)
                                   ..||+++.|-.+..||+.+.....  ..+..-..+-..++|+.....+...+....|++||.+.|..
T Consensus       128 -------------dVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~  192 (1081)
T KOG0309|consen  128 -------------DVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST  192 (1081)
T ss_pred             -------------cceeeccccccceeeeccCCCcce--eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence                         479999999999999998655443  33333445667899987555555556677899999987754


Q ss_pred             -EEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCCcceEE-EeeccccceeEEEEcCCCCE--EEe
Q 004581          165 -IYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQ-AHSFHKGDVNALAAAPSHNR--VFS  238 (744)
Q Consensus       165 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~--l~~  238 (744)
                       +..++        +|...|..+.|..--  .+.+.+.||+|++||.+....-. .......+|.--++.|-|.-  +.-
T Consensus       193 pl~s~K--------~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp  264 (1081)
T KOG0309|consen  193 PLCSLK--------GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP  264 (1081)
T ss_pred             ceEEec--------ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence             45555        688999999998754  79999999999999987533221 11223456777777775432  222


Q ss_pred             ecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCcccccc
Q 004581          239 TGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYH  318 (744)
Q Consensus       239 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (744)
                      .-.+..+.+++.+.....       -.....-..+..+.+|+..|...-|-.          .       .+.....   
T Consensus       265 ~~G~n~v~~~~c~n~d~e-------~n~~~~~~pVh~F~GH~D~V~eFlWR~----------r-------~e~~~d~---  317 (1081)
T KOG0309|consen  265 MVGGNMVPQLRCENSDLE-------WNVFDLNTPVHTFVGHDDVVLEFLWRK----------R-------KECDGDY---  317 (1081)
T ss_pred             ccCCeeeeeccccchhhh-------hccccCCcceeeecCcchHHHHHhhhh----------c-------ccccCCC---
Confidence            222335555554443210       000111234778889998887665520          0       0000000   


Q ss_pred             ccccCCCcEEEEecCCCeEEEEecCc
Q 004581          319 KWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       319 ~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                         ....-.|++=+.|..+++|.+..
T Consensus       318 ---d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  318 ---DSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ---CccceeEEEeecCCceEeeeccH
Confidence               00112799999999999999874

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.68  E-value=0.00012  Score=79.43  Aligned_cols=183  Identities=15%  Similarity=0.146  Sum_probs=110.4

Q ss_pred             CCeEEEEEcCCCCEEEE-----EcC-CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE---eCCC
Q 004581          419 RKIICSTISNSGMLFAY-----SDH-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA---GHDR  489 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~-----~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~---~~dg  489 (744)
                      ..-++++|--||+++|+     ..+ ..+++|+.+.   ....     . -......-.+++|-|.|..+++-   ..|+
T Consensus       196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg---~Lns-----~-se~~~~l~~~LsWkPsgs~iA~iq~~~sd~  266 (1265)
T KOG1920|consen  196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG---ALNS-----T-SEPVEGLQHSLSWKPSGSLIAAIQCKTSDS  266 (1265)
T ss_pred             cCCceEEEccCCcEEEEEEEeccCCceeEEEecccc---hhhc-----c-cCcccccccceeecCCCCeEeeeeecCCCC
Confidence            34457889999999988     244 7888888752   1110     0 01111144688999999999886   3456


Q ss_pred             cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE---EeCCCcEEEEECCCcceEEEEec---CCC
Q 004581          490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA---VNCFGDVYIFNLEIQRQHWFISR---LEG  563 (744)
Q Consensus       490 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las---~~~dg~i~iwd~~~~~~~~~~~~---~~~  563 (744)
                      .|.+|.- +|-.-..|.-..       +....++..++|+.++..||+   ......|++|-+.+..  +.++.   ...
T Consensus       267 ~IvffEr-NGL~hg~f~l~~-------p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh--WYLKq~l~~~~  336 (1265)
T KOG1920|consen  267 DIVFFER-NGLRHGEFVLPF-------PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH--WYLKQELQFSQ  336 (1265)
T ss_pred             cEEEEec-CCccccccccCC-------cccccchheeeecCCCCceeeeecccccceEEEEEecCeE--EEEEEEEeccc
Confidence            7999985 343322222110       113445999999999999998   4444559999887653  33221   122


Q ss_pred             CceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEE
Q 004581          564 ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMC  643 (744)
Q Consensus       564 ~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~  643 (744)
                      ...  +.|+|.....|.+-..+|.+.++++.-.                          ..+||+ .....++.+++.+-
T Consensus       337 ~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~--------------------------t~~s~~-d~S~~~VIDgs~ll  387 (1265)
T KOG1920|consen  337 KAL--LMWDPVTEKTLHVLRESGQRLVRDFAWT--------------------------TDRSPN-DGSTVYVIDGSRLL  387 (1265)
T ss_pred             ccc--ccccCCCceeEEEEecCCcEEEEEEEEe--------------------------eeccCC-CCceEEEEeCCEEE
Confidence            222  7899855555655556666666655422                          233354 23345566777777


Q ss_pred             EEeCCC
Q 004581          644 VIDFGR  649 (744)
Q Consensus       644 ~~~~~~  649 (744)
                      +-++..
T Consensus       388 vT~ls~  393 (1265)
T KOG1920|consen  388 VTPLSL  393 (1265)
T ss_pred             Eecchh
Confidence            777755

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.1e-06  Score=83.83  Aligned_cols=274  Identities=12%  Similarity=0.106  Sum_probs=172.2

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceEEEEEecCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DGYIRSWDAKLGYEIYRITVGLGGLG  176 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (744)
                      +++.+++-||.++.|.-..-....+..-+..|-+.|.+++.+.+|..+.|.+. |..++++|+++-..+..++..     
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-----   95 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV-----   95 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc-----
Confidence            48999999999999987643556666888899999999999999999999877 999999999887666555432     


Q ss_pred             CCCceeEEEEEEecCC---eEE-EEcCCCCEEEEeCCCc--ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581          177 SGPELCIWSLLSLRCG---TLV-SADSTGSVQFWDSRHG--TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA  250 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~---~l~-s~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~  250 (744)
                       .....+. ...++..   .++ +.-.++.+.|+|-...  +....-..|..+|.++.+++.+..+++....|.|.-|..
T Consensus        96 -~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~  173 (558)
T KOG0882|consen   96 -DLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA  173 (558)
T ss_pred             -cCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecC
Confidence             1122222 2222322   333 3445788999997753  333445679999999999999999999999999999998


Q ss_pred             ccCcCCCCCCCCcccccceEEE-----EeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581          251 SCESIGPNDGLSSSEVIKKWIY-----VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV  325 (744)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  325 (744)
                      ...-+ ...      ....|.+     +..+........++.++         |++.                       
T Consensus       174 e~~~q-fPr------~~l~~~~K~eTdLy~f~K~Kt~pts~Efs---------p~g~-----------------------  214 (558)
T KOG0882|consen  174 EGPFQ-FPR------TNLNFELKHETDLYGFPKAKTEPTSFEFS---------PDGA-----------------------  214 (558)
T ss_pred             CCccc-Ccc------ccccccccccchhhcccccccCccceEEc---------cccC-----------------------
Confidence            85211 000      1111211     11112223445566765         5554                       


Q ss_pred             cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCC
Q 004581          326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHA  405 (744)
Q Consensus       326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~  405 (744)
                       .+.+-+.|..|+++...+....+.........          .+-|..        ...+-.+..+..-          
T Consensus       215 -qistl~~DrkVR~F~~KtGklvqeiDE~~t~~----------~~q~ks--------~y~l~~VelgRRm----------  265 (558)
T KOG0882|consen  215 -QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA----------QYQPKS--------PYGLMHVELGRRM----------  265 (558)
T ss_pred             -cccccCcccEEEEEEeccchhhhhhhccchhh----------hhcccc--------ccccceeehhhhh----------
Confidence             77788899999999998765443332111000          000000        0000000000000          


Q ss_pred             CcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeec
Q 004581          406 STSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKK  448 (744)
Q Consensus       406 ~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~  448 (744)
                        ..-.++.......-+.+.|...|++|.+++--.|+++++.+
T Consensus       266 --averelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t  306 (558)
T KOG0882|consen  266 --AVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT  306 (558)
T ss_pred             --hHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence              00011112223445567899999999999888899999886

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.66  E-value=8.7e-08  Score=60.92  Aligned_cols=36  Identities=53%  Similarity=0.880  Sum_probs=34.4

Q ss_pred             eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 004581          123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD  158 (744)
Q Consensus       123 ~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd  158 (744)
                      .+++.+|.+.|.+|+|+|++++|++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            378999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.65  E-value=2.3e-07  Score=81.90  Aligned_cols=94  Identities=17%  Similarity=0.273  Sum_probs=68.4

Q ss_pred             CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEE
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWS  185 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (744)
                      +..+.|++...+.+.   .-..-...|.+++-+|..+ .+++|+.||.+-+||.+.......+.       ..|+..++.
T Consensus       159 d~~~a~~~~p~~t~~---~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-------~ahk~~i~e  228 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLI---PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-------KAHKAEIWE  228 (319)
T ss_pred             cceeeeccccccccc---ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-------HHhhhhhhh
Confidence            456677765332221   1111223499999999765 56677889999999998874443333       269999999


Q ss_pred             EEEecCC--eEEEEcCCCCEEEEeCCC
Q 004581          186 LLSLRCG--TLVSADSTGSVQFWDSRH  210 (744)
Q Consensus       186 ~~~~~~~--~l~s~~~dg~i~vwd~~~  210 (744)
                      +-|+|..  .|+++++||.+..||..+
T Consensus       229 V~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  229 VHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999977  899999999999999873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.4e-07  Score=86.75  Aligned_cols=150  Identities=16%  Similarity=0.205  Sum_probs=118.1

Q ss_pred             cccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCC-----ceEE
Q 004581           92 QSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-----YEIY  166 (744)
Q Consensus        92 ~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~-----~~~~  166 (744)
                      ++.+...+-++.+-+..|-+-|++++-.    +.|. -.+-|.++.|...++++..|+..|.|.+.|++.+     .+..
T Consensus       219 wSlni~gyhfs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  219 WSLNIMGYHFSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhccceeeecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            3333334446667778899999986655    4444 6678999999998999999999999999999764     4556


Q ss_pred             EEEecCCCCCCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcce---EEEeeccccceeE--EEEcCCCCEEEee
Q 004581          167 RITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNA--LAAAPSHNRVFST  239 (744)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~--l~~~~~~~~l~~~  239 (744)
                      ++.         |...|+++.... ++ .|++.+.+|+|++||.+.-++   +.++.+|...-.-  +-..+....++++
T Consensus       294 rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  294 RLY---------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             EEE---------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence            665         889999998887 44 899999999999999987666   8899998754333  3345666789999


Q ss_pred             cCCCeEEEEEcccCcC
Q 004581          240 GSDGQVILYKASCESI  255 (744)
Q Consensus       240 ~~dg~i~iw~~~~~~~  255 (744)
                      |.|-..++|.++.+.+
T Consensus       365 GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHL  380 (425)
T ss_pred             cCeeEEEEEecccCce
Confidence            9999999999998773

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.63  E-value=6.8e-05  Score=71.41  Aligned_cols=164  Identities=9%  Similarity=0.105  Sum_probs=91.7

Q ss_pred             CCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCc-ccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCc--eeeee
Q 004581          429 SGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE--LLHTF  505 (744)
Q Consensus       429 ~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~--~~~~~  505 (744)
                      +..+.+.|.||.+.-+.+.. ++...  ...+..+.. .......-+++..+..++-.+.+|.|+-.|+....  ....+
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~-~Gk~~--~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~  223 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDA-DGKEA--QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW  223 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETS-TSSEE--EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred             CCceEEEecCCceEEEEECC-CCCEe--EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence            34566668888888888875 22222  122222211 11123344556666677778899999999986443  22222


Q ss_pred             ccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---C-------CcEEEEECCCcceEEEEecCCCCceeEEeecCCC
Q 004581          506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---F-------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQN  575 (744)
Q Consensus       506 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~  575 (744)
                      ..... .+....--.+.-.-+++++..+.|.+--.   +       ..|.+||+.+.+.+..++..+  ++.+|+.+.++
T Consensus       224 ~~~t~-~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~  300 (342)
T PF06433_consen  224 SLLTD-AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDD  300 (342)
T ss_dssp             ESS-H-HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSS
T ss_pred             cccCc-cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCC
Confidence            21000 00000001123345778776655554321   1       168999999999988887544  78899999945


Q ss_pred             CCeEEEEe-cCCeEEEEEcCCCcc
Q 004581          576 NNVLIITT-SSNQVYVFDVEAKQL  598 (744)
Q Consensus       576 ~~~l~~~~-~d~~v~vwd~~~~~~  598 (744)
                      ..+|+..+ .++.+.+||..+|++
T Consensus       301 ~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             S-EEEEEETTTTEEEEEETTT--E
T ss_pred             CcEEEEEcCCCCeEEEEeCcCCcE
Confidence            45665554 578999999999975

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=1.2e-07  Score=87.14  Aligned_cols=161  Identities=17%  Similarity=0.189  Sum_probs=117.6

Q ss_pred             EEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccc
Q 004581            9 FSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE   88 (744)
Q Consensus         9 ~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (744)
                      |+.|.+..|-+-|++||.... |. ....|.++.|.-.+                                         
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~-----------------------------------------  264 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSD-----------------------------------------  264 (425)
T ss_pred             ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccC-----------------------------------------
Confidence            777888889999999876544 33 46778888888766                                         


Q ss_pred             ccccccccCCeEEEEecCCeEEEEEecCCC--ceeEeecccCccCcEEEEEEec-CCCEEEEEeCCCeEEEEEccCCce-
Q 004581           89 LHEQSVVEDRRVALACDDGCVRIYRITDSD--ELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGSSDGYIRSWDAKLGYE-  164 (744)
Q Consensus        89 ~~~~~~~~~~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~~dg~i~vwd~~~~~~-  164 (744)
                               +++..|+..|.|..+|+..+.  .....+.+ -|...|+++..-. ++++|.+.+.+|.|.+||.+--++ 
T Consensus       265 ---------nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~  334 (425)
T KOG2695|consen  265 ---------NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK  334 (425)
T ss_pred             ---------CeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence                     699999999999999998441  11111333 5889999998776 788999999999999999876655 


Q ss_pred             --EEEEEecCCCCCCCCceeEEEEEEe--c-CCeEEEEcCCCCEEEEeCCCcceEEEeeccc----cceeEEEEc
Q 004581          165 --IYRITVGLGGLGSGPELCIWSLLSL--R-CGTLVSADSTGSVQFWDSRHGTLLQAHSFHK----GDVNALAAA  230 (744)
Q Consensus       165 --~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~  230 (744)
                        +..+.        +|...-.-+-++  + .|.+++++.|.-.+||.++.|.++.++....    ..+.+++|.
T Consensus       335 ~~V~qYe--------GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  335 KSVMQYE--------GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cceeeee--------cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence              66665        444332222222  2 3478999999999999999999998886532    234455553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.58  E-value=1.9e-07  Score=59.37  Aligned_cols=39  Identities=26%  Similarity=0.430  Sum_probs=37.1

Q ss_pred             cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          211 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       211 ~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                      |+++.++++|.+.|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.55  E-value=0.00041  Score=62.01  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=98.6

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ++++.|+..+.+.--|..++...- ...+   ..+|.+-+.- -|++++.|+..|.+.+.++++|.....+...      
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~W-e~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------   92 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIW-EAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------   92 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEe-ehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence            589999999999999988665432 1222   2344443333 5788999999999999999999988888731      


Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                       ..-.+.+ ...+++ .+..|+.|++....|.++..++...+...+...+-+..|-...|+.+...|.+.--+...
T Consensus        93 -~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen   93 -ETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             -hhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence             2222222 233455 899999999999999999999988776554445556666334566666666665544443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.55  E-value=0.00014  Score=76.87  Aligned_cols=153  Identities=15%  Similarity=0.196  Sum_probs=91.6

Q ss_pred             CCeEEEEecCCeEEEEEecCCCceeEeecccC---ccCcEE--EEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEec
Q 004581           97 DRRVALACDDGCVRIYRITDSDELIYHRSLPR---VSGRVL--SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG  171 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~--~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  171 (744)
                      +..+..++.++.|.-.|..+++.+-....-..   +...+.  .++.. ++..++.++.++.|..+|.++|+.+.+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45778888889999999987776532111110   000111  11111 2267888888999999999999999888742


Q ss_pred             CCCCCCCCceeEE-EEEEecCCeEEEEc---------CCCCEEEEeCCCcceEEEeeccccc------------------
Q 004581          172 LGGLGSGPELCIW-SLLSLRCGTLVSAD---------STGSVQFWDSRHGTLLQAHSFHKGD------------------  223 (744)
Q Consensus       172 ~~~~~~~~~~~v~-~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~h~~~------------------  223 (744)
                      ...   .....+. +..+. ++.++.++         .+|.+...|..+|+.+..+......                  
T Consensus       140 ~~~---~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         140 DQV---PPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCc---CcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            110   0000111 11222 35555554         3678999999999988777542110                  


Q ss_pred             --e-eEEEEcCCCCEEEeecCCC------------------eEEEEEcccCc
Q 004581          224 --V-NALAAAPSHNRVFSTGSDG------------------QVILYKASCES  254 (744)
Q Consensus       224 --v-~~l~~~~~~~~l~~~~~dg------------------~i~iw~~~~~~  254 (744)
                        | ...++.+.+.+++.++.++                  .|.-+|..+++
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence              1 1345555567788887665                  57777777766

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.2e-05  Score=76.02  Aligned_cols=269  Identities=13%  Similarity=0.089  Sum_probs=155.0

Q ss_pred             EEEEeCCCcceEEEeeccccceeEEEEcCCCC-EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccC
Q 004581          203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN-RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH  281 (744)
Q Consensus       203 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  281 (744)
                      +++.+..+.+..+-+..|...|..++|+|..+ ++..++.+.+|++.|+++...                 +.....+ .
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----------------vssy~a~-~  236 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----------------VSSYIAY-N  236 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----------------eeheecc-C
Confidence            66666666666667788889999999999877 677899999999999998762                 3444445 6


Q ss_pred             cceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCC-----cccCCC
Q 004581          282 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSP-----HEICPA  356 (744)
Q Consensus       282 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~-----~~~~~~  356 (744)
                      .+.+.+|.                                .....++..|-..|.|.+||++.......     ....+.
T Consensus       237 ~~wSC~wD--------------------------------lde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv  284 (463)
T KOG1645|consen  237 QIWSCCWD--------------------------------LDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPV  284 (463)
T ss_pred             Cceeeeec--------------------------------cCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcc
Confidence            78888875                                22335899999999999999986443211     111111


Q ss_pred             CCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 004581          357 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS  436 (744)
Q Consensus       357 ~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~  436 (744)
                      ..   ...+..-...+.+-+++.....+..|.+.......           .++.++.  ..+...+++..+-.+.+..+
T Consensus       285 ~~---i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~-----------p~vlele--~pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  285 HK---IAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECL-----------PCVLELE--PPGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             ee---ecccCccccccccceEEeeehhhhhhhhhccccCC-----------CcccccC--CCcceeeeeecCccceEEEE
Confidence            11   11111123445566777777777788877655331           1222222  12333344444433333322


Q ss_pred             -cCC----ceE--EEEeecCCCCCceEEeeeccCCccc---ccccEEEEeeCCCEEEEE-eCCCcEEEEEccCCceeeee
Q 004581          437 -DHV----KPS--LFELKKGKVGQGEWIINKRQLPRKL---QFAHSMIFSYDSSQLIIA-GHDRRIYVVDVSSSELLHTF  505 (744)
Q Consensus       437 -~~~----~v~--l~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~spd~~~l~~~-~~dg~i~v~d~~~~~~~~~~  505 (744)
                       ..+    .++  +-++.. ..+..+|..+........   ..-..+.-.++.++++.. +..+.+.+||..+++.++++
T Consensus       349 yRs~pn~p~~r~il~~~d~-~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l  427 (463)
T KOG1645|consen  349 YRSNPNFPQSRFILGRIDF-RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTL  427 (463)
T ss_pred             ecCCCCCccceeeeeeecc-ccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeec
Confidence             110    000  111111 223333333322111000   011122224566766554 44678999999999999999


Q ss_pred             ccCcccccccCCCCCCceEEEEECC-CC-CEEEEEeCCCcEEEEECCC
Q 004581          506 TPCREEHDREIQPSEPPITKMFTSS-DG-QWLAAVNCFGDVYIFNLEI  551 (744)
Q Consensus       506 ~~~~~~~~~~~~~~~~~i~~l~~sp-dg-~~las~~~dg~i~iwd~~~  551 (744)
                      .-            ..+|..++... +| .||++- .|..++||..+.
T Consensus       428 ~~------------~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  428 AL------------SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             cc------------CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence            85            67788877544 33 356555 466788887653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.52  E-value=1.6e-06  Score=90.30  Aligned_cols=180  Identities=15%  Similarity=0.168  Sum_probs=137.1

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      ...++.|+....+..+|+.+.+..+...--...|.-|.-+  +                                     
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-------------------------------------  187 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-------------------------------------  187 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-------------------------------------
Confidence            4568888888999999999988877765444456555543  3                                     


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC---------CCeEE
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS---------DGYIR  155 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~---------dg~i~  155 (744)
                                   +.+.+|...|+|.+-|..+-+..   +++..|++.|..+..  .|+.|++++.         |.-|+
T Consensus       188 -------------r~lf~G~t~G~V~LrD~~s~~~i---ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fvk  249 (1118)
T KOG1275|consen  188 -------------RNLFCGDTRGTVFLRDPNSFETI---HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVK  249 (1118)
T ss_pred             -------------cEEEeecccceEEeecCCcCcee---eeeeccccceeeeec--cCCeEEEeecccccccccccchhh
Confidence                         58999999999999998866665   999999999976555  6899999975         56789


Q ss_pred             EEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCCEEEEeCCC-cce---EEEeeccccceeEEEE
Q 004581          156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRH-GTL---LQAHSFHKGDVNALAA  229 (744)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~vwd~~~-~~~---~~~~~~h~~~v~~l~~  229 (744)
                      |||++..+.+.-+..+.        . -.-+.|+|.-  +++.++..|...+-|..+ +.+   +..+......+..+.+
T Consensus       250 VYDLRmmral~PI~~~~--------~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi  320 (1118)
T KOG1275|consen  250 VYDLRMMRALSPIQFPY--------G-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI  320 (1118)
T ss_pred             hhhhhhhhccCCccccc--------C-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence            99998877766555321        1 1446777765  789999999999998332 111   2233333455999999


Q ss_pred             cCCCCEEEeecCCCeEEEEEc
Q 004581          230 APSHNRVFSTGSDGQVILYKA  250 (744)
Q Consensus       230 ~~~~~~l~~~~~dg~i~iw~~  250 (744)
                      +++++.++.|..+|.|.+|.-
T Consensus       321 Ssn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  321 SSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cCCCceEEEecccCcEeeecC
Confidence            999999999999999999973

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=2.2e-05  Score=81.69  Aligned_cols=195  Identities=12%  Similarity=0.113  Sum_probs=133.0

Q ss_pred             CCCCCCeeEEecCCCeEEEEEccCCceeEEeeccCcc-eeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCcc
Q 004581            1 MGLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFS-IWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSE   79 (744)
Q Consensus         1 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~-i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (744)
                      +++.++.++.|+.+|.|.+.| ...+.++.++++... |..+-...+.                                
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~--------------------------------   77 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQ--------------------------------   77 (933)
T ss_pred             EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCc--------------------------------
Confidence            356788899999999999988 455666788888777 4333333332                                


Q ss_pred             CCCCCCcccccccccccCCeEEEEecCC-----eEEEEEecCC--Cc-eeEe--ecccC-----ccCcEEEEEEecCCCE
Q 004581           80 SENDSDSDELHEQSVVEDRRVALACDDG-----CVRIYRITDS--DE-LIYH--RSLPR-----VSGRVLSVTWSADGNM  144 (744)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~la~~~~dg-----~i~iwd~~~~--~~-~~~~--~~~~~-----h~~~V~~~~~s~dg~~  144 (744)
                                        .+|++-++|+     .|+||+++.-  .. ..+.  +.+..     ...++.+++.|.+-+.
T Consensus        78 ------------------~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~  139 (933)
T KOG2114|consen   78 ------------------NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT  139 (933)
T ss_pred             ------------------eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence                              3566665554     5999999722  11 2222  22223     3567899999999999


Q ss_pred             EEEEeCCCeEEEEEcc--CCceE-EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcc-eEEEeec
Q 004581          145 LYSGSSDGYIRSWDAK--LGYEI-YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGT-LLQAHSF  219 (744)
Q Consensus       145 l~t~~~dg~i~vwd~~--~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~  219 (744)
                      +|.|-.+|.|..+.=.  ..+-. ..+.       .....+|+.+++..++ .++.......|.+|.+.... ....+..
T Consensus       140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~  212 (933)
T KOG2114|consen  140 IVCGFTNGLVICYKGDILRDRGSRQDYS-------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN  212 (933)
T ss_pred             EEEEecCcEEEEEcCcchhccccceeee-------ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc
Confidence            9999999999988521  11111 1111       1466899999999999 43444456679999988433 2566888


Q ss_pred             cccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          220 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       220 h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      |..++.|-.+++....+++++. .-+.+|+.....
T Consensus       213 ~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~  246 (933)
T KOG2114|consen  213 NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG  246 (933)
T ss_pred             CCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence            8999999999987665777654 459999887654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.46  E-value=0.0039  Score=66.80  Aligned_cols=400  Identities=12%  Similarity=0.087  Sum_probs=216.7

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC------CEEEEEeCCCeEEEEE-ccCCceEEEEEe
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG------NMLYSGSSDGYIRSWD-AKLGYEIYRITV  170 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg------~~l~t~~~dg~i~vwd-~~~~~~~~~~~~  170 (744)
                      ..++.++.++.+...++..+. +.. ..-..-+..|.|+.++|-|      ++++.|..+..+.+.- ..+...+.....
T Consensus       500 sqVvvA~~~~~l~y~~i~~~~-l~e-~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l  577 (1096)
T KOG1897|consen  500 SQVVVAGGGLALFYLEIEDGG-LRE-VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL  577 (1096)
T ss_pred             eEEEEecCccEEEEEEeeccc-eee-eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc
Confidence            367777777777777776444 211 1112235689999999753      2678887765554433 333333333221


Q ss_pred             cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeC--CCcceEEEe--eccccceeEEEEcCCCCEEEeecCCCeE
Q 004581          171 GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDS--RHGTLLQAH--SFHKGDVNALAAAPSHNRVFSTGSDGQV  245 (744)
Q Consensus       171 ~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~--~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~~~~~dg~i  245 (744)
                      +.    ...+..|....|-.|+ +|+++..||.+.-+.+  .+|+.-..-  ..-..++.--.|+..++.-+.+..|.-.
T Consensus       578 ~~----~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~  653 (1096)
T KOG1897|consen  578 SG----EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPT  653 (1096)
T ss_pred             CC----CccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCE
Confidence            10    1234455555666655 8999999999876644  445433222  2224566666676655544444456666


Q ss_pred             EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581          246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV  325 (744)
Q Consensus       246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  325 (744)
                      .+|..+..-.                 ...+  .-..+..++-   ++     .                      ....
T Consensus       654 viY~~n~kLv-----------------~spl--s~kev~~~c~---f~-----s----------------------~a~~  684 (1096)
T KOG1897|consen  654 VIYSSNGKLV-----------------YSPL--SLKEVNHMCP---FN-----S----------------------DAYP  684 (1096)
T ss_pred             EEEecCCcEE-----------------Eecc--chHHhhhhcc---cc-----c----------------------ccCC
Confidence            6665544221                 0000  0011111110   00     0                      0011


Q ss_pred             cEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCe----------------EEEEEe
Q 004581          326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCR----------------LDILSV  389 (744)
Q Consensus       326 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----------------i~i~~~  389 (744)
                      +.|+++. .+.+.+.-+...+.+...+.   |   .....+.+++.+....+...+..                +++++-
T Consensus       685 d~l~~~~-~~~l~i~tid~iqkl~irtv---p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~  757 (1096)
T KOG1897|consen  685 DSLASAN-GGALTIGTIDEIQKLHIRTV---P---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ  757 (1096)
T ss_pred             ceEEEec-CCceEEEEecchhhcceeee---c---CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecC
Confidence            2455554 44566666666555444331   1   11334455665544433322221                112211


Q ss_pred             eccCCcccCCCCCCCCCcceEEEEEecCCC---CeEEEEEcCC-CCEEEEEc-----------CCceEEEEeecCCCCCc
Q 004581          390 RLENNVESRSSSGGHASTSLLVQVKSKASR---KIICSTISNS-GMLFAYSD-----------HVKPSLFELKKGKVGQG  454 (744)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~-g~~la~~~-----------~~~v~l~~~~~~~~~~~  454 (744)
                      ++.+               .+...+.....   .+.++.|..| +.++++|+           .|.+.+|.+.. .+..+
T Consensus       758 nTf~---------------vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~  821 (1096)
T KOG1897|consen  758 NTFE---------------VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLE  821 (1096)
T ss_pred             Ccee---------------EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCcee
Confidence            1111               11111222222   3444557777 67777653           35677777765 22222


Q ss_pred             eEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCE
Q 004581          455 EWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW  534 (744)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~  534 (744)
                      +  +......+   .+.++.. -+|++||.-  +..|++|++.+.+.++.-..           +..++..+...-.|..
T Consensus       822 ~--v~e~~v~G---av~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~-----------~~~~~~aL~l~v~gde  882 (1096)
T KOG1897|consen  822 L--VAETVVKG---AVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECN-----------ISNPIIALDLQVKGDE  882 (1096)
T ss_pred             e--eeeeeecc---ceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhc-----------ccCCeEEEEEEecCcE
Confidence            2  22222222   3444332 267777644  45799999988866665555           7888999999999999


Q ss_pred             EEEEeCCCcEEEEECC--CcceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          535 LAAVNCFGDVYIFNLE--IQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       535 las~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      +|+|+.-+.+.+....  .+.....-...+....+++.+-.  ++.++.+..+|.+++-..++.
T Consensus       883 I~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~--~d~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  883 IAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD--DDTYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             EEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec--CceEEeecccccEEEEEecCC
Confidence            9999988877765554  44455555555667888888884  566777788888888766644

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=6.3e-05  Score=78.46  Aligned_cols=129  Identities=7%  Similarity=0.013  Sum_probs=88.8

Q ss_pred             CCCeEEEEEcCCCCEEEEE-cCCceEEEEeecC-CCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581          418 SRKIICSTISNSGMLFAYS-DHVKPSLFELKKG-KVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d  495 (744)
                      ..++.+++++.+-+.+|+| .+|.|.++.-+.- +.+.+.     .-......+|+.++|..|++.++.+.....|.+|.
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-----~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~  199 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-----DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYS  199 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-----eeeccCCCCceeeEEecCCceeEEEEecceeEEEE
Confidence            4678899999999999998 8888888764320 112211     11122234899999999998844444455699999


Q ss_pred             ccCCc-eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 004581          496 VSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG  563 (744)
Q Consensus       496 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~  563 (744)
                      +.... ....+..           |...+.+-.+++....+++++.. .|.+|+.+...+...+...+.
T Consensus       200 l~gr~p~~~~ld~-----------~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  200 LSGRTPSLKVLDN-----------NGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             ecCCCcceeeecc-----------CCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCe
Confidence            97333 2444555           78888999998877656666544 499999998888777775453

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.42  E-value=0.0013  Score=66.58  Aligned_cols=71  Identities=17%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      .+.+++++|+...|+.|+.||.|.+||...+....+ +            ..-..+.++|+|+|.++++|+..|.+.+||
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k------------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K------------AEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e------------ecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            799999999999999999999999999876533222 2            355688999999999999999999999999


Q ss_pred             CCCc
Q 004581          549 LEIQ  552 (744)
Q Consensus       549 ~~~~  552 (744)
                      +.-.
T Consensus       328 ~ALs  331 (545)
T PF11768_consen  328 MALS  331 (545)
T ss_pred             eecC
Confidence            9643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=5.7e-05  Score=78.14  Aligned_cols=135  Identities=19%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             cCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581           96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (744)
                      .+..+|.|+.+|.|++++.. +..    .+...|...      ..+|.+++||+.||.|.|-.+-+.+....+.      
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~-~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d------  110 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQ-GNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD------  110 (846)
T ss_pred             hcceeeeccccceEEEEecC-Ccc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe------
Confidence            35699999999999999986 222    223345444      6789999999999999999999988887775      


Q ss_pred             CCCCceeEEEEEEecC------CeEEEEcCCCCEEEEeCCC-cceEE-EeeccccceeEEEEcCCCCEEEeecCCCeEEE
Q 004581          176 GSGPELCIWSLLSLRC------GTLVSADSTGSVQFWDSRH-GTLLQ-AHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL  247 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~------~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~i  247 (744)
                         ...++.+++++|+      +++++|+..| +.++.-.- |.... .+..-.++|.++.|.  |++++=++.+| |++
T Consensus       111 ---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  111 ---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             ---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence               6678999999998      2799999999 77765332 11111 355567899999997  77888887777 999


Q ss_pred             EEcccCc
Q 004581          248 YKASCES  254 (744)
Q Consensus       248 w~~~~~~  254 (744)
                      ||....+
T Consensus       184 yd~~~~~  190 (846)
T KOG2066|consen  184 YDTPTRQ  190 (846)
T ss_pred             Eeccccc
Confidence            9998865

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.40  E-value=5e-05  Score=77.48  Aligned_cols=117  Identities=19%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEe
Q 004581          129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWD  207 (744)
Q Consensus       129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd  207 (744)
                      |...|.--+++..+++++.|+.-|.+.+|+-..|... .++.+      +....+..+..+++. ++++|+..|.|.++-
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q  104 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQ  104 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-ccccc------CccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence            4456666778888999999999999999997665543 33321      344556666677777 778888899999998


Q ss_pred             CCCcce---EEE--e-eccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581          208 SRHGTL---LQA--H-SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       208 ~~~~~~---~~~--~-~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      +..+..   ...  . +.|...|++++|++++..+++|...|+|..-.++.
T Consensus       105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            775322   111  1 23778999999999999999999999999988877

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.36  E-value=2.2e-05  Score=81.17  Aligned_cols=108  Identities=13%  Similarity=0.120  Sum_probs=88.7

Q ss_pred             EEEEecCCCEEEEEeC----CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCC
Q 004581          135 SVTWSADGNMLYSGSS----DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR  209 (744)
Q Consensus       135 ~~~~s~dg~~l~t~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~  209 (744)
                      -..|+|...++|+++-    .|.|-|+- ++|++.+...         .+-.+.+++|+|.. .|+.|-..|.+.+|...
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEecC
Confidence            3568898888888763    57888884 5777554443         34456779999999 78899999999999998


Q ss_pred             CcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581          210 HGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       210 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      +.+.-.....|+.+|..+.||++|..++++..-|.+.+|....
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            7776666678999999999999999999999999999998874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.35  E-value=7.1e-05  Score=70.44  Aligned_cols=207  Identities=16%  Similarity=0.180  Sum_probs=134.3

Q ss_pred             CCCCCCeeEEe-----cCCCeEEEEEcc-CCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCC
Q 004581            1 MGLPGGRLFSS-----SIDGSVSEWDLY-DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDD   74 (744)
Q Consensus         1 ~~~~~~~l~~~-----~~d~~i~iwd~~-~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (744)
                      ++++|.+|++.     ...|.|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++...  ..+..           
T Consensus        58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG--I~Thp-----------  124 (305)
T PF07433_consen   58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG--IETHP-----------  124 (305)
T ss_pred             EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC--CccCc-----------
Confidence            46677777775     557899999999 778888999988888889999999888766221  10000           


Q ss_pred             CcCccCCCCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecc--cCccCcEEEEEEecCCCEEEEEeCCC
Q 004581           75 HETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSL--PRVSGRVLSVTWSADGNMLYSGSSDG  152 (744)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~V~~~~~s~dg~~l~t~~~dg  152 (744)
                       .                  .....|-..+-+-.+..-|..+++.+.. ..+  .-|+-.|..+++.++|..++..-..|
T Consensus       125 -d------------------~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg  184 (305)
T PF07433_consen  125 -D------------------SGRAKLNLDTMQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDGDGTVAFAMQYQG  184 (305)
T ss_pred             -c------------------cCceecChhhcCCceEEEecCCCceeee-eecCccccccceeeEEecCCCcEEEEEecCC
Confidence             0                  0001333444555666777776665532 455  45888999999999998776654332


Q ss_pred             -------eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eE-EEEcCCCCEEEEeCCCcceEEEeeccccc
Q 004581          153 -------YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGD  223 (744)
Q Consensus       153 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~vwd~~~~~~~~~~~~h~~~  223 (744)
                             -|-+++  .++.+..+..+. .........+-+|++++++ .+ +++=.-+.+.+||..+++.+....  -.+
T Consensus       185 ~~~~~~PLva~~~--~g~~~~~~~~p~-~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D  259 (305)
T PF07433_consen  185 DPGDAPPLVALHR--RGGALRLLPAPE-EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPD  259 (305)
T ss_pred             CCCccCCeEEEEc--CCCcceeccCCh-HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCc
Confidence                   233443  333333333211 1112455789999999998 44 455567889999999999987765  356


Q ss_pred             eeEEEEcCCCCEEEeecCCCeEEE
Q 004581          224 VNALAAAPSHNRVFSTGSDGQVIL  247 (744)
Q Consensus       224 v~~l~~~~~~~~l~~~~~dg~i~i  247 (744)
                      +..++-.+++ ++++.+ .|.+..
T Consensus       260 ~cGva~~~~~-f~~ssG-~G~~~~  281 (305)
T PF07433_consen  260 ACGVAPTDDG-FLVSSG-QGQLIR  281 (305)
T ss_pred             eeeeeecCCc-eEEeCC-CccEEE
Confidence            7788887777 455543 454433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.34  E-value=0.0032  Score=60.33  Aligned_cols=81  Identities=19%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             cccEEEEeeCCCEEEEEeC---CC-------cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCC-EEEE
Q 004581          469 FAHSMIFSYDSSQLIIAGH---DR-------RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ-WLAA  537 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~---dg-------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~las  537 (744)
                      .-.-+++++..++|.+.-.   +|       .|.++|+++++.+..+..            ..++.+|++|.|.+ +|.+
T Consensus       239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------EHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------EEEESEEEEESSSS-EEEE
T ss_pred             ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------CCccceEEEccCCCcEEEE
Confidence            4456788877776665422   12       588999999999999985            55688999999887 5555


Q ss_pred             Ee-CCCcEEEEECCCcceEEEEecC
Q 004581          538 VN-CFGDVYIFNLEIQRQHWFISRL  561 (744)
Q Consensus       538 ~~-~dg~i~iwd~~~~~~~~~~~~~  561 (744)
                      .+ .++.|.+||..+++....+...
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EETTTTEEEEEETTT--EEEEE---
T ss_pred             EcCCCCeEEEEeCcCCcEEeehhcc
Confidence            44 5789999999999998887654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=5.8e-07  Score=92.86  Aligned_cols=137  Identities=17%  Similarity=0.175  Sum_probs=101.6

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC--eEEEEEccC-CceEEEEEecCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG--YIRSWDAKL-GYEIYRITVGLGG  174 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg--~i~vwd~~~-~~~~~~~~~~~~~  174 (744)
                      +.|++|+..|.|++|++.+|...   ....+|..+|+.+.=+.||..+++.+.-.  -..+|++.+ +...+.+.     
T Consensus      1114 ~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----- 1185 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----- 1185 (1516)
T ss_pred             ceEEeeeccceEEEEEccCcccc---ccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-----
Confidence            69999999999999999988776   77889999999999999999888766533  468899854 44445544     


Q ss_pred             CCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEe-ec---cccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          175 LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAH-SF---HKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       175 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~-~~---h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                             .-.++.|+... .-+.|+......+||++++..+.++ ..   ....-.+..|+|+..+++   .||  .+||
T Consensus      1186 -------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWD 1253 (1516)
T KOG1832|consen 1186 -------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWD 1253 (1516)
T ss_pred             -------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeee
Confidence                   23457787665 3345555567899999998877663 21   222337889999988776   355  5899


Q ss_pred             cccCc
Q 004581          250 ASCES  254 (744)
Q Consensus       250 ~~~~~  254 (744)
                      .+..+
T Consensus      1254 vR~~~ 1258 (1516)
T KOG1832|consen 1254 VRIPE 1258 (1516)
T ss_pred             eccHH
Confidence            88754

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00014  Score=74.34  Aligned_cols=138  Identities=22%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             CCCCeeEEecCCCeEEEEEccCCceeE-EeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDLKQKI-VLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      ..++.|+.|+.-|.+.+|+=.++..+. ...+-.+.+....+|++.                                  
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e----------------------------------   88 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE----------------------------------   88 (726)
T ss_pred             cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh----------------------------------
Confidence            346789999999999999977765443 333445566667788877                                  


Q ss_pred             CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCc--eeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 004581           82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDE--LIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWD  158 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd  158 (744)
                                      .++|+|+..|.|.++-+..+..  +.+...+. .|..+|+|++|++|+..|++|...|.|..-.
T Consensus        89 ----------------~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen   89 ----------------YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ----------------HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence                            4778889999999998875332  22223332 4788999999999999999999999999988


Q ss_pred             ccCC----ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEc
Q 004581          159 AKLG----YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSAD  198 (744)
Q Consensus       159 ~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~  198 (744)
                      +.+.    ...+.+.        .....|..+.+...-.|++..
T Consensus       153 L~s~~~~~~~~q~il--------~~ds~IVQlD~~q~~LLVStl  188 (726)
T KOG3621|consen  153 LDSRQAFLSKSQEIL--------SEDSEIVQLDYLQSYLLVSTL  188 (726)
T ss_pred             echhhhhccccceee--------ccCcceEEeecccceehHhhh
Confidence            8761    1112222        356777777776443444443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.27  E-value=0.00026  Score=76.99  Aligned_cols=144  Identities=16%  Similarity=0.257  Sum_probs=93.6

Q ss_pred             cccEEEEeeCCCEEEEE-----eCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe---C
Q 004581          469 FAHSMIFSYDSSQLIIA-----GHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---C  540 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~---~  540 (744)
                      .-++|.|--||+++|+.     .....|+|||.+ |.+-.+-..           ..+.-.+++|-|.|.++|+.-   .
T Consensus       197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~-----------~~~l~~~LsWkPsgs~iA~iq~~~s  264 (1265)
T KOG1920|consen  197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP-----------VEGLQHSLSWKPSGSLIAAIQCKTS  264 (1265)
T ss_pred             CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc-----------ccccccceeecCCCCeEeeeeecCC
Confidence            45679999999999984     223789999976 554333332           344556899999999999864   4


Q ss_pred             CCcEEEEECCCcceEE-EEecC-CCCceeEEeecCCCCCeEEEE---ecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581          541 FGDVYIFNLEIQRQHW-FISRL-EGASVTAAGFPPQNNNVLIIT---TSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE  615 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~-~~~~~-~~~~v~~l~~sp~~~~~l~~~---~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~  615 (744)
                      |+.|.+|.-++.+.-. .++-. ....+..++|+. ++..||+.   .....|++|-+.+-.   |.......++...  
T Consensus       265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh---WYLKq~l~~~~~~--  338 (1265)
T KOG1920|consen  265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH---WYLKQELQFSQKA--  338 (1265)
T ss_pred             CCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE---EEEEEEEeccccc--
Confidence            5579999877655421 12211 123489999999 99999984   344469999988764   4333222222211  


Q ss_pred             CCCceEEEEeCCCCCCcEEEEE
Q 004581          616 FPGEVIGLSFSPSPSSSSVIIY  637 (744)
Q Consensus       616 ~~~~v~~i~fspdg~~~~~~~~  637 (744)
                            .+.|+|- .+..+.++
T Consensus       339 ------~~~W~p~-~~~~L~v~  353 (1265)
T KOG1920|consen  339 ------LLMWDPV-TEKTLHVL  353 (1265)
T ss_pred             ------cccccCC-CceeEEEE
Confidence                  1777773 55555555

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=1.4e-06  Score=90.08  Aligned_cols=119  Identities=19%  Similarity=0.193  Sum_probs=94.1

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-e-EEEEcCCC
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTG  201 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~dg  201 (744)
                      +.|..|....+|++|+-+.+.|+.|+..|.|+++++.+|.......        .|...|+-+.-+.|| . |.+++...
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--------cH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN--------CHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc--------ccccccccccccCCcceeeeeccccC
Confidence            6777889999999999999999999999999999999998877776        799999999999999 4 44444333


Q ss_pred             -CEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          202 -SVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       202 -~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                       -..+|++.+ +...+++..    -.++.|+.....-+.|+.-....+||+.++.
T Consensus      1167 PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred             chHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence             578999875 555666654    3578888765555556565678999998865

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=5.1e-05  Score=78.52  Aligned_cols=185  Identities=12%  Similarity=0.157  Sum_probs=120.3

Q ss_pred             CCeEEEEEcCCCCEEEEE-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581          419 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~  497 (744)
                      ..+.|++++  +++++.| -.|.+++++....   ..      . ...|...      .-+|.++++++.||+|.|..+.
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---~~------~-~~~~s~~------~~~Gey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN---PK------T-NFDHSSS------ILEGEYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc---cc------c-ccccccc------ccCCceEEEecCCCcEEEeecc
Confidence            334555554  5788887 5568888877541   11      1 1111111      4589999999999999999999


Q ss_pred             CCceeeeeccCcccccccCCCCCCceEEEEECCC-----CCEEEEEeCCCcEEEEECCCc--ceEEEEecCCCCceeEEe
Q 004581          498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSD-----GQWLAAVNCFGDVYIFNLEIQ--RQHWFISRLEGASVTAAG  570 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----g~~las~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~  570 (744)
                      +.+...++.            ...++.+++++||     .+.+++|+..| +.++.-.=.  +....+.. ..++|.++.
T Consensus       102 ~~~~~~~~d------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~-~eG~I~~i~  167 (846)
T KOG2066|consen  102 TDDEITQYD------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE-GEGPIHSIK  167 (846)
T ss_pred             CCccceeEe------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec-CccceEEEE
Confidence            888888777            4778999999998     56889999888 888765311  11112222 237999999


Q ss_pred             ecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcC-ceEEEEe
Q 004581          571 FPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA-RAMCVID  646 (744)
Q Consensus       571 ~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~-~~~~~~~  646 (744)
                      |   .|+++|-++++| |+|||+.+++...    + ...+.......---..+.|.++  ...++-|++ .++|.|.
T Consensus       168 W---~g~lIAWand~G-v~vyd~~~~~~l~----~-i~~p~~~~R~e~fpphl~W~~~--~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  168 W---RGNLIAWANDDG-VKVYDTPTRQRLT----N-IPPPSQSVRPELFPPHLHWQDE--DRLVIGWGDSVKICSIK  233 (846)
T ss_pred             e---cCcEEEEecCCC-cEEEeccccceee----c-cCCCCCCCCcccCCCceEecCC--CeEEEecCCeEEEEEEe
Confidence            9   579999999888 9999999885211    0 0111111111223456788775  344444543 4577777

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.22  E-value=0.00059  Score=70.77  Aligned_cols=158  Identities=16%  Similarity=0.060  Sum_probs=103.3

Q ss_pred             eEEEEEecCCCCeEEEEEcCCCCEEEEEc---CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581          409 LLVQVKSKASRKIICSTISNSGMLFAYSD---HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       409 ~~~~~~~~~~~~i~~~~~s~~g~~la~~~---~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~  485 (744)
                      ...++...  .+...++++|+|+++.++.   .....+-.+...+.. .+.-+.         .-..-++.++|++... 
T Consensus       227 V~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfn---------i~~iea~vkdGK~~~V-  293 (635)
T PRK02888        227 VAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFN---------IARIEEAVKAGKFKTI-  293 (635)
T ss_pred             EEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEc---------hHHHHHhhhCCCEEEE-
Confidence            45555554  3567788999999987753   211122222110000 000000         0001134568887776 


Q ss_pred             eCCCcEEEEEccC-----CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEEECCCcce-----
Q 004581          486 GHDRRIYVVDVSS-----SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ-----  554 (744)
Q Consensus       486 ~~dg~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iwd~~~~~~-----  554 (744)
                       .++.|.+.|..+     .+.+..+..            ......+++||||+++++++ .+.+|.|+|+++.+.     
T Consensus       294 -~gn~V~VID~~t~~~~~~~v~~yIPV------------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        294 -GGSKVPVVDGRKAANAGSALTRYVPV------------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             -CCCEEEEEECCccccCCcceEEEEEC------------CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence             367899999987     456666664            66678999999999988776 488999999987653     


Q ss_pred             -------EEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCC
Q 004581          555 -------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA  595 (744)
Q Consensus       555 -------~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~  595 (744)
                             ...+..  +..+...+|.+ +|+...+-.-|.+|..||+..
T Consensus       361 ~~~~~~vvaevev--GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPEL--GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeecc--CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                   233322  34677889999 888888888999999999986

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.16  E-value=0.0067  Score=64.29  Aligned_cols=154  Identities=14%  Similarity=0.112  Sum_probs=91.7

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCcc---CcEE-EEEEecCCCEEEEEe---------CCCeEEEEEccCCce
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVS---GRVL-SVTWSADGNMLYSGS---------SDGYIRSWDAKLGYE  164 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~---~~V~-~~~~s~dg~~l~t~~---------~dg~i~vwd~~~~~~  164 (744)
                      ..++.++.++.|+-+|..+++.+-.. .+..+.   ..+. +..+. + ..++.++         .++.+..+|.++|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~-~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKF-GNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeee-cCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            47888889999999999888776321 222220   0011 12222 2 4454443         368899999999999


Q ss_pred             EEEEEecCCCC-CCC-----------CceeEE-EEEEec-CCeEEEEcCCC------------------CEEEEeCCCcc
Q 004581          165 IYRITVGLGGL-GSG-----------PELCIW-SLLSLR-CGTLVSADSTG------------------SVQFWDSRHGT  212 (744)
Q Consensus       165 ~~~~~~~~~~~-~~~-----------~~~~v~-~~~~~~-~~~l~s~~~dg------------------~i~vwd~~~~~  212 (744)
                      +.++....... ...           ....++ +.++.+ .++++.++.++                  .|.-.|.++|+
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            98887521100 000           001122 233443 34777777665                  69999999999


Q ss_pred             eEEEeecccccee------EEEEc----CCCC---EEEeecCCCeEEEEEcccCc
Q 004581          213 LLQAHSFHKGDVN------ALAAA----PSHN---RVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       213 ~~~~~~~h~~~v~------~l~~~----~~~~---~l~~~~~dg~i~iw~~~~~~  254 (744)
                      .+..++.-.....      ...+.    -++.   .++.++.+|.+..+|..+++
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence            9877653211111      01111    1333   57788889999999999887

The alignment model contains an 8-bladed beta-propeller.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.15  E-value=0.019  Score=61.78  Aligned_cols=469  Identities=15%  Similarity=0.087  Sum_probs=223.7

Q ss_pred             CCCCeeEEecCCCeEEEEEccCCcee-------EEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDLKQK-------IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDH   75 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (744)
                      .+++.|++|+..|.=.+-.+.+-.-.       .++. .-++|..|+.-...+..                         
T Consensus       315 L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~-------------------------  368 (1096)
T KOG1897|consen  315 LDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQG-------------------------  368 (1096)
T ss_pred             ccCceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccC-------------------------
Confidence            57888999998887777766553222       2333 34677777765433110                         


Q ss_pred             cCccCCCCCCcccccccccccCCeEEEE---ecCCeEEEEEecCCCceeEeecccCccCcEEEEE--Eec--CCCEEEEE
Q 004581           76 ETSESENDSDSDELHEQSVVEDRRVALA---CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVT--WSA--DGNMLYSG  148 (744)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~la~~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~--~s~--dg~~l~t~  148 (744)
                                           ...++++   ..||+++|..-.-+-.......+.| -..+..+.  +++  |. +|+.+
T Consensus       369 ---------------------q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvls  425 (1096)
T KOG1897|consen  369 ---------------------QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLS  425 (1096)
T ss_pred             ---------------------CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEE
Confidence                                 0244444   3689999987542211111234444 33566666  433  33 55544


Q ss_pred             eCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeE
Q 004581          149 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNA  226 (744)
Q Consensus       149 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  226 (744)
                      -.+ .-++..+. ++.......       +.......+..+. .+ .|+-.. ...||+++-.  ..+..+.. .+.++.
T Consensus       426 f~~-eTrvl~i~-~e~ee~~~~-------gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~-p~~~ti  492 (1096)
T KOG1897|consen  426 FIS-ETRVLNIS-EEVEETEDP-------GFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRP-PGKITI  492 (1096)
T ss_pred             ecc-ceEEEEEc-cceEEeccc-------cccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccC-CCceEE
Confidence            333 44555552 221111110       1112222222221 11 222222 2346666544  23334443 345555


Q ss_pred             EEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCccccccc
Q 004581          227 LAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRS  306 (744)
Q Consensus       227 l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~  306 (744)
                      ...+.+...++.++.++.+...++.....                ...........|.|+.++         |-+..   
T Consensus       493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l----------------~e~~~~~~e~evaCLDis---------p~~d~---  544 (1096)
T KOG1897|consen  493 GVVSANASQVVVAGGGLALFYLEIEDGGL----------------REVSHKEFEYEVACLDIS---------PLGDA---  544 (1096)
T ss_pred             EEEeecceEEEEecCccEEEEEEeeccce----------------eeeeeheecceeEEEecc---------cCCCC---
Confidence            55555666788887777777777665441                011223346778888886         32210   


Q ss_pred             CCCCCCccccccccccCCCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEE--EeCCeE
Q 004581          307 RGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLV--QYSCRL  384 (744)
Q Consensus       307 ~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~~i  384 (744)
                                     ....++++.|..+..+.+.-.........+.....+.. | ..+--..+-.|..+|.  .+++.+
T Consensus       545 ---------------~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~i-P-RSIl~~~~e~d~~yLlvalgdG~l  607 (1096)
T KOG1897|consen  545 ---------------PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEII-P-RSILLTTFEGDIHYLLVALGDGAL  607 (1096)
T ss_pred             ---------------CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCcc-c-hheeeEEeeccceEEEEEcCCceE
Confidence                           01123677777666444332221111111110001100 1 1122223333344443  456666


Q ss_pred             EEEEeeccCCcccCCC--CCCCCCcceEEEEEecCCCCeEEEE------EcCCC------------------------CE
Q 004581          385 DILSVRLENNVESRSS--SGGHASTSLLVQVKSKASRKIICST------ISNSG------------------------ML  432 (744)
Q Consensus       385 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~------~s~~g------------------------~~  432 (744)
                      .-+.++..++......  ..| ..|..+.++.......+.++.      ++.++                        ..
T Consensus       608 ~~fv~d~~tg~lsd~Kk~~lG-t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~  686 (1096)
T KOG1897|consen  608 LYFVLDINTGQLSDRKKVTLG-TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDS  686 (1096)
T ss_pred             EEEEEEcccceEccccccccC-CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCce
Confidence            6666665554432221  112 223455566555444443322      11122                        34


Q ss_pred             EEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCC--------------CcEEEEEccC
Q 004581          433 FAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHD--------------RRIYVVDVSS  498 (744)
Q Consensus       433 la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~d--------------g~i~v~d~~~  498 (744)
                      ++.+..+.+++..++.   -.+ ..+++..+.   .....+++.+....+++.+..              ..++++|-.+
T Consensus       687 l~~~~~~~l~i~tid~---iqk-l~irtvpl~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT  759 (1096)
T KOG1897|consen  687 LASANGGALTIGTIDE---IQK-LHIRTVPLG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT  759 (1096)
T ss_pred             EEEecCCceEEEEecc---hhh-cceeeecCC---CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence            5556666666666653   111 112222221   256677776644444443221              1356666655


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCC-CCEEEEEeC----------CCcEEEEECCCcceEEEE-ecCCCCce
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSD-GQWLAAVNC----------FGDVYIFNLEIQRQHWFI-SRLEGASV  566 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~las~~~----------dg~i~iwd~~~~~~~~~~-~~~~~~~v  566 (744)
                      .+.+...+-...       ...-.|.++.|..| +.++++|..          .|.|.||.+...+.+..+ ...-.+.|
T Consensus       760 f~vl~~hef~~~-------E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav  832 (1096)
T KOG1897|consen  760 FEVLSSHEFERN-------ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAV  832 (1096)
T ss_pred             eeEEeecccccc-------ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccce
Confidence            554433221100       01233555568888 778888753          588999998873333222 11122566


Q ss_pred             eEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581          567 TAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       567 ~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                      .++.--  +|++||.  -...|++|+..+++
T Consensus       833 ~aL~~f--ngkllA~--In~~vrLye~t~~~  859 (1096)
T KOG1897|consen  833 YALVEF--NGKLLAG--INQSVRLYEWTTER  859 (1096)
T ss_pred             eehhhh--CCeEEEe--cCcEEEEEEccccc
Confidence            666543  4666554  45689999998883

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.15  E-value=0.0065  Score=64.53  Aligned_cols=115  Identities=18%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             CCeEEEEecCCeEEEEEecCCCceeEeecccCcc--CcE-------EEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE
Q 004581           97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVS--GRV-------LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR  167 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~V-------~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~  167 (744)
                      +..+.+++.++.|+-.|..+++.+-... .....  ..+       ..+++.  +..++.++.|+.|...|.++|+.+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEee
Confidence            4578888888888888988887663211 11110  011       112232  34677788899999999999999988


Q ss_pred             EEecCCCCCCCCceeEEEEEEecCCeEEEEcC------CCCEEEEeCCCcceEEEee
Q 004581          168 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHS  218 (744)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~  218 (744)
                      ......    .....+.+.-..-++.++.+..      +|.|..+|.++|+.+..+.
T Consensus       146 ~~~~~~----~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       146 KKNGDY----KAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccc----cccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            763100    0001111111112556665543      6889999999999886654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.11  E-value=2.5e-05  Score=78.46  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=62.6

Q ss_pred             CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEE
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW  206 (744)
Q Consensus       128 ~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vw  206 (744)
                      .....|.|++++|+.+.|+.|+.||.|++||...+...  ..        ...-....++|+|+| .+++|+..|.+++|
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~--------ka~~~P~~iaWHp~gai~~V~s~qGelQ~F  326 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LA--------KAEFIPTLIAWHPDGAIFVVGSEQGELQCF  326 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--ee--------eecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence            57788999999999999999999999999998766433  22        245667889999999 88999999999999


Q ss_pred             eCCCc
Q 004581          207 DSRHG  211 (744)
Q Consensus       207 d~~~~  211 (744)
                      |+.-.
T Consensus       327 D~ALs  331 (545)
T PF11768_consen  327 DMALS  331 (545)
T ss_pred             EeecC
Confidence            98743

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.10  E-value=0.00064  Score=63.30  Aligned_cols=207  Identities=10%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581          419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~  498 (744)
                      ..+..+++.|+...|++-.+..-.|+.+.. + + ++  +.+..+.+ ....-.|++..++.++++--.++.+.++++..
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~-G-~v--lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-D-G-KV--LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T----E--EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-C-C-CE--EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            569999999998776665555556677775 2 2 22  33344444 34577888887787777666689999999843


Q ss_pred             Cc-e-----eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC---cceEEEE-------ecCC
Q 004581          499 SE-L-----LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEI---QRQHWFI-------SRLE  562 (744)
Q Consensus       499 ~~-~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~---~~~~~~~-------~~~~  562 (744)
                      .. .     ...+.-.      ....+...+-.++|+|.++.|..+-...-..||.+..   .......       ....
T Consensus        96 ~~~~~~~~~~~~~~l~------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   96 DTTSLDRADVQKISLG------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             --TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             cccccchhhceEEecc------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            21 1     1112110      0012566789999999988888887776677777754   1111110       1112


Q ss_pred             CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc---CCCceEEEEeCCCCCCcEEEEEcC
Q 004581          563 GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE---FPGEVIGLSFSPSPSSSSVIIYSA  639 (744)
Q Consensus       563 ~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~---~~~~v~~i~fspdg~~~~~~~~~~  639 (744)
                      ...+.+++++|.++++++.+..+..|.++|.++.-+..+      .+...+.+   .-...-+|+|+++|  +..++.-.
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~------~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEp  241 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL------SLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEP  241 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE------E-STTGGG-SS---SEEEEEE-TT----EEEEETT
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE------EeCCcccCcccccCCccEEEECCCC--CEEEEcCC
Confidence            246789999997788888888889999999555432211      11111111   11457899999986  44444445


Q ss_pred             ceEEEE
Q 004581          640 RAMCVI  645 (744)
Q Consensus       640 ~~~~~~  645 (744)
                      +-+++|
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.06  E-value=0.001  Score=67.27  Aligned_cols=104  Identities=14%  Similarity=0.046  Sum_probs=63.5

Q ss_pred             ecCCCEEEEEe---------CCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581          139 SADGNMLYSGS---------SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR  209 (744)
Q Consensus       139 s~dg~~l~t~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~  209 (744)
                      |||+++++...         ..+.+.++|+++++......         ....+....|+|+|..++-..++.|.+++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---------~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---------PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----------EETTBSEEEE-SSSTEEEEEETTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---------CccccccceeecCCCeeEEEecCceEEEECC
Confidence            68888877742         24678999999876543332         2455677899999944444457889999988


Q ss_pred             CcceEEEee-c-------c---------ccceeEEEEcCCCCEEEeecC-CCeEEEEEcc
Q 004581          210 HGTLLQAHS-F-------H---------KGDVNALAAAPSHNRVFSTGS-DGQVILYKAS  251 (744)
Q Consensus       210 ~~~~~~~~~-~-------h---------~~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~  251 (744)
                      +++..+.-. +       -         -+.-..+.||||+++|+.... +..|..+.+.
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~  131 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP  131 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence            774443211 1       0         112356889999998887644 4455555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.04  E-value=0.00019  Score=73.09  Aligned_cols=155  Identities=21%  Similarity=0.247  Sum_probs=98.9

Q ss_pred             CCeEEEEEcCCCCEEEEE---cC--CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC-CC--c
Q 004581          419 RKIICSTISNSGMLFAYS---DH--VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DR--R  490 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~---~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg--~  490 (744)
                      ..+..-+|+|+++.+++.   ..  ..+.++++..+. ...+     ....+   .-...+|+|||++|+.... ||  .
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i-----~~~~g---~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI-----LNFNG---NNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee-----eccCC---ccCCccCCCCCCEEEEEECCCCCcc
Confidence            556677899999877662   22  346677776522 2222     11222   3345679999999887644 55  5


Q ss_pred             EEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC-C--cEEEEECCCcceEEEEecCCCCcee
Q 004581          491 IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF-G--DVYIFNLEIQRQHWFISRLEGASVT  567 (744)
Q Consensus       491 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~  567 (744)
                      |+++|+..++. ..+..           ..+.-+.-.|||||++++..+.. |  .|.+++.++............  -.
T Consensus       264 iy~~dl~~~~~-~~Lt~-----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~--~~  329 (425)
T COG0823         264 IYLMDLDGKNL-PRLTN-----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG--NS  329 (425)
T ss_pred             EEEEcCCCCcc-eeccc-----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC--Cc
Confidence            77778776653 33443           23334477899999999877643 3  577888888776444433222  22


Q ss_pred             EEeecCCCCCeEEEEecC-Ce--EEEEEcCCCc
Q 004581          568 AAGFPPQNNNVLIITTSS-NQ--VYVFDVEAKQ  597 (744)
Q Consensus       568 ~l~~sp~~~~~l~~~~~d-~~--v~vwd~~~~~  597 (744)
                      .-.|+| ||++++..+.. |.  |.+.|+.++.
T Consensus       330 ~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         330 NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CccCCC-CCCEEEEEeccCCceeeEEeccCCCC
Confidence            678999 99999988854 43  6666666553

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=0.00017  Score=68.45  Aligned_cols=79  Identities=18%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             ecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCC
Q 004581          124 RSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADST  200 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d  200 (744)
                      ..+.+|...|..++|||..+ +|..++.+..|+|.|+++...+..+.         ....+|+++|.-|.  .|.+|...
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---------a~~~~wSC~wDlde~h~IYaGl~n  257 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---------AYNQIWSCCWDLDERHVIYAGLQN  257 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------ccCCceeeeeccCCcceeEEeccC
Confidence            56678888999999999887 78888999999999999998888886         33889999999887  79999999


Q ss_pred             CCEEEEeCCCc
Q 004581          201 GSVQFWDSRHG  211 (744)
Q Consensus       201 g~i~vwd~~~~  211 (744)
                      |.|.|||++..
T Consensus       258 G~VlvyD~R~~  268 (463)
T KOG1645|consen  258 GMVLVYDMRQP  268 (463)
T ss_pred             ceEEEEEccCC
Confidence            99999999853

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.00  E-value=0.0074  Score=61.01  Aligned_cols=214  Identities=14%  Similarity=0.126  Sum_probs=108.1

Q ss_pred             ccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEe-----cCC----eEEE
Q 004581          126 LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL-----RCG----TLVS  196 (744)
Q Consensus       126 ~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~----~l~s  196 (744)
                      +....++|++++.| |=-++|.|..+|.+.|.|++....++.-..............+.++.|.     .|+    .+++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            34456889999997 5569999999999999999877777774432211222345677788886     233    6889


Q ss_pred             EcCCCCEEEEeCC--C-cceE----EEeeccccceeEEE-EcCCC--------------------CEEEeecCCCeEEEE
Q 004581          197 ADSTGSVQFWDSR--H-GTLL----QAHSFHKGDVNALA-AAPSH--------------------NRVFSTGSDGQVILY  248 (744)
Q Consensus       197 ~~~dg~i~vwd~~--~-~~~~----~~~~~h~~~v~~l~-~~~~~--------------------~~l~~~~~dg~i~iw  248 (744)
                      |...|.+.+|.+-  . +...    .....+.++|..+. |+.+.                    +-++....+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            9999999999764  1 2222    12224556666655 32220                    123333456778888


Q ss_pred             EcccCcCCCCCCCCcccccceEEEEeeeeeccCcce--eeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCc
Q 004581          249 KASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR--ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP  326 (744)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  326 (744)
                      ...+.+.                 ...  .....+.  .+.+.+.       ..                     ...+.
T Consensus       241 ~~~~~k~-----------------~~K--~~~~~~~~~~~~vv~~-------~~---------------------~~~~~  273 (395)
T PF08596_consen  241 KPPKSKG-----------------AHK--SFDDPFLCSSASVVPT-------IS---------------------RNGGY  273 (395)
T ss_dssp             -TT---E-----------------EEE--E-SS-EEEEEEEEEEE-------E----------------------EEEEE
T ss_pred             eCCCCcc-----------------cce--eeccccccceEEEEee-------cc---------------------cCCce
Confidence            8776541                 111  1111111  1222100       00                     00223


Q ss_pred             EEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeC-CeEEEEEee
Q 004581          327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYS-CRLDILSVR  390 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~i~i~~~~  390 (744)
                      .|++-..+|.+++|.+...+.+....   .+.......+....++++|.++...+ .++.++.+-
T Consensus       274 ~Lv~l~~~G~i~i~SLP~Lkei~~~~---l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~  335 (395)
T PF08596_consen  274 CLVCLFNNGSIRIYSLPSLKEIKSVS---LPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW  335 (395)
T ss_dssp             EEEEEETTSEEEEEETTT--EEEEEE----SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred             EEEEEECCCcEEEEECCCchHhhccc---CCCccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence            78888899999999998766544333   22223345667788889988776543 355554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.98  E-value=0.0011  Score=67.85  Aligned_cols=131  Identities=21%  Similarity=0.288  Sum_probs=72.3

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      +.+++ +.||.-.|+.......        ...+.-...+|.+.+ .+|+-...++|.|+.--+.+....+..       
T Consensus        45 r~v~V-~g~geY~iyt~~~~r~--------k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-------  107 (443)
T PF04053_consen   45 RFVLV-CGDGEYEIYTALAWRN--------KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL-------  107 (443)
T ss_dssp             SEEEE-EETTEEEEEETTTTEE--------EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT------------
T ss_pred             CEEEE-EcCCEEEEEEccCCcc--------cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC-------
Confidence            35555 7778888888431111        123455678899854 466666688999974323333334442       


Q ss_pred             CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581          178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                        ...+..+..   |.++....++.|.+||+++++.+..+...  +|..+.|+++|++++..+.+ .+.+++....
T Consensus       108 --~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  108 --PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             --CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence              112333332   74444444558999999999999999853  48999999999999988755 5777776554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.97  E-value=0.00074  Score=69.09  Aligned_cols=183  Identities=9%  Similarity=0.117  Sum_probs=97.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581          419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~  498 (744)
                      ..+..+.++|+|++++++.++...+|....    ..   -      ........++|.+.++ +|+-..+++|.|+.--+
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~----~r---~------k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALA----WR---N------KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTT----TE---E------EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccC----Cc---c------cccCceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence            457789999999999999999988887321    11   0      1122567788988554 66666688899974323


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCe
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV  578 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  578 (744)
                      .+....+..            ...+..+-.   |.+|+..+.+ .|.+||+++++.+..+..   .+|..+.|++ ++++
T Consensus        99 ~~~~k~i~~------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~-~g~~  158 (443)
T PF04053_consen   99 NEVVKSIKL------------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSD-DGEL  158 (443)
T ss_dssp             E-TT-----------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-T-TSSE
T ss_pred             cccceEEcC------------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEEC-CCCE
Confidence            333334443            223555543   8888777655 799999999998888753   2589999999 9999


Q ss_pred             EEEEecCCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCce
Q 004581          579 LIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA  641 (744)
Q Consensus       579 l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~  641 (744)
                      ++..+.+ .++|++.+......-...-.......+......|.+..|.-|     +++|++..
T Consensus       159 val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-----~fiYtT~~  215 (443)
T PF04053_consen  159 VALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-----CFIYTTSN  215 (443)
T ss_dssp             EEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-----EEEEE-TT
T ss_pred             EEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-----EEEEEcCC
Confidence            9999866 577776654411000000000011222222468888888754     44554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.92  E-value=0.019  Score=58.23  Aligned_cols=151  Identities=15%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             CCCCeEEEEEcCCCC-EEEE--E-cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEe-eCCCEEE-EEeCCCc
Q 004581          417 ASRKIICSTISNSGM-LFAY--S-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS-YDSSQLI-IAGHDRR  490 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~-~la~--~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s-pd~~~l~-~~~~dg~  490 (744)
                      ....+..+.|+++++ +++.  . ....+.++..+...+.... .. .....+-........|. +++..++ ....+|.
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~-~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV-VL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-EE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-EE-EecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            356788999999998 4443  2 3333444444331122221 11 12222222344466665 6665554 4445664


Q ss_pred             --EEEEEccCCceeeeeccCcccccccCCCCCCceEE-EEECCCCCEEE-EEeCC----CcEEEEECC-CcceEEEEecC
Q 004581          491 --IYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQWLA-AVNCF----GDVYIFNLE-IQRQHWFISRL  561 (744)
Q Consensus       491 --i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~la-s~~~d----g~i~iwd~~-~~~~~~~~~~~  561 (744)
                        |++++...+. .+.+..           ..-.|+. +.++++++.|. ++..+    ..|+.-+++ ++... .+.. 
T Consensus       260 ~hly~~~~~~~~-~~~lT~-----------G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~-~LT~-  325 (353)
T PF00930_consen  260 RHLYLYDLDGGK-PRQLTS-----------GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK-CLTC-  325 (353)
T ss_dssp             EEEEEEETTSSE-EEESS------------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE-ESST-
T ss_pred             cEEEEEcccccc-eecccc-----------CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE-eccC-
Confidence              5555655554 344543           4566754 77888887665 44432    245555666 44443 3322 


Q ss_pred             CCCceeEEeecCCCCCeEEEEec
Q 004581          562 EGASVTAAGFPPQNNNVLIITTS  584 (744)
Q Consensus       562 ~~~~v~~l~~sp~~~~~l~~~~~  584 (744)
                      ....-..+.||| ++++++....
T Consensus       326 ~~~~~~~~~~Sp-dg~y~v~~~s  347 (353)
T PF00930_consen  326 EDGDHYSASFSP-DGKYYVDTYS  347 (353)
T ss_dssp             TSSTTEEEEE-T-TSSEEEEEEE
T ss_pred             CCCCceEEEECC-CCCEEEEEEc
Confidence            211225899999 9998877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.91  E-value=0.00046  Score=72.70  Aligned_cols=192  Identities=16%  Similarity=0.154  Sum_probs=134.0

Q ss_pred             cCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCC
Q 004581           96 EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        96 ~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (744)
                      +...+..|+-...+..+|+.+.+..   +...-..+.|.-++.  ++++|.+|...|+|.+-|..+.+.++++.      
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------  214 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKET---RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------  214 (1118)
T ss_pred             CCcceeecchhhheeeeecccceee---eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence            4567788888888889999755543   333323334666665  67899999999999999999999999998      


Q ss_pred             CCCCceeEEEEEEecCCeEEEEcC---------CCCEEEEeCCCcceEEEeeccccceeEEEEcCC-CCEEEeecCCCeE
Q 004581          176 GSGPELCIWSLLSLRCGTLVSADS---------TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPS-HNRVFSTGSDGQV  245 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~~~~~dg~i  245 (744)
                        .|.+.|..+.... ++|++++.         |.-|+|||++..+.+.-+..+.++ .-+.|.|. ...+++++..|..
T Consensus       215 --aHs~siSDfDv~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~  290 (1118)
T KOG1275|consen  215 --AHSGSISDFDVQG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF  290 (1118)
T ss_pred             --ccccceeeeeccC-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence              6999998876643 36666653         456899999988877777766555 55677775 3568888889999


Q ss_pred             EEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCC
Q 004581          246 ILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV  325 (744)
Q Consensus       246 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  325 (744)
                      .+-|..+-.....             .+.........+.++.++         +++                        
T Consensus       291 q~vd~~~lsNP~~-------------~~~~v~p~~s~i~~fDiS---------sn~------------------------  324 (1118)
T KOG1275|consen  291 QFVDTATLSNPPA-------------GVKMVNPNGSGISAFDIS---------SNG------------------------  324 (1118)
T ss_pred             eeccccccCCCcc-------------ceeEEccCCCcceeEEec---------CCC------------------------
Confidence            9888333211000             022223334446777775         444                        


Q ss_pred             cEEEEecCCCeEEEEecCccCCC
Q 004581          326 PMLISAGDDTKLFAYCANEFTKF  348 (744)
Q Consensus       326 ~~l~s~~~d~~i~~~~~~~~~~~  348 (744)
                      +.++.|..+|.|.+|.-....++
T Consensus       325 ~alafgd~~g~v~~wa~~~~P~F  347 (1118)
T KOG1275|consen  325 DALAFGDHEGHVNLWADRPQPQF  347 (1118)
T ss_pred             ceEEEecccCcEeeecCCCCCcc
Confidence            49999999999999985544333

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.86  E-value=0.011  Score=59.68  Aligned_cols=102  Identities=14%  Similarity=0.151  Sum_probs=55.5

Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE-----CCCCCEEEEEeCCCcEEEEECCCcceE
Q 004581          481 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT-----SSDGQWLAAVNCFGDVYIFNLEIQRQH  555 (744)
Q Consensus       481 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-----spdg~~las~~~dg~i~iwd~~~~~~~  555 (744)
                      ++++ ..+..++++...+.+..+....           ..-....+++     ...+..|++-..+|.|++|.+...+.+
T Consensus       228 ~vVv-vSe~~irv~~~~~~k~~~K~~~-----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  228 YVVV-VSESDIRVFKPPKSKGAHKSFD-----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             EEEE-E-SSEEEEE-TT---EEEEE-S-----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             EEEE-EcccceEEEeCCCCcccceeec-----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            4444 4466799999987765544432           2223334444     246778889999999999999998887


Q ss_pred             EEEecCCC---CceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          556 WFISRLEG---ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       556 ~~~~~~~~---~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      ..+.-...   ..+....|++ +|+.++..+. ..+.++.+-..
T Consensus       296 ~~~~l~~~~d~~~~~~ssis~-~Gdi~~~~gp-sE~~l~sv~~~  337 (395)
T PF08596_consen  296 KSVSLPPPLDSRRLSSSSISR-NGDIFYWTGP-SEIQLFSVWGE  337 (395)
T ss_dssp             EEEE-SS---HHHHTT-EE-T-TS-EEEE-SS-SEEEEEEEES-
T ss_pred             hcccCCCccccccccccEECC-CCCEEEEeCc-ccEEEEEEEcc
Confidence            66644221   2345567788 8887766654 35555655433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.82  E-value=0.013  Score=54.77  Aligned_cols=209  Identities=13%  Similarity=0.130  Sum_probs=116.5

Q ss_pred             ccccceeecCC-eEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEE-cCCc
Q 004581          363 HLVHNTIFSHT-SLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVK  440 (744)
Q Consensus       363 ~~v~~~~~s~~-~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~  440 (744)
                      ..+.++++.|+ +.+.+..+..-.|+.+... +             +.+.++..........+++..++.++++. .++.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-------------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~   87 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-------------KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR   87 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT----------------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-------------CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc
Confidence            44789999996 5566677776667777643 2             26788887777889999999999888776 5788


Q ss_pred             eEEEEeecCCCCCceEEeeeccC--C-cccccccEEEEeeCCCEEEEEeCCCcEEEEEccC---CceeeeeccCcccccc
Q 004581          441 PSLFELKKGKVGQGEWIINKRQL--P-RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS---SELLHTFTPCREEHDR  514 (744)
Q Consensus       441 v~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~~~  514 (744)
                      +.++++.........-+.....+  . .....+-.++|+|.++.|+++-+..-..||.+..   ...+........   .
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~---~  164 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL---D  164 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH---H
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc---c
Confidence            88888854222222222222221  1 2334688999999999888887776677777653   111111100000   0


Q ss_pred             cCCCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCcceEEEE--ecC-CC-----CceeEEeecCCCCCeEEEEecC
Q 004581          515 EIQPSEPPITKMFTSSD-GQWLAAVNCFGDVYIFNLEIQRQHWFI--SRL-EG-----ASVTAAGFPPQNNNVLIITTSS  585 (744)
Q Consensus       515 ~~~~~~~~i~~l~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~--~~~-~~-----~~v~~l~~sp~~~~~l~~~~~d  585 (744)
                      ........+.+++++|. |++++..+.+..|.++|.+ ++....+  ... |+     ...-.|+|.+ +|+ |.++++-
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~-LYIvsEp  241 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGN-LYIVSEP  241 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETT
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECC-CCC-EEEEcCC
Confidence            01114556889999995 4566777778889999944 4443333  221 11     3578899999 875 5555667


Q ss_pred             CeEEEE
Q 004581          586 NQVYVF  591 (744)
Q Consensus       586 ~~v~vw  591 (744)
                      +.+++|
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            777666

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.79  E-value=0.0026  Score=49.69  Aligned_cols=100  Identities=28%  Similarity=0.237  Sum_probs=74.1

Q ss_pred             EEEEEEec---CC-CEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581          133 VLSVTWSA---DG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS  208 (744)
Q Consensus       133 V~~~~~s~---dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~  208 (744)
                      |+++++..   || +.|++|+.|..||+|+  ..+.+..+.         ....|.++.-...++++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~---------e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT---------ETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe---------cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            66777654   33 5899999999999997  457777776         667888898888889999999999999976


Q ss_pred             CCcceEEEeeccccceeEEEEcC-C--C-CEEEeecCCCeEE
Q 004581          209 RHGTLLQAHSFHKGDVNALAAAP-S--H-NRVFSTGSDGQVI  246 (744)
Q Consensus       209 ~~~~~~~~~~~h~~~v~~l~~~~-~--~-~~l~~~~~dg~i~  246 (744)
                      .  ..+...+. ...+.++++.. +  | ..|++|-.+|.|-
T Consensus        71 ~--~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 S--QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c--ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4  44455554 33466666543 2  2 3688888888774

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.78  E-value=0.023  Score=58.42  Aligned_cols=105  Identities=15%  Similarity=0.314  Sum_probs=69.8

Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcc
Q 004581          474 IFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQR  553 (744)
Q Consensus       474 ~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~  553 (744)
                      .++.+....+....++.+.+.+-...+.   +.            ..+++..|++||+|++||.-..+|.+.|.+.+-.+
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~------------~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID------------SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---cc------------CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence            3555566556556666666555332211   22            25689999999999999999999999999887666


Q ss_pred             eEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          554 QHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       554 ~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      ....+.......+..|.|+- +. -++..- ...|.+......
T Consensus       250 ~~~e~~~~~~~~p~~~~WCG-~d-av~l~~-~~~l~lvg~~~~  289 (410)
T PF04841_consen  250 KLCEFDTDSKSPPKQMAWCG-ND-AVVLSW-EDELLLVGPDGD  289 (410)
T ss_pred             eeEEeecCcCCCCcEEEEEC-CC-cEEEEe-CCEEEEECCCCC
Confidence            66666554346788999986 43 333333 556777764444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.78  E-value=0.081  Score=56.39  Aligned_cols=62  Identities=21%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             CCeEEEEcCCCCEEEEeCCCcceEEEeeccc-cceeE----------EEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          191 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNA----------LAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       191 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~----------l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      +++++.++.++.|.-.|.++|+.+.++.... ..+..          +++  .+..++.++.|+.+..+|..+++
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk  141 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK  141 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence            6688888889999999999999987765321 11111          122  23568888899999999998887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.78  E-value=0.014  Score=58.42  Aligned_cols=169  Identities=14%  Similarity=0.173  Sum_probs=99.7

Q ss_pred             eEEEEEecCCCCeEEEEEcC---C----CCEEEEEcC-----------CceEEEEeecC-CCCCceEEeeeccCCccccc
Q 004581          409 LLVQVKSKASRKIICSTISN---S----GMLFAYSDH-----------VKPSLFELKKG-KVGQGEWIINKRQLPRKLQF  469 (744)
Q Consensus       409 ~~~~~~~~~~~~i~~~~~s~---~----g~~la~~~~-----------~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  469 (744)
                      .+..+.......+.+++.-.   +    ..++++|+.           |.+.+|++... ....++-.+.....   ..+
T Consensus        14 ~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~---~g~   90 (321)
T PF03178_consen   14 VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV---KGP   90 (321)
T ss_dssp             EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE---SS-
T ss_pred             EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee---cCc
Confidence            45566666666666554432   2    466776422           77999999762 11123222223333   336


Q ss_pred             ccEEEEeeCCCEEEEEeCCCcEEEEEccCCc-eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Q 004581          470 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE-LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       470 v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd  548 (744)
                      |++++-- ++ +|+++. ++.|.+|++...+ +...-...          ....++++..  .++++++|+....|.++.
T Consensus        91 V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~----------~~~~i~sl~~--~~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   91 VTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD----------SPFYITSLSV--FKNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-----------BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred             ceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec----------ceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence            7777654 44 455444 4789999998776 43332210          1235555554  466999999888888886


Q ss_pred             CCC--cceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          549 LEI--QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       549 ~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      .+.  .+....-.......++++.|-+ +++.+++++.+|.+.++.....
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCC
Confidence            553  2232222222345789999997 5579999999999999998743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.73  E-value=0.029  Score=55.06  Aligned_cols=158  Identities=15%  Similarity=0.183  Sum_probs=79.9

Q ss_pred             CCCeEEEEEcCCC-CEEEEEcCC---c--eEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC----
Q 004581          418 SRKIICSTISNSG-MLFAYSDHV---K--PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH----  487 (744)
Q Consensus       418 ~~~i~~~~~s~~g-~~la~~~~~---~--v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~----  487 (744)
                      ...+..+.+||.. .+|+.+-+|   .  -|+|-++. + +...|.+....   ....+..=-|+|||..|..-+.    
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-d-g~~~~~v~~~~---~~e~~gHEfw~~DG~~i~y~~~~~~~  261 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-D-GSNVKKVHRRM---EGESVGHEFWVPDGSTIWYDSYTPGG  261 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-T-S---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-C-CCcceeeecCC---CCcccccccccCCCCEEEEEeecCCC
Confidence            3778888899965 556665332   3  37898886 2 22333333221   1235556678999998865432    


Q ss_pred             -CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC----------------cEEEEECC
Q 004581          488 -DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG----------------DVYIFNLE  550 (744)
Q Consensus       488 -dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg----------------~i~iwd~~  550 (744)
                       +..|.-+|+.+++......             ...-..+..++||+++|-=+.|.                .|++++++
T Consensus       262 ~~~~i~~~d~~t~~~~~~~~-------------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~  328 (386)
T PF14583_consen  262 QDFWIAGYDPDTGERRRLME-------------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE  328 (386)
T ss_dssp             --EEEEEE-TTT--EEEEEE-------------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred             CceEEEeeCCCCCCceEEEe-------------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence             3357777888776543222             22455777889999876543332                56778888


Q ss_pred             CcceEEEEe--------cCCC-CceeEEeecCCCCCeEEEEe-cCCeEEEEEcC
Q 004581          551 IQRQHWFIS--------RLEG-ASVTAAGFPPQNNNVLIITT-SSNQVYVFDVE  594 (744)
Q Consensus       551 ~~~~~~~~~--------~~~~-~~v~~l~~sp~~~~~l~~~~-~d~~v~vwd~~  594 (744)
                      .++......        ..+. ..--...|+| |+++++..+ ..|...||-++
T Consensus       329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred             cCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence            766542211        1010 1124578999 888766554 56766666543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.73  E-value=0.0033  Score=49.15  Aligned_cols=101  Identities=21%  Similarity=0.282  Sum_probs=73.1

Q ss_pred             ccEEEEee---CC-CEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEE
Q 004581          470 AHSMIFSY---DS-SQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVY  545 (744)
Q Consensus       470 v~~i~~sp---d~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~  545 (744)
                      |+++++..   || +.|++|+.|..|++|+-  .+.+..+..            ...|++++-... ..++.+..+|+|-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e------------~~~v~~L~~~~~-~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE------------TDKVTSLCSLGG-GRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec------------ccceEEEEEcCC-CEEEEEecCCEEE
Confidence            45565543   32 57999999999999984  467777774            677888887776 5689999999999


Q ss_pred             EEECCCcceEEEEecCCCCceeEEeecCCCC---CeEEEEecCCeEE
Q 004581          546 IFNLEIQRQHWFISRLEGASVTAAGFPPQNN---NVLIITTSSNQVY  589 (744)
Q Consensus       546 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~---~~l~~~~~d~~v~  589 (744)
                      +|+-  ....|.++..+  .++++++..-++   .-|++|-.+|.|-
T Consensus        67 vY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9975  34456666544  577777764121   2588888888764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.72  E-value=0.029  Score=57.71  Aligned_cols=147  Identities=10%  Similarity=0.083  Sum_probs=71.5

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEe-----ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-eEEEEEecC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYH-----RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY-EIYRITVGL  172 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~  172 (744)
                      .|++-..||.+++||+. |+. .+.     ....-.+..|.+..+..+|-.+.+  .++.+.+.+-.... ..+.+...+
T Consensus        93 ~LvvV~~dG~v~vy~~~-G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p  168 (410)
T PF04841_consen   93 ELVVVQSDGTVRVYDLF-GEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIP  168 (410)
T ss_pred             eEEEEEcCCEEEEEeCC-Cce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCC
Confidence            77888899999999996 333 211     111112233444455556644444  34444444322221 111111101


Q ss_pred             CCCCCCCce-eEEE-EEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          173 GGLGSGPEL-CIWS-LLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       173 ~~~~~~~~~-~v~~-~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                      ......+.. ..+. ..++.+. ..+....++.+.+-+-...+.   +. ..+++..+++||++++++.-..+|.+.+.+
T Consensus       169 ~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~s  244 (410)
T PF04841_consen  169 GLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVS  244 (410)
T ss_pred             CcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence            100000111 1111 1233333 333333344444333221111   22 246899999999999999998999988876


Q ss_pred             cccC
Q 004581          250 ASCE  253 (744)
Q Consensus       250 ~~~~  253 (744)
                      .+-.
T Consensus       245 sDf~  248 (410)
T PF04841_consen  245 SDFS  248 (410)
T ss_pred             Cccc
Confidence            5443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.72  E-value=0.065  Score=53.59  Aligned_cols=144  Identities=16%  Similarity=0.199  Sum_probs=93.4

Q ss_pred             CeEEEEec----------CCeEEEEEecCC----CceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 004581           98 RRVALACD----------DGCVRIYRITDS----DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        98 ~~la~~~~----------dg~i~iwd~~~~----~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                      .++++|+.          .|.|.++++...    ..+...... ...++|++++-- +|. |+.+. .+.|.+|++...+
T Consensus        43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            36776653          299999999853    244333222 347889999876 444 55444 4699999998887


Q ss_pred             -eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC-cceEEEee--ccccceeEEEEcCCCCEEEee
Q 004581          164 -EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHS--FHKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       164 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~~~  239 (744)
                       .......       .....+.++....+ +++.|+....+.++..+. ...+..+.  .....++++.|.++++.++++
T Consensus       119 ~l~~~~~~-------~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  119 TLLKKAFY-------DSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             SEEEEEEE--------BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred             cchhhhee-------cceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence             4444432       23446777766644 899999988888875442 23232222  235568899998666799999


Q ss_pred             cCCCeEEEEEcccC
Q 004581          240 GSDGQVILYKASCE  253 (744)
Q Consensus       240 ~~dg~i~iw~~~~~  253 (744)
                      ..+|.+.++.....
T Consensus       191 D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  191 DKDGNLFVLRYNPE  204 (321)
T ss_dssp             ETTSEEEEEEE-SS
T ss_pred             cCCCeEEEEEECCC
Confidence            99999999998753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.71  E-value=0.012  Score=61.41  Aligned_cols=103  Identities=12%  Similarity=0.003  Sum_probs=75.0

Q ss_pred             EecCCCEEEEEeCCCeEEEEEccC----C-ceEEEEEecCCCCCCCCceeEEEEEEecCC-e-EEEEcCCCCEEEEeCCC
Q 004581          138 WSADGNMLYSGSSDGYIRSWDAKL----G-YEIYRITVGLGGLGSGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRH  210 (744)
Q Consensus       138 ~s~dg~~l~t~~~dg~i~vwd~~~----~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~dg~i~vwd~~~  210 (744)
                      +.++|++...+  ++.|.+.|..+    + +.+..+.         -....+.+.++||| + ++++..++++.|.|+.+
T Consensus       284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP---------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP---------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE---------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            34578876653  56899999988    3 4555555         44556789999999 4 55666699999999987


Q ss_pred             cce------------EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581          211 GTL------------LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       211 ~~~------------~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      .+.            ......- ..-...+|.++|+...+...|..|..|++..
T Consensus       353 ~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            442            3334332 2335678999998777788899999999987

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.70  E-value=0.0011  Score=67.72  Aligned_cols=177  Identities=19%  Similarity=0.137  Sum_probs=106.8

Q ss_pred             CCCCCCeeEEe---cCC-CeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCc
Q 004581            1 MGLPGGRLFSS---SID-GSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHE   76 (744)
Q Consensus         1 ~~~~~~~l~~~---~~d-~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (744)
                      |++.+..++-.   ... ..+.++|+++++....+. ..+.-..-+|+|||+.                           
T Consensus       200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~---------------------------  251 (425)
T COG0823         200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK---------------------------  251 (425)
T ss_pred             cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE---------------------------
Confidence            45666665443   223 579999999987776655 3445557789999964                           


Q ss_pred             CccCCCCCCcccccccccccCCeEEEEecCCeE--EEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeC-CC-
Q 004581           77 TSESENDSDSDELHEQSVVEDRRVALACDDGCV--RIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-DG-  152 (744)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i--~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-dg-  152 (744)
                                            ++.+...||..  .+.|+.++. +   ..+..-.+.-..-.|+|||+.++..+. .| 
T Consensus       252 ----------------------l~f~~~rdg~~~iy~~dl~~~~-~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~  305 (425)
T COG0823         252 ----------------------LAFSSSRDGSPDIYLMDLDGKN-L---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGR  305 (425)
T ss_pred             ----------------------EEEEECCCCCccEEEEcCCCCc-c---eecccCCccccCccCCCCCCEEEEEeCCCCC
Confidence                                  34455666655  455555333 3   334444444457889999999987765 33 


Q ss_pred             -eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcC-CCC--EEEEeCCCcceEEEeeccccceeEE
Q 004581          153 -YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADS-TGS--VQFWDSRHGTLLQAHSFHKGDVNAL  227 (744)
Q Consensus       153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~--i~vwd~~~~~~~~~~~~h~~~v~~l  227 (744)
                       .|.+.|.+.+.. .+++..        ...-..-.++||| +|+..+. +|.  |.+.|+.++..++.+. +......-
T Consensus       306 p~I~~~~~~g~~~-~riT~~--------~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~p  375 (425)
T COG0823         306 PQIYLYDLEGSQV-TRLTFS--------GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESP  375 (425)
T ss_pred             cceEEECCCCCce-eEeecc--------CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCC
Confidence             477777765544 555431        1111167789999 5544443 454  6677776655444443 23344456


Q ss_pred             EEcCCCCEEEeecC
Q 004581          228 AAAPSHNRVFSTGS  241 (744)
Q Consensus       228 ~~~~~~~~l~~~~~  241 (744)
                      .+.+++..++..+.
T Consensus       376 s~~~ng~~i~~~s~  389 (425)
T COG0823         376 SWAPNGRMIMFSSG  389 (425)
T ss_pred             CcCCCCceEEEecc
Confidence            77788877665443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.68  E-value=0.052  Score=52.94  Aligned_cols=154  Identities=14%  Similarity=0.192  Sum_probs=86.3

Q ss_pred             CCCEEEEEcCCceEEEEeecCCCCC-ceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581          429 SGMLFAYSDHVKPSLFELKKGKVGQ-GEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       429 ~g~~la~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  507 (744)
                      .+..|+++....+.+|......... +.  .+...++   ..+..++|.  ++.|+.|..++ ..+.|+.++.....+..
T Consensus       104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~--~ke~~lp---~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~  175 (275)
T PF00780_consen  104 GSRRLCVAVKKKILIYEWNDPRNSFSKL--LKEISLP---DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDP  175 (275)
T ss_pred             cceEEEEEECCEEEEEEEECCcccccce--eEEEEcC---CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCc
Confidence            3456777777799999988632222 11  2333333   378888887  67788777555 88999987766544432


Q ss_pred             Cccccc-ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC
Q 004581          508 CREEHD-REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN  586 (744)
Q Consensus       508 ~~~~~~-~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~  586 (744)
                      ...... ........++..+..+ ++.+|++-  +..-.+.|..+.......-... ..+.++++..   .+|+..+. +
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~-~~p~~~~~~~---pyli~~~~-~  247 (275)
T PF00780_consen  176 SDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWS-SAPQSVAYSS---PYLIAFSS-N  247 (275)
T ss_pred             cCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcC-CchhEEEEEC---CEEEEECC-C
Confidence            110000 0000112344445544 45666653  3334444554433221111222 3677788854   56666655 5


Q ss_pred             eEEEEEcCCCcc
Q 004581          587 QVYVFDVEAKQL  598 (744)
Q Consensus       587 ~v~vwd~~~~~~  598 (744)
                      .|.||++.++++
T Consensus       248 ~iEV~~~~~~~l  259 (275)
T PF00780_consen  248 SIEVRSLETGEL  259 (275)
T ss_pred             EEEEEECcCCcE
Confidence            599999999975

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.67  E-value=0.023  Score=52.76  Aligned_cols=210  Identities=12%  Similarity=0.150  Sum_probs=123.6

Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEE-EcCC--ceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEe
Q 004581          410 LVQVKSKASRKIICSTISNSGMLFAY-SDHV--KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG  486 (744)
Q Consensus       410 ~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~--~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~  486 (744)
                      +.+.......-...+.|..+|.++-+ |..|  .++.+++.+   +. +  .....++... ---.++.. +++.....-
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~-~--~~~~~l~~~~-FgEGit~~-~d~l~qLTW  107 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GK-V--LQSVPLPPRY-FGEGITIL-GDKLYQLTW  107 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SS-E--EEEEE-TTT---EEEEEEE-TTEEEEEES
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCC---Cc-E--EEEEECCccc-cceeEEEE-CCEEEEEEe
Confidence            44444444455667778777776655 5444  566666654   22 1  2223333321 12233332 334444455


Q ss_pred             CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC---
Q 004581          487 HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG---  563 (744)
Q Consensus       487 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~---  563 (744)
                      .++...+||..+.+.+.++.-            .+.=..++  .||+.|+..+....|+++|.++.+....+.....   
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p  173 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPY------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP  173 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE-------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred             cCCeEEEEccccceEEEEEec------------CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence            689999999999999999874            55566777  5788899988888999999988876665543222   


Q ss_pred             -CceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcc----cccccCCCceEEEEeCCCCCCcEEEEEc
Q 004581          564 -ASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLP----RRYQEFPGEVIGLSFSPSPSSSSVIIYS  638 (744)
Q Consensus       564 -~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~----~~~~~~~~~v~~i~fspdg~~~~~~~~~  638 (744)
                       ..++-|.|-  +|...|=.=....|...|.++|+...|-.-......    ..-.....-..+|+++|.  .+++++.|
T Consensus       174 v~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~--~~~l~vTG  249 (264)
T PF05096_consen  174 VSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE--TDRLFVTG  249 (264)
T ss_dssp             ---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT--TTEEEEEE
T ss_pred             CCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC--CCEEEEEe
Confidence             356778887  577777777778899999999987776543221100    001112466899999996  57899999


Q ss_pred             CceEEEE
Q 004581          639 ARAMCVI  645 (744)
Q Consensus       639 ~~~~~~~  645 (744)
                      -.|-.++
T Consensus       250 K~Wp~ly  256 (264)
T PF05096_consen  250 KLWPKLY  256 (264)
T ss_dssp             TT-SEEE
T ss_pred             CCCCceE
Confidence            9884433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.66  E-value=0.046  Score=53.15  Aligned_cols=147  Identities=14%  Similarity=0.107  Sum_probs=91.6

Q ss_pred             cccEEEEeeCCCEEEEEeC-----------CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEE
Q 004581          469 FAHSMIFSYDSSQLIIAGH-----------DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA  537 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las  537 (744)
                      ..+.+...|+|.+.+....           -|.|+.+|. .+..++.+..           +-..-+.|+||||++.|..
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-----------~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-----------DLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-----------cEEecCceEECCCCCEEEE
Confidence            5677888899888776543           133444443 4556555554           4555678999999998888


Q ss_pred             EeCC-CcEEEEECCC--c----ceEEEEecCCCCceeEEeecCCCCCeEEEEecCC-eEEEEEcCCCccccccccccCCc
Q 004581          538 VNCF-GDVYIFNLEI--Q----RQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLGEWSMQHTFVL  609 (744)
Q Consensus       538 ~~~d-g~i~iwd~~~--~----~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~-~v~vwd~~~~~~~~ws~~~~~~~  609 (744)
                      ++.. +.|+-|+++.  +    +..........+.+-.++... +|.+.+++...| .|.+|+.+ |++           
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l-----------  246 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKL-----------  246 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcE-----------
Confidence            8754 7888888762  1    111122222334566677777 777766555554 89999998 543           


Q ss_pred             ccccccCCCceEEEEeCCCCCCcEEEEEcCce
Q 004581          610 PRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA  641 (744)
Q Consensus       610 ~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~  641 (744)
                      ...+.-....+++++|--. ..+.+++.++..
T Consensus       247 ~~~i~lP~~~~t~~~FgG~-~~~~L~iTs~~~  277 (307)
T COG3386         247 LGEIKLPVKRPTNPAFGGP-DLNTLYITSARS  277 (307)
T ss_pred             EEEEECCCCCCccceEeCC-CcCEEEEEecCC
Confidence            2223322367788888543 246677766665

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.00026  Score=71.50  Aligned_cols=93  Identities=10%  Similarity=0.047  Sum_probs=80.1

Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceE-EEEECCCCCEEEEEeCCCcEEEE
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNCFGDVYIF  547 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~las~~~dg~i~iw  547 (744)
                      .+..+.|+|.-..+|++..+|.|.+..+. .+.+.++.-           +...++ +++|.|||+.||.|-.||+|++.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-----------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-----------PGENVTASLCWRPDGKLLAVGFKDGTIRLH   89 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-----------CCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence            67788999999999999999999999987 888888886           466666 99999999999999999999999


Q ss_pred             ECCCcceEEEEecCCCCceeEEeecC
Q 004581          548 NLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       548 d~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      |++++..+...+......|.++-|++
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            99999877664433446889999975

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.00032  Score=70.90  Aligned_cols=95  Identities=17%  Similarity=0.220  Sum_probs=77.5

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCcee-EEeecCCCCCeEEEEecCCeEEEEEcCCCcc
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT-AAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                      ...|..+.|+|.-..+|++..+|.|.++.++ .+.+++++. ++..++ +++|.| ||+.||+|-.||+|++-|++++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence            4558889999999999999999999999999 777888875 344566 999999 999999999999999999999863


Q ss_pred             ccccccccCCcccccccCCCceEEEEeCC
Q 004581          599 GEWSMQHTFVLPRRYQEFPGEVIGLSFSP  627 (744)
Q Consensus       599 ~~ws~~~~~~~~~~~~~~~~~v~~i~fsp  627 (744)
                                +.........+|..+.|+|
T Consensus        97 ----------l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 ----------LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ----------eeccccccccchheeeccc
Confidence                      1222233446788888875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.62  E-value=1.3e-05  Score=80.34  Aligned_cols=143  Identities=20%  Similarity=0.282  Sum_probs=98.1

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEec-CCCEEEEEe----CCCeEEEEEccCCce--E--EEE
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSA-DGNMLYSGS----SDGYIRSWDAKLGYE--I--YRI  168 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~l~t~~----~dg~i~vwd~~~~~~--~--~~~  168 (744)
                      ..+++|..+|.|.+-.+.....- ......+|....++++|++ |.+.||.|-    .|..+.|||+.++-.  .  ..+
T Consensus        71 cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            48899999999999988632211 1145567889999999998 456777663    367899999988722  1  111


Q ss_pred             EecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC-CCCEEEeecCCCeEE
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP-SHNRVFSTGSDGQVI  246 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~~~~~dg~i~  246 (744)
                      ..       +......+++|..+. ++++|.....+.++|++. .+...-...+..+..+.+.| .++++++-. ||.|.
T Consensus       150 s~-------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iA  220 (783)
T KOG1008|consen  150 SS-------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIA  220 (783)
T ss_pred             cc-------ccccCccccccccCcchhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCceeccc-cCcee
Confidence            11       123344478888777 778888888999999982 22222223345667788888 677777654 99999


Q ss_pred             EEEc
Q 004581          247 LYKA  250 (744)
Q Consensus       247 iw~~  250 (744)
                      +||.
T Consensus       221 iwD~  224 (783)
T KOG1008|consen  221 IWDT  224 (783)
T ss_pred             eccc
Confidence            9994

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.61  E-value=0.18  Score=55.75  Aligned_cols=121  Identities=14%  Similarity=0.018  Sum_probs=72.0

Q ss_pred             CCeEEEEecCCeEEEEEecCCCceeEeecccCc-c-----CcEEEEEEec----------------CCCEEEEEeCCCeE
Q 004581           97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRV-S-----GRVLSVTWSA----------------DGNMLYSGSSDGYI  154 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~-----~~V~~~~~s~----------------dg~~l~t~~~dg~i  154 (744)
                      +..|..++.++.|.=.|..+++.+-... .... .     .....+++..                .+..++.++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d-~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFD-PKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            5678888888988888888877653211 1110 0     0112233321                34578888899999


Q ss_pred             EEEEccCCceEEEEEecCCCC-CC---CCce---eEEEEEEecCCeEEEEcC----------CCCEEEEeCCCcceEEEe
Q 004581          155 RSWDAKLGYEIYRITVGLGGL-GS---GPEL---CIWSLLSLRCGTLVSADS----------TGSVQFWDSRHGTLLQAH  217 (744)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~-~~---~~~~---~v~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~  217 (744)
                      .-.|.++|+....+...-.-. ..   ....   .+++--..-++.++.|+.          +|.|+-+|.++|+.+..+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999999998764210000 00   0000   011111111456666643          688999999999998776


Q ss_pred             e
Q 004581          218 S  218 (744)
Q Consensus       218 ~  218 (744)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.013  Score=59.67  Aligned_cols=195  Identities=13%  Similarity=0.131  Sum_probs=127.5

Q ss_pred             CCeEEEEEcCCCCEEEE--EcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC---CCcEEE
Q 004581          419 RKIICSTISNSGMLFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIYV  493 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~---dg~i~v  493 (744)
                      .....+++++.+..+.+  ..++.+.+.+...   . ..  ...... +  .....++++|+++.+.++..   ++.+.+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~-~~--~~~~~v-G--~~P~~~~~~~~~~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---N-TV--LGSIPV-G--LGPVGLAVDPDGKYVYVANAGNGNNTVSV  144 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcc---c-ce--eeEeee-c--cCCceEEECCCCCEEEEEecccCCceEEE
Confidence            33457788888875554  3578888888543   1 11  111111 1  15678999999998887765   689999


Q ss_pred             EEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCCcEEEEECCCcceEE-E----EecCCCCcee
Q 004581          494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHW-F----ISRLEGASVT  567 (744)
Q Consensus       494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg~i~iwd~~~~~~~~-~----~~~~~~~~v~  567 (744)
                      .|..+++.+.+...           -..+ ..++++|+|+.+..+. .++.|.+.|.++..... .    ..  ....+.
T Consensus       145 id~~t~~~~~~~~v-----------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~--~~~~P~  210 (381)
T COG3391         145 IDAATNKVTATIPV-----------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG--VGTGPA  210 (381)
T ss_pred             EeCCCCeEEEEEec-----------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc--cCCCCc
Confidence            99998888887543           2233 8999999999776665 78899999987766542 1    11  124667


Q ss_pred             EEeecCCCCCeEEEEecC---CeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEE
Q 004581          568 AAGFPPQNNNVLIITTSS---NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCV  644 (744)
Q Consensus       568 ~l~~sp~~~~~l~~~~~d---~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~  644 (744)
                      .+.++| ++.++.+....   +.+...|..++....+-        . ..+.. ...++.++|+|+--.+.......+..
T Consensus       211 ~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~--------~-~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         211 GIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTATD--------L-PVGSG-APRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             eEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEEec--------c-ccccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence            899999 88877776554   58999999988754310        0 11111 45678999986411111122355666


Q ss_pred             EeC
Q 004581          645 IDF  647 (744)
Q Consensus       645 ~~~  647 (744)
                      +|.
T Consensus       280 id~  282 (381)
T COG3391         280 IDG  282 (381)
T ss_pred             EeC
Confidence            775

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.023  Score=52.60  Aligned_cols=212  Identities=12%  Similarity=0.132  Sum_probs=131.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581          418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~  497 (744)
                      ...+.++.|+|+.+.|.+..+.--.+..+.. + + .+  +.+..+.+ ....-.+.+..+|+++++--.++.+.++.+.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~-G-dl--irtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK-E-G-DL--IRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEec-C-C-ce--EEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            3568999999999998887776666777765 1 2 22  33344444 3356678888888888887779999999886


Q ss_pred             CCceeeeeccCcccccccCCCC-CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE--EecCCC-------Ccee
Q 004581          498 SSELLHTFTPCREEHDREIQPS-EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF--ISRLEG-------ASVT  567 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~--~~~~~~-------~~v~  567 (744)
                      ....+..+....-.  -+...+ +...-.++|+|..+.|..+-.-.-+.||.++.......  ....+.       ..|.
T Consensus       159 ~~t~~~~~~~~~i~--L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         159 ADTTVISAKVQKIP--LGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             CCccEEeccceEEe--ccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            55322222210000  000112 56677899999999999988887788887764331111  111111       3577


Q ss_pred             EEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCC---CceEEEEeCCCCCCcEEEEEcCceEEE
Q 004581          568 AAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFP---GEVIGLSFSPSPSSSSVIIYSARAMCV  644 (744)
Q Consensus       568 ~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~---~~v~~i~fspdg~~~~~~~~~~~~~~~  644 (744)
                      ++.|++..+.+|+.+.+++.+...|....-....      .+.+...+..   -..-+|+..++|+  ..++.-.+-+++
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l------sL~~g~~gL~~dipqaEGiamDd~g~--lYIvSEPnlfy~  308 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL------SLTKGNHGLSSDIPQAEGIAMDDDGN--LYIVSEPNLFYR  308 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEecCCCeeeeE------EeccCCCCCcccCCCcceeEECCCCC--EEEEecCCccee
Confidence            8899987788888888899999999877632111      1222222222   3457889988854  333333444444


Q ss_pred             E
Q 004581          645 I  645 (744)
Q Consensus       645 ~  645 (744)
                      +
T Consensus       309 F  309 (316)
T COG3204         309 F  309 (316)
T ss_pred             c
Confidence            3

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.024  Score=57.90  Aligned_cols=215  Identities=13%  Similarity=0.140  Sum_probs=137.4

Q ss_pred             cccEEEEeeCCCEEEEEe-CCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC---CCcE
Q 004581          469 FAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC---FGDV  544 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~---dg~i  544 (744)
                      ....+++++++..+.... .++.|.+.|..+.+.+.....            ......++++|+++.+..+..   ++.+
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v------------G~~P~~~~~~~~~~~vYV~n~~~~~~~v  142 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV------------GLGPVGLAVDPDGKYVYVANAGNGNNTV  142 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee------------ccCCceEEECCCCCEEEEEecccCCceE
Confidence            456788889888665554 468899999877777766654            336778999999998887776   6889


Q ss_pred             EEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEe-cCCeEEEEEcCCCccccccccccCCcccccccCCCceEEE
Q 004581          545 YIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGL  623 (744)
Q Consensus       545 ~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~-~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i  623 (744)
                      .+.|-.+.+.....+...  ....++++| +++.++++. .++.|.+.|..+..+.. .      .+............+
T Consensus       143 svid~~t~~~~~~~~vG~--~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~------~~~~~~~~~~~P~~i  212 (381)
T COG3391         143 SVIDAATNKVTATIPVGN--TPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-G------SVGSLVGVGTGPAGI  212 (381)
T ss_pred             EEEeCCCCeEEEEEecCC--CcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-c------ccccccccCCCCceE
Confidence            999999998877765533  348999999 998776665 67899999977775421 0      001111222455789


Q ss_pred             EeCCCCCCcEEEEEcC--ceEEEEeCCCCCCCCccCcccCCCchhhhhhccCCccccccccccccccccccccCCcceEE
Q 004581          624 SFSPSPSSSSVIIYSA--RAMCVIDFGRPVDPDDETDMVSGQGSALRKIASTPINGRLKRKLRDCQTESNKLHGRKNFEF  701 (744)
Q Consensus       624 ~fspdg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  701 (744)
                      .++|||+--.+.....  ..+..+|.....                 ........++              . .+.. ..
T Consensus       213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-----------------v~~~~~~~~~--------------~-~~~~-v~  259 (381)
T COG3391         213 AVDPDGNRVYVANDGSGSNNVLKIDTATGN-----------------VTATDLPVGS--------------G-APRG-VA  259 (381)
T ss_pred             EECCCCCEEEEEeccCCCceEEEEeCCCce-----------------EEEecccccc--------------C-CCCc-ee
Confidence            9999964222222222  256666653200                 0000000000              0 0112 23


Q ss_pred             EecccceEEeeecCCCeEEEEecChHHHHhcCCCCcc
Q 004581          702 FAFRDPVLFIGHLSKSSMLIIDKPWLEVVKTFDAPVH  738 (744)
Q Consensus       702 ~~~~~~~l~~~~~~~~~l~vve~p~~~~~~~lp~~~~  738 (744)
                      ..+.+...+++....+.+.+++..-..+....|..-+
T Consensus       260 ~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~  296 (381)
T COG3391         260 VDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE  296 (381)
T ss_pred             ECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence            6667778888877778888888877777666665544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.057  Score=49.68  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=62.9

Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCC--eEEEEcCCCC-EEEEeCCCcceEEEeeccccc--eeEEEEcCCCCE
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADSTGS-VQFWDSRHGTLLQAHSFHKGD--VNALAAAPSHNR  235 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~-i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~  235 (744)
                      .|+++.....+         ..-..++|+|..  .++.+-.-|+ ..++|....+...++....+.  --.=.|+|||.+
T Consensus        57 aGk~v~~~~lp---------aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~  127 (366)
T COG3490          57 AGKIVFATALP---------ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRL  127 (366)
T ss_pred             CCceeeeeecc---------cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcE
Confidence            45666655532         233346777765  4555555555 567888877766655432211  122479999999


Q ss_pred             EEeecC-----CCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581          236 VFSTGS-----DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA  289 (744)
Q Consensus       236 l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  289 (744)
                      |+..-.     -|.|-+||.+.+-                ..+..+..|.-.-..+.+.
T Consensus       128 LYATEndfd~~rGViGvYd~r~~f----------------qrvgE~~t~GiGpHev~lm  170 (366)
T COG3490         128 LYATENDFDPNRGVIGVYDAREGF----------------QRVGEFSTHGIGPHEVTLM  170 (366)
T ss_pred             EEeecCCCCCCCceEEEEeccccc----------------ceecccccCCcCcceeEEe
Confidence            987533     3789999988543                2455666665555556555

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.34  E-value=0.19  Score=49.62  Aligned_cols=89  Identities=11%  Similarity=-0.084  Sum_probs=44.9

Q ss_pred             EEEEEecCCCEEEEEeC---CCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCC
Q 004581          134 LSVTWSADGNMLYSGSS---DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSR  209 (744)
Q Consensus       134 ~~~~~s~dg~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~  209 (744)
                      +.=+|.+||+.|+.++.   ...+.+.|+++++..+....        ..........++++ .++-......|+-.|++
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg--------~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG--------PGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S--------S-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC--------CCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence            34578899987777665   45688889988876655442        11111124445666 55444455678888999


Q ss_pred             CcceEEEeeccccceeEEEEc
Q 004581          210 HGTLLQAHSFHKGDVNALAAA  230 (744)
Q Consensus       210 ~~~~~~~~~~h~~~v~~l~~~  230 (744)
                      +.+....+.....-+-...|.
T Consensus       111 T~e~~~vy~~p~~~~g~gt~v  131 (386)
T PF14583_consen  111 TLEERVVYEVPDDWKGYGTWV  131 (386)
T ss_dssp             T--EEEEEE--TTEEEEEEEE
T ss_pred             cCcEEEEEECCccccccccee
Confidence            877666666555555445553

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.32  E-value=0.17  Score=51.26  Aligned_cols=93  Identities=26%  Similarity=0.402  Sum_probs=62.4

Q ss_pred             EEEEecCCCEEEEEeCCCeEEE---EEcc-CC----ceEEEEEecCCCCCCCCceeEEEEEEec-----------CC-eE
Q 004581          135 SVTWSADGNMLYSGSSDGYIRS---WDAK-LG----YEIYRITVGLGGLGSGPELCIWSLLSLR-----------CG-TL  194 (744)
Q Consensus       135 ~~~~s~dg~~l~t~~~dg~i~v---wd~~-~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------~~-~l  194 (744)
                      +++.+|+++.||.+..+..+.+   |+.. .+    ............   .....|+++.+.|           |. .+
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~---~~~e~ITsi~clpl~s~~~s~~~~dw~~I   82 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDD---EPGECITSILCLPLSSQKRSTGGPDWTCI   82 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccC---CCCCEEEEEEEEEeecccccCCCCCcEEE
Confidence            4678999999999987766655   6431 12    222222221111   1125777776654           23 68


Q ss_pred             EEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcC
Q 004581          195 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP  231 (744)
Q Consensus       195 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~  231 (744)
                      +.|..+|.|++|.. +|.++..-..|..+|..+.+..
T Consensus        83 ~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   83 AVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             EEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            99999999999986 4888877778899999998854

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.32  E-value=0.012  Score=62.97  Aligned_cols=130  Identities=24%  Similarity=0.192  Sum_probs=74.7

Q ss_pred             cCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEE---EEccCCceEEEEEecCCCCCCCCce
Q 004581          105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS---WDAKLGYEIYRITVGLGGLGSGPEL  181 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~  181 (744)
                      ..+.+.+.++..++.    ..  ...+.|..+.|||||..+|... ++.|.+   -....|.  ..+... .........
T Consensus       428 ~~gql~~~~vd~ge~----~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~-~~l~~~l~~  497 (591)
T PRK13616        428 ATGQLARTPVDASAV----AS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNP-REVGPGLGD  497 (591)
T ss_pred             CCceEEEEeccCchh----hh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeeccc-EEeecccCC
Confidence            345666666653332    11  3456799999999999998766 467777   4444454  222110 000112334


Q ss_pred             eEEEEEEecCCeEEEEcCCCCEEEEeCCC-cceEEEeec--cccceeEEEEcCCCCEEEeecCCCeEE
Q 004581          182 CIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       182 ~v~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                      .+.++.|.+++.|+.+..++.-.+|.+.- |.....+..  ....+..++-+++  .++....+|.+.
T Consensus       498 ~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        498 TAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            46788999999666666655555554432 332222232  2567777887763  566666777443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.31  E-value=0.011  Score=64.10  Aligned_cols=139  Identities=9%  Similarity=0.069  Sum_probs=95.3

Q ss_pred             ecCCeEEEEEecCCCceeEeecccCccCc-EEEEEEec-----CCCEEEEEeCCCeEEEEEccCCc--eEEEEEecCCCC
Q 004581          104 CDDGCVRIYRITDSDELIYHRSLPRVSGR-VLSVTWSA-----DGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGL  175 (744)
Q Consensus       104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~~~~s~-----dg~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~~  175 (744)
                      .....|+-.|++.|+.+   ..+..|... |..++=..     +....+.|-.+..+..||.+-..  .+..-     ..
T Consensus       501 ~~~~~ly~mDLe~GKVV---~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-----~k  572 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVV---EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-----SK  572 (794)
T ss_pred             CCCCceEEEecCCCcEE---EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-----cc
Confidence            45678888899877776   566666543 55543221     12345667778899999987532  22111     11


Q ss_pred             CCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581          176 GSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       176 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                      .........|++-+.+|+||.|+.+|.||+||--..+....+.+-..+|..|..+.||++|++.+ +..+.+++..
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            11345667888889999999999999999999543333344567788999999999999988765 4567777754

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.28  E-value=0.32  Score=50.79  Aligned_cols=165  Identities=16%  Similarity=0.179  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCEEEE-E-c--C-CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeC---CCcEE
Q 004581          421 IICSTISNSGMLFAY-S-D--H-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH---DRRIY  492 (744)
Q Consensus       421 i~~~~~s~~g~~la~-~-~--~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~---dg~i~  492 (744)
                      ...+..++|+++|++ . .  + ..+.+.++.........|..    +......+....-+..+.+++....   .+.|.
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~----l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~  304 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL----LSPREDGVEYYVDHHGDRLYILTNDDAPNGRLV  304 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE----EEESSSS-EEEEEEETTEEEEEE-TT-TT-EEE
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE----EeCCCCceEEEEEccCCEEEEeeCCCCCCcEEE
Confidence            667889999999876 2 2  2 23444444431001111111    1111112323222334444444432   45777


Q ss_pred             EEEccCCce---eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe-CCC--cEEEEECCCcceEEEEecCCCCce
Q 004581          493 VVDVSSSEL---LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-CFG--DVYIFNLEIQRQHWFISRLEGASV  566 (744)
Q Consensus       493 v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v  566 (744)
                      ..++.+...   ...+..           +...+.-..++..+++|+... .++  .|+++++..+.....++....+.|
T Consensus       305 ~~~l~~~~~~~~~~~l~~-----------~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v  373 (414)
T PF02897_consen  305 AVDLADPSPAEWWTVLIP-----------EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSV  373 (414)
T ss_dssp             EEETTSTSGGGEEEEEE-------------SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEE
T ss_pred             EecccccccccceeEEcC-----------CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEE
Confidence            777765542   223333           455333334444555666554 333  688999994444445544444567


Q ss_pred             eEEeecCCCCCeE-EEEecC---CeEEEEEcCCCccccc
Q 004581          567 TAAGFPPQNNNVL-IITTSS---NQVYVFDVEAKQLGEW  601 (744)
Q Consensus       567 ~~l~~sp~~~~~l-~~~~~d---~~v~vwd~~~~~~~~w  601 (744)
                      ..+...+ +.+.+ +..++-   .+++.||+.+++++.|
T Consensus       374 ~~~~~~~-~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  374 SGVSGDF-DSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEES-T-T-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             eccCCCC-CCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence            7777667 44444 333332   4899999999987553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.27  E-value=0.00058  Score=42.68  Aligned_cols=35  Identities=46%  Similarity=0.745  Sum_probs=32.0

Q ss_pred             ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEE
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD  158 (744)
Q Consensus       124 ~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd  158 (744)
                      ..+..|...|.+++|++++.++++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            56668889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.27  E-value=8.6e-05  Score=74.80  Aligned_cols=187  Identities=16%  Similarity=0.191  Sum_probs=116.6

Q ss_pred             eeEEecCCCeEEEEEccCCce--eEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            7 RLFSSSIDGSVSEWDLYDLKQ--KIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         7 ~l~~~~~d~~i~iwd~~~~~~--~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      .+++|..+|.|.+-.+....-  .....+|....+++||++-..                                    
T Consensus        72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt------------------------------------  115 (783)
T KOG1008|consen   72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT------------------------------------  115 (783)
T ss_pred             hhhhccccCceEEeecCCcccccceecccccccccccccccccH------------------------------------
Confidence            367788888888887754322  224456778888999988642                                    


Q ss_pred             CcccccccccccCCeEEEEe----cCCeEEEEEecCC--CceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 004581           85 DSDELHEQSVVEDRRVALAC----DDGCVRIYRITDS--DELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSW  157 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~----~dg~i~iwd~~~~--~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vw  157 (744)
                                   +.||+|-    .|..+.|||+.+.  .+... ..|. +-.....+++|..+.++|.+|.....+.++
T Consensus       116 -------------n~LAagldkhrnds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~if  181 (783)
T KOG1008|consen  116 -------------NHLAAGLDKHRNDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIF  181 (783)
T ss_pred             -------------HHHHhhhhhhcccCCccceecccccCCCccc-cccccccccCccccccccCcchhhcccccchhhhh
Confidence                         3566663    4678999999855  11111 1111 233455689999999999999999999999


Q ss_pred             EccCC-ceEEEEEecCCCCCCCCceeEEEEEEec-CCeEEEEcCCCCEEEEeC-CC-cceEEEeecccc----ceeEEEE
Q 004581          158 DAKLG-YEIYRITVGLGGLGSGPELCIWSLLSLR-CGTLVSADSTGSVQFWDS-RH-GTLLQAHSFHKG----DVNALAA  229 (744)
Q Consensus       158 d~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~vwd~-~~-~~~~~~~~~h~~----~v~~l~~  229 (744)
                      |++.. .....+          ....+..+...| ..-.++...||.|.+||. .. ..+++.+.....    .+..++|
T Consensus       182 dlRqs~~~~~sv----------nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay  251 (783)
T KOG1008|consen  182 DLRQSLDSVSSV----------NTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY  251 (783)
T ss_pred             hhhhhhhhhhhh----------hhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence            98632 111111          223444555666 333444455999999993 22 233333332222    4899999


Q ss_pred             cCCCC-EEEeecC-CCeEEEEEcccC
Q 004581          230 APSHN-RVFSTGS-DGQVILYKASCE  253 (744)
Q Consensus       230 ~~~~~-~l~~~~~-dg~i~iw~~~~~  253 (744)
                      +|..+ .+++... .++|+++++...
T Consensus       252 cPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  252 CPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             ccCCcchhhhhccCcceEEEeccccc
Confidence            99532 3444444 678999988653

>smart00320 WD40 WD40 repeats

Probab=97.23  E-value=0.00098  Score=41.57  Aligned_cols=39  Identities=31%  Similarity=0.508  Sum_probs=34.8

Q ss_pred             cceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          211 GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       211 ~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                      ++++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677888999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.16  E-value=0.024  Score=60.71  Aligned_cols=118  Identities=15%  Similarity=0.103  Sum_probs=66.5

Q ss_pred             cEEEEEEecCCCEEEEEeCC-CeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEE---E
Q 004581          132 RVLSVTWSADGNMLYSGSSD-GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQF---W  206 (744)
Q Consensus       132 ~V~~~~~s~dg~~l~t~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~v---w  206 (744)
                      ..+.-.|+|||+.|++.... ..+++.+-.....+..+....+.........|..+.|+||| +++... ++.|.+   -
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv  476 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVE  476 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence            37889999999988887643 23444443222334333322111111234569999999999 554433 467766   3


Q ss_pred             eCCCcce-E---EEeec-cccceeEEEEcCCCCEEEeecCCCeEEEEEcc
Q 004581          207 DSRHGTL-L---QAHSF-HKGDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       207 d~~~~~~-~---~~~~~-h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                      ....|.. +   ..+.. -...+..+.|..++.+ +++..++...+|.+.
T Consensus       477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             eCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence            4344431 1   11222 2234688999998874 455555545555544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.11  E-value=0.19  Score=47.92  Aligned_cols=193  Identities=15%  Similarity=0.048  Sum_probs=111.3

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE-
Q 004581          419 RKIICSTISNSGMLFAYSD--HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD-  495 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~--~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d-  495 (744)
                      ..+.+.++|++|+.+|+-.  ++.-.+|-... +......      +  ....+..-.|++++...+....+...+++. 
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~-~~~~~~~------~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA-GGPVRPV------L--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcC-CCcceee------c--cCCccccccccCCCCEEEEEcCCCceEEEEe
Confidence            4688999999999888744  66666666654 2222211      1  112567778999988888777666666664 


Q ss_pred             ccCCceee-eeccCcccccccCCCCCCceEEEEECCCCCEEEEEe---CCCcEEEEECC---CcceE-----EEEecCCC
Q 004581          496 VSSSELLH-TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN---CFGDVYIFNLE---IQRQH-----WFISRLEG  563 (744)
Q Consensus       496 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~---~dg~i~iwd~~---~~~~~-----~~~~~~~~  563 (744)
                      ..+++... .+...         .-...|+++.+||||..+|...   .++.|+|=-+.   .+...     ..+.....
T Consensus        95 ~~~g~~~~~~v~~~---------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen   95 SASGTGEPVEVDWP---------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL  165 (253)
T ss_pred             cCCCcceeEEeccc---------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence            33343221 12210         0122899999999999998776   35677776553   22011     11111123


Q ss_pred             CceeEEeecCCCCCeEEEEecCC-eEEE-EEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCce
Q 004581          564 ASVTAAGFPPQNNNVLIITTSSN-QVYV-FDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARA  641 (744)
Q Consensus       564 ~~v~~l~~sp~~~~~l~~~~~d~-~v~v-wd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~  641 (744)
                      ..++.++|.+ ++.+++.+...+ .+.. ..+..+..+.            +......+.-++...+  +..+++.+...
T Consensus       166 ~~v~~v~W~~-~~~L~V~~~~~~~~~~~~v~~dG~~~~~------------l~~~~~~~~v~a~~~~--~~~~~~t~~~~  230 (253)
T PF10647_consen  166 SDVTDVAWSD-DSTLVVLGRSAGGPVVRLVSVDGGPSTP------------LPSVNLGVPVVAVAAS--PSTVYVTDDGG  230 (253)
T ss_pred             CcceeeeecC-CCEEEEEeCCCCCceeEEEEccCCcccc------------cCCCCCCcceEEeeCC--CcEEEEECCCc
Confidence            5889999999 777666665544 3333 5555554221            2122222333333332  33477777777


Q ss_pred             EEE
Q 004581          642 MCV  644 (744)
Q Consensus       642 ~~~  644 (744)
                      ++.
T Consensus       231 ~~~  233 (253)
T PF10647_consen  231 VLQ  233 (253)
T ss_pred             EEE
Confidence            775

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.04  E-value=0.36  Score=47.04  Aligned_cols=149  Identities=17%  Similarity=0.101  Sum_probs=89.4

Q ss_pred             CCCCeeEEecCCCeEEEEEcc-CCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLY-DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESE   81 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (744)
                      ..+++|+.|+.+| |.++++. ..+.....+  ...|..+...|+-+                                 
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---------------------------------   48 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---------------------------------   48 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---------------------------------
Confidence            3478899999998 8999983 333333333  34499999999873                                 


Q ss_pred             CCCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeec-----------ccCccCcEEEEE---EecCCCEEEE
Q 004581           82 NDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRS-----------LPRVSGRVLSVT---WSADGNMLYS  147 (744)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~h~~~V~~~~---~s~dg~~l~t  147 (744)
                                       .|++-+ |+.+.++++..-........           -......+...+   -...+..|+.
T Consensus        49 -----------------~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v  110 (275)
T PF00780_consen   49 -----------------LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV  110 (275)
T ss_pred             -----------------EEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE
Confidence                             444443 49999999873332210000           111223444444   2223345555


Q ss_pred             EeCCCeEEEEEccCC-----ceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEe
Q 004581          148 GSSDGYIRSWDAKLG-----YEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH  217 (744)
Q Consensus       148 ~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  217 (744)
                      +. ...|.+|.+...     +....+.         ....+.+++|.++ .++.|. .....+.|+.++.....+
T Consensus       111 a~-kk~i~i~~~~~~~~~f~~~~ke~~---------lp~~~~~i~~~~~-~i~v~~-~~~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  111 AV-KKKILIYEWNDPRNSFSKLLKEIS---------LPDPPSSIAFLGN-KICVGT-SKGFYLIDLNTGSPSELL  173 (275)
T ss_pred             EE-CCEEEEEEEECCcccccceeEEEE---------cCCCcEEEEEeCC-EEEEEe-CCceEEEecCCCCceEEe
Confidence            54 458999888653     3445554         4577888888843 555555 444888898876654433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.018  Score=62.58  Aligned_cols=105  Identities=26%  Similarity=0.354  Sum_probs=74.4

Q ss_pred             CCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCC
Q 004581           97 DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG  176 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (744)
                      +..+|+|++.|.|-..|+...  +.....-..-.++|++++|+.||+.++.|-.+|.|.+||+.+++.++.+....    
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~----  172 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG----  172 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC----
Confidence            457899999999999998643  21112223346799999999999999999999999999999999998887421    


Q ss_pred             CCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581          177 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR  209 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~  209 (744)
                      ..+.+.+....++.+..+++++..|.  +|.+.
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            12333333333333337888877776  56543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.13  Score=47.89  Aligned_cols=173  Identities=14%  Similarity=0.210  Sum_probs=107.8

Q ss_pred             ccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC
Q 004581          461 RQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC  540 (744)
Q Consensus       461 ~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~  540 (744)
                      ....+....+.++.|+|+.+.|++......-.|+=..+|++++++.-.          .-...-.+.+..+|++.++--.
T Consensus        79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----------g~~DpE~Ieyig~n~fvi~dER  148 (316)
T COG3204          79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----------GFSDPETIEYIGGNQFVIVDER  148 (316)
T ss_pred             cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc----------ccCChhHeEEecCCEEEEEehh
Confidence            444555557999999999999998887776666555689999887642          2334556788889998888888


Q ss_pred             CCcEEEEECCCcceEEEEec--------CC-CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccc
Q 004581          541 FGDVYIFNLEIQRQHWFISR--------LE-GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPR  611 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~~~~~--------~~-~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~  611 (744)
                      ++.+.++.++.......+..        .+ +...-.++|.| ..+.|.++=+-+-+.||.++...- ..+..... .+.
T Consensus       149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~-~l~~~~~~-~~~  225 (316)
T COG3204         149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPS-SLSVHASL-DPT  225 (316)
T ss_pred             cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCc-cccccccc-Ccc
Confidence            99999998875532222111        11 34567899999 778888888877777777764420 00000000 011


Q ss_pred             ccc-cCCCceEEEEeCCCCCCcEEEEEcC-ceEEEEeC
Q 004581          612 RYQ-EFPGEVIGLSFSPSPSSSSVIIYSA-RAMCVIDF  647 (744)
Q Consensus       612 ~~~-~~~~~v~~i~fspdg~~~~~~~~~~-~~~~~~~~  647 (744)
                      ... -.-..+.++.|++. ++..+++... ..+..+|.
T Consensus       226 ~~~~~f~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAI-TNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             cccceEeeccccceecCC-CCcEEEEecCCceEEEEec
Confidence            000 01246888999986 4444444333 23444554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.79  E-value=0.24  Score=44.28  Aligned_cols=97  Identities=12%  Similarity=0.082  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCEEEE--EcCCceEEEEeecCCC----CCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEE
Q 004581          422 ICSTISNSGMLFAY--SDHVKPSLFELKKGKV----GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       422 ~~~~~s~~g~~la~--~~~~~v~l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d  495 (744)
                      ..++|+.+.+.+.+  +.+.+|..|+.+...+    ...++++++.+...+ ...-.+++..+|++.++.-..++|..+|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            46778888777666  5677777788543211    234555555322222 1344566677888888888899999999


Q ss_pred             ccCCceeeeeccCcccccccCCCCCCceEEEEECC
Q 004581          496 VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS  530 (744)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp  530 (744)
                      ..+|+.+.++.-           ....|+++||--
T Consensus       240 p~tGK~L~eikl-----------Pt~qitsccFgG  263 (310)
T KOG4499|consen  240 PTTGKILLEIKL-----------PTPQITSCCFGG  263 (310)
T ss_pred             CCCCcEEEEEEc-----------CCCceEEEEecC
Confidence            999999999987           588899999953

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.78  E-value=0.48  Score=47.31  Aligned_cols=110  Identities=19%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecC----CeEEEEcC-C------
Q 004581          132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRC----GTLVSADS-T------  200 (744)
Q Consensus       132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~l~s~~~-d------  200 (744)
                      .-++|+|.|||++|++ ...|.|++++ ..+.....+... .............++++|+    ++|..... .      
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~-~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADL-PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE--TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccc-ccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            3578999999987775 5599999999 555542222211 1223345678899999995    53333222 1      


Q ss_pred             --CCEEEEeCCCc-------c-eEEEeec---cccceeEEEEcCCCCEEEeecCCCe
Q 004581          201 --GSVQFWDSRHG-------T-LLQAHSF---HKGDVNALAAAPSHNRVFSTGSDGQ  244 (744)
Q Consensus       201 --g~i~vwd~~~~-------~-~~~~~~~---h~~~v~~l~~~~~~~~l~~~~~dg~  244 (744)
                        ..|.-|....+       + .+..+..   ....-..|+|.|||.+.++.+..+.
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence              12333433322       1 1112222   2234566999999976666655544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.011  Score=64.30  Aligned_cols=99  Identities=14%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             CeeEEecCCCeEEEEEccC-CceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            6 GRLFSSSIDGSVSEWDLYD-LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      ..++.|+..|.|...|+.. .++...=..-+++|++++|+.+|                                     
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-------------------------------------  142 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-------------------------------------  142 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-------------------------------------
Confidence            4578888899999888754 22222222346899999999999                                     


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCc---EEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGR---VLSVTWSADGNMLYSGSSDGYIRSWDA  159 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~---V~~~~~s~dg~~l~t~~~dg~i~vwd~  159 (744)
                                   .+++.|-.+|.|.+||...++.+   +.+.-|..+   |..+.+..++..++++...|.  +|.+
T Consensus       143 -------------~~l~~G~~~G~V~v~D~~~~k~l---~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  143 -------------SLLLAGLGDGHVTVWDMHRAKIL---KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             -------------ceeccccCCCcEEEEEccCCcce---eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence                         68999999999999999977777   444444333   444455556667888877776  6664

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.69  E-value=0.7  Score=45.11  Aligned_cols=155  Identities=13%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             EEEEEecCCCceeEeec-ccCc-cCcEEEEEEecCCCEEEEEeC---------CCeEEEEEcc-CCceEEEEEecCCCCC
Q 004581          109 VRIYRITDSDELIYHRS-LPRV-SGRVLSVTWSADGNMLYSGSS---------DGYIRSWDAK-LGYEIYRITVGLGGLG  176 (744)
Q Consensus       109 i~iwd~~~~~~~~~~~~-~~~h-~~~V~~~~~s~dg~~l~t~~~---------dg~i~vwd~~-~~~~~~~~~~~~~~~~  176 (744)
                      +.+++.+.+........ ..+. ..+-+.+...|+|.+-++...         ...-.+|-+. .+..+..+.       
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-------  159 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-------  159 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-------
Confidence            55666654444121122 2222 245677888999987776443         1112444444 455555554       


Q ss_pred             CCCceeEEEEEEecCC-eEEEEcC-CCCEEEEeCCC--c----c-eEEEeeccccceeEEEEcCCCCEEEeecCCC-eEE
Q 004581          177 SGPELCIWSLLSLRCG-TLVSADS-TGSVQFWDSRH--G----T-LLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVI  246 (744)
Q Consensus       177 ~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~vwd~~~--~----~-~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-~i~  246 (744)
                       .+-..-+.++|+||+ .|+.+.+ .+.|.-|++..  +    + ....+..+.+..-.++...+|.+-+++..+| .|.
T Consensus       160 -~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~  238 (307)
T COG3386         160 -DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV  238 (307)
T ss_pred             -CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence             456667889999999 5555554 57788887752  1    1 1122223456666788888887665554444 899


Q ss_pred             EEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeee
Q 004581          247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA  289 (744)
Q Consensus       247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  289 (744)
                      .|+.. +.                 .+.........+.+++|.
T Consensus       239 ~~~pd-G~-----------------l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         239 RFNPD-GK-----------------LLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             EECCC-Cc-----------------EEEEEECCCCCCccceEe
Confidence            99887 33                 245555555667777773

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.033  Score=55.76  Aligned_cols=147  Identities=10%  Similarity=0.055  Sum_probs=100.2

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCE-------EEEEeCCCeEEEEEccCCce-EEEEE
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM-------LYSGSSDGYIRSWDAKLGYE-IYRIT  169 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~-------l~t~~~dg~i~vwd~~~~~~-~~~~~  169 (744)
                      -.|..+.....++--|++.|+.+   ....-|.. |.-+.+.|+.+.       -+.|-.|..|.-||.+-... .....
T Consensus       347 lil~~~~~~~~l~klDIE~GKIV---eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIV---EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             eEeeCCCCcCcceeeecccceee---eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            35566667777888899877766   55555555 778888887542       23455688999999863222 11111


Q ss_pred             ecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                      .   .+.........|.+-..+|+++.|+.+|.|++||--..+....+.+-..+|..+..+.+|.+|++.+ +..+.+-+
T Consensus       423 q---~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  423 Q---SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             e---ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            1   1111234556777778889999999999999999732333355778889999999999999887664 55666666


Q ss_pred             ccc
Q 004581          250 ASC  252 (744)
Q Consensus       250 ~~~  252 (744)
                      ..-
T Consensus       499 t~~  501 (644)
T KOG2395|consen  499 TLI  501 (644)
T ss_pred             Eec
Confidence            543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.024  Score=56.70  Aligned_cols=147  Identities=14%  Similarity=0.138  Sum_probs=101.4

Q ss_pred             eEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCcccccccc----ccccCCccccCCCCCCCCCcCccCCCC
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTN----SDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         8 l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      |.++.....|.-.|++.|+.+...+.|.. |.-+.+.|+.+.-=.....    -..+.+.-|+.+-.....-........
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            56667777888899999999999887665 8888899887532111111    112334444444333322233333444


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA  159 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~  159 (744)
                      ..+....|.....+.++|+|+.+|.|++||-. +....  ..|.+-..+|..+..+.||++++..+ +.++.+-++
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~~AK--TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GRRAK--TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeehhh-hhhhh--hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            45566677777788899999999999999974 33332  67788899999999999999988766 447777765

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.62  E-value=0.0043  Score=54.94  Aligned_cols=70  Identities=14%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEE-EEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEE
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVL-SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT  169 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~  169 (744)
                      ..+++|+.+|.|.+|+........  .....-...|. -+.-..++.+..+++.||.||.|+++-++.+....
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~--d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHS--DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             ceEEeecccceEEEecCCccchHH--HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            489999999999999985222111  11111222332 23333455678889999999999998877766554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=0.26  Score=45.57  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=89.3

Q ss_pred             cccEEEEeeCCCE-EEEEeCCC-cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-----C
Q 004581          469 FAHSMIFSYDSSQ-LIIAGHDR-RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-----F  541 (744)
Q Consensus       469 ~v~~i~~spd~~~-l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~-----d  541 (744)
                      ....|+|+|...+ ++.+-.-| ...++|....+...++.....         ..---.=.|||||.+|.+.-.     .
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~---------RHfyGHGvfs~dG~~LYATEndfd~~r  139 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG---------RHFYGHGVFSPDGRLLYATENDFDPNR  139 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC---------ceeecccccCCCCcEEEeecCCCCCCC
Confidence            4567888886554 55555555 467899887776666554110         111223479999999987643     3


Q ss_pred             CcEEEEECCCcce-EEEEecCCCCceeEEeecCCCCCeEEEEec------C------------CeEEEEEcCCCcccccc
Q 004581          542 GDVYIFNLEIQRQ-HWFISRLEGASVTAAGFPPQNNNVLIITTS------S------------NQVYVFDVEAKQLGEWS  602 (744)
Q Consensus       542 g~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~------d------------~~v~vwd~~~~~~~~ws  602 (744)
                      |.|-|||...+-. .-.++. |+-.+..+.|.+ ||+.|+++..      |            -++.+.|..+|++.+  
T Consensus       140 GViGvYd~r~~fqrvgE~~t-~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie--  215 (366)
T COG3490         140 GVIGVYDAREGFQRVGEFST-HGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE--  215 (366)
T ss_pred             ceEEEEecccccceeccccc-CCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh--
Confidence            6899999985432 233433 556778899999 9999998753      1            134445544554422  


Q ss_pred             ccccCCcccccccCCCceEEEEeCCCCC
Q 004581          603 MQHTFVLPRRYQEFPGEVIGLSFSPSPS  630 (744)
Q Consensus       603 ~~~~~~~~~~~~~~~~~v~~i~fspdg~  630 (744)
                         ...+|..+  +.-.+..+...+||.
T Consensus       216 ---kh~Lp~~l--~~lSiRHld~g~dgt  238 (366)
T COG3490         216 ---KHTLPASL--RQLSIRHLDIGRDGT  238 (366)
T ss_pred             ---hccCchhh--hhcceeeeeeCCCCc
Confidence               11233222  345788889888854

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.59  E-value=0.0022  Score=56.77  Aligned_cols=143  Identities=17%  Similarity=0.109  Sum_probs=81.9

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      .+..-+.||.|+=+++...+.-  .+.-.-|...-.-+.+   +..|+.|+.+|.|.+|+..-......+..      .+
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~------s~  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVC------SG  100 (238)
T ss_pred             hhccccCCcccccchhhhhhhh--hhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhh------cc
Confidence            3444566777777776421111  0111122222222222   35688999999999998762211111110      01


Q ss_pred             CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccc-cceeEEEEcCCCCEEEee--cCCCeEEEEEccc
Q 004581          179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK-GDVNALAAAPSHNRVFST--GSDGQVILYKASC  252 (744)
Q Consensus       179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~~~--~~dg~i~iw~~~~  252 (744)
                      .......+.-..++ ...+++.+|.|+.|++.-++.+.....|. .++..+..+..+..+..+  +.|..++.|++..
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            22222222223344 77889999999999999888888777777 555555555555666665  6666667776654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.59  E-value=0.053  Score=59.10  Aligned_cols=144  Identities=17%  Similarity=0.115  Sum_probs=93.2

Q ss_pred             ecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581           11 SSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH   90 (744)
Q Consensus        11 ~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (744)
                      ......|.-.|+++|+.+...+.|... .-..|.|+.+.-                                        
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~a----------------------------------------  538 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFA----------------------------------------  538 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCc-ceeEeccccccc----------------------------------------
Confidence            345678999999999999999887643 233444554211                                        


Q ss_pred             ccccccCCeEEEEecCCeEEEEEecCCC-ceeE--eecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEE
Q 004581           91 EQSVVEDRRVALACDDGCVRIYRITDSD-ELIY--HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR  167 (744)
Q Consensus        91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~-~~~~--~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~  167 (744)
                         --.+.....|-.++.+..||..-.+ .+..  .+.+ .......|++-+.+| +||.|+.+|.||+||- .|....+
T Consensus       539 ---qlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT  612 (794)
T PF08553_consen  539 ---QLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKT  612 (794)
T ss_pred             ---ccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhh
Confidence               0001346677788899999987332 2211  0111 234567788777666 6999999999999994 4433222


Q ss_pred             EEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581          168 ITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS  208 (744)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~  208 (744)
                      ...       +...+|..|..+.||..+.+..+..|.+++.
T Consensus       613 ~lp-------~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  613 ALP-------GLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             cCC-------CCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            211       5678999999999995555555666777664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.53  E-value=0.38  Score=51.81  Aligned_cols=145  Identities=15%  Similarity=0.136  Sum_probs=73.7

Q ss_pred             CCeEEEEecC------CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCceE
Q 004581           97 DRRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWDAKLGYEI  165 (744)
Q Consensus        97 ~~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg-----~i~vwd~~~~~~~  165 (744)
                      +...++|+.|      ..+..||...++ ......+.......-....  +|..-|.|+.||     +|-.||..+.+--
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            3478888888      367778876544 2212223222222222222  688888998886     4677777654322


Q ss_pred             EEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCC------CEEEEeCCCcceEEEeeccccce-eEEEEcCCCCEEE
Q 004581          166 YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTG------SVQFWDSRHGTLLQAHSFHKGDV-NALAAAPSHNRVF  237 (744)
Q Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg------~i~vwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~l~  237 (744)
                      ..-..       .....-.+++.. +| ..++|+.++      .+..||..+++....-....... ..++. -++...+
T Consensus       410 ~va~m-------~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYv  480 (571)
T KOG4441|consen  410 PVAPM-------LTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYV  480 (571)
T ss_pred             ccCCC-------CcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEE
Confidence            11110       011111122222 45 566676443      57889988765543222111111 11232 2466777


Q ss_pred             eecCCCe-----EEEEEcccC
Q 004581          238 STGSDGQ-----VILYKASCE  253 (744)
Q Consensus       238 ~~~~dg~-----i~iw~~~~~  253 (744)
                      .||.|+.     |..||..+.
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             ECCccCCCccceEEEEcCCCC
Confidence            7887763     556666553

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.47  E-value=1.4  Score=45.98  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-----------CeEEEEEccCCceE--EEEEe
Q 004581          104 CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----------GYIRSWDAKLGYEI--YRITV  170 (744)
Q Consensus       104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-----------g~i~vwd~~~~~~~--~~~~~  170 (744)
                      ++...|+++|+.+++.+.  ..+....  -..++|.+|++.|+....+           ..|+.|.+.+...-  ..+..
T Consensus       147 ~e~~~l~v~Dl~tg~~l~--d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~  222 (414)
T PF02897_consen  147 SEWYTLRVFDLETGKFLP--DGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE  222 (414)
T ss_dssp             SSEEEEEEEETTTTEEEE--EEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred             CceEEEEEEECCCCcCcC--Ccccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence            334569999998775543  2222211  2239999999887665432           24788888776433  22321


Q ss_pred             cCCCCCCCCceeEEEEEEecCC-e-EEEEcCC---CCEEEEeCCCc
Q 004581          171 GLGGLGSGPELCIWSLLSLRCG-T-LVSADST---GSVQFWDSRHG  211 (744)
Q Consensus       171 ~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~d---g~i~vwd~~~~  211 (744)
                      .      ........+..++|+ + ++.....   ..+.+.|+..+
T Consensus       223 ~------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  223 P------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             T------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             c------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            0      112225678889998 3 3333332   34777788764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.44  E-value=0.0092  Score=38.77  Aligned_cols=32  Identities=16%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECC
Q 004581          519 SEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       519 ~~~~i~~l~~spdg~~las~~~dg~i~iwd~~  550 (744)
                      ....|..++|+|...+||.++.+|.|.+|.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            35569999999999999999999999999993

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.41  E-value=0.61  Score=44.42  Aligned_cols=95  Identities=16%  Similarity=0.067  Sum_probs=50.5

Q ss_pred             eEEEEecCCeEEEEE-ecCCCceeEeecccCccCcEEEEEEecCCCEEEEEe---CCCeEEEEEccCCce--EEEEEecC
Q 004581           99 RVALACDDGCVRIYR-ITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS---SDGYIRSWDAKLGYE--IYRITVGL  172 (744)
Q Consensus        99 ~la~~~~dg~i~iwd-~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~---~dg~i~vwd~~~~~~--~~~~~~~~  172 (744)
                      ..+....+...+++. ..++...........-.+.|.++.+||||..+|...   .++.|.+=-+.....  ...+..+ 
T Consensus        79 ~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~-  157 (253)
T PF10647_consen   79 VWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP-  157 (253)
T ss_pred             EEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc-
Confidence            444444555556663 222322221112222222899999999999888765   356777765532111  1111111 


Q ss_pred             CCCCCCCceeEEEEEEecCCeE
Q 004581          173 GGLGSGPELCIWSLLSLRCGTL  194 (744)
Q Consensus       173 ~~~~~~~~~~v~~~~~~~~~~l  194 (744)
                      ..........+..+.|.+++.|
T Consensus       158 ~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  158 RRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             eEecccccCcceeeeecCCCEE
Confidence            1111134568899999999943

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.40  E-value=0.011  Score=38.48  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceE
Q 004581          130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus       130 ~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~  165 (744)
                      ...|.+++|+|..++||.++.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            356999999999999999999999999998 55543

>PHA02713 hypothetical protein; Provisional

Probab=96.31  E-value=0.14  Score=55.30  Aligned_cols=71  Identities=11%  Similarity=0.101  Sum_probs=38.6

Q ss_pred             cccccccCCeEEEEecC------CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC-----eEEEEE
Q 004581           90 HEQSVVEDRRVALACDD------GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-----YIRSWD  158 (744)
Q Consensus        90 ~~~~~~~~~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg-----~i~vwd  158 (744)
                      +.....++...++|+.+      ..+..||..++.- .....+.........+  .-+|+..+.||.++     ++..||
T Consensus       297 ~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Yd  373 (557)
T PHA02713        297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYT  373 (557)
T ss_pred             eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEE
Confidence            33444566777777753      3477788764432 1112222111122222  23677778887653     478899


Q ss_pred             ccCCc
Q 004581          159 AKLGY  163 (744)
Q Consensus       159 ~~~~~  163 (744)
                      ..+.+
T Consensus       374 p~~~~  378 (557)
T PHA02713        374 MGDDK  378 (557)
T ss_pred             CCCCe
Confidence            87654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.31  E-value=2.5  Score=47.12  Aligned_cols=220  Identities=14%  Similarity=0.099  Sum_probs=118.2

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDS   84 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (744)
                      |++|+.++.++.|.-.|..||+.+-++..... +........            -.+..||......             
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~-~~~~~~~~~------------cRGvay~~~p~~~-------------  247 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLK-TEAGRQHQT------------CRGVSYYDAPAAA-------------  247 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCC-ccccccccc------------ccceEEecCCccc-------------
Confidence            77899999999999999999999988764321 110000000            0112222210000             


Q ss_pred             CcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcE-------------EEEEEec--CCCEEEEEe
Q 004581           85 DSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRV-------------LSVTWSA--DGNMLYSGS  149 (744)
Q Consensus        85 ~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V-------------~~~~~s~--dg~~l~t~~  149 (744)
                      ............+.+++.++.|+.+.-.|..+++.+.   .+. ..+.|             ..+.-+|  .+..+++|+
T Consensus       248 ~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W---~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~  323 (764)
T TIGR03074       248 AGPAAPAAPADCARRIILPTSDARLIALDADTGKLCE---DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGG  323 (764)
T ss_pred             ccccccccccccCCEEEEecCCCeEEEEECCCCCEEE---Eec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEe
Confidence            0000000011233578888889998888888777652   221 11111             0111111  134566664


Q ss_pred             C----------CCeEEEEEccCCceEEEEEecCCCCC----CC-----CceeEE-EEEEecCC-eEEEEc----------
Q 004581          150 S----------DGYIRSWDAKLGYEIYRITVGLGGLG----SG-----PELCIW-SLLSLRCG-TLVSAD----------  198 (744)
Q Consensus       150 ~----------dg~i~vwd~~~~~~~~~~~~~~~~~~----~~-----~~~~v~-~~~~~~~~-~l~s~~----------  198 (744)
                      .          +|.|+-+|+++|+.+.++........    .+     ....+| ..++.+.. +++.+.          
T Consensus       324 ~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~  403 (764)
T TIGR03074       324 RVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGG  403 (764)
T ss_pred             cccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCC
Confidence            3          68899999999999998874211000    00     001111 12333332 222211          


Q ss_pred             --------CCCCEEEEeCCCcceEEEeeccccceeE---------EEEcC-CCC---EEEeecCCCeEEEEEcccCc
Q 004581          199 --------STGSVQFWDSRHGTLLQAHSFHKGDVNA---------LAAAP-SHN---RVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       199 --------~dg~i~vwd~~~~~~~~~~~~h~~~v~~---------l~~~~-~~~---~l~~~~~dg~i~iw~~~~~~  254 (744)
                              ..+.|.-.|.++|+....++....++..         +.+.. +|+   .++.++.+|.+.++|..+++
T Consensus       404 ~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       404 DRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             ccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                    2355777888999988777652222221         12222 553   78889999999999999887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.30  E-value=0.97  Score=42.29  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=77.7

Q ss_pred             CcEEEEEEecCCCEEEEEeCCC--eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581          131 GRVLSVTWSADGNMLYSGSSDG--YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS  208 (744)
Q Consensus       131 ~~V~~~~~s~dg~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~  208 (744)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+|+.......+       ...--..++...|......-.++...+||.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-------~~~FgEGit~~~d~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-------PRYFGEGITILGDKLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-------TT--EEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-------ccccceeEEEECCEEEEEEecCCeEEEEcc
Confidence            3456788877888888887755  7999999999988877753       233334455555555566677899999999


Q ss_pred             CCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccC
Q 004581          209 RHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       209 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                      .+-+.+.++.. .+.=..|+  .|++.|+.......+.++|..+-
T Consensus       118 ~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  118 NTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             TTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred             ccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCccc
Confidence            99988888865 35566777  45677777766778888887653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.26  E-value=1.5  Score=44.01  Aligned_cols=148  Identities=16%  Similarity=0.141  Sum_probs=71.7

Q ss_pred             CeEEEEe-cCCeEEEEEec-CCCceeEeecccC---cc----CcEEEEEEecCCCEEEEEeC------CCeEEEEEccCC
Q 004581           98 RRVALAC-DDGCVRIYRIT-DSDELIYHRSLPR---VS----GRVLSVTWSADGNMLYSGSS------DGYIRSWDAKLG  162 (744)
Q Consensus        98 ~~la~~~-~dg~i~iwd~~-~~~~~~~~~~~~~---h~----~~V~~~~~s~dg~~l~t~~~------dg~i~vwd~~~~  162 (744)
                      ++|+..+ ..+.|+|.|+. +.......+++..   +.    ..-..+---|+|+.++|+-.      -|-+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            5666666 78899999998 3334433344442   11    11222333468999888632      356888998877


Q ss_pred             ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEc--------------------CCCCEEEEeCCCcceEEEeeccc
Q 004581          163 YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD--------------------STGSVQFWDSRHGTLLQAHSFHK  221 (744)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~h~  221 (744)
                      +.......+.     +....-+.+.+.|.. .++|..                    ...++.+||+.+.+.++++..-.
T Consensus       168 ~v~g~We~~~-----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  168 EVKGRWEKDR-----GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             -EEEE--SB------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             cccceeccCC-----CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            7776665321     223445566677765 566553                    23579999999999999997532


Q ss_pred             --cceeEEEEcCC--CCEEEee-cCCCeEEEEEc
Q 004581          222 --GDVNALAAAPS--HNRVFST-GSDGQVILYKA  250 (744)
Q Consensus       222 --~~v~~l~~~~~--~~~l~~~-~~dg~i~iw~~  250 (744)
                        .....+.|..+  ..+=+++ ....+|..|-.
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k  276 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK  276 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence              34677888654  4444443 34555665544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.23  E-value=1.5  Score=43.83  Aligned_cols=57  Identities=19%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             EEEEEEecCCeEEEEcCCCCEEEEeCCCcce---EEEe----eccccceeEEEEcCC---CCEEEeec
Q 004581          183 IWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAH----SFHKGDVNALAAAPS---HNRVFSTG  240 (744)
Q Consensus       183 v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~----~~h~~~v~~l~~~~~---~~~l~~~~  240 (744)
                      -++|+|.|||.++.+...|.|++++ ..+..   +..+    .........++++|+   ..+|++..
T Consensus         4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~   70 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYY   70 (331)
T ss_dssp             EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred             ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEE
Confidence            4789999999777788899999999 33443   2222    123456799999994   34555443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.16  E-value=1.6  Score=43.53  Aligned_cols=175  Identities=15%  Similarity=0.142  Sum_probs=98.8

Q ss_pred             CCeEEEEEc-CCCCEEEEEcCCc------eEEEEeecCCCCCceEE-eeeccCCccc--------ccccEEEEeeCCCEE
Q 004581          419 RKIICSTIS-NSGMLFAYSDHVK------PSLFELKKGKVGQGEWI-INKRQLPRKL--------QFAHSMIFSYDSSQL  482 (744)
Q Consensus       419 ~~i~~~~~s-~~g~~la~~~~~~------v~l~~~~~~~~~~~~~~-~~~~~~~~~~--------~~v~~i~~spd~~~l  482 (744)
                      ..+..+.+. .++.++++++++.      +..+.+........-.. .....+....        -..-+|++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            557788888 5667888887777      55555544111111101 1111111111        144578887888888


Q ss_pred             EEEeCC------CcEEEEEccCCceeeeeccCccccc----ccCCCCCCceEEEEECCCCCEEEEEeC-----CC--c--
Q 004581          483 IIAGHD------RRIYVVDVSSSELLHTFTPCREEHD----REIQPSEPPITKMFTSSDGQWLAAVNC-----FG--D--  543 (744)
Q Consensus       483 ~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~spdg~~las~~~-----dg--~--  543 (744)
                      ++.-.+      ..|+.++.. |+.+..+..+.....    ......+...-+|+++|||+.|.++..     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            877667      788888876 777666633211100    022335677899999999996666533     22  1  


Q ss_pred             -----EEEE--ECCC-c--ceEEEEecC------CCCceeEEeecCCCCCeEEEEe-----cCCeEEEEEcCC
Q 004581          544 -----VYIF--NLEI-Q--RQHWFISRL------EGASVTAAGFPPQNNNVLIITT-----SSNQVYVFDVEA  595 (744)
Q Consensus       544 -----i~iw--d~~~-~--~~~~~~~~~------~~~~v~~l~~sp~~~~~l~~~~-----~d~~v~vwd~~~  595 (744)
                           ++|+  |..+ +  .....++..      ....|..+.+-+ ++++|+.-=     ....++||.+.-
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEEc
Confidence                 4554  4443 2  122223222      235789999999 888666532     234666666553

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.88  E-value=2.4  Score=43.13  Aligned_cols=92  Identities=10%  Similarity=0.074  Sum_probs=57.2

Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccc----cCCCC--CCceEEEEECCC-CCE-EEEEeC
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDR----EIQPS--EPPITKMFTSSD-GQW-LAAVNC  540 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~~--~~~i~~l~~spd-g~~-las~~~  540 (744)
                      .+.+++.+|++++.|+.+.=|.|.++|+.++..++.+++.+...-.    ....+  ...-....-.+. ..+ ++-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            5778899999999888887899999999999999999885431100    00000  000000000000 112 334557


Q ss_pred             CCcEEEEECCCcceEEEEec
Q 004581          541 FGDVYIFNLEIQRQHWFISR  560 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~~~~~  560 (744)
                      -|.|.||.+..+..+..+..
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CCeEEEEecCCCCEEEEEEe
Confidence            88999999998877665543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.83  E-value=3.9  Score=45.20  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=55.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEEeecC---C----CCCceEEeee-----ccCC-cccccccEEEEeeC---CCE
Q 004581          418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKG---K----VGQGEWIINK-----RQLP-RKLQFAHSMIFSYD---SSQ  481 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~---~----~~~~~~~~~~-----~~~~-~~~~~v~~i~~spd---~~~  481 (744)
                      ...|..+.++|+|++||..+...|.|..+...   .    ++...-....     ..+. .....|..+.|+|.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            36788999999999999977778877777531   0    1111111111     1111 12237889999986   589


Q ss_pred             EEEEeCCCcEEEEEccCC
Q 004581          482 LIIAGHDRRIYVVDVSSS  499 (744)
Q Consensus       482 l~~~~~dg~i~v~d~~~~  499 (744)
                      |++-..|+++++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.83  E-value=0.31  Score=50.09  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=81.4

Q ss_pred             CCcccccccEEEEeeC----CCEEEEEeCCCcEEEEEcc-----CCceeeeeccCcccccccCCCCCCceEEEEECCCCC
Q 004581          463 LPRKLQFAHSMIFSYD----SSQLIIAGHDRRIYVVDVS-----SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ  533 (744)
Q Consensus       463 ~~~~~~~v~~i~~spd----~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~  533 (744)
                      ..+.+..|..+.|.|-    ...|.+.-....|.||.+.     .++.+..-...-.      ....---..+.|+|...
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~------e~~pvLpQGCVWHPk~~  125 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR------EPFPVLPQGCVWHPKKA  125 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc------CCcccCCCcccccCCCc
Confidence            4455668999999884    3345555667789999984     2233322211000      00111124578999999


Q ss_pred             EEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecCC-eEEEEEcCCCccc
Q 004581          534 WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSN-QVYVFDVEAKQLG  599 (744)
Q Consensus       534 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~-~v~vwd~~~~~~~  599 (744)
                      .|++-.....-.++++.....+....-...+.|.+.+|.+ ||+.|+++-... .-++||-..+.+.
T Consensus       126 iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~qKtL~  191 (671)
T PF15390_consen  126 ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQKTLH  191 (671)
T ss_pred             eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCchhhhh
Confidence            8887766665556676544433333222346899999999 998888875544 7889997766553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.78  E-value=0.51  Score=48.10  Aligned_cols=141  Identities=10%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             cccEEEEeeCCCEEEEEe-----------CCC-cEEEEEcc--CCce--eeeeccCcccccccCCCCCCceEEEEECCCC
Q 004581          469 FAHSMIFSYDSSQLIIAG-----------HDR-RIYVVDVS--SSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDG  532 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~-----------~dg-~i~v~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg  532 (744)
                      ....|+|.++|+.+++-.           ..+ .|.+++-.  +|+.  ...|..           .....+.+++.++|
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----------~l~~p~Gi~~~~~G   83 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----------ELSMVTGLAVAVGG   83 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----------CCCCccceeEecCC
Confidence            678899999999887753           223 67777654  2332  233332           23456889999998


Q ss_pred             CEEEEEeCCCcEEEE-ECCCc-----ceEEEEecCC------CCceeEEeecCCCCCeEEEEecC---------------
Q 004581          533 QWLAAVNCFGDVYIF-NLEIQ-----RQHWFISRLE------GASVTAAGFPPQNNNVLIITTSS---------------  585 (744)
Q Consensus       533 ~~las~~~dg~i~iw-d~~~~-----~~~~~~~~~~------~~~v~~l~~sp~~~~~l~~~~~d---------------  585 (744)
                       +++ ++... |..| +.+..     +....+....      ...+..++|.| ||.+.++.+..               
T Consensus        84 -lyV-~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~  159 (367)
T TIGR02604        84 -VYV-ATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESR  159 (367)
T ss_pred             -EEE-eCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcc
Confidence             444 44443 4444 54321     2222222211      13477899999 88766655521               


Q ss_pred             ----CeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcC
Q 004581          586 ----NQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSA  639 (744)
Q Consensus       586 ----~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~  639 (744)
                          +.|.-++.+++++.            .+...-.-..+++|+|+|+   +|+.+.
T Consensus       160 ~~~~g~i~r~~pdg~~~e------------~~a~G~rnp~Gl~~d~~G~---l~~tdn  202 (367)
T TIGR02604       160 QGLGGGLFRYNPDGGKLR------------VVAHGFQNPYGHSVDSWGD---VFFCDN  202 (367)
T ss_pred             cccCceEEEEecCCCeEE------------EEecCcCCCccceECCCCC---EEEEcc
Confidence                34555555555431            1221223457899999864   555544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=95.77  E-value=0.64  Score=49.39  Aligned_cols=117  Identities=11%  Similarity=0.145  Sum_probs=73.1

Q ss_pred             CCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCcceEEE-EecCCCCceeEEeecCCCCCeEEEEecCCeEEEEE
Q 004581          519 SEPPITKMFTSSDGQWLAAVNCFG-----DVYIFNLEIQRQHWF-ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       519 ~~~~i~~l~~spdg~~las~~~dg-----~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd  592 (744)
                      ..+.-..+.|-|.|..+|+-..||     .|.++.-++.++-.. +.......+..++|+- ....|+++ ..+.|++|-
T Consensus       245 ~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav~-~~n~~~lwt  322 (1243)
T COG5290         245 VTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAVA-EGNLLKLWT  322 (1243)
T ss_pred             cccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHHh-hcceEEEEE
Confidence            344455689999999999987665     466666554332111 1111223556677876 55555554 356799997


Q ss_pred             cCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCC
Q 004581          593 VEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR  649 (744)
Q Consensus       593 ~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~  649 (744)
                      ..+-.   |.-.....        -..+.-+.|.|. +.+.+++.+..-|-.+++..
T Consensus       323 tkNyh---WYLK~e~~--------ip~~s~vkwhpe-~~nTl~f~d~~~I~~V~f~~  367 (1243)
T COG5290         323 TKNYH---WYLKVERQ--------IPGISYVKWHPE-EKNTLLFRDGERILRVFFSE  367 (1243)
T ss_pred             ccceE---EEEEEeec--------CCCcceeeeccc-cCcEEEEecCCeEEEEEeeh
Confidence            66542   33221111        135677899997 66778888999988888754

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.70  E-value=1.5  Score=47.44  Aligned_cols=106  Identities=12%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             eCCCEEEEEeCCC------cEEEEEccCCce--eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC-----c
Q 004581          477 YDSSQLIIAGHDR------RIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-----D  543 (744)
Q Consensus       477 pd~~~l~~~~~dg------~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg-----~  543 (744)
                      -+|+..++|+.++      ++..||..+++-  +..+...           .....  .-.-++...+.|+.|+     +
T Consensus       426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-----------R~~~g--~a~~~~~iYvvGG~~~~~~~~~  492 (571)
T KOG4441|consen  426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-----------RSGFG--VAVLNGKIYVVGGFDGTSALSS  492 (571)
T ss_pred             ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-----------cccce--EEEECCEEEEECCccCCCccce
Confidence            4788888888654      567888765543  2222221           11111  2223777888888776     3


Q ss_pred             EEEEECCCcceEEEEecCCC-CceeEEeecCCCCCeEEEEecCC-----eEEEEEcCCCcc
Q 004581          544 VYIFNLEIQRQHWFISRLEG-ASVTAAGFPPQNNNVLIITTSSN-----QVYVFDVEAKQL  598 (744)
Q Consensus       544 i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l~~~~~d~-----~v~vwd~~~~~~  598 (744)
                      |..||..+.+-...-+.... ..+....+   ++...++|+.||     +|..||..+.+.
T Consensus       493 VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  493 VERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCce
Confidence            77888887764333211111 22222333   677888888876     788888888864

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.67  E-value=3.2  Score=43.05  Aligned_cols=122  Identities=8%  Similarity=0.037  Sum_probs=70.0

Q ss_pred             CccCcEEEEEEecCC----CEEEEEeCCCeEEEEEcc-----CCceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEE
Q 004581          128 RVSGRVLSVTWSADG----NMLYSGSSDGYIRSWDAK-----LGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSA  197 (744)
Q Consensus       128 ~h~~~V~~~~~s~dg----~~l~t~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~  197 (744)
                      |+-..|..++|.|-+    ..|+..-....|.||.+.     +++.+..-..+.+.   ...---..+.|+|.. .|+.-
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e---~~pvLpQGCVWHPk~~iL~VL  130 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE---PFPVLPQGCVWHPKKAILTVL  130 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC---CcccCCCcccccCCCceEEEE
Confidence            556679999999853    345555667799999874     23333222221111   111112345678887 33333


Q ss_pred             cCCCCEEEEeCCC--cceEEEeeccccceeEEEEcCCCCEEEee-cCCCeEEEEEcccC
Q 004581          198 DSTGSVQFWDSRH--GTLLQAHSFHKGDVNALAAAPSHNRVFST-GSDGQVILYKASCE  253 (744)
Q Consensus       198 ~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~~~-~~dg~i~iw~~~~~  253 (744)
                      .....-.+.++..  .+....++ ..+-|.|.+|.+||++|+++ +..=.-++||-...
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            3333333445443  23333444 36789999999999988876 33345677876543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=1.9  Score=40.37  Aligned_cols=157  Identities=13%  Similarity=-0.021  Sum_probs=92.1

Q ss_pred             CceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcce---EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcC
Q 004581          179 PELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESI  255 (744)
Q Consensus       179 ~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~  255 (744)
                      ....+..+.++.+ +...+..+.-++|.|+.+...   +..+.. .+--.++..  .|++..++..|.-+.+.|+.....
T Consensus        85 ~~~l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          85 ARDLFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhhheeEeccc-EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence            4455666777654 566667778899999987432   223322 133344444  488999998777788999887552


Q ss_pred             CCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCC
Q 004581          256 GPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDT  335 (744)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~  335 (744)
                      .              ...........+...++++                                   +++-..+..|+
T Consensus       161 P--------------~lagrya~~~~d~~~v~IS-----------------------------------Gn~AYvA~~d~  191 (370)
T COG5276         161 P--------------QLAGRYALPGGDTHDVAIS-----------------------------------GNYAYVAWRDG  191 (370)
T ss_pred             c--------------eeeeeeccCCCCceeEEEe-----------------------------------cCeEEEEEeCC
Confidence            1              1122222233333444442                                   23566667788


Q ss_pred             eEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581          336 KLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLEN  393 (744)
Q Consensus       336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~  393 (744)
                      -+.+-|+..........     .......+.++..+++..+++..+..+.+-+.....
T Consensus       192 GL~ivDVSnp~sPvli~-----~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~s  244 (370)
T COG5276         192 GLTIVDVSNPHSPVLIG-----SYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPS  244 (370)
T ss_pred             CeEEEEccCCCCCeEEE-----EEecCCceEEEEecCCeeEEEEcccceEEEecCCCC
Confidence            88888887643221110     000112566778888888888887777666655443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.55  Score=41.33  Aligned_cols=188  Identities=10%  Similarity=0.059  Sum_probs=115.4

Q ss_pred             CCCEEEE-E--cCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEE-EEeCCCcEEEEEccCCceeee
Q 004581          429 SGMLFAY-S--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLI-IAGHDRRIYVVDVSSSELLHT  504 (744)
Q Consensus       429 ~g~~la~-~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~-~~~~dg~i~v~d~~~~~~~~~  504 (744)
                      +|.++.+ |  ....|++|++..   +..+|..+   +..  ..+-.=-...-+.++. ..-.+|.-.++|..+.+.+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~---gq~~~s~~---l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~  126 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTT---GQEIFSEK---LAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR  126 (262)
T ss_pred             CCEEEEeccccccceeEEEeccC---ceEEEEee---cCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhcc
Confidence            3444444 4  556788888875   44443322   221  0110000112233333 334588889999998888887


Q ss_pred             eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEE----EecCCCCceeEEeecCCCCCeEE
Q 004581          505 FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF----ISRLEGASVTAAGFPPQNNNVLI  580 (744)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~----~~~~~~~~v~~l~~sp~~~~~l~  580 (744)
                      +.            ..+.=..++.  |++-|..++....++.-|.++......    ..+..-..++-+.|-  +|...|
T Consensus       127 ~~------------y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyA  190 (262)
T COG3823         127 FS------------YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYA  190 (262)
T ss_pred             cc------------cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEE
Confidence            77            3566666664  666688877777788777765543322    222112345667787  688888


Q ss_pred             EEecCCeEEEEEcCCCccccccccccCCcc-cccccCCCceEEEEeCCCCCCcEEEEEcCceE
Q 004581          581 ITTSSNQVYVFDVEAKQLGEWSMQHTFVLP-RRYQEFPGEVIGLSFSPSPSSSSVIIYSARAM  642 (744)
Q Consensus       581 ~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~-~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~  642 (744)
                      =.=.+..|..-+.++|+...|-.-...... ..-..+..-..+|++.|+  .+++++.+-.|=
T Consensus       191 NVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~--~~r~~iTGK~wp  251 (262)
T COG3823         191 NVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQ--QDRFLITGKLWP  251 (262)
T ss_pred             eeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCc--CCeEEEecCcCc
Confidence            777788888889999998888765443221 112233467789999997  578988888773

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.44  E-value=2.8  Score=40.78  Aligned_cols=157  Identities=18%  Similarity=0.099  Sum_probs=83.5

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEE
Q 004581          415 SKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVV  494 (744)
Q Consensus       415 ~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~  494 (744)
                      ......+..+..++||++++++..+.+.+--    +.+...|.......   ...+.+|.|+||+...+++ ..|.|+.=
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~----~~G~~~w~~~~r~~---~~riq~~gf~~~~~lw~~~-~Gg~~~~s  212 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSW----DPGQTTWQPHNRNS---SRRIQSMGFSPDGNLWMLA-RGGQIQFS  212 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-----TT-SS-EEEE--S---SS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEe----cCCCccceEEccCc---cceehhceecCCCCEEEEe-CCcEEEEc
Confidence            3344678888899999999999888765221    23555566555432   2389999999998877755 78888887


Q ss_pred             Ec-cCCceeee-eccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCC--CCceeEEe
Q 004581          495 DV-SSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAG  570 (744)
Q Consensus       495 d~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~  570 (744)
                      +. ...+.-.. +.+        ...-.-.+..++|.+++...|+|+ .| ..+...+.++.-...+...  ......+.
T Consensus       213 ~~~~~~~~w~~~~~~--------~~~~~~~~ld~a~~~~~~~wa~gg-~G-~l~~S~DgGktW~~~~~~~~~~~n~~~i~  282 (302)
T PF14870_consen  213 DDPDDGETWSEPIIP--------IKTNGYGILDLAYRPPNEIWAVGG-SG-TLLVSTDGGKTWQKDRVGENVPSNLYRIV  282 (302)
T ss_dssp             E-TTEEEEE---B-T--------TSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred             cCCCCccccccccCC--------cccCceeeEEEEecCCCCEEEEeC-Cc-cEEEeCCCCccceECccccCCCCceEEEE
Confidence            72 12211111 010        000234488999999988888765 44 3456677776544443322  24678899


Q ss_pred             ecCCCCCeEEEEecCCeEEEE
Q 004581          571 FPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       571 ~sp~~~~~l~~~~~d~~v~vw  591 (744)
                      |.+ + +.-++.+.+|.|.-|
T Consensus       283 f~~-~-~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  283 FVN-P-DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEE-T-TEEEEE-STTEEEEE
T ss_pred             EcC-C-CceEEECCCcEEEEe
Confidence            986 4 556666778877655

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.40  E-value=2.7  Score=42.24  Aligned_cols=214  Identities=12%  Similarity=0.139  Sum_probs=99.3

Q ss_pred             CCCEEEE-E-cCCceEEEEeecCCCCCceEEeeec-cCCc--ccccccEEEEeeCCCEEEEE--eCC----CcEEEEEcc
Q 004581          429 SGMLFAY-S-DHVKPSLFELKKGKVGQGEWIINKR-QLPR--KLQFAHSMIFSYDSSQLIIA--GHD----RRIYVVDVS  497 (744)
Q Consensus       429 ~g~~la~-~-~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~v~~i~~spd~~~l~~~--~~d----g~i~v~d~~  497 (744)
                      +.++|++ + ..+.|+++++.+.....++..+-.. ++..  .......+.--|+|+.++++  +.+    |.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            3467777 5 7788999998863333343222111 1111  11233444445799888876  222    468888888


Q ss_pred             CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC--------------------CCcEEEEECCCcceEEE
Q 004581          498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--------------------FGDVYIFNLEIQRQHWF  557 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~--------------------dg~i~iwd~~~~~~~~~  557 (744)
                      +.+.+...+....        ...--..+.|.|..+.+++...                    -.++.+||+.+.+.+.+
T Consensus       166 tf~v~g~We~~~~--------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~  237 (461)
T PF05694_consen  166 TFEVKGRWEKDRG--------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT  237 (461)
T ss_dssp             T--EEEE--SB-T--------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred             cccccceeccCCC--------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence            8888777765221        2333456777888888877643                    34799999999999888


Q ss_pred             EecCCC-CceeEEeecCC-CCCeEEEEec-CCeEEEEEc-CCCccccccccccCCccc-------------ccccCCCce
Q 004581          558 ISRLEG-ASVTAAGFPPQ-NNNVLIITTS-SNQVYVFDV-EAKQLGEWSMQHTFVLPR-------------RYQEFPGEV  620 (744)
Q Consensus       558 ~~~~~~-~~v~~l~~sp~-~~~~l~~~~~-d~~v~vwd~-~~~~~~~ws~~~~~~~~~-------------~~~~~~~~v  620 (744)
                      +..... ..+..+.|..+ +..+=++++. ..+|..|-- +.+   .|..+....++.             .+...+.-|
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g---~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li  314 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG---EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI  314 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT---EEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred             EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC---CeeeeEEEECCCcccCcccccccccccccCCCce
Confidence            865443 34666666540 3344333333 334444433 444   366665443332             222225668


Q ss_pred             EEEEeCCCCCCcEEEE--EcCceEEEEeCCCCCCCCc
Q 004581          621 IGLSFSPSPSSSSVII--YSARAMCVIDFGRPVDPDD  655 (744)
Q Consensus       621 ~~i~fspdg~~~~~~~--~~~~~~~~~~~~~~~~~~~  655 (744)
                      ++|..|.|.+  .+++  |....+..+|++.|...+.
T Consensus       315 tDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl  349 (461)
T PF05694_consen  315 TDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKL  349 (461)
T ss_dssp             --EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred             EeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcE
Confidence            9999999833  3333  4566788999988765443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.36  E-value=0.79  Score=46.72  Aligned_cols=153  Identities=11%  Similarity=0.103  Sum_probs=81.9

Q ss_pred             CCeEEEEEcCCCCEEEEEc------------C-CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEE
Q 004581          419 RKIICSTISNSGMLFAYSD------------H-VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIA  485 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~------------~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~  485 (744)
                      .....++|.++|+++++..            . +.|.+++-..+++....+    ..+.......+.+++.++|  |.++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV~   87 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYVA   87 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEEe
Confidence            5677899999999887742            1 245555443322222111    1222223467889999988  4444


Q ss_pred             eCCCcEEEE-EccC-C----ceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-------------------
Q 004581          486 GHDRRIYVV-DVSS-S----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-------------------  540 (744)
Q Consensus       486 ~~dg~i~v~-d~~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~-------------------  540 (744)
                      ... .|..| |... +    +....+.+...    ....+......++|.|||.+.++.+.                   
T Consensus        88 ~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~----~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~  162 (367)
T TIGR02604        88 TPP-DILFLRDKDGDDKADGEREVLLSGFGG----QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL  162 (367)
T ss_pred             CCC-eEEEEeCCCCCCCCCCccEEEEEccCC----CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence            444 35444 4421 1    11111111000    00002345778999999987665442                   


Q ss_pred             CCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEecC
Q 004581          541 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS  585 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d  585 (744)
                      .|.|.-++.++.+..... ... ..+..++|+| +++++++-..+
T Consensus       163 ~g~i~r~~pdg~~~e~~a-~G~-rnp~Gl~~d~-~G~l~~tdn~~  204 (367)
T TIGR02604       163 GGGLFRYNPDGGKLRVVA-HGF-QNPYGHSVDS-WGDVFFCDNDD  204 (367)
T ss_pred             CceEEEEecCCCeEEEEe-cCc-CCCccceECC-CCCEEEEccCC
Confidence            145666666665543222 222 3567899999 88877664433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.23  E-value=0.6  Score=49.83  Aligned_cols=124  Identities=8%  Similarity=0.043  Sum_probs=79.7

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecC-CCCCeEEEEecCCeEEEEEcCCCcc
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP-QNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       520 ~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~l~~~~~d~~v~vwd~~~~~~  598 (744)
                      ....+-+.-|.-++..++-+....+.|||...+.......-.....|.++.|.. .+++.+++.+-.+.|.+|.-....+
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            334555666665555444444557999999988755443322346899999863 2788888888899999986542222


Q ss_pred             ----ccccccccCCcccccccCC-CceEEEEeCCCCCCcEEEEEcCceEEEEeCCCC
Q 004581          599 ----GEWSMQHTFVLPRRYQEFP-GEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRP  650 (744)
Q Consensus       599 ----~~ws~~~~~~~~~~~~~~~-~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~  650 (744)
                          ..|..-....    +..+. .+|.+..|-+||.   +++..++.++++|...+
T Consensus       109 ~~~~p~w~~i~~i~----i~~~T~h~Igds~Wl~~G~---LvV~sGNqlfv~dk~~~  158 (631)
T PF12234_consen  109 TNKGPSWAPIRKID----ISSHTPHPIGDSIWLKDGT---LVVGSGNQLFVFDKWLD  158 (631)
T ss_pred             hcCCcccceeEEEE----eecCCCCCccceeEecCCe---EEEEeCCEEEEECCCcC
Confidence                1222111111    12222 5789999999875   77788888988886544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=95.16  E-value=5.5  Score=42.76  Aligned_cols=164  Identities=16%  Similarity=0.158  Sum_probs=86.2

Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee--eeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeC-CC---
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL--HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FG---  542 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~-dg---  542 (744)
                      .+..+.|.++++.+++...+|.|.+||...+...  ..+.....    ....+..-|.....-....++.+.+. ++   
T Consensus       131 kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~----~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  131 KVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS----INVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             ceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc----cceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            7888999999999999999999999999433221  12221100    00001111222221122335555444 32   


Q ss_pred             cEEEEEC--CCcceEEEEe--cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCcccccccCCC
Q 004581          543 DVYIFNL--EIQRQHWFIS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPG  618 (744)
Q Consensus       543 ~i~iwd~--~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~  618 (744)
                      ..+++.+  ++. ....+.  ..+........|+-++|.+.-.  .+++|.+|++..-++.     .+..++.-+.... 
T Consensus       207 ~ykL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~-----~tI~l~~ii~~~~-  277 (670)
T PF10395_consen  207 SYKLISLSNESS-SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQ-----KTISLPSIIDKES-  277 (670)
T ss_pred             EEEEEEeccCCc-ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEE-----EEEEechhhcccc-
Confidence            4667777  222 222221  1111233334444434554333  6778888888655432     1222332222211 


Q ss_pred             ceEEEEeCCCCCCcEEEEEcCceEEEEeC
Q 004581          619 EVIGLSFSPSPSSSSVIIYSARAMCVIDF  647 (744)
Q Consensus       619 ~v~~i~fspdg~~~~~~~~~~~~~~~~~~  647 (744)
                       -.-+.|.|= .++|+++...+.++.+|+
T Consensus       278 -~~~vSl~~~-s~nRvLLs~~nkIyLld~  304 (670)
T PF10395_consen  278 -DDLVSLKPP-SPNRVLLSVNNKIYLLDL  304 (670)
T ss_pred             -ccceEeecC-CCCeEEEEcCCEEEEEee
Confidence             233444442 468999999999999998

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.52  Score=46.64  Aligned_cols=159  Identities=11%  Similarity=0.057  Sum_probs=96.2

Q ss_pred             EEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCce-
Q 004581          423 CSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL-  501 (744)
Q Consensus       423 ~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~-  501 (744)
                      .+-|....+.+.+...+.+.-|........+.+     .-.....++|.++.||+|.+.||+--.+.+|.+++....+. 
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpi-----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI-----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCCCc-----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            344555555555555555555665543322221     11112233899999999999999999999999999853322 


Q ss_pred             -eeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEE
Q 004581          502 -LHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLI  580 (744)
Q Consensus       502 -~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~  580 (744)
                       ..+.+..         ..+..|...+|+.+ .-+|..+..| +.+|-....+....+...+...|.-..|++ +.+.++
T Consensus       102 l~~~~~ck---------~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~L  169 (657)
T KOG2377|consen  102 LEYTQECK---------TKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVIL  169 (657)
T ss_pred             hHHHHHhc---------cCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEe
Confidence             2222211         03456899999877 5677776666 788877655433333333556888899999 666544


Q ss_pred             EEec--CCeEEEEEcCCCcc
Q 004581          581 ITTS--SNQVYVFDVEAKQL  598 (744)
Q Consensus       581 ~~~~--d~~v~vwd~~~~~~  598 (744)
                      .++.  .+++.=+-+.++..
T Consensus       170 L~t~~~~n~lnpf~~~~~~v  189 (657)
T KOG2377|consen  170 LSTTVLENVLNPFHFRAGTM  189 (657)
T ss_pred             eeccccccccccEEEeecee
Confidence            4433  34454455555543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.11  E-value=4.8  Score=41.62  Aligned_cols=114  Identities=18%  Similarity=0.092  Sum_probs=67.5

Q ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCC-cceEEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccc
Q 004581          521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEI-QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLG  599 (744)
Q Consensus       521 ~~i~~l~~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~  599 (744)
                      ..|+.+++..+|+.-+..-.+| +..|+.++ +.......+...++|.++.=.| +++ |..++.+|-++. +.+.++..
T Consensus       376 ~nit~~~~d~~g~lWlgs~q~G-Lsrl~n~n~~avlde~agl~ss~V~aived~-dns-LWIGTs~Glvk~-~pe~~~v~  451 (671)
T COG3292         376 MNITTTLEDSRGRLWLGSMQNG-LSRLDNKNEWAVLDEDAGLPSSEVSAIVEDP-DNS-LWIGTSGGLVKR-DPESGRVL  451 (671)
T ss_pred             cccchhhhccCCcEEEEecccc-hhhhccCCcccccccccCCcccceeeeeecC-CCC-EEEeccCCeEec-Cccccchh
Confidence            5577777877666444433445 66677766 3333344444557888888888 766 889999986553 44444321


Q ss_pred             cccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeC
Q 004581          600 EWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDF  647 (744)
Q Consensus       600 ~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~  647 (744)
                      .     ... +.......+.+..+...|+|+   +|+..+..+...+-
T Consensus       452 n-----~ln-~~~~~l~~s~~~~lg~~~~g~---Lw~a~g~gva~~~s  490 (671)
T COG3292         452 N-----LLN-PGSHGLDGSRVEQLGLGPDGR---LWLAAGSGVAAWES  490 (671)
T ss_pred             c-----ccc-cccCcCCcchhhhhccCCCCc---eEEEecceeeeecc
Confidence            1     000 111111124577888888865   88877777766553

>PHA03098 kelch-like protein; Provisional

Probab=95.10  E-value=0.97  Score=49.04  Aligned_cols=146  Identities=8%  Similarity=0.010  Sum_probs=69.0

Q ss_pred             ccCCeEEEEecC-----CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC------CeEEEEEccCCc
Q 004581           95 VEDRRVALACDD-----GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD------GYIRSWDAKLGY  163 (744)
Q Consensus        95 ~~~~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d------g~i~vwd~~~~~  163 (744)
                      .++...+.|+.+     ..+..||..++. ......+....... +++ .-+++..+.|+.+      ..+..||..+++
T Consensus       341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        341 FNNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             ECCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            445677777765     346777776432 21112222111111 122 2366777777632      358889987654


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC--------CCEEEEeCCCcceEEE--eeccccceeEEEEcCC
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST--------GSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPS  232 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d--------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~  232 (744)
                      -...-..  ..   ...  -.++... ++ .++.|+.+        ..+.+||..+++....  +.........+.+  +
T Consensus       418 W~~~~~~--p~---~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~  487 (534)
T PHA03098        418 WSKGSPL--PI---SHY--GGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--N  487 (534)
T ss_pred             eeecCCC--Cc---ccc--CceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--C
Confidence            3221111  00   111  1122223 44 45555542        2388899887654322  1111111112222  5


Q ss_pred             CCEEEeecCC-----CeEEEEEcccC
Q 004581          233 HNRVFSTGSD-----GQVILYKASCE  253 (744)
Q Consensus       233 ~~~l~~~~~d-----g~i~iw~~~~~  253 (744)
                      +..++.||.+     ..+.+||..+.
T Consensus       488 ~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        488 NKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CEEEEEcCCcCCcccceeEEEeCCCC
Confidence            6666677654     46777877663

>PRK13684 Ycf48-like protein; Provisional

Probab=95.01  E-value=4.2  Score=40.69  Aligned_cols=115  Identities=16%  Similarity=0.158  Sum_probs=69.1

Q ss_pred             ccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581          129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS  208 (744)
Q Consensus       129 h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~  208 (744)
                      -...++++.+.++++.++.+ ..|.+++=....|..-.....+.    ......+.++.+.+++.++.++.+|.+.. ..
T Consensus       213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~----~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~  286 (334)
T PRK13684        213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE----ITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SK  286 (334)
T ss_pred             CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc----cccccceeeEEEcCCCCEEEEcCCCeEEE-eC
Confidence            45678999999999877665 46766532334444332222110    01234578889999887777777886653 44


Q ss_pred             CCcceEEEee---ccccceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581          209 RHGTLLQAHS---FHKGDVNALAAAPSHNRVFSTGSDGQVILYKA  250 (744)
Q Consensus       209 ~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~  250 (744)
                      ..|+.-+...   .-......+.|..+++. +..+..|.|..|+-
T Consensus       287 d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        287 DGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             CCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEecC
Confidence            4444433332   22345778888766655 55567898887764

>PHA02713 hypothetical protein; Provisional

Probab=94.84  E-value=0.92  Score=49.05  Aligned_cols=152  Identities=9%  Similarity=0.047  Sum_probs=76.7

Q ss_pred             ccccccCCeEEEEecCC-----eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC-------------
Q 004581           91 EQSVVEDRRVALACDDG-----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG-------------  152 (744)
Q Consensus        91 ~~~~~~~~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg-------------  152 (744)
                      .....++...+.|+.++     .+..||..++. ......+.........++  -+|+..+.|+.++             
T Consensus       346 ~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        346 SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             eEEEECCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence            34445556777787654     47888876432 221122222111122222  2677777777542             


Q ss_pred             ----------eEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCC------CCEEEEeCCC-cceE-
Q 004581          153 ----------YIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST------GSVQFWDSRH-GTLL-  214 (744)
Q Consensus       153 ----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d------g~i~vwd~~~-~~~~-  214 (744)
                                .+..||.++.+-...-  ++.     ....-.+++...+...+.|+.+      ..+..||.++ .+.. 
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~--~m~-----~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~  495 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLP--NFW-----TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL  495 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecC--CCC-----cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence                      4677877665422111  110     1111112233333345556543      2467899887 4433 


Q ss_pred             -EEeeccccceeEEEEcCCCCEEEeecCCC--eEEEEEcccCc
Q 004581          215 -QAHSFHKGDVNALAAAPSHNRVFSTGSDG--QVILYKASCES  254 (744)
Q Consensus       215 -~~~~~h~~~v~~l~~~~~~~~l~~~~~dg--~i~iw~~~~~~  254 (744)
                       ..+.........+++  ++...++||.|+  .+..||..+.+
T Consensus       496 ~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        496 ITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence             333332233333333  577788888888  67777776644

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.61  E-value=7.8  Score=43.95  Aligned_cols=118  Identities=16%  Similarity=0.197  Sum_probs=80.2

Q ss_pred             CCceEEEEECC-CCCEEEEEeCCCcEEEEECCCc----ceEEEEecCCCCc----------eeEEeecCCCCCeEEEEec
Q 004581          520 EPPITKMFTSS-DGQWLAAVNCFGDVYIFNLEIQ----RQHWFISRLEGAS----------VTAAGFPPQNNNVLIITTS  584 (744)
Q Consensus       520 ~~~i~~l~~sp-dg~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~~~----------v~~l~~sp~~~~~l~~~~~  584 (744)
                      ..+...++|+| +.+.||..+..|+..||++...    ...+.+.....+.          -..+.|.+ +.+.|++++.
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC
Confidence            45677899998 5568999999999999999211    1111111111122          23788988 7777877764


Q ss_pred             CCeEEEEEcCCCccccccccccCCcccccccCCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCC
Q 004581          585 SNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGR  649 (744)
Q Consensus       585 d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~  649 (744)
                       ..+.++|+++.....        . -........|.++.=+|+ +.+.+++..+..+..++...
T Consensus       224 -~~l~~~d~~~~~~~~--------~-l~~~~~~~~IlDv~~~~~-~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  224 -SKLMLIDFESNWQTE--------Y-LVTAKTWSWILDVKRSPD-NPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             -CceEEEECCCCCccc--------h-hccCCChhheeeEEecCC-ccceEEEEecCeEEEEEccC
Confidence             458899999885322        0 112224478999999997 56777788888999999755

These proteins are found in fungi.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.53  E-value=0.15  Score=32.07  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=27.6

Q ss_pred             CceeEEeecCCCC--CeEEEEecCCeEEEEEcCCC
Q 004581          564 ASVTAAGFPPQNN--NVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       564 ~~v~~l~~sp~~~--~~l~~~~~d~~v~vwd~~~~  596 (744)
                      +.++++.|+|..+  ++|+.+-.-+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3689999998445  68999988899999999864

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.50  E-value=2.3  Score=45.53  Aligned_cols=112  Identities=17%  Similarity=0.155  Sum_probs=71.2

Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEE--CCCCCEEEEEeCCCcEEE
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT--SSDGQWLAAVNCFGDVYI  546 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--spdg~~las~~~dg~i~i  546 (744)
                      .+.-+.-|.-++.-++-+....+.|||...+.+...-.-          ...+.|..+.|  .|||+.+.+.+....|.+
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----------cCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence            455555555455544544456899999987764433221          04778999987  569999999899999999


Q ss_pred             EECC-----Cc----ceEEE--EecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEc
Q 004581          547 FNLE-----IQ----RQHWF--ISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       547 wd~~-----~~----~~~~~--~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~  593 (744)
                      |.-.     ..    ..+..  +......+|.+..|.+ +|.+ ++|+ .+++.|+|-
T Consensus       101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~L-vV~s-GNqlfv~dk  155 (631)
T PF12234_consen  101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTL-VVGS-GNQLFVFDK  155 (631)
T ss_pred             EEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeE-EEEe-CCEEEEECC
Confidence            8542     11    12222  2222225899999998 7654 4443 567888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.47  E-value=4.4  Score=40.59  Aligned_cols=107  Identities=18%  Similarity=0.170  Sum_probs=64.0

Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCeEEE-EEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeC
Q 004581          130 SGRVLSVTWSADGNMLYSGSSDGYIRS-WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDS  208 (744)
Q Consensus       130 ~~~V~~~~~s~dg~~l~t~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~  208 (744)
                      .+.+.++.+.|++.+++++. .|.+.. ++ ..++.-.....       .....+.++.+.+++.++..+..|.+++=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLARGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence            56789999999987776654 454442 22 12232222221       4557889999999996555666787754333


Q ss_pred             CCcceEEEeecc----ccceeEEEEcCCCCEEEeecCCCeEE
Q 004581          209 RHGTLLQAHSFH----KGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       209 ~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                      +.|..-.....+    ...+..+++.+++. ++.++.+|.+.
T Consensus       243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~  283 (334)
T PRK13684        243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL  283 (334)
T ss_pred             CCCCccccccCCccccccceeeEEEcCCCC-EEEEcCCCeEE
Confidence            434332222211    23578899998776 45555677654

>PHA03098 kelch-like protein; Provisional

Probab=94.45  E-value=1.5  Score=47.62  Aligned_cols=113  Identities=9%  Similarity=-0.063  Sum_probs=53.7

Q ss_pred             cccccCCeEEEEecCC------eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC-----CeEEEEEcc
Q 004581           92 QSVVEDRRVALACDDG------CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-----GYIRSWDAK  160 (744)
Q Consensus        92 ~~~~~~~~la~~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d-----g~i~vwd~~  160 (744)
                      ....++..++.|+.++      .+..||..+..-. ....+.........+.  -+++..+.||.+     ..+..||..
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence            3345556667776543      4677777644321 1122221112222222  267777777764     357788877


Q ss_pred             CCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCC------CCEEEEeCCCcceE
Q 004581          161 LGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADST------GSVQFWDSRHGTLL  214 (744)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~  214 (744)
                      +++-...-  +..     ....-.+++...+..++.|+.+      ..+..||..+.+..
T Consensus       367 ~~~W~~~~--~lp-----~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        367 ESKWREEP--PLI-----FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCceeeCC--CcC-----cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            65432111  110     1111112222323355555532      45888998875543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.42  E-value=1.3  Score=39.86  Aligned_cols=104  Identities=17%  Similarity=0.242  Sum_probs=68.1

Q ss_pred             CEEEEEeCCCcEEEEEcc--CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC------cEEEE---E
Q 004581          480 SQLIIAGHDRRIYVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG------DVYIF---N  548 (744)
Q Consensus       480 ~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg------~i~iw---d  548 (744)
                      ..|..+.....|.+|++.  ..+++.+|..            -+.|..+.++..|+||++--.+.      .+++|   +
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T------------v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST------------VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc------------hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence            555555667789999997  4567788885            68899999999999999974322      45654   2


Q ss_pred             CC--Ccce---------------------EEEEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581          549 LE--IQRQ---------------------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       549 ~~--~~~~---------------------~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                      ..  ....                     ...+.-+-..++.+++..|..|+ |++|+ ++++.+|.+..+.
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEE
Confidence            21  1111                     11111112347889999996666 45554 5678899887663

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.15  E-value=3  Score=44.56  Aligned_cols=148  Identities=11%  Similarity=0.164  Sum_probs=74.2

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEe-ecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYH-RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      .|.+...+|++++|++. ++..... .-+......|..+.|..+|-.+.+.  +|++.+-+-.....+++++.-+..   
T Consensus        96 eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~---  169 (829)
T KOG2280|consen   96 ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYN---  169 (829)
T ss_pred             eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCc---
Confidence            78888999999999996 4433211 1123344557777776677555554  344444332222223333321110   


Q ss_pred             CCceeEEEEEEecCC--eEEE-Ec-CCCCEEEEeCCCc-ceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581          178 GPELCIWSLLSLRCG--TLVS-AD-STGSVQFWDSRHG-TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~--~l~s-~~-~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      ......|.+ +.|..  .++. .. ..+ ..+...++. .....+......+..+.+||+.++|+-=..+|.|.+-+.+.
T Consensus       170 ~~~~~~Wt~-~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~  247 (829)
T KOG2280|consen  170 ELPKSCWTV-FQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL  247 (829)
T ss_pred             cCCCcceeE-ecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence            111122222 11211  1111 11 111 011111111 11122222236788899999999999988999998887766


Q ss_pred             Cc
Q 004581          253 ES  254 (744)
Q Consensus       253 ~~  254 (744)
                      .+
T Consensus       248 ~~  249 (829)
T KOG2280|consen  248 SQ  249 (829)
T ss_pred             hh
Confidence            44

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=6  Score=42.44  Aligned_cols=40  Identities=20%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             ccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeecc
Q 004581          468 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       468 ~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  507 (744)
                      ..+..+..||+.++|+.-...|.|.+-+.+..+....+..
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            3677889999999999999999999999887776666653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.03  E-value=1.7  Score=35.65  Aligned_cols=109  Identities=13%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccCC--------ceeeeeccCcccccccCCCCCCceEEEEECC-----CCCEEEEEeC
Q 004581          474 IFSYDSSQLIIAGHDRRIYVVDVSSS--------ELLHTFTPCREEHDREIQPSEPPITKMFTSS-----DGQWLAAVNC  540 (744)
Q Consensus       474 ~~spd~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-----dg~~las~~~  540 (744)
                      .|.....-|++++..|+|.|++....        ..++.+.            ....|++|+-.+     +...|+.|+.
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN------------in~~italaaG~l~~~~~~D~LliGt~   72 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN------------INQEITALAAGRLKPDDGRDCLLIGTQ   72 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE------------CCCceEEEEEEecCCCCCcCEEEEecc
Confidence            45555567888899999999987532        2334444            366788886544     3456777754


Q ss_pred             CCcEEEEECCCcceEEEEecCCCCceeEEeecC--CCCCeEEEEecCCeEEEEEcCCCc
Q 004581          541 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP--QNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                       ..|..||++.......... + ..|.++.+-.  +...-|+..+.+..|.-||.+..+
T Consensus        73 -t~llaYDV~~N~d~Fyke~-~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   73 -TSLLAYDVENNSDLFYKEV-P-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             -ceEEEEEcccCchhhhhhC-c-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence             4699999988765432222 2 4677776632  123456777778888888887765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.02  E-value=0.28  Score=30.84  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             CcEEEEEEecCC---CEEEEEeCCCeEEEEEccCC
Q 004581          131 GRVLSVTWSADG---NMLYSGSSDGYIRSWDAKLG  162 (744)
Q Consensus       131 ~~V~~~~~s~dg---~~l~t~~~dg~i~vwd~~~~  162 (744)
                      +.|.++.|||+.   ++|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            478999999854   48888877899999999863

It contains a characteristic DLL sequence motif.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.98  E-value=7.9  Score=39.58  Aligned_cols=183  Identities=18%  Similarity=0.163  Sum_probs=97.2

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccC-cceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSID-FSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~-~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      +++|+.++.++.+...|..+|..+....... ..+..-++-.++                                    
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~------------------------------------  154 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG------------------------------------  154 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc------------------------------------
Confidence            5668888888888888887888887776554 111122222222                                    


Q ss_pred             CCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeec-----ccCccCcEEEEEEecCCCEEEEEeC--CCeEEE
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRS-----LPRVSGRVLSVTWSADGNMLYSGSS--DGYIRS  156 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~-----~~~h~~~V~~~~~s~dg~~l~t~~~--dg~i~v  156 (744)
                                     .+..++.++.+.-.|..++...-....     +.....++     ..++ .+..+..  ++.+.-
T Consensus       155 ---------------~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-----~~~~-~vy~~~~~~~~~~~a  213 (370)
T COG1520         155 ---------------TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-----IASG-TVYVGSDGYDGILYA  213 (370)
T ss_pred             ---------------EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-----eecc-eEEEecCCCcceEEE
Confidence                           444444667776666665554321111     11111122     2233 3444444  667888


Q ss_pred             EEccCCceEEEEEecCCCCCCCC--ceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCC
Q 004581          157 WDAKLGYEIYRITVGLGGLGSGP--ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHN  234 (744)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~  234 (744)
                      .|.++|......+.....-....  ...+..-...-++.+..++.++.+...|..+|+.+..+... ..+       ++.
T Consensus       214 ~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~-~~~-------~~~  285 (370)
T COG1520         214 LNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG-GSV-------QGS  285 (370)
T ss_pred             EEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc-cEe-------ccC
Confidence            88889988877532110000000  01111111112334567777888999999999999888764 111       111


Q ss_pred             EEEee---cCCCeEEEEEccc
Q 004581          235 RVFST---GSDGQVILYKASC  252 (744)
Q Consensus       235 ~l~~~---~~dg~i~iw~~~~  252 (744)
                      .+.+.   ..||.+.++....
T Consensus       286 ~~~~~~~~~~dG~v~~~~~~~  306 (370)
T COG1520         286 GLYTTPVAGADGKVYIGFTDN  306 (370)
T ss_pred             CeeEEeecCCCccEEEEEecc
Confidence            12221   2588888876544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.93  E-value=4.7  Score=36.49  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             EEEEEEecCCCEEEEE-eCCCeEEEEE--ccCCce-----EEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCE
Q 004581          133 VLSVTWSADGNMLYSG-SSDGYIRSWD--AKLGYE-----IYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV  203 (744)
Q Consensus       133 V~~~~~s~dg~~l~t~-~~dg~i~vwd--~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i  203 (744)
                      -+.++|+.|.+.+... +.+-.|.-||  ..+|..     +..++.. +..  .+ ..--.++...+| ..++.-..++|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-~~~--e~-~~PDGm~ID~eG~L~Va~~ng~~V  235 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-QPF--ES-LEPDGMTIDTEGNLYVATFNGGTV  235 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-CCc--CC-CCCCcceEccCCcEEEEEecCcEE
Confidence            3678999887766544 4566787787  556543     3333321 000  00 000112223355 56677778899


Q ss_pred             EEEeCCCcceEEEeeccccceeEEEEcC
Q 004581          204 QFWDSRHGTLLQAHSFHKGDVNALAAAP  231 (744)
Q Consensus       204 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~  231 (744)
                      ...|..+|+.+.++......|+|++|--
T Consensus       236 ~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  236 QKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            9999999999999999999999999964

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.82  E-value=0.73  Score=51.21  Aligned_cols=154  Identities=12%  Similarity=0.039  Sum_probs=91.4

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEE--E-cCCceEEEEeecCCCCCceEEeeeccCCc------ccccccEEEEeeCCC-EE
Q 004581          413 VKSKASRKIICSTISNSGMLFAY--S-DHVKPSLFELKKGKVGQGEWIINKRQLPR------KLQFAHSMIFSYDSS-QL  482 (744)
Q Consensus       413 ~~~~~~~~i~~~~~s~~g~~la~--~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~i~~spd~~-~l  482 (744)
                      +.......+..+...+|+.+.++  . .+..|..||+..-.....   .....+..      ......++.|.|.=. ..
T Consensus        95 ~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~---~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~  171 (1405)
T KOG3630|consen   95 FKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRY---ETTVPLKNSATSFEKPVFQLKNVWNPLVPLNS  171 (1405)
T ss_pred             eeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhh---hhccccccccchhccccccccccccCCccchh
Confidence            33344456677777888877655  2 333677788764211111   00111111      111345566666432 23


Q ss_pred             EEEeCCCcEEEEEccC-CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCc--ceEEEEe
Q 004581          483 IIAGHDRRIYVVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ--RQHWFIS  559 (744)
Q Consensus       483 ~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~--~~~~~~~  559 (744)
                      ++...|+.|++..+.. .+.+..+.            .....++++|||.|+.++.|...|++.-|...-.  ..+...+
T Consensus       172 av~l~dlsl~V~~~~~~~~~v~s~p------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp  239 (1405)
T KOG3630|consen  172 AVDLSDLSLRVKSTKQLAQNVTSFP------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP  239 (1405)
T ss_pred             hhhccccchhhhhhhhhhhhhcccC------------cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC
Confidence            4456688888887742 23333344            4677999999999999999999999988875433  1111222


Q ss_pred             cCCCCceeEEeecCCCCCeEEEE
Q 004581          560 RLEGASVTAAGFPPQNNNVLIIT  582 (744)
Q Consensus       560 ~~~~~~v~~l~~sp~~~~~l~~~  582 (744)
                      ......|.++.|-. ...+|++-
T Consensus       240 ~~e~yrvl~v~Wl~-t~eflvvy  261 (1405)
T KOG3630|consen  240 VEENYRVLSVTWLS-TQEFLVVY  261 (1405)
T ss_pred             cCCCcceeEEEEec-ceeEEEEe
Confidence            22336899999987 66666653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.80  E-value=0.69  Score=45.78  Aligned_cols=160  Identities=10%  Similarity=0.117  Sum_probs=95.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCC-ceEEeeeccCCcc-ccccc-EEEEeeCCCEEEEEeCCCcEEEE-
Q 004581          419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQ-GEWIINKRQLPRK-LQFAH-SMIFSYDSSQLIIAGHDRRIYVV-  494 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~v~-~i~~spd~~~l~~~~~dg~i~v~-  494 (744)
                      ..+..+-+.|||+.+.+-+..++.++.+.+..-.. ++.+    .-++. ...++ ++..-..|.-|.+++.||-|.-| 
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~----dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVD----DSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhh----cCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            44566678899999888766888888887521111 1100    00110 01122 12222356678888889988777 


Q ss_pred             Ecc-CCc----eeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEE
Q 004581          495 DVS-SSE----LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA  569 (744)
Q Consensus       495 d~~-~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l  569 (744)
                      |.. +++    .++.++-           ...++..+.--.+.+-+++-+.+|++.++.....+....-+..  ..+..+
T Consensus       297 dvr~~~~p~l~h~R~f~l-----------~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~--~~~~~~  363 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKL-----------APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY--QAPQLV  363 (733)
T ss_pred             eeecCCCCcceeeecccc-----------CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh--cCccee
Confidence            332 222    2222222           2244444443445566777888899988876655544333322  367889


Q ss_pred             eecCCCCCeEEEEecCCeEEEEEcCCCc
Q 004581          570 GFPPQNNNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       570 ~~sp~~~~~l~~~~~d~~v~vwd~~~~~  597 (744)
                      ++|| .+.+|++-. .|.++++.+++.-
T Consensus       364 ~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         364 AMSP-NQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             eeCc-ccchheeec-CCceEEEEecCCC
Confidence            9999 888887753 5689999998773

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.55  E-value=3.1  Score=45.14  Aligned_cols=165  Identities=10%  Similarity=0.122  Sum_probs=92.8

Q ss_pred             CCEEEEEcCCceEEEEeecCCCCCc---eEEeeecc----CCc-------ccccccEEEEee--CCCEEEEEeCCCcEEE
Q 004581          430 GMLFAYSDHVKPSLFELKKGKVGQG---EWIINKRQ----LPR-------KLQFAHSMIFSY--DSSQLIIAGHDRRIYV  493 (744)
Q Consensus       430 g~~la~~~~~~v~l~~~~~~~~~~~---~~~~~~~~----~~~-------~~~~v~~i~~sp--d~~~l~~~~~dg~i~v  493 (744)
                      ..++.++..+.|.+|++........   .+.+....    ...       ....|+.|....  +...|+++..||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            7788889999999999875222110   01111000    000       111344444332  4567888999999999


Q ss_pred             EEccCC-ceeeeeccC------c-ccccccCCCCCCceEEEEEC--CCCCEEEEEeCCCcEEEEECCCcceEEEE--ecC
Q 004581          494 VDVSSS-ELLHTFTPC------R-EEHDREIQPSEPPITKMFTS--SDGQWLAAVNCFGDVYIFNLEIQRQHWFI--SRL  561 (744)
Q Consensus       494 ~d~~~~-~~~~~~~~~------~-~~~~~~~~~~~~~i~~l~~s--pdg~~las~~~dg~i~iwd~~~~~~~~~~--~~~  561 (744)
                      |.+++- +.+......      + .....-........+.++++  ...++||+++....|.||-+.........  ...
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~  208 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ  208 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence            987321 000000000      0 00000001134578899998  88889999988888888766542111111  111


Q ss_pred             CCCceeEEeecCCC--CC---eEEEEecCCeEEEEEcC
Q 004581          562 EGASVTAAGFPPQN--NN---VLIITTSSNQVYVFDVE  594 (744)
Q Consensus       562 ~~~~v~~l~~sp~~--~~---~l~~~~~d~~v~vwd~~  594 (744)
                      +...|-+++|-+++  +.   +|++++-.|.+.+|++.
T Consensus       209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            33478899998722  22   78888999999998884

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.51  E-value=6.4  Score=36.67  Aligned_cols=238  Identities=8%  Similarity=-0.019  Sum_probs=134.9

Q ss_pred             cceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEcCCceEEEE
Q 004581          366 HNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE  445 (744)
Q Consensus       366 ~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~v~l~~  445 (744)
                      ..++-.|||.+-.+..+.--+=.++...+              .+.+...+.......+.+-|||..-++-+...|.-++
T Consensus        65 ~dvapapdG~VWft~qg~gaiGhLdP~tG--------------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d  130 (353)
T COG4257          65 FDVAPAPDGAVWFTAQGTGAIGHLDPATG--------------EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD  130 (353)
T ss_pred             cccccCCCCceEEecCccccceecCCCCC--------------ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEec
Confidence            35566677766555544333333332222              2455555555677788888998765553332333333


Q ss_pred             eecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEE
Q 004581          446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITK  525 (744)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  525 (744)
                      -.  ......|.+..   ...........|.++|++-+++.. |.---.|-. ...+.+|...          ....-..
T Consensus       131 pk--t~evt~f~lp~---~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaP----------qG~gpyG  193 (353)
T COG4257         131 PK--TLEVTRFPLPL---EHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAP----------QGGGPYG  193 (353)
T ss_pred             Cc--ccceEEeeccc---ccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccC----------CCCCCcc
Confidence            22  12333333331   122236778889999999888753 211111211 1234444432          3445678


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCC--CCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccc
Q 004581          526 MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSM  603 (744)
Q Consensus       526 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~  603 (744)
                      |+..|||..-++.-.+..|-..|..++.. ..++...  ...-+.+--+| -+..-++....+.++.||-......+|- 
T Consensus       194 i~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eyp-  270 (353)
T COG4257         194 ICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYP-  270 (353)
T ss_pred             eEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeee-
Confidence            89999999888877777788777776633 2232211  12334454556 6777777777789999998877654432 


Q ss_pred             cccCCcccccccCCCceEEEEeCCCCCCcEEEEE--cCceEEEEeCCC
Q 004581          604 QHTFVLPRRYQEFPGEVIGLSFSPSPSSSSVIIY--SARAMCVIDFGR  649 (744)
Q Consensus       604 ~~~~~~~~~~~~~~~~v~~i~fspdg~~~~~~~~--~~~~~~~~~~~~  649 (744)
                               +.+.+..-.++..+..   .|+|++  +++.+..+|..+
T Consensus       271 ---------LPgs~arpys~rVD~~---grVW~sea~agai~rfdpet  306 (353)
T COG4257         271 ---------LPGSKARPYSMRVDRH---GRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             ---------CCCCCCCcceeeeccC---CcEEeeccccCceeecCccc
Confidence                     3334445556666654   458874  556677777533

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.45  E-value=10  Score=38.79  Aligned_cols=148  Identities=16%  Similarity=0.237  Sum_probs=81.3

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      .+.+++.++.++.+|..+++..-. +..... -.+..-..-.++. +..++.++.+...|..+|...........     
T Consensus       113 ~i~~g~~~g~~y~ld~~~G~~~W~-~~~~~~-~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~-----  184 (370)
T COG1520         113 KIYVGSWDGKLYALDASTGTLVWS-RNVGGS-PYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAP-----  184 (370)
T ss_pred             eEEEecccceEEEEECCCCcEEEE-EecCCC-eEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCc-----
Confidence            688999999888888765655422 222221 1222333333443 33344789999999999999888664211     


Q ss_pred             CceeEEEEEEecCCeEEEEcC--CCCEEEEeCCCcceEEEeeccc----cceeEEEEcCC-----CCEEEeecCCCeEEE
Q 004581          179 PELCIWSLLSLRCGTLVSADS--TGSVQFWDSRHGTLLQAHSFHK----GDVNALAAAPS-----HNRVFSTGSDGQVIL  247 (744)
Q Consensus       179 ~~~~v~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~-----~~~l~~~~~dg~i~i  247 (744)
                      ....+..--...++.++.+..  ++.+.-.|..+|+.....+.+.    ..+........     +..++.++.++.+..
T Consensus       185 ~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~  264 (370)
T COG1520         185 LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLC  264 (370)
T ss_pred             cccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEE
Confidence            011111111134556666665  6677778888888876643211    11100111111     122455666777778


Q ss_pred             EEcccCc
Q 004581          248 YKASCES  254 (744)
Q Consensus       248 w~~~~~~  254 (744)
                      .+..+++
T Consensus       265 l~~~~G~  271 (370)
T COG1520         265 LDADTGE  271 (370)
T ss_pred             EEcCCCc
Confidence            8877766

>PRK10115 protease 2; Provisional

Probab=93.45  E-value=2.2  Score=47.41  Aligned_cols=111  Identities=11%  Similarity=0.118  Sum_probs=69.7

Q ss_pred             cccEEEEeeCCCEEEEEeC-CC----cEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCC--
Q 004581          469 FAHSMIFSYDSSQLIIAGH-DR----RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCF--  541 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~d--  541 (744)
                      .+..+.+||||++|+.+.. +|    .|++.|+.+|+.+...-.           ...  ..++|++|++.|+....+  
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----------~~~--~~~~w~~D~~~~~y~~~~~~  194 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----------NVE--PSFVWANDSWTFYYVRKHPV  194 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----------Ccc--eEEEEeeCCCEEEEEEecCC
Confidence            5667789999999988744 23    688999988864322211           111  469999999977665432  


Q ss_pred             ----CcEEEEECCCc--ceEEEEecCCCCcee-EEeecCCCCCeEEEEecC---CeEEEEEcC
Q 004581          542 ----GDVYIFNLEIQ--RQHWFISRLEGASVT-AAGFPPQNNNVLIITTSS---NQVYVFDVE  594 (744)
Q Consensus       542 ----g~i~iwd~~~~--~~~~~~~~~~~~~v~-~l~~sp~~~~~l~~~~~d---~~v~vwd~~  594 (744)
                          ..|+.+++.++  +....+.... .... ....+. ++++++..+..   +.+.+|+..
T Consensus       195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~-~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        195 TLLPYQVWRHTIGTPASQDELVYEEKD-DTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCCCCEEEEEECCCChhHCeEEEeeCC-CCEEEEEEEcC-CCCEEEEEEECCccccEEEEECc
Confidence                36888899888  3333343222 2222 333344 77877665543   478888853

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.37  E-value=0.0087  Score=59.08  Aligned_cols=144  Identities=13%  Similarity=0.077  Sum_probs=98.7

Q ss_pred             CCCCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCC
Q 004581            3 LPGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEN   82 (744)
Q Consensus         3 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (744)
                      +.+..|+.++.+..|..||- .++..-.+. ..+..-.|+|..++..                                 
T Consensus        44 ~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdv---------------------------------   88 (615)
T KOG2247|consen   44 PEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDV---------------------------------   88 (615)
T ss_pred             cCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccch---------------------------------
Confidence            44556888888888888883 333333332 2445556666666632                                 


Q ss_pred             CCCcccccccccccCCeEEEEecCCeEEEEEecCCCceeEeeccc-CccCcEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 004581           83 DSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLP-RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKL  161 (744)
Q Consensus        83 ~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~  161 (744)
                                      .++.+-..+.+.+||+.+...-+  -.+. .|....  +.|++.+..++.+...|.++|++-.+
T Consensus        89 ----------------lavlAek~~piylwd~n~eytqq--LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt  148 (615)
T KOG2247|consen   89 ----------------LAVLAEKTGPIYLWDVNSEYTQQ--LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT  148 (615)
T ss_pred             ----------------hhhhhhcCCCeeechhhhhhHHH--HhccCcchHHH--HhhccCCccccccccccceEEEeccc
Confidence                            44555677899999997443321  1111 233333  78999999999999999999999877


Q ss_pred             CceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581          162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR  209 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~  209 (744)
                      .+.+..+-        .|...+.++++.+.++.+.++.|..+.+-...
T Consensus       149 sR~iiv~G--------kh~RRgtq~av~lEd~vil~dcd~~L~v~~qe  188 (615)
T KOG2247|consen  149 SRRIIVMG--------KHQRRGTQIAVTLEDYVILCDCDNTLSVTTQE  188 (615)
T ss_pred             hhhhhhhc--------ccccceeEEEecccceeeecCcHHHHHHhhhc
Confidence            76665553        48899999999999999988888776654433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.16  E-value=19  Score=40.97  Aligned_cols=173  Identities=14%  Similarity=0.115  Sum_probs=100.5

Q ss_pred             CCeEEEEEc-------CCCCEEEEEcCCceEEEEeecCCC------C------CceEEeeeccCCcccccccEEEEee-C
Q 004581          419 RKIICSTIS-------NSGMLFAYSDHVKPSLFELKKGKV------G------QGEWIINKRQLPRKLQFAHSMIFSY-D  478 (744)
Q Consensus       419 ~~i~~~~~s-------~~g~~la~~~~~~v~l~~~~~~~~------~------~~~~~~~~~~~~~~~~~v~~i~~sp-d  478 (744)
                      .+|..++|+       +..++|++-....+.|+.......      .      ..+..+......+  .+...++|+| +
T Consensus        80 ~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg--~~~aDv~FnP~~  157 (765)
T PF10214_consen   80 SPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGG--FPHADVAFNPWD  157 (765)
T ss_pred             CCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCC--CccceEEeccCc
Confidence            556666666       233588888888888888332111      1      0111111111111  1677899998 5


Q ss_pred             CCEEEEEeCCCcEEEEEccCCce--eeeeccCccccccc--CCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581          479 SSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDRE--IQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ  554 (744)
Q Consensus       479 ~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~--~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~  554 (744)
                      .+.||+.+..|...||++.....  ...+.......+.-  .......-..+.|.++-+.|+.++.. .+.++|+++...
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~  236 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ  236 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence            56899999999999999921111  01111100000000  00012444588999998888887654 599999998866


Q ss_pred             EE-EEecCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCC
Q 004581          555 HW-FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEA  595 (744)
Q Consensus       555 ~~-~~~~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~  595 (744)
                      .. .........|..+.-+|.+..++++-+ ...|...++..
T Consensus       237 ~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  237 TEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             cchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            43 222223368999998883334444443 36788888887

These proteins are found in fungi.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.16  E-value=6  Score=39.51  Aligned_cols=105  Identities=21%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             EEEEEEecCCCEEEEEeCC------CeEEEEEccCCceEEEEEecCCC-------CCCCCceeEEEEEEecCC-eEEEEc
Q 004581          133 VLSVTWSADGNMLYSGSSD------GYIRSWDAKLGYEIYRITVGLGG-------LGSGPELCIWSLLSLRCG-TLVSAD  198 (744)
Q Consensus       133 V~~~~~s~dg~~l~t~~~d------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~l~s~~  198 (744)
                      .-+|++.++|.++++.=.+      ..|+.++.. |+.+..+..+..-       ..........+++++|+| .|+++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            3478888888888877667      789999976 8887777543321       223456778999999999 466553


Q ss_pred             C-----CC--C-------EEE--EeCCC-cceEEE----eec-----cccceeEEEEcCCCCEEEe
Q 004581          199 S-----TG--S-------VQF--WDSRH-GTLLQA----HSF-----HKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       199 ~-----dg--~-------i~v--wd~~~-~~~~~~----~~~-----h~~~v~~l~~~~~~~~l~~  238 (744)
                      +     |+  .       +++  +|..+ +.....    +..     ....|..+++.+++++|+.
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            3     22  1       444  44443 322222    221     2456777777777775553

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.03  E-value=1.4  Score=49.21  Aligned_cols=126  Identities=10%  Similarity=-0.029  Sum_probs=81.3

Q ss_pred             EecCCeEEEEEecCCC--------ceeEeecccCccCcEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceE-EEEEecC
Q 004581          103 ACDDGCVRIYRITDSD--------ELIYHRSLPRVSGRVLSVTWSADGN-MLYSGSSDGYIRSWDAKLGYEI-YRITVGL  172 (744)
Q Consensus       103 ~~~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~V~~~~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~  172 (744)
                      .+.+-.|..||+..-.        .+...++......-..++.|+|.=. ..+.+..|+.|+|..+...... ..+    
T Consensus       120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~----  195 (1405)
T KOG3630|consen  120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF----  195 (1405)
T ss_pred             ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc----
Confidence            3445578999986321        1222222223334567888988643 4566677999998876432221 122    


Q ss_pred             CCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeec----cccceeEEEEcCCCCEEEe
Q 004581          173 GGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSF----HKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       173 ~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~~  238 (744)
                           .....+++++|+|.| +++.|...|++.-|... .+....+.+    ....|.|++|-....++++
T Consensus       196 -----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  196 -----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             -----CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence                 356778999999999 99999999999888765 443333332    1467999999876666554

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.93  E-value=1.8  Score=43.04  Aligned_cols=145  Identities=11%  Similarity=0.060  Sum_probs=89.2

Q ss_pred             ccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEe
Q 004581           91 EQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITV  170 (744)
Q Consensus        91 ~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~  170 (744)
                      -.++.+.+.+..+...|.+.=|-+.....-.....-...+++|.++.||+|.+.||.--.+.+|.+.+....+.......
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            33444445555555567777777763221111122223567999999999999999999999999999743332221111


Q ss_pred             cCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC-cceEEEeeccccceeEEEEcCCCCEEEeec
Q 004581          171 GLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSFHKGDVNALAAAPSHNRVFSTG  240 (744)
Q Consensus       171 ~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~  240 (744)
                      ..    ......|....|+.+.-++.-...| +.+|.... .+.++..+.|...|.--.|+++.+.++-++
T Consensus       107 ~c----k~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  107 EC----KTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             Hh----ccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            00    0234457888888765555544444 55555432 445566677888999999999887655443

>PHA02790 Kelch-like protein; Provisional

Probab=92.65  E-value=6.3  Score=41.91  Aligned_cols=142  Identities=9%  Similarity=-0.002  Sum_probs=65.4

Q ss_pred             ccCCeEEEEecCC-----eEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCC--CeEEEEEccCCceEEE
Q 004581           95 VEDRRVALACDDG-----CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD--GYIRSWDAKLGYEIYR  167 (744)
Q Consensus        95 ~~~~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~d--g~i~vwd~~~~~~~~~  167 (744)
                      .++..+++|+.++     .+..||..++.- .....+.........+  .-+|...+.|+.+  ..+..||..+++-...
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W-~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNW-IPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEE-EECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            3455667777543     466777764332 1112222211112222  2367777777753  3577888765432211


Q ss_pred             EEecCCCCCCCCceeEEEEEEecCC-eEEEEcCC---CCEEEEeCCCcceEEEe--eccccceeEEEEcCCCCEEEeecC
Q 004581          168 ITVGLGGLGSGPELCIWSLLSLRCG-TLVSADST---GSVQFWDSRHGTLLQAH--SFHKGDVNALAAAPSHNRVFSTGS  241 (744)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d---g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~~~~~  241 (744)
                        .++.     ....-.+++.. +| ..+.|+.+   ..+..||.++.+....-  ...... .+++ .-++...+.|  
T Consensus       347 --~~l~-----~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~G--  414 (480)
T PHA02790        347 --PSLL-----KPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVG--  414 (480)
T ss_pred             --CCCC-----CCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEEC--
Confidence              1111     11111122222 45 45666654   34778888766543321  111111 1222 2345444445  


Q ss_pred             CCeEEEEEccc
Q 004581          242 DGQVILYKASC  252 (744)
Q Consensus       242 dg~i~iw~~~~  252 (744)
                       |.+.+||..+
T Consensus       415 -G~~e~ydp~~  424 (480)
T PHA02790        415 -RNAEFYCESS  424 (480)
T ss_pred             -CceEEecCCC
Confidence             3467777655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.34  E-value=5.6  Score=44.06  Aligned_cols=79  Identities=16%  Similarity=0.115  Sum_probs=54.5

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEEcc----------CCceE---EEEEecCCCCCCCCceeEEEEEEecCC----e
Q 004581          131 GRVLSVTWSADGNMLYSGSSDGYIRSWDAK----------LGYEI---YRITVGLGGLGSGPELCIWSLLSLRCG----T  193 (744)
Q Consensus       131 ~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~----------~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~----~  193 (744)
                      -.|..+.++|+|++||..|..|. .|-.+-          .|+..   +.+.....-+.......|..+.|+|.+    .
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            36889999999999999988754 333331          12221   122222222233567789999999974    7


Q ss_pred             EEEEcCCCCEEEEeCCC
Q 004581          194 LVSADSTGSVQFWDSRH  210 (744)
Q Consensus       194 l~s~~~dg~i~vwd~~~  210 (744)
                      |+.-.+|+++|+||+..
T Consensus       164 l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEEecCCEEEEEecCC
Confidence            99999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=92.21  E-value=23  Score=39.62  Aligned_cols=48  Identities=8%  Similarity=-0.169  Sum_probs=28.6

Q ss_pred             CCCCCCeeEEe-----cCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCcc
Q 004581            1 MGLPGGRLFSS-----SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSL   50 (744)
Q Consensus         1 ~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~   50 (744)
                      |+++|.+|+.+     +....|.+-|+.+|..+...-  .+.-..++|++|++.+
T Consensus       134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~  186 (686)
T PRK10115        134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTF  186 (686)
T ss_pred             ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEE
Confidence            45666666554     333478888998886443221  1111468999998533

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.97  E-value=11  Score=35.55  Aligned_cols=199  Identities=13%  Similarity=0.129  Sum_probs=121.5

Q ss_pred             ccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEecCCCCeEEEEEcCCCCEEEEEc-CCce
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSD-HVKP  441 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~-~~~v  441 (744)
                      ..+..+.++.+-.+++-.+..++|.++.......            .+..+...  ....++.+  .|++..++. +..+
T Consensus        87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~------------~~~~lnt~--gyaygv~v--sGn~aYVadlddgf  150 (370)
T COG5276          87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT------------LIGFLNTD--GYAYGVYV--SGNYAYVADLDDGF  150 (370)
T ss_pred             hhhheeEecccEEEEEcCCCceEEEeccCCCCcc------------eeccccCC--ceEEEEEe--cCCEEEEeeccCcE
Confidence            5566788888888899888999999998776432            22222222  22334333  467766653 6677


Q ss_pred             EEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCC
Q 004581          442 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP  521 (744)
Q Consensus       442 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (744)
                      -++++..+.....   .  ............++.|  |++-..+..|+-+.|.|+.+... .+|.++..        ...
T Consensus       151 LivdvsdpssP~l---a--grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s-Pvli~~~n--------~g~  214 (370)
T COG5276         151 LIVDVSDPSSPQL---A--GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS-PVLIGSYN--------TGP  214 (370)
T ss_pred             EEEECCCCCCcee---e--eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC-CeEEEEEe--------cCC
Confidence            7788875322211   1  1111111123566664  67777778888899999964321 12222111        244


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCceeEE-eecCCCCCeEEEEecCCeEEEEEcCCC
Q 004581          522 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAA-GFPPQNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       522 ~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l-~~sp~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      .+.++..|++-.+++..  +--+.+-|..+.+..+.+-......+-++ .|.- .+++..++..+.-+.+-|+++.
T Consensus       215 g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         215 GTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             ceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceec-ccceeeeeccccCceeEeccCC
Confidence            68888888886666554  44488889888887666655444444443 2332 4688888888877778888765

>PHA02790 Kelch-like protein; Provisional

Probab=91.92  E-value=11  Score=40.15  Aligned_cols=144  Identities=9%  Similarity=0.008  Sum_probs=68.9

Q ss_pred             ccCCeEEEEecC--CeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCC---eEEEEEccCCceEEEEE
Q 004581           95 VEDRRVALACDD--GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG---YIRSWDAKLGYEIYRIT  169 (744)
Q Consensus        95 ~~~~~la~~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg---~i~vwd~~~~~~~~~~~  169 (744)
                      .++...++|+.+  ..+..||..++ .......+.........+  .-+|+..+.|+.++   .+..||..+.+-..  .
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n-~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~  391 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDA-AWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQF--G  391 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCC-eEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEe--C
Confidence            344566777653  35777876533 222222332111112222  23677777777543   46788876654322  1


Q ss_pred             ecCCCCCCCCceeEEEEEEecCCe-EEEEcCCCCEEEEeCCCcceEEE--eeccccceeEEEEcCCCCEEEeecCC----
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCGT-LVSADSTGSVQFWDSRHGTLLQA--HSFHKGDVNALAAAPSHNRVFSTGSD----  242 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~~~~~d----  242 (744)
                      .++.     ....-.+++ .-++. .+.|   |.+.+||.++.+....  +....... +++. -+++..+.||.+    
T Consensus       392 ~~m~-----~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~  460 (480)
T PHA02790        392 PSTY-----YPHYKSCAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSY  460 (480)
T ss_pred             CCCC-----CccccceEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcc
Confidence            1111     111111222 23554 4444   4578899887654422  22111222 2222 256677777754    


Q ss_pred             -CeEEEEEcccCc
Q 004581          243 -GQVILYKASCES  254 (744)
Q Consensus       243 -g~i~iw~~~~~~  254 (744)
                       ..+..||..++.
T Consensus       461 ~~~ve~Yd~~~~~  473 (480)
T PHA02790        461 IDTIEVYNNRTYS  473 (480)
T ss_pred             cceEEEEECCCCe
Confidence             356777776643

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.91  E-value=0.21  Score=53.70  Aligned_cols=119  Identities=11%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             cccccEEEEee-CCCEEEEEeCCCcEEEEEcc--CCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCc
Q 004581          467 LQFAHSMIFSY-DSSQLIIAGHDRRIYVVDVS--SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGD  543 (744)
Q Consensus       467 ~~~v~~i~~sp-d~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~  543 (744)
                      .+.+-.++|-. +...++  ..-|.+.|||++  .|+....+..+...   ........|.-.-|-++.-++..+..++.
T Consensus       132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~---p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT---PYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecC---cCCCCcceeeecccccccceeeeccCCCc
Confidence            34666677621 222222  234678899985  55544333321100   00011123333344457778888889999


Q ss_pred             EEEEECCCcceEEEEecCCCCceeEEe-----------ecCCCCCeEEEEecCCeEEEEEc
Q 004581          544 VYIFNLEIQRQHWFISRLEGASVTAAG-----------FPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       544 i~iwd~~~~~~~~~~~~~~~~~v~~l~-----------~sp~~~~~l~~~~~d~~v~vwd~  593 (744)
                      |++.++++... ..+.. |+..++.++           .|| ||..+|.+..||.++.|.+
T Consensus       207 i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  207 IRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeEeeechHHH-HHHHh-cCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence            99888765433 22223 655555544           467 8888888888887777765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.70  E-value=0.23  Score=53.40  Aligned_cols=121  Identities=17%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             cccccccccccCCeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEE-----------ecCCCEEEEEeCCCeE
Q 004581           86 SDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTW-----------SADGNMLYSGSSDGYI  154 (744)
Q Consensus        86 ~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~-----------s~dg~~l~t~~~dg~i  154 (744)
                      -....|..+.+.-++..+-.++.|++..+.....    ..+.+|..++..++|           ||||+.+|.++.||.+
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            3455666667778888888999999988864333    556678877766554           8999999999999999


Q ss_pred             EEEEcc-CCceEEEEEecCCCCCCCCc-eeEEEEEEecC-------C---eEEEE-cCCCCEEEEeCCCcceE
Q 004581          155 RSWDAK-LGYEIYRITVGLGGLGSGPE-LCIWSLLSLRC-------G---TLVSA-DSTGSVQFWDSRHGTLL  214 (744)
Q Consensus       155 ~vwd~~-~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-------~---~l~s~-~~dg~i~vwd~~~~~~~  214 (744)
                      +.|.+. +|+...++...-    +.|. .+-.|..|..+       +   .++++ .....+++|.-...+|+
T Consensus       260 ~f~Qiyi~g~~~~rclhew----kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  260 GFYQIYITGKIVHRCLHEW----KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ceeeeeeeccccHhhhhcc----CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            998753 233322221110    0222 22222224432       1   23444 34556999987766665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.30  E-value=1.4  Score=47.68  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=43.7

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC---C---EEEEEeCCCeEEEEEc
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG---N---MLYSGSSDGYIRSWDA  159 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg---~---~l~t~~~dg~i~vwd~  159 (744)
                      ++||+++....|.||-......-.+...-..|...|-+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            588888888899999876322111111122367789999997754   2   7888888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.10  E-value=20  Score=36.73  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCce-----EEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEE
Q 004581          130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE-----IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ  204 (744)
Q Consensus       130 ~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~  204 (744)
                      ...++++.|.+++..++++ .+|.+. |....|+.     ......      ......+.++.|.+++.++.++..|.+.
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~------~~~~~~l~~v~~~~d~~~~a~G~~G~v~  351 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADI------KSRGFGILDVGYRSKKEAWAAGGSGILL  351 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeeccc------CCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence            4578999999999877766 455543 44445532     222221      0123458899999999888888888777


Q ss_pred             EEeCCCcceEEEee---ccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581          205 FWDSRHGTLLQAHS---FHKGDVNALAAAPSHNRVFSTGSDGQVILY  248 (744)
Q Consensus       205 vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw  248 (744)
                      ... ..|+.-....   .-......+.|.++++ .+..+.+|.|.-|
T Consensus       352 ~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~  396 (398)
T PLN00033        352 RST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY  396 (398)
T ss_pred             EeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence            764 3344333322   2245688999987765 4445578887655

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.08  E-value=1.9  Score=39.87  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCccccc---ccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Q 004581          473 MIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHD---REIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       473 i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~  549 (744)
                      +.+..++++|++.+.+|.+++||+.+++.+..-..-.+...   .........|..+.++.+|.-|++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            34567899999999999999999988765432210000000   00002566788888888887776654 577788876


Q ss_pred             CCc
Q 004581          550 EIQ  552 (744)
Q Consensus       550 ~~~  552 (744)
                      +-+
T Consensus        95 ~L~   97 (219)
T PF07569_consen   95 DLG   97 (219)
T ss_pred             ccc
Confidence            543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.05  E-value=1.8  Score=47.06  Aligned_cols=74  Identities=18%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             cCCeEEEEecCCeEEEEEecC----CCceeEeecccC--------------------ccCcEEEEEEec----CCCEEEE
Q 004581           96 EDRRVALACDDGCVRIYRITD----SDELIYHRSLPR--------------------VSGRVLSVTWSA----DGNMLYS  147 (744)
Q Consensus        96 ~~~~la~~~~dg~i~iwd~~~----~~~~~~~~~~~~--------------------h~~~V~~~~~s~----dg~~l~t  147 (744)
                      +...++++..||.+.......    +..... ..+..                    -.+.+.+++.++    +..+|++
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSE-ELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEE-EEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            677899999999998888764    111110 11111                    124566677776    7789999


Q ss_pred             EeCCCeEEEEEccCCceEEEEEe
Q 004581          148 GSSDGYIRSWDAKLGYEIYRITV  170 (744)
Q Consensus       148 ~~~dg~i~vwd~~~~~~~~~~~~  170 (744)
                      .+.|+++|+||+.+++++.....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999888763

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.61  E-value=12  Score=33.39  Aligned_cols=132  Identities=19%  Similarity=0.210  Sum_probs=72.6

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      .-+..-.+|.-.++|..+-+.+   ..+.- ++.=..+  ..|++.|..++...+++.-|.++-....++.....+.   
T Consensus       103 ~y~LTw~egvaf~~d~~t~~~l---g~~~y-~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~---  173 (262)
T COG3823         103 FYQLTWKEGVAFKYDADTLEEL---GRFSY-EGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV---  173 (262)
T ss_pred             EEEEEeccceeEEEChHHhhhh---ccccc-CCcceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCe---
Confidence            4445567788888888755554   22221 1222333  3477778877766688888877766555555432221   


Q ss_pred             CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEee------------ccccceeEEEEcCCCCEEEeec
Q 004581          179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHS------------FHKGDVNALAAAPSHNRVFSTG  240 (744)
Q Consensus       179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~------------~h~~~v~~l~~~~~~~~l~~~~  240 (744)
                      .-..+.-+.|- || .++-.-.+..|..-|.++|+.+..+.            .|..-.+.+++.|++..++..+
T Consensus       174 pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         174 PVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            11222333343 34 33333344455556666666655442            2344567899999885555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.41  E-value=1.6  Score=40.35  Aligned_cols=76  Identities=18%  Similarity=0.233  Sum_probs=49.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCC-------CCceeEEEEEEecCCeEEEEcCCCCEEEEeCCC
Q 004581          138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS-------GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRH  210 (744)
Q Consensus       138 ~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~  210 (744)
                      +..++++|++.+.+|.+++||+.+++.+..-. .......       .....|..+..+.+|..+..-++|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            44578999999999999999999987754431 0000000       345667777778777433444567788887765


Q ss_pred             cceE
Q 004581          211 GTLL  214 (744)
Q Consensus       211 ~~~~  214 (744)
                      +..+
T Consensus        97 ~~W~  100 (219)
T PF07569_consen   97 GCWI  100 (219)
T ss_pred             ceeE
Confidence            4443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.97  E-value=25  Score=36.03  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccCCceE-EEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCc
Q 004581          133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI-YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG  211 (744)
Q Consensus       133 V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~  211 (744)
                      ...+..++||.+++.+..-..++-||  .|... .....       .....+.++.+.+++.++..+..|.+.. ....+
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G  310 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNR-------ASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTG  310 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecC-------CCccceeeeeEcCCCCEEEEeCCceEEE-ecCCC
Confidence            44566778888777765443344454  34332 22221       3556788999999996666667777544 33334


Q ss_pred             c-----eEEEeec--cccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          212 T-----LLQAHSF--HKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       212 ~-----~~~~~~~--h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                      +     .......  ....+..+.|.+++.. +.++..|.+....
T Consensus       311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~  354 (398)
T PLN00033        311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST  354 (398)
T ss_pred             CcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC
Confidence            3     2222222  1235889999988764 5555778666553

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.75  E-value=9.7  Score=38.16  Aligned_cols=169  Identities=14%  Similarity=0.118  Sum_probs=91.8

Q ss_pred             CCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccCCcee-eeeccCcccccccCCCCCCceE-EEEECCCCCEEEEEeC
Q 004581          463 LPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELL-HTFTPCREEHDREIQPSEPPIT-KMFTSSDGQWLAAVNC  540 (744)
Q Consensus       463 ~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~las~~~  540 (744)
                      +......+..+-..|||+.|..-+. ..+.|+++.+..+- +.+....+.      .....|+ ++..-..|.-|.+++.
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg------~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG------DSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC------chHHHHHHHHHHHhCceeEEEEcC
Confidence            3334457888899999999887765 67899988643321 111110000      0111222 2222335667788888


Q ss_pred             CCcEEEE-ECC-CcceEEE-Ee--cCCCCceeEEeecCCCCCeEEEEecCCeEEEEEcCCCccccccccccCCccccccc
Q 004581          541 FGDVYIF-NLE-IQRQHWF-IS--RLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE  615 (744)
Q Consensus       541 dg~i~iw-d~~-~~~~~~~-~~--~~~~~~v~~l~~sp~~~~~l~~~~~d~~v~vwd~~~~~~~~ws~~~~~~~~~~~~~  615 (744)
                      ||.|.-| |+. ++.++.. +.  .....++..+.=-. +.+-+++-+..|++.++.-...++.         +   +..
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l---------L---~~~  355 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL---------L---FER  355 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcce---------e---hhh
Confidence            8888766 332 2221111 10  11112232222221 3344556666777776655444321         1   122


Q ss_pred             CCCceEEEEeCCCCCCcEEEEEcCceEEEEeCCCCCCC
Q 004581          616 FPGEVIGLSFSPSPSSSSVIIYSARAMCVIDFGRPVDP  653 (744)
Q Consensus       616 ~~~~v~~i~fspdg~~~~~~~~~~~~~~~~~~~~~~~~  653 (744)
                      .-..+.-++|||.  .++++..+.+.+..+.++.+-|+
T Consensus       356 ~~~~~~~~~~Sp~--~~~Ll~e~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         356 AYQAPQLVAMSPN--QAYLLSEDQGKIRLAQLENRNPE  391 (733)
T ss_pred             hhcCcceeeeCcc--cchheeecCCceEEEEecCCCCC
Confidence            2246778899996  56788888888888888665554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.74  E-value=1.4  Score=27.76  Aligned_cols=31  Identities=16%  Similarity=0.383  Sum_probs=25.0

Q ss_pred             eCCCEEEEEeC-CCcEEEEEccCCceeeeecc
Q 004581          477 YDSSQLIIAGH-DRRIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       477 pd~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~  507 (744)
                      |++++|+++.. ++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            67888877664 78999999998888877765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.69  E-value=27  Score=35.94  Aligned_cols=157  Identities=13%  Similarity=0.090  Sum_probs=85.4

Q ss_pred             CCcEEEEecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeec------CCeEEEEEeCCeEEEEEeeccCCccc
Q 004581          324 GVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS------HTSLLLVQYSCRLDILSVRLENNVES  397 (744)
Q Consensus       324 ~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~~~i~i~~~~~~~~~~~  397 (744)
                      +.+.++.|+..|.+++|+................   ...+|..+...      .+..+.+-....+.+|.+....+...
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence            3458999999999999998543211111111111   11223332221      23345556788999999854443311


Q ss_pred             CCCCCCCCCcceEEEEEecCCCCeEEEEEcC----C-CCEEEE-EcCCceEEEEeecCCCCCceEEeeeccCCccccccc
Q 004581          398 RSSSGGHASTSLLVQVKSKASRKIICSTISN----S-GMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAH  471 (744)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~-g~~la~-~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  471 (744)
                      .+.   +-....+++....  .....++.-|    . -.+|.+ +-||.+.+|+-+.     ..+   ...++. .--..
T Consensus       113 ~g~---~~~L~~~yeh~l~--~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----~~f---~~~lp~-~llPg  178 (418)
T PF14727_consen  113 HGN---QYQLELIYEHSLQ--RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----FAF---SRFLPD-FLLPG  178 (418)
T ss_pred             cCc---EEEEEEEEEEecc--cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----EEE---EEEcCC-CCCCc
Confidence            000   0111223333322  2233333333    2 245555 7999999998643     111   122333 22455


Q ss_pred             EEEEeeCCCEEEEEeCCCcEEEEEcc
Q 004581          472 SMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       472 ~i~~spd~~~l~~~~~dg~i~v~d~~  497 (744)
                      .+.|.+....+++++.+..+.-|..+
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecHH
Confidence            67888999999999999889988763

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.63  E-value=19  Score=36.93  Aligned_cols=144  Identities=11%  Similarity=0.062  Sum_probs=87.7

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCC--------CEEEEEeCCCeEEEEEccC-CceEEEEE
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG--------NMLYSGSSDGYIRSWDAKL-GYEIYRIT  169 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg--------~~l~t~~~dg~i~vwd~~~-~~~~~~~~  169 (744)
                      .+..|.....++--|++.|+.+   ....-|...  -+.|.|+.        +.|+-.+ +..|.-.|.+- |..+..-.
T Consensus       482 i~~dg~~~~kLykmDIErGkvv---eeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVV---EEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             EEecCCCcccceeeecccceee---eEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeee
Confidence            3445555566667777766555   555556554  46787753        3444444 44555555432 32222211


Q ss_pred             ecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEE
Q 004581          170 VGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK  249 (744)
Q Consensus       170 ~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~  249 (744)
                      .    ..........+..-...|+++.++..|.|++||--.-+....+.+....|..+..+.+|.++++.+. ..+.+-|
T Consensus       556 s----KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d  630 (776)
T COG5167         556 S----KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD  630 (776)
T ss_pred             e----hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence            0    0011233344555556779999999999999996544444556677788999999999998877654 5677777


Q ss_pred             cccC
Q 004581          250 ASCE  253 (744)
Q Consensus       250 ~~~~  253 (744)
                      +...
T Consensus       631 ~~ik  634 (776)
T COG5167         631 VPIK  634 (776)
T ss_pred             cccc
Confidence            6643

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.51  E-value=7.2  Score=39.85  Aligned_cols=92  Identities=7%  Similarity=0.014  Sum_probs=55.7

Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEEEEE---------ccCCceeeeeccCcccccccCCCCCCceEEEEECCCC---CEEE
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVD---------VSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDG---QWLA  536 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~v~d---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg---~~la  536 (744)
                      .|..+..++.|..++.++.+|.+.++=         +++|+..-+........+--.....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            577788899999999999999554432         1334322111100000000001123345678899976   5777


Q ss_pred             EEeCCCcEEEEECCCcceEEEEec
Q 004581          537 AVNCFGDVYIFNLEIQRQHWFISR  560 (744)
Q Consensus       537 s~~~dg~i~iwd~~~~~~~~~~~~  560 (744)
                      .-+.|..|++||+......+..++
T Consensus       185 iL~sdnviRiy~lS~~telylqpg  208 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYLQPG  208 (741)
T ss_pred             EEecCcEEEEEecCCcchhhccCC
Confidence            778899999999987766655443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.22  E-value=3  Score=37.57  Aligned_cols=51  Identities=14%  Similarity=0.188  Sum_probs=40.7

Q ss_pred             CeeEEecCCCeEEEEEcc--CCceeEEeeccCcceeEEeeccCCCccccccccc
Q 004581            6 GRLFSSSIDGSVSEWDLY--DLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNS   57 (744)
Q Consensus         6 ~~l~~~~~d~~i~iwd~~--~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~   57 (744)
                      +.|+.+...+.|.+|++.  ..+++.+|..- +.|..|+++..|+|+++-....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~   81 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKN   81 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeec
Confidence            667777778899999988  45566777754 8999999999999998875443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.01  E-value=13  Score=34.87  Aligned_cols=139  Identities=12%  Similarity=0.086  Sum_probs=74.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC----CceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCC-cEE
Q 004581          418 SRKIICSTISNSGMLFAYSDH----VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR-RIY  492 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~~~----~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg-~i~  492 (744)
                      .....+-++-+||++|.+|.+    ..+++|+... ....+-|......+... ..--+...-|||+.|+.|+... +..
T Consensus        66 d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG~~~~t~E  143 (243)
T PF07250_consen   66 DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGGSNNPTYE  143 (243)
T ss_pred             CCcccCcCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECcccccCC-CccccceECCCCCEEEEeCcCCCccc
Confidence            344455568899999998533    4577877654 22233343332222222 2333444558999999998864 344


Q ss_pred             EEEccC-CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCC
Q 004581          493 VVDVSS-SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEG  563 (744)
Q Consensus       493 v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~  563 (744)
                      +|.-.. ......+.-... ...  ......--.+...|||++++.+..+  -.|||..+.+....++...+
T Consensus       144 ~~P~~~~~~~~~~~~~l~~-~~~--~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  144 FWPPKGPGPGPVTLPFLSQ-TSD--TLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPDLPG  210 (243)
T ss_pred             ccCCccCCCCceeeecchh-hhc--cCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCC
Confidence            444321 111111100000 000  0011112246678999999998765  46678888876666665543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.64  E-value=3.6  Score=46.98  Aligned_cols=140  Identities=14%  Similarity=0.152  Sum_probs=91.3

Q ss_pred             ecCCeEEEEEecCCCceeEeecccCccCcEEEEEEe--------cCCCEEEEEeCCCeEEEEEccCCce-------EEEE
Q 004581          104 CDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS--------ADGNMLYSGSSDGYIRSWDAKLGYE-------IYRI  168 (744)
Q Consensus       104 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s--------~dg~~l~t~~~dg~i~vwd~~~~~~-------~~~~  168 (744)
                      +.|+.+.+|+++++...   ..+.+-...|..|..-        |.=++|+....--.|.++-+.-.+.       ...+
T Consensus        96 TiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             EeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence            56889999999987776   6666666777776643        2223343333334566664422111       0111


Q ss_pred             EecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC----Cc---c-e----------------EEEee-ccccc
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR----HG---T-L----------------LQAHS-FHKGD  223 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~----~~---~-~----------------~~~~~-~h~~~  223 (744)
                      ..+      .....|.++....+|+++.++.||  .+|.+.    .|   + +                +-.+. .+..+
T Consensus       173 ~i~------~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp  244 (1311)
T KOG1900|consen  173 KIS------VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP  244 (1311)
T ss_pred             eee------cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence            111      246778999988999988888898  444432    11   1 1                11123 56779


Q ss_pred             eeEEEEcCCCCEEEeecCCCeEEEEEcccCc
Q 004581          224 VNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       224 v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      |..+++...-+.+++-+..|+|.+|++....
T Consensus       245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  245 IRQITIDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             ceeeEeccccceeeeeccCceEEEEEccCCC
Confidence            9999999888889999999999999998854

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.54  E-value=0.037  Score=54.89  Aligned_cols=136  Identities=18%  Similarity=0.307  Sum_probs=92.6

Q ss_pred             eEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceEEEEEecCCCCCC
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      -++.++.+..+..||-. ++..   -.+ .-.+....++|..+|..++.. -..+.+.+||+.+.... .+..       
T Consensus        48 nlavaca~tiv~~YD~a-gq~~---le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~-------  114 (615)
T KOG2247|consen   48 NLAVACANTIVIYYDKA-GQVI---LEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES-------  114 (615)
T ss_pred             ceehhhhhhHHHhhhhh-ccee---ccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc-------
Confidence            48889999999999975 3221   111 234566789999988876654 44679999999764322 1211       


Q ss_pred             CCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEE
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY  248 (744)
Q Consensus       178 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw  248 (744)
                      +....-.-+.|++.. .++.+...|.+.+++..+.+.+-..--|...++++++.+.+ +.+.++.|..+.+-
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVT  185 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHh
Confidence            111111226777777 78888889999999988777665555589999999999876 56666666655443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.51  E-value=2  Score=27.00  Aligned_cols=41  Identities=20%  Similarity=0.129  Sum_probs=29.4

Q ss_pred             CCCCeeEEec-CCCeEEEEEccCCceeEEeeccCcceeEEeec
Q 004581            3 LPGGRLFSSS-IDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVA   44 (744)
Q Consensus         3 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~s   44 (744)
                      +++++|+++. .++.|.++|+.+++.+..+.. ...-..++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence            4567776655 588999999999998888775 3444455543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.38  E-value=26  Score=34.19  Aligned_cols=235  Identities=9%  Similarity=0.071  Sum_probs=104.2

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCCCc
Q 004581          132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG  211 (744)
Q Consensus       132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~~~  211 (744)
                      ...++.|..+ ..+++ +..+ +.+.....|+.=.++....     ........+....++.....+..|.|..= .+.|
T Consensus        63 ~l~~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~-----~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG  133 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSS-----KLPGSPFGITALGDGSAELAGDRGAIYRT-TDGG  133 (302)
T ss_dssp             EEEEEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----T-----T-SS-EEEEEEEETTEEEEEETT--EEEE-SSTT
T ss_pred             eEEEEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCC-----CCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCC
Confidence            4677888643 44444 4444 3444444555544443210     12233344555556644434445554332 1223


Q ss_pred             ce-EEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeec
Q 004581          212 TL-LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAV  290 (744)
Q Consensus       212 ~~-~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  290 (744)
                      +. ......-.+.+..+..++||++++++..-....-|+-...               .|.+.  -+.-+..|.++.|. 
T Consensus       134 ~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---------------~w~~~--~r~~~~riq~~gf~-  195 (302)
T PF14870_consen  134 KTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---------------TWQPH--NRNSSRRIQSMGFS-  195 (302)
T ss_dssp             SSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---------------S-EEE--E--SSS-EEEEEE--
T ss_pred             CCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---------------cceEE--ccCccceehhceec-
Confidence            22 2333444577889999999998888866555567765432               24332  23356778999997 


Q ss_pred             cCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEEe-cCccCCCCCcccCCCCCCCcccccccee
Q 004581          291 PISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYC-ANEFTKFSPHEICPAPQRVPIHLVHNTI  369 (744)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~  369 (744)
                              |++.                         |......|.|++=+ ..........   ..+.......+..++
T Consensus       196 --------~~~~-------------------------lw~~~~Gg~~~~s~~~~~~~~w~~~---~~~~~~~~~~~ld~a  239 (302)
T PF14870_consen  196 --------PDGN-------------------------LWMLARGGQIQFSDDPDDGETWSEP---IIPIKTNGYGILDLA  239 (302)
T ss_dssp             --------TTS--------------------------EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEE
T ss_pred             --------CCCC-------------------------EEEEeCCcEEEEccCCCCccccccc---cCCcccCceeeEEEE
Confidence                    5543                         33344677777766 2221111110   011111223456788


Q ss_pred             ecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEEe--cCCCCeEEEEEcCCCCEEEEEcCCceEEE
Q 004581          370 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKS--KASRKIICSTISNSGMLFAYSDHVKPSLF  444 (744)
Q Consensus       370 ~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~la~~~~~~v~l~  444 (744)
                      +.+++.+.+.+....-+...+.+.               .-.+...  .-...+..+.|.++.+-++.+.++.+--|
T Consensus       240 ~~~~~~~wa~gg~G~l~~S~DgGk---------------tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  240 YRPPNEIWAVGGSGTLLVSTDGGK---------------TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             ESSSS-EEEEESTT-EEEESSTTS---------------S-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             ecCCCCEEEEeCCccEEEeCCCCc---------------cceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            888777666554432222222111               1111111  11355777778877788888888766544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.47  E-value=16  Score=38.01  Aligned_cols=112  Identities=8%  Similarity=0.095  Sum_probs=62.3

Q ss_pred             cccccEEEEeeCCCEEEEEeCCCcEEEEEccCCce--eeeeccCcccccccCCCCCCceEEEEECCCC------CEEEEE
Q 004581          467 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSEL--LHTFTPCREEHDREIQPSEPPITKMFTSSDG------QWLAAV  538 (744)
Q Consensus       467 ~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg------~~las~  538 (744)
                      +...+.|+|.|||++|++--..|.|++++..++..  +..+...      ...........|+++|+-      ++|...
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v------~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEI------VNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCce------eccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            44788999999998877665579999998654432  2222110      000025678899999884      234333


Q ss_pred             e----------CCCcEEEEECCCc--c---eEEEE---ecCCCCceeEEeecCCCCCeEEEEecC
Q 004581          539 N----------CFGDVYIFNLEIQ--R---QHWFI---SRLEGASVTAAGFPPQNNNVLIITTSS  585 (744)
Q Consensus       539 ~----------~dg~i~iwd~~~~--~---~~~~~---~~~~~~~v~~l~~sp~~~~~l~~~~~d  585 (744)
                      .          ....|.-|.+...  .   ....+   +......-..|+|.| |+.++++.++.
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~  166 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQ  166 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCC
Confidence            1          1234555555421  1   11112   111112345788999 88866665544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.39  E-value=35  Score=34.43  Aligned_cols=198  Identities=18%  Similarity=0.213  Sum_probs=106.4

Q ss_pred             CeEEEEecCCeEEEEEecCCCceeEeecccCccCcEEEEEEe----cCCCE--EEEEeC-C---CeEEEEEccCC-ceEE
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWS----ADGNM--LYSGSS-D---GYIRSWDAKLG-YEIY  166 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s----~dg~~--l~t~~~-d---g~i~vwd~~~~-~~~~  166 (744)
                      .+++....++-+.+||+. ++.+.   .+.  .++++.+..-    -+|+.  |+.++. +   .+|++|.+... ..+.
T Consensus        69 SlIigTdK~~GL~VYdL~-Gk~lq---~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLD-GKELQ---SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             -EEEEEETTTEEEEEETT-S-EEE---EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCEEEEcCC-CcEEE---eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            366666778889999997 66663   332  2344444332    13443  444442 2   47999977531 2233


Q ss_pred             EEEecCCCCCCCCceeEEEEEEe--c-CC--eEEEEcCCCCEEEEeCC---Cc----ceEEEeeccccceeEEEEcCCCC
Q 004581          167 RITVGLGGLGSGPELCIWSLLSL--R-CG--TLVSADSTGSVQFWDSR---HG----TLLQAHSFHKGDVNALAAAPSHN  234 (744)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~--~l~s~~~dg~i~vwd~~---~~----~~~~~~~~h~~~v~~l~~~~~~~  234 (744)
                      .+........ .....++.+|.-  + +|  +.+....+|.+.-|.+.   .+    ++++.+.. ...+..++......
T Consensus       143 ~v~~~~~p~~-~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  143 DVTDPAAPIA-TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG  220 (381)
T ss_dssp             E-CBTTC-EE--SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred             EcCCCCcccc-cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence            3321100000 112235666653  3 34  67778888988877664   23    45677765 45788899998888


Q ss_pred             EEEeecCCCeEEEEEcccCcCCCCCCCCcccccceEEEEeee--eeccCcceeeeeeccCCCCCCCCcccccccCCCCCC
Q 004581          235 RVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSV--RAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKP  312 (744)
Q Consensus       235 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (744)
                      +|+.+-.+.-|.-|+.+....            ..-..+...  .....+|..|++...       .++           
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~------------~~~~~v~~~~g~~l~aDvEGlaly~~-------~~g-----------  270 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGG------------NDRTLVASADGDGLVADVEGLALYYG-------SDG-----------  270 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-------------S--EEEEEBSSSSB-S-EEEEEEEE--------CCC-----------
T ss_pred             CEEEecCccEEEEEecCCCCC------------CcceeeecccccccccCccceEEEec-------CCC-----------
Confidence            999998887777776654321            001112222  235667888887410       111           


Q ss_pred             ccccccccccCCCcEEEEecCCCeEEEEecCc
Q 004581          313 IDFSYHKWAHLGVPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       313 ~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~  344 (744)
                                 .+-+|+|.-.+++..+|+...
T Consensus       271 -----------~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  271 -----------KGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             ------------EEEEEEEGGGTEEEEEESST
T ss_pred             -----------CeEEEEEcCCCCeEEEEecCC
Confidence                       111566666777899999864

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.38  E-value=15  Score=30.31  Aligned_cols=107  Identities=22%  Similarity=0.303  Sum_probs=64.8

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCcc--------eEEEEecCCCCceeEEe---ecCC-CCCeEEEEecCCeEEEEEc
Q 004581          526 MFTSSDGQWLAAVNCFGDVYIFNLEIQR--------QHWFISRLEGASVTAAG---FPPQ-NNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       526 l~~spdg~~las~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~l~---~sp~-~~~~l~~~~~d~~v~vwd~  593 (744)
                      -.|......|++++.-|+|.|++.....        ....+. . +..|++|+   |.|+ +.+.|++|+ ..++..||+
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-i-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-I-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-C-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            3565666688999999999999875332        223332 2 24677775   4332 345555555 567999999


Q ss_pred             CCCccccccccccCCcccccccCCCceEEEEeCCCCC--CcEEEEEcCceEEEEeC
Q 004581          594 EAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPSPS--SSSVIIYSARAMCVIDF  647 (744)
Q Consensus       594 ~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fspdg~--~~~~~~~~~~~~~~~~~  647 (744)
                      +...-.         +   ++...+.+..|.+-.-|.  ...+++-+.-.+.-+|.
T Consensus        81 ~~N~d~---------F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~  124 (136)
T PF14781_consen   81 ENNSDL---------F---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY  124 (136)
T ss_pred             ccCchh---------h---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence            877421         1   334457777777743322  34455555555777775

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.12  E-value=41  Score=35.03  Aligned_cols=32  Identities=13%  Similarity=0.146  Sum_probs=24.1

Q ss_pred             ccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581          221 KGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       221 ~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      -..-..|+|.|||+.|++--..|.|++++...
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~   60 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPET   60 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence            45568899999997666654469999987554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.83  E-value=62  Score=36.77  Aligned_cols=63  Identities=17%  Similarity=0.176  Sum_probs=44.6

Q ss_pred             CeEEEEcCCCCEEEEeCCCcceEEEee---ccccceeEEEEcCCC------CEEEeecCCCeEEEEEcccCc
Q 004581          192 GTLVSADSTGSVQFWDSRHGTLLQAHS---FHKGDVNALAAAPSH------NRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       192 ~~l~s~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~------~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      .+++.+-+.|.+..+.......+..+.   .-...|.|+++.++.      ++++.++.|+.+++..+....
T Consensus       550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d  621 (1205)
T KOG1898|consen  550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSD  621 (1205)
T ss_pred             eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcc
Confidence            367777777887777665433333332   335689999998865      578999999999999988543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.71  E-value=34  Score=33.59  Aligned_cols=124  Identities=15%  Similarity=0.221  Sum_probs=82.2

Q ss_pred             cccEEEEeeCCCEEEEE------------------eCCCcEEEEEccCCceeeeeccCcccccc----------------
Q 004581          469 FAHSMIFSYDSSQLIIA------------------GHDRRIYVVDVSSSELLHTFTPCREEHDR----------------  514 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~~~~~~~~~----------------  514 (744)
                      ....+.+.++|..|++.                  -.|+.+.-.|+++++.+..+.........                
T Consensus        58 d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~  137 (299)
T PF14269_consen   58 DHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSS  137 (299)
T ss_pred             CccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCC
Confidence            45666777888877732                  12445667788889888776542211100                


Q ss_pred             cCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceEEEEecCCCCc----eeEEeecCCCCCeEEEEecCCeEEE
Q 004581          515 EIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS----VTAAGFPPQNNNVLIITTSSNQVYV  590 (744)
Q Consensus       515 ~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~l~~sp~~~~~l~~~~~d~~v~v  590 (744)
                      ..+..--.|+++...++|.+|+++-.-..|.+.|-.+++.++.+.+...+.    -...+|-. |.+++-....++.|.+
T Consensus       138 ~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~Isl  216 (299)
T PF14269_consen  138 SFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISL  216 (299)
T ss_pred             CCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEE
Confidence            011122347888988999999999888999999999999999986542211    12244544 6666666677889999


Q ss_pred             EEc
Q 004581          591 FDV  593 (744)
Q Consensus       591 wd~  593 (744)
                      ||=
T Consensus       217 FDN  219 (299)
T PF14269_consen  217 FDN  219 (299)
T ss_pred             EcC
Confidence            985

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.51  E-value=15  Score=39.35  Aligned_cols=71  Identities=14%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             CceeEEEEEEecCC-eEEEEcCCCCEEEEeCCCcceEEEeeccccceeEEEEcCCCCEEEeecCCCeEEEEEccc
Q 004581          179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       179 ~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      ....+.++.-+|.+ .++++..||.|++|+....+...... ...+-..+.|...|  |+++..|..+.-|.-+.
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg   84 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDG   84 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccC
Confidence            44567778888988 79999999999999986544322221 12334456676555  77888888888887654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.31  E-value=6.5  Score=34.86  Aligned_cols=31  Identities=26%  Similarity=0.267  Sum_probs=25.8

Q ss_pred             cceeEEEEcCCC------CEEEeecCCCeEEEEEccc
Q 004581          222 GDVNALAAAPSH------NRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       222 ~~v~~l~~~~~~------~~l~~~~~dg~i~iw~~~~  252 (744)
                      ..|..++|||.|      -.|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999954      4688889999999998765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=86.23  E-value=66  Score=36.52  Aligned_cols=197  Identities=9%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             cCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceEEEEE---------ecCCCCeEEEEEcCCCCEEEE-EcC--
Q 004581          371 SHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK---------SKASRKIICSTISNSGMLFAY-SDH--  438 (744)
Q Consensus       371 s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~s~~g~~la~-~~~--  438 (744)
                      ...+.+.++.+|.+++|-.....               .+.+..         ...--.-.+++++.+|+.+++ +.+  
T Consensus        61 ~K~A~i~Vt~nG~l~l~yQ~~~~---------------~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~  125 (753)
T PF11635_consen   61 AKSACIAVTRNGLLKLWYQKPDG---------------QWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSL  125 (753)
T ss_pred             CceEEEEEecCCeEEEEEEcCCC---------------ccceeehhhhccccccccceeeceeeecCCCCEEEEEEcccc


Q ss_pred             -CceEEEEeecCCCCCceEEeeeccCCc-------------------------------ccccccEEEEee-------CC
Q 004581          439 -VKPSLFELKKGKVGQGEWIINKRQLPR-------------------------------KLQFAHSMIFSY-------DS  479 (744)
Q Consensus       439 -~~v~l~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~v~~i~~sp-------d~  479 (744)
                       +.|++|.+.-      -|+.+......                               ....++.+.|-+       .-
T Consensus       126 s~~l~~yrv~I------~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p  199 (753)
T PF11635_consen  126 SKQLRFYRVQI------DWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAP  199 (753)
T ss_pred             CCceEEEEEEE------eccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCC


Q ss_pred             CEEEEEeCCC----cEEEEEcc-CCceeeeeccCcccccccCC--------------CCCCceEEEEECCCCCEEEEEeC
Q 004581          480 SQLIIAGHDR----RIYVVDVS-SSELLHTFTPCREEHDREIQ--------------PSEPPITKMFTSSDGQWLAAVNC  540 (744)
Q Consensus       480 ~~l~~~~~dg----~i~v~d~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~~l~~spdg~~las~~~  540 (744)
                      ..|++.+..+    .|.-|.+. ..+.++..-...........              ...+.|.+++...-+.+++.+-.
T Consensus       200 ~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~  279 (753)
T PF11635_consen  200 EILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFS  279 (753)
T ss_pred             eEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEc


Q ss_pred             CCcEEEEECCCcceEEEE----ecCCC--------------CceeEEeecCCCCCeEEEEecCCeEE
Q 004581          541 FGDVYIFNLEIQRQHWFI----SRLEG--------------ASVTAAGFPPQNNNVLIITTSSNQVY  589 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~~~----~~~~~--------------~~v~~l~~sp~~~~~l~~~~~d~~v~  589 (744)
                      ||+|.++|-.+.+.....    .....              ..+..++||| ++..++.-..+|.+.
T Consensus       280 DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  280 DGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQIDEDGKTK  345 (753)
T ss_pred             CCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEEEecCCCce

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.85  E-value=52  Score=34.96  Aligned_cols=111  Identities=18%  Similarity=0.047  Sum_probs=57.2

Q ss_pred             CeEEEEEecCCCceeEeecccCcc-CcEEEEEEecCCCEEEEEe--------------CCCeEEEEEccCCceEEEEEec
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVS-GRVLSVTWSADGNMLYSGS--------------SDGYIRSWDAKLGYEIYRITVG  171 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~dg~~l~t~~--------------~dg~i~vwd~~~~~~~~~~~~~  171 (744)
                      +.++.+|+. |+.+. ...+.+.. .-=..+.+-|+|++|+.+.              .| .|..+| .+|+.+..+...
T Consensus       167 ~~~~e~D~~-G~v~~-~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~wd~~  242 (477)
T PF05935_consen  167 NRLYEIDLL-GKVIW-EYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWEWDFF  242 (477)
T ss_dssp             TEEEEE-TT---EEE-EEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEEEEGG
T ss_pred             CceEEEcCC-CCEEE-eeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEEEehH
Confidence            677788875 44322 23333311 1123466789999988877              23 577778 888888776532


Q ss_pred             C--CC--C---------------CCCCceeEEEEEEec-CC-eEEEEcCCCCEEEEeCCCcceEEEeeccc
Q 004581          172 L--GG--L---------------GSGPELCIWSLLSLR-CG-TLVSADSTGSVQFWDSRHGTLLQAHSFHK  221 (744)
Q Consensus       172 ~--~~--~---------------~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~  221 (744)
                      .  ..  .               ....=..+.++.+.+ ++ .++|+-....|...|.++++....+..|.
T Consensus       243 d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  243 DHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             GTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             HhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            1  00  0               001114678889988 45 55555556688888988888887776554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.24  E-value=45  Score=33.67  Aligned_cols=189  Identities=16%  Similarity=0.168  Sum_probs=106.7

Q ss_pred             CCeeEEecCCCeEEEEEccCCceeEEeeccCcceeEEeecc----CCCccccccccccccCCccccCCCCCCCCCcCccC
Q 004581            5 GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAP----SNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSES   80 (744)
Q Consensus         5 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (744)
                      ..+++....++-+.+||+ .|+.++.+.  .+..+.+.+--    .|+.+                              
T Consensus        68 kSlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~v------------------------------  114 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTV------------------------------  114 (381)
T ss_dssp             G-EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEE------------------------------
T ss_pred             cceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceE------------------------------
Confidence            346777778889999997 557777664  34555544432    23211                              


Q ss_pred             CCCCCcccccccccccCCeEEEEec-C---CeEEEEEecC-CCceeEeec----ccCccCcEEEEEEe--c-CCC-EEEE
Q 004581           81 ENDSDSDELHEQSVVEDRRVALACD-D---GCVRIYRITD-SDELIYHRS----LPRVSGRVLSVTWS--A-DGN-MLYS  147 (744)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~la~~~~-d---g~i~iwd~~~-~~~~~~~~~----~~~h~~~V~~~~~s--~-dg~-~l~t  147 (744)
                                        -||+++. +   ..|++|.+.. ...+.....    +..-...+..+|+-  + +|. +++.
T Consensus       115 ------------------Dlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v  176 (381)
T PF02333_consen  115 ------------------DLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFV  176 (381)
T ss_dssp             ------------------EEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEE
T ss_pred             ------------------EEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEE
Confidence                              2444443 2   5799999973 233422111    11112346777763  3 455 5556


Q ss_pred             EeCCCeEEEEEcc---CC----ceEEEEEecCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC-----cceE
Q 004581          148 GSSDGYIRSWDAK---LG----YEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-----GTLL  214 (744)
Q Consensus       148 ~~~dg~i~vwd~~---~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~-----~~~~  214 (744)
                      ...+|.+..|.+.   .|    +.++++..         ...+..+...... +|+.+-++.-|.-|+.+.     ++.+
T Consensus       177 ~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v  247 (381)
T PF02333_consen  177 NGKDGRVEQYELTDDGDGKVSATLVREFKV---------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLV  247 (381)
T ss_dssp             EETTSEEEEEEEEE-TTSSEEEEEEEEEE----------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEE
T ss_pred             ecCCceEEEEEEEeCCCCcEeeEEEEEecC---------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceee
Confidence            7778988888774   23    35666663         3466677666654 899999998888888762     2333


Q ss_pred             EEeec--cccceeEEEEcC--CC-CEEEe-ecCCCeEEEEEcccC
Q 004581          215 QAHSF--HKGDVNALAAAP--SH-NRVFS-TGSDGQVILYKASCE  253 (744)
Q Consensus       215 ~~~~~--h~~~v~~l~~~~--~~-~~l~~-~~~dg~i~iw~~~~~  253 (744)
                      ....+  ....|-.|++-.  ++ .+|++ .-.+++..+|+....
T Consensus       248 ~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  248 ASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            33322  356788888743  33 34554 444889999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=84.72  E-value=88  Score=36.61  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             cccEEEEeeCCCEEEEEeCCCcEE-EEEccCCceeeeeccCccc---------------ccccCCCCCCceEEEEECCCC
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIY-VVDVSSSELLHTFTPCREE---------------HDREIQPSEPPITKMFTSSDG  532 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~-v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~l~~spdg  532 (744)
                      ...+|+++++|.+.++-+....|. |-.+.+...+..+.+....               .--...+|-..+.++|.+|||
T Consensus       594 ~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg  673 (1899)
T KOG4659|consen  594 IQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDG  673 (1899)
T ss_pred             hhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCC
Confidence            447889999888766654432221 1112222233333321100               000123566778899999999


Q ss_pred             CEEEEE
Q 004581          533 QWLAAV  538 (744)
Q Consensus       533 ~~las~  538 (744)
                      ...++-
T Consensus       674 ~v~IAD  679 (1899)
T KOG4659|consen  674 DVIIAD  679 (1899)
T ss_pred             cEEEec
Confidence            876654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.19  E-value=48  Score=33.11  Aligned_cols=107  Identities=10%  Similarity=0.048  Sum_probs=49.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCCceE--EEEEecCCCCCCCCceeEEEEEEecCCeEEEEcC-----CCCEEEEeC
Q 004581          141 DGNMLYSGSSD-----GYIRSWDAKLGYEI--YRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS-----TGSVQFWDS  208 (744)
Q Consensus       141 dg~~l~t~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~-----dg~i~vwd~  208 (744)
                      ++.+++.|+.+     ..+..+|+.+.+-.  .....++.     ....-.+++...+..++.|+.     ...+..||+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-----~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~  146 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLP-----FTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL  146 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCC-----cCccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence            55666777654     35677777665531  11111110     111111222333334555553     245888898


Q ss_pred             CCcceEEEeecc-ccceeEEEEcCCCCEEEeecCCCe----EEEEEccc
Q 004581          209 RHGTLLQAHSFH-KGDVNALAAAPSHNRVFSTGSDGQ----VILYKASC  252 (744)
Q Consensus       209 ~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~~~~~dg~----i~iw~~~~  252 (744)
                      .+.+....-... .......+...+++..+.|+.++.    +..||..+
T Consensus       147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence            876543221111 112222223335666667776542    34566554

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.15  E-value=42  Score=32.43  Aligned_cols=97  Identities=12%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEe------CCCcEEEEECCCcceEEEEecCC
Q 004581          489 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN------CFGDVYIFNLEIQRQHWFISRLE  562 (744)
Q Consensus       489 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~------~dg~i~iwd~~~~~~~~~~~~~~  562 (744)
                      ..|++||..+.+-...-.+           -.+.|++|.|..+.+.++.|.      ....+..||+++..-. .+....
T Consensus        16 ~~lC~yd~~~~qW~~~g~~-----------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~   83 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNG-----------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGS   83 (281)
T ss_pred             CEEEEEECCCCEeecCCCC-----------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcc
Confidence            3589999876655443333           577899999997878888775      3457889999877532 232211


Q ss_pred             ----CCceeEEeecCCCCCeEE-EEe-cCCeEEEEEcCCCc
Q 004581          563 ----GASVTAAGFPPQNNNVLI-ITT-SSNQVYVFDVEAKQ  597 (744)
Q Consensus       563 ----~~~v~~l~~sp~~~~~l~-~~~-~d~~v~vwd~~~~~  597 (744)
                          .++|+.+.+...|...+. .|. .++.-++...+..+
T Consensus        84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence                267888888553554444 333 44544444445544

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.07  E-value=16  Score=37.56  Aligned_cols=85  Identities=15%  Similarity=0.029  Sum_probs=56.7

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEE---------ccCCceEEEEEec-C--CCCCCCCceeEEEEEEecCC----eEE
Q 004581          132 RVLSVTWSADGNMLYSGSSDGYIRSWD---------AKLGYEIYRITVG-L--GGLGSGPELCIWSLLSLRCG----TLV  195 (744)
Q Consensus       132 ~V~~~~~s~dg~~l~t~~~dg~i~vwd---------~~~~~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~----~l~  195 (744)
                      .|..+..++.|..++-++.+|.+.++=         ++.|+..-..+.- .  .-..+...-.+..++|+|+.    .|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            477888899999999999998766542         2445433322211 1  11112234456678899976    788


Q ss_pred             EEcCCCCEEEEeCCCcceEEE
Q 004581          196 SADSTGSVQFWDSRHGTLLQA  216 (744)
Q Consensus       196 s~~~dg~i~vwd~~~~~~~~~  216 (744)
                      .-.+|+.|++||....+.+..
T Consensus       185 iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             EEecCcEEEEEecCCcchhhc
Confidence            888999999999987665533

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.02  E-value=55  Score=33.72  Aligned_cols=292  Identities=10%  Similarity=0.055  Sum_probs=137.0

Q ss_pred             eEEEEcCCCCEEEEeCCCcc-----eEEEeeccccceeEEEEcC-----CCCEEEeecCCCeEEEEEcccCcCCCCCCCC
Q 004581          193 TLVSADSTGSVQFWDSRHGT-----LLQAHSFHKGDVNALAAAP-----SHNRVFSTGSDGQVILYKASCESIGPNDGLS  262 (744)
Q Consensus       193 ~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  262 (744)
                      .|+.|+..|.++||+...+.     .+-+.+ -..+|..+....     +...|++ =.-..+.+|.+......      
T Consensus        39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~------  110 (418)
T PF14727_consen   39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT------  110 (418)
T ss_pred             EEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC------
Confidence            89999999999999986533     222222 256888887643     2234444 35677888888443210      


Q ss_pred             cccccceEEEEeeeeeccCc--ceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEEecCCCeEEEE
Q 004581          263 SSEVIKKWIYVGSVRAHTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY  340 (744)
Q Consensus       263 ~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~  340 (744)
                       ......+. +.....|.-.  ...+++-         +=|.                   ..+.+.+..-+.||.+.+|
T Consensus       111 -~~~g~~~~-L~~~yeh~l~~~a~nm~~G---------~Fgg-------------------~~~~~~IcVQS~DG~L~~f  160 (418)
T PF14727_consen  111 -VEHGNQYQ-LELIYEHSLQRTAYNMCCG---------PFGG-------------------VKGRDFICVQSMDGSLSFF  160 (418)
T ss_pred             -cccCcEEE-EEEEEEEecccceeEEEEE---------ECCC-------------------CCCceEEEEEecCceEEEE
Confidence             01112222 2333333322  2223221         1111                   1123589999999999999


Q ss_pred             ecCccCCCCCcccCCCCCCCccccccceeecCCe--EEEEEeCCeEEEEEeeccCCcccCCC--------CCCCCCcceE
Q 004581          341 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTS--LLLVQYSCRLDILSVRLENNVESRSS--------SGGHASTSLL  410 (744)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~i~i~~~~~~~~~~~~~~--------~~~~~~~~~~  410 (744)
                      +-+...-.......        -....+.+.+..  .++++.+..+..|+...-........        ....+....-
T Consensus       161 eqe~~~f~~~lp~~--------llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~d  232 (418)
T PF14727_consen  161 EQESFAFSRFLPDF--------LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPD  232 (418)
T ss_pred             eCCcEEEEEEcCCC--------CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccce
Confidence            98764311111111        111133444433  33333344677776543222211100        0011112222


Q ss_pred             EEEEecCCCCeEEE---EEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEee----CC---C
Q 004581          411 VQVKSKASRKIICS---TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSY----DS---S  480 (744)
Q Consensus       411 ~~~~~~~~~~i~~~---~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~sp----d~---~  480 (744)
                      ..+..+  +.+..+   .++..-..+++=....+.+.+.    .+...| .++.+..    +.+...|..    ++   .
T Consensus       233 Ws~nlG--E~~l~i~v~~~~~~~~~IvvLger~Lf~l~~----~G~l~~-~krLd~~----p~~~~~Y~~~~~~~~~~~~  301 (418)
T PF14727_consen  233 WSFNLG--EQALDIQVVRFSSSESDIVVLGERSLFCLKD----NGSLRF-QKRLDYN----PSCFCPYRVPWYNEPSTRL  301 (418)
T ss_pred             eEEECC--ceeEEEEEEEcCCCCceEEEEecceEEEEcC----CCeEEE-EEecCCc----eeeEEEEEeecccCCCCce
Confidence            233322  223322   2332333343333334444332    122111 1111111    222222221    22   2


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCce--EEEEECCCCCEEEEEeCCCcEEEEECCCcce
Q 004581          481 QLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI--TKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQ  554 (744)
Q Consensus       481 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~spdg~~las~~~dg~i~iwd~~~~~~  554 (744)
                      .+++++.++++.||.  +.+++..-..           ...+|  .-..|..-...|++-+.+|.+.+--+-|...
T Consensus       302 ~llV~t~t~~LlVy~--d~~L~WsA~l-----------~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  302 NLLVGTHTGTLLVYE--DTTLVWSAQL-----------PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             EEEEEecCCeEEEEe--CCeEEEecCC-----------CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence            488889999999997  3444444332           12222  2223333445788888899888877766543

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=83.85  E-value=68  Score=34.62  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             cccEEEEeeCCCEEEEEeC-----CCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCC-
Q 004581          469 FAHSMIFSYDSSQLIIAGH-----DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG-  542 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg-  542 (744)
                      .+-.++.|||.+++|.+-.     .=++++.|+.+|+.+....             .+....++|.+|++.|.-...|- 
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-------------~~~~~~~~Wa~d~~~lfYt~~d~~  196 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-------------TNTSGSFAWAADGKTLFYTRLDEN  196 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-------------cccccceEEecCCCeEEEEEEcCC
Confidence            5667888999999987633     2378999999887654322             33466889999999887665443 


Q ss_pred             ----cEEEEECCC--cceEEEEecCCCCceeEEeecCCCCCeEEEEecC---CeEEEEEcCCCcccc
Q 004581          543 ----DVYIFNLEI--QRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS---NQVYVFDVEAKQLGE  600 (744)
Q Consensus       543 ----~i~iwd~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~~d---~~v~vwd~~~~~~~~  600 (744)
                          .|.-..+.+  ......+......--.++.=+. +.++|+....|   +.+++.+.+..+.++
T Consensus       197 ~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~-s~~yi~i~~~~~~tsE~~ll~a~~p~~~p  262 (682)
T COG1770         197 HRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSR-SEAYIVISLGSHITSEVRLLDADDPEAEP  262 (682)
T ss_pred             CCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeecc-CCceEEEEcCCCcceeEEEEecCCCCCce
Confidence                233333443  2222222211112223333344 56777766544   377777877766543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.79  E-value=9.6  Score=33.79  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=26.8

Q ss_pred             CceeEEeecC-----CCCCeEEEEecCCeEEEEEcCCC
Q 004581          564 ASVTAAGFPP-----QNNNVLIITTSSNQVYVFDVEAK  596 (744)
Q Consensus       564 ~~v~~l~~sp-----~~~~~l~~~~~d~~v~vwd~~~~  596 (744)
                      ..+.+++|||     ..+.+|++.+.++.|.||.-...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            4789999999     22467899999999999987644

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.04  E-value=5.1  Score=24.72  Aligned_cols=29  Identities=21%  Similarity=0.160  Sum_probs=20.3

Q ss_pred             CCCceEEEEECCCCCEEEEEeC-C--CcEEEE
Q 004581          519 SEPPITKMFTSSDGQWLAAVNC-F--GDVYIF  547 (744)
Q Consensus       519 ~~~~i~~l~~spdg~~las~~~-d--g~i~iw  547 (744)
                      ....-....|||||++|+.++. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4556788999999999887654 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=82.69  E-value=55  Score=32.68  Aligned_cols=111  Identities=13%  Similarity=0.064  Sum_probs=51.0

Q ss_pred             ccCCeEEEEecC-----CeEEEEEecCCCc---eeEeecccCccCcEEEEEEecCCCEEEEEeC-----CCeEEEEEccC
Q 004581           95 VEDRRVALACDD-----GCVRIYRITDSDE---LIYHRSLPRVSGRVLSVTWSADGNMLYSGSS-----DGYIRSWDAKL  161 (744)
Q Consensus        95 ~~~~~la~~~~d-----g~i~iwd~~~~~~---~~~~~~~~~h~~~V~~~~~s~dg~~l~t~~~-----dg~i~vwd~~~  161 (744)
                      .++.+++.|+.+     ..+..+|+.+...   ......+....... +++. -++++.+.|+.     ...+.+||+.+
T Consensus        71 ~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~  148 (323)
T TIGR03548        71 VENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLET  148 (323)
T ss_pred             ECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCC
Confidence            355667777754     3566677764432   11112222111111 2222 25666676664     23688888876


Q ss_pred             CceEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCC----CEEEEeCCCcce
Q 004581          162 GYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTG----SVQFWDSRHGTL  213 (744)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~  213 (744)
                      .+-...-..+      .....-.+++...+..++.|+.++    .+.+||.++.+.
T Consensus       149 ~~W~~~~~~p------~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       149 QEWFELPDFP------GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCeeECCCCC------CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            5432211100      001111112222233566666553    356888887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.81  E-value=24  Score=36.20  Aligned_cols=144  Identities=12%  Similarity=0.030  Sum_probs=81.8

Q ss_pred             EEecCCCeEEEEEccCCceeEEeeccCcceeEEeeccCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccc
Q 004581            9 FSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDE   88 (744)
Q Consensus         9 ~~~~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (744)
                      ..++....+.--|++.|+.+.....|..-  -+.|.|+.+.--                                     
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~q-------------------------------------  524 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQ-------------------------------------  524 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHh-------------------------------------
Confidence            44555667777788888888888776654  577888764220                                     


Q ss_pred             ccccccccCCeEEEEecCCeEEEEEec-CCCceeEeecccCccCcEEEEEEe----cCCCEEEEEeCCCeEEEEEccCCc
Q 004581           89 LHEQSVVEDRRVALACDDGCVRIYRIT-DSDELIYHRSLPRVSGRVLSVTWS----ADGNMLYSGSSDGYIRSWDAKLGY  163 (744)
Q Consensus        89 ~~~~~~~~~~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~V~~~~~s----~dg~~l~t~~~dg~i~vwd~~~~~  163 (744)
                           ..+.+.| +|-.+..|.-.|.. .+..+....    ....++--.||    ....++|.|+..|.|++||--.-+
T Consensus       525 -----mt~eqtl-vGlS~~svFrIDPR~~gNKi~v~e----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r  594 (776)
T COG5167         525 -----MTDEQTL-VGLSDYSVFRIDPRARGNKIKVVE----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR  594 (776)
T ss_pred             -----cCccceE-EeecccceEEecccccCCceeeee----ehhccccccccccccccCceEEEecCCCceeeehhhcch
Confidence                 0111234 44444555444544 232222111    11122222232    244589999999999999964333


Q ss_pred             eEEEEEecCCCCCCCCceeEEEEEEecCCeEEEEcCCCCEEEEeCC
Q 004581          164 EIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSR  209 (744)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~vwd~~  209 (744)
                      ....++        +....|..+..+.+|..+.+.....+.+-|+.
T Consensus       595 AKtalP--------~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         595 AKTALP--------GLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             hhhcCc--------ccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            333333        56677888888889933333334556666654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=81.52  E-value=52  Score=31.68  Aligned_cols=248  Identities=12%  Similarity=0.087  Sum_probs=0.0

Q ss_pred             EEEEEecCC-eEEEEcCCCCEEEEeCC-------CcceEEEeecccc-----ceeEEEEcCCCCEEEeecCCCeEEEEEc
Q 004581          184 WSLLSLRCG-TLVSADSTGSVQFWDSR-------HGTLLQAHSFHKG-----DVNALAAAPSHNRVFSTGSDGQVILYKA  250 (744)
Q Consensus       184 ~~~~~~~~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~~~~~dg~i~iw~~  250 (744)
                      |.|+++|.+ ..++....+...+||..       ...++-++.....     ..+.+.|+....+.+++...        
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~--------   97 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI--------   97 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc--------


Q ss_pred             ccCcCCCCCCCCcccccceEEEEeeeeeccCcceeeeeeccCCCCCCCCcccccccCCCCCCccccccccccCCCcEEEE
Q 004581          251 SCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS  330 (744)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s  330 (744)
                      ....                                                                        .++.
T Consensus        98 ~~~a------------------------------------------------------------------------~Fif  105 (336)
T TIGR03118        98 TGPS------------------------------------------------------------------------RFLF  105 (336)
T ss_pred             ccce------------------------------------------------------------------------eEEE


Q ss_pred             ecCCCeEEEEecCccCCCCCcccCCCCCCCccccccceeecCCeEEEEEeCCeEEEEEeeccCCcccCCCCCCCCCcceE
Q 004581          331 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL  410 (744)
Q Consensus       331 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  410 (744)
                      +++||+|.-|...-........                                                        .+
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~--------------------------------------------------------~~  129 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRA--------------------------------------------------------EI  129 (336)
T ss_pred             EeCCceEEeecCcCCccccccc--------------------------------------------------------EE


Q ss_pred             EEEEecCCCCeEEEEEcCC--CCEEEEE--cCCceEEEEeecCCCCCceEEeeeccCCcccc------------------
Q 004581          411 VQVKSKASRKIICSTISNS--GMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQ------------------  468 (744)
Q Consensus       411 ~~~~~~~~~~i~~~~~s~~--g~~la~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------  468 (744)
                      .--......--..+++...  +.+|..+  ..++|.+|+-.          .....+.+...                  
T Consensus       130 ~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----------f~~~~~~g~F~DP~iPagyAPFnIqnig~  199 (336)
T TIGR03118       130 VVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----------FRPPPLPGSFIDPALPAGYAPFNVQNLGG  199 (336)
T ss_pred             EEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc----------cccccCCCCccCCCCCCCCCCcceEEECC


Q ss_pred             --cccEEEEeeCCCEEEEEeCCCcEEEEEccCCceeeeeccCcccccccCCCCCCceEEEEECC------CCCEEEEEeC
Q 004581          469 --FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS------DGQWLAAVNC  540 (744)
Q Consensus       469 --~v~~i~~spd~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------dg~~las~~~  540 (744)
                        .|+-..-.++.+.=+.|..-|.|-+||+. |++++.+..         ...-..-+.|+..|      .|.+|+---.
T Consensus       200 ~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as---------~g~LNaPWG~a~APa~FG~~sg~lLVGNFG  269 (336)
T TIGR03118       200 TLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVAS---------SGRLNAPWGLAIAPESFGSLSGALLVGNFG  269 (336)
T ss_pred             eEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEecc---------CCcccCCceeeeChhhhCCCCCCeEEeecC


Q ss_pred             CCcEEEEECCCcceEEEEecCCC-----CceeEEeecC-----CCCCeEEEEecCCe
Q 004581          541 FGDVYIFNLEIQRQHWFISRLEG-----ASVTAAGFPP-----QNNNVLIITTSSNQ  587 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~l~~sp-----~~~~~l~~~~~d~~  587 (744)
                      ||+|..||..+++..-.+....+     ...+.|+|..     ....+.++++.+..
T Consensus       270 DG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~de  326 (336)
T TIGR03118       270 DGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDDE  326 (336)
T ss_pred             CceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCCc

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=81.27  E-value=17  Score=34.10  Aligned_cols=31  Identities=10%  Similarity=-0.038  Sum_probs=23.6

Q ss_pred             ccccceeecCCeEEEEEeCCeEEEEEeeccC
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLEN  393 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~i~i~~~~~~~  393 (744)
                      ..-..+...|+|++++.+...-.|++.....
T Consensus       170 nlYP~~~llPdG~lFi~an~~s~i~d~~~n~  200 (243)
T PF07250_consen  170 NLYPFVHLLPDGNLFIFANRGSIIYDYKTNT  200 (243)
T ss_pred             ccCceEEEcCCCCEEEEEcCCcEEEeCCCCe
Confidence            4444667789999999988888888877654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=81.17  E-value=14  Score=28.26  Aligned_cols=41  Identities=7%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             CCCcEEEEECCCcceEEEEecCCCCceeEEeecCCCCCeEEEEe
Q 004581          540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT  583 (744)
Q Consensus       540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l~~~~  583 (744)
                      .+|.+.-||..+++....+.+.+  -.+.+++++ |+++|+++-
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~--fpNGVals~-d~~~vlv~E   75 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLY--FPNGVALSP-DESFVLVAE   75 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEES--SEEEEEE-T-TSSEEEEEE
T ss_pred             CCcCEEEEECCCCeEEEehhCCC--ccCeEEEcC-CCCEEEEEe
Confidence            35889999999998777776654  789999999 988777764

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.00  E-value=17  Score=41.99  Aligned_cols=153  Identities=14%  Similarity=0.214  Sum_probs=89.1

Q ss_pred             cCCCeEEEEEccCCceeEEeeccCcceeEEeec-cCCCccccccccccccCCccccCCCCCCCCCcCccCCCCCCccccc
Q 004581           12 SIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVA-PSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELH   90 (744)
Q Consensus        12 ~~d~~i~iwd~~~~~~~~~~~~h~~~i~~v~~s-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (744)
                      +.|+.+.+|+.+++.....+.+....|-.|..- |.-..++                                       
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv---------------------------------------  136 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFV---------------------------------------  136 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcch---------------------------------------
Confidence            568999999999988888899888888887754 3221110                                       


Q ss_pred             ccccccCCeEEEEecCCeEEEEEecCC----CceeEeec--ccCccCcEEEEEEecCCCEEEEEeCCCeEEEEEc----c
Q 004581           91 EQSVVEDRRVALACDDGCVRIYRITDS----DELIYHRS--LPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDA----K  160 (744)
Q Consensus        91 ~~~~~~~~~la~~~~dg~i~iwd~~~~----~~~~~~~~--~~~h~~~V~~~~~s~dg~~l~t~~~dg~i~vwd~----~  160 (744)
                          +.=++|.+-..--.|.|+-+.-.    +.-.+...  +.-..-.|+|+....+|+.+.+| .||  .+|.+    +
T Consensus       137 ----~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~  209 (1311)
T KOG1900|consen  137 ----PEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAE  209 (1311)
T ss_pred             ----hhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEecc
Confidence                00023333333356777766522    21111111  11224578999988888877665 455  45543    2


Q ss_pred             CC---c-eEEEEEe---------cCCCCCCCCceeEEEEEEecCC-eEEEEcCCCCEEEEeCCC
Q 004581          161 LG---Y-EIYRITV---------GLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH  210 (744)
Q Consensus       161 ~~---~-~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~vwd~~~  210 (744)
                      .|   + +......         ..-.....+..+|..+...... .+.+-++.|+|.+||+..
T Consensus       210 ~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  210 DGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            21   1 1100000         0000112456788888887655 678889999999999975

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=80.29  E-value=53  Score=30.99  Aligned_cols=163  Identities=9%  Similarity=0.018  Sum_probs=95.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEEeecCCCCCceEEeeeccCCcccccccEEEEeeCCCEEEEEeCCCcEEEEEccC
Q 004581          419 RKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS  498 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~v~d~~~  498 (744)
                      .+.....|.+.|.+-.++..+.--  +++.....+++|...      .......|+..|||...++.-.+..|-..|..+
T Consensus       148 ~nlet~vfD~~G~lWFt~q~G~yG--rLdPa~~~i~vfpaP------qG~gpyGi~atpdGsvwyaslagnaiaridp~~  219 (353)
T COG4257         148 ANLETAVFDPWGNLWFTGQIGAYG--RLDPARNVISVFPAP------QGGGPYGICATPDGSVWYASLAGNAIARIDPFA  219 (353)
T ss_pred             CcccceeeCCCccEEEeeccccce--ecCcccCceeeeccC------CCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence            556677788888776665433211  222111223333222      122567888899999888877777788778766


Q ss_pred             CceeeeeccCcccccccCCCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCcceE-EEEecCCCCceeEEeecCCCCC
Q 004581          499 SELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQH-WFISRLEGASVTAAGFPPQNNN  577 (744)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~  577 (744)
                      +.. ..+....        .....-..+--+|.|+.-++....+.++.||-.+..-. +.++.. +....++-... .+.
T Consensus       220 ~~a-ev~p~P~--------~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~-~gr  288 (353)
T COG4257         220 GHA-EVVPQPN--------ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDR-HGR  288 (353)
T ss_pred             CCc-ceecCCC--------cccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeecc-CCc
Confidence            622 2222210        01333455666788888888878888888887765422 233332 24556666654 444


Q ss_pred             eEEEEecCCeEEEEEcCCCcccc
Q 004581          578 VLIITTSSNQVYVFDVEAKQLGE  600 (744)
Q Consensus       578 ~l~~~~~d~~v~vwd~~~~~~~~  600 (744)
                      .-.+--..|.|.-||-++.+++.
T Consensus       289 VW~sea~agai~rfdpeta~ftv  311 (353)
T COG4257         289 VWLSEADAGAIGRFDPETARFTV  311 (353)
T ss_pred             EEeeccccCceeecCcccceEEE
Confidence            44444445677778877776543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.29  E-value=5.7  Score=24.47  Aligned_cols=30  Identities=30%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             CccCcEEEEEEecCCCEEEEEeC-C--CeEEEE
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSS-D--GYIRSW  157 (744)
Q Consensus       128 ~h~~~V~~~~~s~dg~~l~t~~~-d--g~i~vw  157 (744)
                      ...+.-.+.+|||||+.|+-++. +  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34556788999999998887664 3  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	744
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 96  EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
           + RRV     D  V+++   D +      +L   + RV S+ +  DG  + SGS D  IR
Sbjct: 248 DGRRVVSGAYDFMVKVW---DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302
Query: 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL-- 213
            WD + G  I+ +T G   L SG E        L+   LVS ++  +V+ WD + G    
Sbjct: 303 VWDVETGNCIHTLT-GHQSLTSGME--------LKDNILVSGNADSTVKIWDIKTGQCLQ 353
Query: 214 -LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
            LQ  + H+  V  L    + N V ++  DG V L+
Sbjct: 354 TLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW 387

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 96  EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIR 155
           + + +A A DD  V+++    + +L+  ++L   S  V  V +S DG  + S S D  ++
Sbjct: 273 DGQTIASASDDKTVKLWN--RNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 156 SWDAKLGYEIYRITVGLGGLGSGPELCIWSL-LSLRCGTLVSADSTGSVQFWDSRHGTLL 214
            W+ + G  +  +T        G    +W +  S    T+ SA    +V+ W+ R+G LL
Sbjct: 329 LWN-RNGQHLQTLT--------GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 378
Query: 215 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSS 264
           Q  + H   V  +A +P    + S   D  V L+  + + +    G SSS
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 428

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 106 DGCVRIYRITDSDE--LIYHRSLPRV--SGRVLSVTWSADGNMLYSGSSDGYIRSWD-AK 160
           DG + +Y   D  +  +    SL  V  SG V  +TWS DG  + S S+D  I+ W+ A 
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Query: 161 LGYEIYRITVGLGGLGSGPEL-CIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSF 219
           L  E    T+ +G      +L  IW+  +     LVS  + G + F +   G++ Q    
Sbjct: 271 LKVE---KTIPVGTRIEDQQLGIIWTKQA-----LVSISANGFINFVNPELGSIDQVRYG 322
Query: 220 HKGDVNALAAAPSHNRVFSTGSDGQV 245
           H   + AL+++     +FS  ++G +
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHI 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	744
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 35/281 (12%), Positives = 76/281 (27%), Gaps = 45/281 (16%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
              L S+S DG +  WD Y   +   +      +   A APS + +     ++       
Sbjct: 67  SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126

Query: 65  LNDKSNDSDDHETS-------------------------------------ESENDSDSD 87
              + N     E +                                      +      D
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186

Query: 88  ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYS 147
            +      + R       D   +++ + +       ++       + ++ +  +GN   +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFPNGNAFAT 243

Query: 148 GSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWD 207
           GS D   R +D +   E+   +      G           S     L++     +   WD
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 208 SRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
           +         + H   V+ L        V +   D  + ++
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 5e-11
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 9/150 (6%)

Query: 9   FSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 68
            S + D S   WD+ +   +      +  I  +   P+ ++   A  + D     +    
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRA 257

Query: 69  SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPR 128
             +   +          S    +      R +    DD    ++    +D       L  
Sbjct: 258 DQELMTYSHDNIICGITSVSFSK----SGRLLLAGYDDFNCNVWDALKADRA---GVLAG 310

Query: 129 VSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
              RV  +  + DG  + +GS D +++ W+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 98  RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157
              A   DD   R++ +    EL+ +     + G + SV++S  G +L +G  D     W
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 158 DAKLGYEIYRITVGLGGLGSGPELCIWSL-LSLRCGTLVSADSTGSVQFWD 207
           DA        +         G +  +  L ++     + +      ++ W+
Sbjct: 298 DALKADRAGVLA--------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 37/329 (11%), Positives = 82/329 (24%), Gaps = 42/329 (12%)

Query: 220 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 279
           H   + A+        + S   DG++I++          + + +  +   W+   +    
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWD-----SYTTNKVHAIPLRSSWVMTCAYAPS 108

Query: 280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA 339
            + V    +    S  +    +   R                 L    ++++  DT    
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168

Query: 340 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRS 399
           +      + +                   +F          S   D  S +L +      
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLF---------VSGACDA-SAKLWD------ 212

Query: 400 SSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIIN 459
                    +  Q  +     I       +G  FA             +       +  +
Sbjct: 213 -----VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 460 KRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS 519
                       S+ FS     L+    D    V D   ++           HD      
Sbjct: 268 NIICG-----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG----HDN----- 313

Query: 520 EPPITKMFTSSDGQWLAAVNCFGDVYIFN 548
              ++ +  + DG  +A  +    + I+N
Sbjct: 314 --RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 195 VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC 252
           VS     S + WD R G   Q  + H+ D+NA+   P+ N   +   D    L+    
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 20/159 (12%), Positives = 38/159 (23%), Gaps = 24/159 (15%)

Query: 471 HSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSS 530
            S+  + D+   +    D    + DV       TFT     H+         I  +    
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----GHES-------DINAICFFP 236

Query: 531 DGQWLAAVNCFGDVYI-FNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVY 589
           +G   A  +      +      Q    +        +T+  F   +  +L+         
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCN 295

Query: 590 VFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSPS 628
           V+D                           V  L  +  
Sbjct: 296 VWDAL-----------KADRAGVLAGHDNRVSCLGVTDD 323

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 6e-13
 Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 15/256 (5%)

Query: 9   FSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDK 68
           FS       +  +   ++   +       I Q       S       +    G+G    +
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188

Query: 69  SNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL----IYHR 124
             D    + S + +  D       S  + + +A    D  VR++       +      + 
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248

Query: 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG----LGSGPE 180
           S       V SV ++ DG  + SGS D  ++ W+ +             G       G +
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 181 LCIWSL-LSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA------PSH 233
             + S+  +     ++S      V FWD + G  L     H+  V ++A A      P +
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 234 NRVFSTGSDGQVILYK 249
           N   +   D +  ++K
Sbjct: 369 NVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 9e-08
 Identities = 43/268 (16%), Positives = 84/268 (31%), Gaps = 21/268 (7%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMH-------AVTN 56
             G   ++  + +   + + D      L     +        ++SS            + 
Sbjct: 72  NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 57  SDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITD 116
                     D+     D E  +        E    S+               R  RI D
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 117 SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLG 176
                   +L    G         DG  + +GS D  +R WD++ G+ + R+        
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG- 250

Query: 177 SGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHG------------TLLQAHSFHKGD 223
           +G +  ++S++  R G ++VS     SV+ W+ ++             T    +  HK  
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 224 VNALAAAPSHNRVFSTGSDGQVILYKAS 251
           V ++A   +   + S   D  V+ +   
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 37/373 (9%), Positives = 91/373 (24%), Gaps = 25/373 (6%)

Query: 190 RCGTLVSADSTGSVQFWDSRHGTL----LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQV 245
                +   +      ++          L     H   V  +  +       +TG +   
Sbjct: 27  SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND-GEYLATGCNKTT 85

Query: 246 ILYK-ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVK 304
            +Y+ +    +      S++    + +   S  +    +R++          P  +    
Sbjct: 86  QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-------SPDGKFLAT 138

Query: 305 RSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL 364
            +  R   I    ++   + +            F       +      +     R     
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 198

Query: 365 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA--SRKII 422
           +  +I    + + V       I +  L+  V    S  G     L  + +S       + 
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258

Query: 423 CSTISNSG-MLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMI----FSY 477
               +  G  + + S      L+ L+           N              +     + 
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318

Query: 478 DSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA 537
           +   ++    DR +   D  S   L       + H   +  S           +    A 
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLML----QGHRNSVI-SVAVANGSSLGPEYNVFAT 373

Query: 538 VNCFGDVYIFNLE 550
            +      I+  +
Sbjct: 374 GSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 24/176 (13%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDF-------SIWQMAVAPSNSSLMHAVTN 56
            G  + + S+D +V  WD         L S +        S++ +       S+     +
Sbjct: 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV--VSGS 273

Query: 57  SDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV------EDRRVALACDDGCVR 110
            D     +    +N+  D +T  S     +   H+  V+       D  +     D  V 
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 111 IYRITDSDELIYHRSLPRVSGRVLSV------TWSADGNMLYSGSSDGYIRSWDAK 160
            +     + L     L      V+SV      +   + N+  +GS D   R W  K
Sbjct: 334 FWDKKSGNPL---LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 41/372 (11%), Positives = 94/372 (25%), Gaps = 53/372 (14%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 189
           +  V  V +S DG  L +G  +   + +    G  + R++           L   S  S 
Sbjct: 62  TSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS- 119

Query: 190 RCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249
                                             + ++  +P    + + G++ ++I   
Sbjct: 120 ------------------------------SDLYIRSVCFSPDGKFLAT-GAEDRLIRIW 148

Query: 250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 309
                          + I    Y  S           TV +   R               
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED--- 205

Query: 310 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI 369
                 +    +      + +   D  +  + +         +            V++ +
Sbjct: 206 ----GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261

Query: 370 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS 429
           F+     +V  S    +    L+N   ++S S    S +  V         +  +T  N 
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWNLQNA-NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320

Query: 430 GMLFAYSDHVKPSLFELKKGKV-----GQGEWIINKRQLPRKLQFAHSMIFSYDSSQLII 484
             + + S       ++ K G       G    +I+       +  A+      + +    
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS-------VAVANGSSLGPEYNVFAT 373

Query: 485 AGHDRRIYVVDV 496
              D +  +   
Sbjct: 374 GSGDCKARIWKY 385

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 41/297 (13%), Positives = 89/297 (29%), Gaps = 60/297 (20%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHI---- 60
              + S+S D ++  WD      +  L+    S+  ++   S   L     +        
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88

Query: 61  -----------------------GNGYLNDKSNDS-------DDHETSESENDSDSDELH 90
                                     ++   S D              ++          
Sbjct: 89  QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148

Query: 91  EQSVVEDRRVALACDDGCVRIYRITDSD---ELIYHRSLPR--------------VSGRV 133
            +   +   +A   +D  VR++ +   +   EL  HR +                 +   
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208

Query: 134 LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGT 193
            +      G  L SGS D  I+ WD   G  +  +         G +  +  +L    G 
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--------GHDNWVRGVLFHSGGK 260

Query: 194 -LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249
            ++S     +++ WD ++   ++  + H+  V +L    +   V +   D  V +++
Sbjct: 261 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 9e-08
 Identities = 32/329 (9%), Positives = 86/329 (26%), Gaps = 29/329 (8%)

Query: 220 HKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAH 279
           H+  V  +   P  + + S   D  + ++                   +   +  +++ H
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWD-----------------YETGDFERTLKGH 58

Query: 280 THDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA 339
           T  V+ ++             D   +    +              V  +    +   + +
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 340 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD-ILSVRLENNVESR 398
              ++  K    +     +    H     +        +  SC  D  + V +    E +
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 399 SSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWII 458
           +    H      +    ++S   I     +             S    K  K+      +
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 459 NKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQP 518
               L     +   ++F      ++    D+ + V D  +   + T       H+     
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA----HEH---- 290

Query: 519 SEPPITKMFTSSDGQWLAAVNCFGDVYIF 547
               +T +       ++   +    V ++
Sbjct: 291 ---FVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 53/155 (34%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG 63
           PG  L S S D ++  WD+      + L   D  +  +                      
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG---------------- 259

Query: 64  YLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH 123
                                             + +    DD  +R++   +   +   
Sbjct: 260 ----------------------------------KFILSCADDKTLRVWDYKNKRCM--- 282

Query: 124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
           ++L      V S+ +      + +GS D  ++ W+
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRIT 169
              V  V +    +++ S S D  I+ WD + G     + 
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 98  RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157
            ++A+  ++  V IY     ++ +    L   +G+V  V W+ D N + +  +D     W
Sbjct: 20  TQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

Query: 158 D 158
            
Sbjct: 79  T 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 7/90 (7%), Positives = 25/90 (27%), Gaps = 10/90 (11%)

Query: 122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPEL 181
           YH  L      +    W+ D   +    ++  +  ++      +    +           
Sbjct: 2   YHSFLVE---PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL------KEHNG 52

Query: 182 CIWSL-LSLRCGTLVSADSTGSVQFWDSRH 210
            +  +  +     +V+  +  +   W  + 
Sbjct: 53  QVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 43/346 (12%), Positives = 91/346 (26%), Gaps = 24/346 (6%)

Query: 5   GGRLFSSSIDGSVSEWDLYD--LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGN 62
             ++     +  V  ++       Q   L+  +  +  +  AP ++ +   VT      N
Sbjct: 19  RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI---VTCGTD-RN 74

Query: 63  GYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIY 122
            Y+      +          +  +  +      +   V        +  Y   ++D  + 
Sbjct: 75  AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI-CYFEQENDWWVC 133

Query: 123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELC 182
                 +   VLS+ W  +  +L +GS D   R + A +     R      G        
Sbjct: 134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 193

Query: 183 IWSLLS-----------LRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAP 231
           ++   S                +       +V   D+     +   +     + A+    
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 232 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVP 291
             + + + G D   +L+     +     G  S           S R  T   R   +   
Sbjct: 254 -ESSLVAAGHDCFPVLF-----TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 292 ISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL 337
            S E          S  +      S             + G D  +
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 49/273 (17%), Positives = 83/273 (30%), Gaps = 43/273 (15%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPS------------------ 46
           G R+ S S D ++  W     K    L      +W   +  +                  
Sbjct: 27  GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 86

Query: 47  ----------NSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVE 96
                      S++     +   + +G  +      D                      +
Sbjct: 87  GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 146

Query: 97  DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156
            RRV     D  V+++       L   +            +   DG  + SGS D  IR 
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-----VYSLQFDGIHVVSGSLDTSIRV 201

Query: 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQA 216
           WD + G  I+ +T             + S + L+   LVS ++  +V+ WD + G  LQ 
Sbjct: 202 WDVETGNCIHTLT---------GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 252

Query: 217 HSFHKGDVNALAAAPSHNRVFSTGS-DGQVILY 248
                   +A+     +     T S DG V L+
Sbjct: 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 10/116 (8%)

Query: 97  DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156
           D  +     D  V+I+ I     L   +   +    V       + N + + S DG ++ 
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSSDDGTVKL 284

Query: 157 WDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV---SADST--GSVQFWD 207
           WD K G  I  +     G   G    +W + +     +    S + T    +   D
Sbjct: 285 WDLKTGEFIRNLVTLESGGSGGV---VWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 97  DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156
            +       D  +  +R      +       + S  VLS   S D   + +GS D     
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIF----QSKESSSVLSCDISVDDKYIVTGSGDKKATV 332

Query: 157 WD 158
           ++
Sbjct: 333 YE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 32/275 (11%), Positives = 64/275 (23%), Gaps = 30/275 (10%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDF-----SIWQMAVAPSNSSLMHAVTNSD 58
              R   +   G V  WD+     K  +  +D       I    + P   +L+     S 
Sbjct: 61  NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

Query: 59  HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSD 118
                          +  +S     + +     +                     +    
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180

Query: 119 ELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG---- 174
                 S   +S     +      N + S       +        +I+ +     G    
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240

Query: 175 -------------------LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLL 214
                                   E C+ SL    CG   VS      +  W + +G  +
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 215 QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249
              S     V +   +     + +   D +  +Y+
Sbjct: 301 F-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 34/344 (9%), Positives = 74/344 (21%), Gaps = 45/344 (13%)

Query: 206 WDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSE 265
              RH   +   + H   V A+  +    R   TG  G V ++  S              
Sbjct: 37  GIPRHARQINTLN-HGEVVCAVTISNP-TRHVYTGGKGCVKVWDIS------------HP 82

Query: 266 VIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGV 325
             K  +         + +R+  +          P+       G    +           +
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLL---------PDGCTLIVGGEASTLSIWDLAAPTPRI 133

Query: 326 PMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLD 385
              +++          A           C         L + T+           SC   
Sbjct: 134 KAELTSSAPA--CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191

Query: 386 ILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFE 445
                        ++             +   + +I       +G   A           
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV- 250

Query: 446 LKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTF 505
                        +K QL        S+ F+Y     +  G D  +          +   
Sbjct: 251 -------LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303

Query: 506 TPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL 549
                +           +     S D +++   +      ++ +
Sbjct: 304 -----KESS-------SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 23/194 (11%), Positives = 52/194 (26%), Gaps = 20/194 (10%)

Query: 5   GGRLFSSSIDGSV----SEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHI 60
              L  ++ DGS+     +    D+K      ++    W      +   L      S   
Sbjct: 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 205

Query: 61  GNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDEL 120
               L   +   DD +   + +        +    +      A           +  D  
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265

Query: 121 IYHRSLPRVS----------------GRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 164
             +  L R++                     V +   G+ LY G +   +  ++     +
Sbjct: 266 QIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

Query: 165 IYRITVGLGGLGSG 178
           +  I +  G + + 
Sbjct: 326 VKNIKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 35/377 (9%), Positives = 86/377 (22%), Gaps = 54/377 (14%)

Query: 136 VTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLV 195
               A    +   +    +   D           +       GP   + +  +      V
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF---GPGTAMMAPDNRTA--YV 56

Query: 196 SADSTGSVQFWDSRHGTLL------QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYK 249
             +  G +   D                      + + A +P    V++T +  Q +   
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 250 ASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGR 309
              +        ++  +  K +    +    + +RA                        
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA------------------------ 152

Query: 310 EKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTI 369
               D S +        M +  G  T                          ++   +  
Sbjct: 153 --ADDGSLYVAGPDIYKMDVKTGKYTVALPLR--------NWNRKGYSAPDVLYFWPHQS 202

Query: 370 FSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNS 429
             H   +L   +   D        ++     S    +     Q  +  +        S  
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 430 GMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR 489
                Y    + + ++LK+ K+         +         + + F     +L + G   
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKL--------IKAANLD-HTYYCVAFDKKGDKLYLGGTFN 313

Query: 490 RIYVVDVSSSELLHTFT 506
            + V +  + E +    
Sbjct: 314 DLAVFNPDTLEKVKNIK 330

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 8e-07
 Identities = 23/165 (13%), Positives = 38/165 (23%), Gaps = 13/165 (7%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSI-----WQMAVAPSNSSLMHAVTNSD 58
               L+  S        D   L     + S  F I               S+       D
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 59  HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR-VALACDDGCVRIYRITDS 117
                  +   N            +S           E       A + G +  Y +   
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT- 307

Query: 118 DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG 162
                 R +  V   +  +  SAD   +     DG I ++  +  
Sbjct: 308 ------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 25/251 (9%), Positives = 58/251 (23%), Gaps = 8/251 (3%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
               F            +YD +     +  +      A+    +     V N        
Sbjct: 54  TKVAFIHGTREGDFLG-IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV 112

Query: 65  LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHR 124
             +    +    + E+     +   + + +     +     DG V         E     
Sbjct: 113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172

Query: 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184
           +    +    +  + AD   LY  S      S D  +    + +      +   P     
Sbjct: 173 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP 232

Query: 185 SLLSLRCGTLVSADSTGSVQFW-------DSRHGTLLQAHSFHKGDVNALAAAPSHNRVF 237
           + L  R  T  + +   +  +        D     ++          +            
Sbjct: 233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 292

Query: 238 STGSDGQVILY 248
                G ++ Y
Sbjct: 293 GAPEKGVLLKY 303

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 20/157 (12%)

Query: 8   LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLND 67
           + S+S D ++  W+    +    L      I  +                  + +G  ++
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ------------YRDRLVVSGSSDN 198

Query: 68  KSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRIT------DSDELI 121
                D    +        +EL      +++R+     DG ++++ +            +
Sbjct: 199 TIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

Query: 122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
             R+L   SGRV  + +  D   + S S D  I  WD
Sbjct: 259 CLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 39/284 (13%), Positives = 78/284 (27%), Gaps = 56/284 (19%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQ----SIDFSIWQMAVAPSNSSLMHAVTNSDHI 60
             ++ S   D ++  WD   L+ K +L     S+    +   V  + SS         + 
Sbjct: 25  DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 84

Query: 61  GNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR--------------------- 99
           G        +         +     +        V D                       
Sbjct: 85  GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 144

Query: 100 ------VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGY 153
                 +  A  D  ++++  +  + +       R               ++ SGSSD  
Sbjct: 145 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG-----IACLQYRDRLVVSGSSDNT 199

Query: 154 IRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG-- 211
           IR WD + G  +  +              +   +      +VS    G ++ WD      
Sbjct: 200 IRLWDIECGACLRVLE---------GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250

Query: 212 -------TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILY 248
                    L+    H G V  L       ++ S+  D  ++++
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 97  DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156
           DR V     D  +R++ I     L        +           D   + SG+ DG I+ 
Sbjct: 188 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC-----IRFDNKRIVSGAYDGKIKV 242

Query: 157 WDAKLGYEIYRITVG-LGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWD 207
           WD     +                   ++ L       +VS+    ++  WD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRL-QFDEFQIVSSSHDDTILIWD 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 45/299 (15%), Positives = 87/299 (29%), Gaps = 40/299 (13%)

Query: 2   GLPGGRLFSSSIDGSVSEWDLYDLKQKIVLQS----------IDFSIWQMAVAPSNSSLM 51
                 + ++S  G +  + +    +   +               S W +    SN  L+
Sbjct: 76  AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 135

Query: 52  H---AVTNSD------HIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVV-----ED 97
                 T+                  S   +   T E +   +S     Q        E 
Sbjct: 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 195

Query: 98  RRVALACDDGCVRIYR---ITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYI 154
             +A   ++G V+I     +          S+   S  + SV +S  G++L         
Sbjct: 196 GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 255

Query: 155 ---RSWDAKLGYEIYRITVGLGGLGSGPELCIWS------LLSLRCGTLVSADSTGSVQF 205
                ++ + G  I  ++V      +       S        +    TL SA   G ++F
Sbjct: 256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 315

Query: 206 WDSRHGTLLQAHSFHKGDV----NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG 260
           WD +    +   + H  D+    + LA     + +   G      L K     +G +  
Sbjct: 316 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 24/182 (13%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGL------GGLGSGPELCI 183
              + SV+     +   S S DGY++ WD KL                  GL     L  
Sbjct: 14  DADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 184 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQ----------AHSFHKGDVNALAAAPS- 232
               +     + +   +G + F+        +               K    AL    S 
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 233 ----HNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTV 288
                +R+ +T   G   ++K        ++ L+ +      +        T    A +V
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKF-HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

Query: 289 AV 290
            +
Sbjct: 191 DI 192

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 34/274 (12%), Positives = 79/274 (28%), Gaps = 48/274 (17%)

Query: 7   RLFSSSIDGSVSEWDLYDLKQKIVLQSIDF----------------SIWQMAVAPSNSSL 50
           RL ++ + G+   W  +    +    ++++                S +  +V  S   L
Sbjct: 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL 197

Query: 51  MHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVR 110
           + A   ++               + E+  S  ++ +     +   +   +A+A D     
Sbjct: 198 I-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256

Query: 111 IYRITD-------------SDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSW 157
              + +             +            S  V+S++++  G  L S   DG +R W
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316

Query: 158 DAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAH 217
           D K    I  +           E+    L     G  ++      V+F            
Sbjct: 317 DVKTKERITTLN----MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK--------- 363

Query: 218 SFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251
                   +   A  +  +     D  +  ++ +
Sbjct: 364 -----GWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 25/236 (10%), Positives = 55/236 (23%), Gaps = 38/236 (16%)

Query: 90  HEQSV----VEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSV--------- 136
           H+  +      +        DG ++++     D                 +         
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 137 -TWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGL--GSGPELCIWSL------L 187
              + +  ++ + S  G +  +      E  ++      L      +   W+L       
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 188 SLRCGTLVSADSTGSVQFWD----------------SRHGTLLQAHSFHKGDVNALAAAP 231
            L    LV+ D  G+   W                           S       A +   
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 232 SHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALT 287
           S   + +TG +   +            +  S   +I     + SV+          
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 20/177 (11%), Positives = 61/177 (34%), Gaps = 10/177 (5%)

Query: 7   RLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVA---PSNSSLMHAVTNSDHIGNG 63
           +L+    D  V + +   L +   +QS +   +         +       +    +    
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 64  YLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIY------RITDS 117
            ++     +        + ++    + E  +++    + A +    R +         D 
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL 267

Query: 118 DELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG 174
           ++    + +P +     SV  S DG+ ++ G + G + ++DA+   +  ++ +    
Sbjct: 268 EKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 189
           +  + +++ SADG  L+S  ++G+I SWD   G                    I  + + 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV-------FPDVHATMITGIKTT 64

Query: 190 RCGTLVSADSTGSVQFWDSRHGTL 213
             G L +      ++   +    +
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 101 ALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWD 158
           A    D  V ++ +    +             V SV W  +   + S   D  I+ W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSA 197
           WS D   L +GS D  +  W+     +   I       G+     + S++ L   T+VSA
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-----KGAHAMSSVNSVIWLNETTIVSA 286

Query: 198 DSTGSVQFWD 207
               +++FW+
Sbjct: 287 GQDSNIKFWN 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 34/305 (11%), Positives = 83/305 (27%), Gaps = 55/305 (18%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVL-QSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG 63
              L  +S DGS++ +      + + L QS+ +    +     +++ +     +      
Sbjct: 23  KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82

Query: 64  YLNDKSNDSDDH--------------------------------------------ETSE 79
            ++   + S                                                 + 
Sbjct: 83  KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142

Query: 80  SENDSDSDELHEQSVVEDRRVALACDDGCVRIYRI-TDSDELIYHRSLPRVSGRVLSVTW 138
           + N++              R+ +  ++  V+ +R+    D+                   
Sbjct: 143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202

Query: 139 SADGNMLYSGSSDGYIRSWDAKLGYEIYRITVG-------LGGLGSGPELCIWSL-LSLR 190
             +       S DG +         + Y  +         L    +     + S+  S R
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262

Query: 191 CGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKA 250
              L +A S G +  W+ +    ++  +    + + +  A S N +    SD       A
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321

Query: 251 SCESI 255
             ++I
Sbjct: 322 IDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 5/44 (11%), Positives = 14/44 (31%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG 173
              +  +      ++L   S DG +  +   +  +   +   L 
Sbjct: 11  KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR 54

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 97  DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRS 156
             ++A A  D  ++I+ +             R+  + L + W      L S S++G+I  
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF 307

Query: 157 WD 158
            +
Sbjct: 308 VN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 28/245 (11%), Positives = 65/245 (26%), Gaps = 7/245 (2%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
           G    S  + G+V  WD            I  +   +   P       + +         
Sbjct: 70  GYYCASGDVHGNVRIWDTTQTTH------ILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

Query: 65  LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHR 124
                +       + + N +           +  R              I +     +  
Sbjct: 124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 183

Query: 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184
           +    +  V SV ++ DG++  S   DG I  ++   G +            +       
Sbjct: 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 243

Query: 185 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKG-DVNALAAAPSHNRVFSTGSDG 243
              S     + SA +  +++ W+     + +        +   L    +   + S  ++G
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 244 QVILY 248
            +   
Sbjct: 304 FINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 137 TWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVS 196
           TWS DG  + S S+D  I+ W+         I V     G+  E      +      LVS
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-----GTRIEDQQLG-IIWTKQALVS 298

Query: 197 ADSTGSVQFWD 207
             + G + F +
Sbjct: 299 ISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 10/62 (16%), Positives = 19/62 (30%)

Query: 192 GTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS 251
           G  +   +  SV        T  + ++ H         +PS     S    G V ++  +
Sbjct: 29  GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88

Query: 252 CE 253
             
Sbjct: 89  QT 90

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 27/330 (8%), Positives = 81/330 (24%), Gaps = 24/330 (7%)

Query: 194 LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE 253
            V+    G +   D     +++        V+    + S   +   G D ++ +      
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA- 92

Query: 254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPI 313
                  ++  ++  +   V S +   ++ R          +  + + +    +      
Sbjct: 93  --KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150

Query: 314 DFSYH--KWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFS 371
             +     +        I A  +   F     + T             + +  +    F 
Sbjct: 151 GMTVDTQTYHPEPRVAAIIASHEHPEF-IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL 209

Query: 372 H--------TSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC 423
                       +    +     +    +  + +    G                  +  
Sbjct: 210 ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269

Query: 424 STISNSGMLFAYSDH---VKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSS 480
           ++    G +              ++      GQG   +  +  P+         F+ D+ 
Sbjct: 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR 329

Query: 481 QLIIAGHDRRIYVVDVSSSELLHTFTPCRE 510
                   + + V D+ + +  +   P  E
Sbjct: 330 ------ISQSVAVFDLKNLDAKYQVLPIAE 353

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 8e-05
 Identities = 26/179 (14%), Positives = 41/179 (22%), Gaps = 6/179 (3%)

Query: 105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE 164
           D G + +    DS +++  + +      V     SA G  L     D  I   D      
Sbjct: 40  DAGQIALVD-GDSKKIV--KVID-TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP 95

Query: 165 IYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDV 224
                + +G      E   +     R  T+  A         D       Q  S     V
Sbjct: 96  TKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 154

Query: 225 NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDV 283
           +     P         S           E+                  +G+      D 
Sbjct: 155 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP-FLADG 212

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.4 bits (101), Expect = 7e-05
 Identities = 14/183 (7%), Positives = 48/183 (26%), Gaps = 15/183 (8%)

Query: 4   PGGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNG 63
                +  S   S++  DL        +     +  Q   + +  +    +       + 
Sbjct: 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSI 233

Query: 64  YLNDKSNDS-------DDHETSESENDSDSDELHEQSVVED-RRVALACDDGCVRIYRIT 115
              D            D +E+    ++  S      + +++   + +   +         
Sbjct: 234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293

Query: 116 DSDELIYHRSLPRV-----SGRVLSVTWSADGN-MLY-SGSSDGYIRSWDAKLGYEIYRI 168
           ++   +                  ++  + DG    Y + +    +  +DA    +   +
Sbjct: 294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

Query: 169 TVG 171
            + 
Sbjct: 354 ELD 356

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 12/150 (8%), Positives = 25/150 (16%), Gaps = 18/150 (12%)

Query: 130 SGRVLSVTWSADGNMLY----------SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP 179
              +        G+              G    Y+  +D      I  I +      S  
Sbjct: 64  GAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123

Query: 180 ELCIWSLLSLRCGTLVSADST-GSVQFWDSRHGTLLQ-------AHSFHKGDVNALAAAP 231
                         L+       +         +  Q        H            + 
Sbjct: 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC 183

Query: 232 SHNRVFSTGSDGQVILYKASCESIGPNDGL 261
             +   S  +           +  G  +  
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCS 213

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 36/329 (10%), Positives = 97/329 (29%), Gaps = 18/329 (5%)

Query: 177 SGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV 236
            G    + + L      +++      ++ +DS +   L   S H G V AL  A     V
Sbjct: 9   RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 237 FSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISRED 296
             +      +            +G +S+      +   +++      R  T+ V      
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW----- 123

Query: 297 PLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA 356
            LP++      G E      +H        + +  G    +     +     S       
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 357 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK 416
                  +    I S  +  +       +       +   +             +++   
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-------------IRIWDL 230

Query: 417 ASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFS 476
            + +++ +   ++ ++       K  +     G +   +     R+         ++   
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 477 YDSSQLIIAGHDRRIYVVDVSSSELLHTF 505
           Y S  ++++G + +  + ++ S +L+H  
Sbjct: 291 YVSDNILVSGSENQFNIYNLRSGKLVHAN 319

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 11/145 (7%)

Query: 130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSL 189
              V++     + N + +G+ D  IR +D+     + +++        G +  +W+L   
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYA 62

Query: 190 RCGTLVSADS--TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVIL 247
             G LVS  +  T  V        T +            +    +   + +   D  + +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 248 YKASCESIGPNDGLSSSEVIKKWIY 272
           +K   ES  P+ G      +     
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTP 147

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 8/64 (12%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 97  DRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG--YI 154
              + ++  +    IY +     +  H ++ + + ++ SV +     ++ +   DG  ++
Sbjct: 293 SDNILVSGSENQFNIYNLRSGKLV--HANILKDADQIWSVNFKGKT-LVAAVEKDGQSFL 349

Query: 155 RSWD 158
              D
Sbjct: 350 EILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 90  HEQSVV-----EDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNM 144
           H  SV+     ED  V    DD  +R+Y   +   L     L    G V ++ ++  G +
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFL---LQLSGHDGGVWALKYA-HGGI 66

Query: 145 LYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQ 204
           L SGS+D  +R WD K G   +          +    C+  +       +V+     ++ 
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEG-----HNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 205 FWDSRHGTLLQAHSFH 220
            W     + +  H   
Sbjct: 122 VWKLPKESSVPDHGEE 137

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 25/163 (15%)

Query: 105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLG-- 162
           D G + +    D         L      V     SA G  L+    DG +   D  +   
Sbjct: 40  DAGQIALI---DGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95

Query: 163 YEIYRITVGLGGLGSGPELCIWSLLSLRCGTL--VSADSTGSVQFWDSRHGTLLQAHSFH 220
             +  I +     GS       S +           A         D       +  S  
Sbjct: 96  TTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150

Query: 221 K-----------GDVNALAAAPSHNR-VFSTGSDGQVILYKAS 251
                         V A+ A+      + +    G+++L   +
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 138 WSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSA 197
              D     +  +D  IR WD      + + T+               +++   G ++S 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD----KQQLGNQQVGVVATGNGRIISL 314

Query: 198 DSTGSVQFWD 207
              G++ F++
Sbjct: 315 SLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 26/248 (10%), Positives = 60/248 (24%), Gaps = 3/248 (1%)

Query: 5   GGRLFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGY 64
              L S    G V  W     K+   ++    S +Q+   P +            +    
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 65  LNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHR 124
            ++          +     S   +      ++  R   +   G              +  
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196

Query: 125 SLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW 184
           S      +   V                      +    +       +       +  I+
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256

Query: 185 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA---PSHNRVFSTGS 241
           +L  L      +  +  +++ WD      +Q  +  K  +           + R+ S   
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 242 DGQVILYK 249
           DG +  Y+
Sbjct: 317 DGTLNFYE 324

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 129 VSGRVLSVTWSADGNMLY-SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG 178
           V      +  + DG  +Y + S    +   D         + VG     SG
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYASG 292

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 135 SVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTL 194
           +     + +++ +GS D  I  +  K   +I +               + +LL     TL
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-------GVNNLLWETPSTL 272

Query: 195 VSADSTGSVQFWD 207
           VS+ +   ++ W+
Sbjct: 273 VSSGADACIKRWN 285

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 129 VSGRVLSVTWSADGNMLY--SGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPE 180
           +   + S+  S D   L     + D  +   DA+ G E+  +      LG GP+
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN----QLGHGPQ 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	744
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.97
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.96
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.96
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.93
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.93
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.92
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.86
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.86
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.73
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.7
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.67
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.61
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.45
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.42
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.41
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.38
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.34
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.2
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.06
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.66
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.56
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.53
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.46
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.24
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.19
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.1
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.09
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.78
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.69
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.4
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.21
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.18
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.78
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.35
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.12
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.9
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.93
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.2
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.87
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.86
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	86.08
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.18

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=284.24  Aligned_cols=315  Identities=17%  Similarity=0.234  Sum_probs=218.4

Q ss_pred             EEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99765780538960148312599642699854431114554577633688999998767667799986000012324589
Q 004581           19 EWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDR   98 (744)
Q Consensus        19 iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (744)
                      .|.+ ......+|.+|.+.|++++|+|++                                                  +
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~--------------------------------------------------~   30 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHPVF--------------------------------------------------S   30 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECSSS--------------------------------------------------S
T ss_pred             CCCC-CCCCCEEECCCCCCEEEEEECCCC--------------------------------------------------C
T ss_conf             3689-898448985888876899993898--------------------------------------------------9


Q ss_pred             EEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf             69987449719999950798326840136755748999971699989998289909999866893599998147998889
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      +||+|+.||.|+|||+.+++.+   ..+.+|...|.+++|+|++.++++++.++.+.+|+.........+.        .
T Consensus        31 ~l~s~s~Dg~i~iWd~~~~~~~---~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   99 (317)
T d1vyhc1          31 VMVSASEDATIKVWDYETGDFE---RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--------G   99 (317)
T ss_dssp             EEEEEESSSCEEEEETTTCCCC---EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC--------C
T ss_pred             EEEEEECCCEEEEEECCCCCEE---EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------C
T ss_conf             9999938992999989999799---9995788867777630111101111111110111001111111100--------0


Q ss_pred             CCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf             95259999990599-29998399979997299862489862166532599984899979954379819999810476899
Q 004581          179 PELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP  257 (744)
Q Consensus       179 ~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  257 (744)
                      +...+.++.+++++ .+++++.|+.+++||+++++.+..+.+|...+.+++|++++.+|++++.|+.+++|+.....   
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~---  176 (317)
T d1vyhc1         100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---  176 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---
T ss_pred             CCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCE---
T ss_conf             00000000016998557765267523575114430346871677763000016679999999279829997512540---


Q ss_pred             CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf             98887643311189996323105861234430357789999833111247988775444332135897399986389809
Q 004581          258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL  337 (744)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i  337 (744)
                                    ....+..|...+.++.                                                  
T Consensus       177 --------------~~~~~~~~~~~i~~~~--------------------------------------------------  192 (317)
T d1vyhc1         177 --------------CKAELREHRHVVECIS--------------------------------------------------  192 (317)
T ss_dssp             --------------EEEEECCCSSCEEEEE--------------------------------------------------
T ss_pred             --------------EEEEEECCCCCCEEEE--------------------------------------------------
T ss_conf             --------------3478824778733799--------------------------------------------------


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             99746765777886557999888400012213317738999928947999710357745678998878751289998349
Q 004581          338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA  417 (744)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (744)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (317)
T d1vyhc1         193 --------------------------------------------------------------------------------  192 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf             97749999707999999983981299996227889722786210588345652189991089989999179919999946
Q 004581          418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~  497 (744)
                              ++|++......                             .........+..++.++++++.|+.|++|++.
T Consensus       193 --------~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         193 --------WAPESSYSSIS-----------------------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             --------ECCSCGGGGGG-----------------------------GCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             --------EEECCCCCEEE-----------------------------CCCCCEEEEECCCCCEEEECCCCCEEEEEECC
T ss_conf             --------86325641110-----------------------------34563034302588614751699789998889


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCC
Q ss_conf             97112210568645566689999966799987799899999489829999988851478980678986369865499999
Q 004581          498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN  577 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~  577 (744)
                      +++++.++.+           |...|++++|+|++++|++++.||.|++||+.+++....+.. |...|++++|+| +++
T Consensus       236 ~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~V~~~~~s~-~~~  302 (317)
T d1vyhc1         236 TGMCLMTLVG-----------HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHK-TAP  302 (317)
T ss_dssp             TTEEEEEEEC-----------CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CSSCEEEEEECS-SSS
T ss_pred             CCCEEEEEEC-----------CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CCCCEEEEEECC-CCC
T ss_conf             9968899968-----------899879999879999999997989499999999919999928-999889999949-999


Q ss_pred             EEEEEECCCEEEEEE
Q ss_conf             399993698399999
Q 004581          578 VLIITTSSNQVYVFD  592 (744)
Q Consensus       578 ~l~~~~~d~~i~iwd  592 (744)
                      +|++++.|++|++||
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEECCCEEEEEC
T ss_conf             999992899499829

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=282.04  Aligned_cols=281  Identities=17%  Similarity=0.237  Sum_probs=162.3

Q ss_pred             CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE---EEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCE
Q ss_conf             75574899997169998999828990999986689359---999814799888995259999990599-29998399979
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI---YRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSV  203 (744)
Q Consensus       128 ~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i  203 (744)
                      .|...|++++|+|+|++|++|+ ||.|+|||+.++...   ..+..      .+|...|.+++|+|++ +|++++.|+.|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~------~~h~~~I~~v~~s~dg~~l~s~~~dg~i  121 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC------LNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC------SCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf             9999289999989999999997-99889977367763311687640------4889968999986799889886123321


Q ss_pred             EEEECCC--CCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf             9972998--62489862166532599984899979954379819999810476899988876433111899963231058
Q 004581          204 QFWDSRH--GTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTH  281 (744)
Q Consensus       204 ~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  281 (744)
                      ++||+..  .+....+..|...+.+++|+|++..+++++.|+.+++|++....                 +......|..
T Consensus       122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-----------------~~~~~~~~~~  184 (337)
T d1gxra_         122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------------LVRQFQGHTD  184 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------EEEEECCCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------------CCCCCCCCCC
T ss_conf             11111111111111111111111111111111111111111111111111111-----------------1111111111


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             61234430357789999833111247988775444332135897399986389809997467657778865579998884
Q 004581          282 DVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVP  361 (744)
Q Consensus       282 ~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  361 (744)
                      .+.+++++         +++.                        .+++++.|+.+++|++.+..               
T Consensus       185 ~v~~l~~s---------~~~~------------------------~~~~~~~d~~v~i~d~~~~~---------------  216 (337)
T d1gxra_         185 GASCIDIS---------NDGT------------------------KLWTGGLDNTVRSWDLREGR---------------  216 (337)
T ss_dssp             CEEEEEEC---------TTSS------------------------EEEEEETTSEEEEEETTTTE---------------
T ss_pred             CCCCCCCC---------CCCC------------------------CCCCCCCCCCCCCCCCCCCE---------------
T ss_conf             11101234---------4432------------------------11223566553211111100---------------


Q ss_pred             CCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCE
Q ss_conf             00012213317738999928947999710357745678998878751289998349977499997079999999839812
Q 004581          362 IHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKP  441 (744)
Q Consensus       362 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i  441 (744)
                                                                     .+..                             
T Consensus       217 -----------------------------------------------~~~~-----------------------------  220 (337)
T d1gxra_         217 -----------------------------------------------QLQQ-----------------------------  220 (337)
T ss_dssp             -----------------------------------------------EEEE-----------------------------
T ss_pred             -----------------------------------------------EECC-----------------------------
T ss_conf             -----------------------------------------------0002-----------------------------


Q ss_pred             EEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99996227889722786210588345652189991089989999179919999946971122105686455666899999
Q 004581          442 SLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEP  521 (744)
Q Consensus       442 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (744)
                                         .   .+...+.+++|+|+++++++++.|+.+++|++.+++.... ..           |..
T Consensus       221 -------------------~---~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~-----------~~~  266 (337)
T d1gxra_         221 -------------------H---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HL-----------HES  266 (337)
T ss_dssp             -------------------E---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CC-----------CSS
T ss_pred             -------------------C---CCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCC-CC-----------CCC
T ss_conf             -------------------4---6666157999715303000000256421111111110000-12-----------456


Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEC
Q ss_conf             667999877998999994898299999888514789806789863698654999993999936983999996
Q 004581          522 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       522 ~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~  593 (744)
                      .|++++|+|++++|++++.||.|++||+.+++....+.  |...|++++|+| ++++|++++.|++|++||+
T Consensus       267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~-d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISV-DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC--CCCCEEEEEEEC-CCCEEEEEECCCEEEEEEE
T ss_conf             54169998999999999489969999899997999926--999879999927-9999999908996999977

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=276.87  Aligned_cols=338  Identities=12%  Similarity=0.144  Sum_probs=217.2

Q ss_pred             EEEEEECCCEEEEEEECCCCCEEE-EECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCC---
Q ss_conf             699874497199999507983268-4013675574899997169998999828990999986689359999814799---
Q 004581           99 RVALACDDGCVRIYRITDSDELIY-HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGG---  174 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~---  174 (744)
                      ....+..++...+|+......+.. .....+|.+.|+|++|+|||++|++|+ |+.|++||+.+++.+..+......   
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             CCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf             3224688970898688777620541076079999689999999999999994-994899981364057663166544324


Q ss_pred             -------CCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEE
Q ss_conf             -------888995259999990599-299983999799972998624898621665325999848999799543798199
Q 004581          175 -------LGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVI  246 (744)
Q Consensus       175 -------~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~  246 (744)
                             ....+...|.+++|+|++ +|++++.||.|++|+...++.+..+.+|...|.++++++++..+++++.++.++
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             43211101467789889999889998012134441111211111111111111111111101111111111222101565


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99810476899988876433111899963231058612344303577899998331112479887754443321358973
Q 004581          247 LYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVP  326 (744)
Q Consensus       247 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  326 (744)
                      +|+.....                  ......+.....++.+.                                ..++.
T Consensus       189 ~~d~~~~~------------------~~~~~~~~~~~~~~~~~--------------------------------~~~~~  218 (388)
T d1erja_         189 IWDLRTGQ------------------CSLTLSIEDGVTTVAVS--------------------------------PGDGK  218 (388)
T ss_dssp             EEETTTTE------------------EEEEEECSSCEEEEEEC--------------------------------STTCC
T ss_pred             EEECCCCC------------------CCCCCCCCCCCCCCCCC--------------------------------CCCCC
T ss_conf             41011111------------------10000124544211236--------------------------------88787


Q ss_pred             EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99986389809997467657778865579998884000122133177389999289479997103577456789988787
Q 004581          327 MLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHAS  406 (744)
Q Consensus       327 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  406 (744)
                      +|++++.|+.+++|+........                                                         
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~---------------------------------------------------------  241 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVE---------------------------------------------------------  241 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEE---------------------------------------------------------
T ss_pred             EEEEECCCCEEEEEECCCCCCCE---------------------------------------------------------
T ss_conf             58997389819996345573000---------------------------------------------------------


Q ss_pred             CCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf             51289998349977499997079999999839812999962278897227862105883456521899910899899991
Q 004581          407 TSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAG  486 (744)
Q Consensus       407 ~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~  486 (744)
                           .+.                                           ........|...+.+++|+|++++|++++
T Consensus       242 -----~~~-------------------------------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         242 -----RLD-------------------------------------------SENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             -----EEC-------------------------------------------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -----EEC-------------------------------------------CCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf             -----102-------------------------------------------44333457789878999979999999997


Q ss_pred             CCCCEEEEECCCCCEEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCC
Q ss_conf             799199999469711221056864-5566689999966799987799899999489829999988851478980678986
Q 004581          487 HDRRIYVVDVSSSELLHTFTPCRE-EHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGAS  565 (744)
Q Consensus       487 ~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~  565 (744)
                      .|+.|++||+.+++.......... ........|...|++++|+|++++|++++.||.|++||+.++++...+.. |...
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-H~~~  352 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNS  352 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CSSC
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCCC
T ss_conf             899289875157764321013444200110124553278999889999999996989799999999969999968-8997


Q ss_pred             EEEEE------ECCCCCCEEEEEECCCEEEEEECC
Q ss_conf             36986------549999939999369839999968
Q 004581          566 VTAAG------FPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       566 v~~l~------~sp~d~~~l~~~~~d~~i~iwd~~  594 (744)
                      |++++      |+| ++.+|++++.||+|++|+++
T Consensus       353 V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         353 VISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEECCCCCCC-CCCEEEEEECCCEEEEEEEE
T ss_conf             89999846742589-99999999189979997621

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=280.03  Aligned_cols=330  Identities=17%  Similarity=0.195  Sum_probs=255.9

Q ss_pred             EEEECCCCEEEEEECCCCCEE----EEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             587339970899976578053----8960148312599642699854431114554577633688999998767667799
Q 004581            8 LFSSSIDGSVSEWDLYDLKQK----IVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         8 l~~~~~dg~i~iwd~~~~~~~----~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      .+....++...+|+....+..    ....+|.+.|+|++|+|||                                    
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg------------------------------------   74 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG------------------------------------   74 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS------------------------------------
T ss_pred             CCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCC------------------------------------
T ss_conf             22468897089868877762054107607999968999999999------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEE---------------ECCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf             9860000123245896998744971999995079832684---------------0136755748999971699989998
Q 004581           84 SDSDELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYH---------------RSLPRVSGRVLSVTWSADGNMLYSG  148 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~---------------~~l~~h~~~V~~i~~s~dg~~l~t~  148 (744)
                                    ++||+|+ |+.|+||++.+++.+...               .....|...|++++|+|++++|++|
T Consensus        75 --------------~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          75 --------------EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             --------------SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             --------------CEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEC
T ss_conf             --------------9999994-9948999813640576631665443244321110146778988999988999801213


Q ss_pred             ECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf             28990999986689359999814799888995259999990599-29998399979997299862489862166532599
Q 004581          149 SSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNAL  227 (744)
Q Consensus       149 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l  227 (744)
                      +.||.|++|+...++....+.        +|...|.++.+++++ .+++++.++.+++||..+.........+...+...
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQ--------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             444111121111111111111--------111111110111111111122210156541011111100001245442112


Q ss_pred             EECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             98489997995437981999981047689998887643311189996323105861234430357789999833111247
Q 004581          228 AAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSR  307 (744)
Q Consensus       228 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~  307 (744)
                      .+.+++.+|++++.|+.|++|+.......          ...........+|...|.+++++         +++.     
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~----------~~~~~~~~~~~~h~~~v~~l~~s---------~~~~-----  267 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLV----------ERLDSENESGTGHKDSVYSVVFT---------RDGQ-----  267 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEE----------EEEC------CCCSSCEEEEEEC---------TTSS-----
T ss_pred             CCCCCCCEEEEECCCCEEEEEECCCCCCC----------EEECCCCCCCCCCCCCEEEEEEC---------CCCC-----
T ss_conf             36887875899738981999634557300----------01024433345778987899997---------9999-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEE
Q ss_conf             98877544433213589739998638980999746765777886557999888400012213317738999928947999
Q 004581          308 GREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDIL  387 (744)
Q Consensus       308 ~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~  387 (744)
                                         .|++++.|+.+++|++..........                                   
T Consensus       268 -------------------~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------------  293 (388)
T d1erja_         268 -------------------SVVSGSLDRSVKLWNLQNANNKSDSK-----------------------------------  293 (388)
T ss_dssp             -------------------EEEEEETTSEEEEEEC---------------------------------------------
T ss_pred             -------------------EEEEEECCCCEEEEECCCCCCCCCCC-----------------------------------
T ss_conf             -------------------99999789928987515776432101-----------------------------------


Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCC
Q ss_conf             71035774567899887875128999834997749999707999999983981299996227889722786210588345
Q 004581          388 SVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKL  467 (744)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  467 (744)
                                                 ..  .         .                      ....     .....|.
T Consensus       294 ---------------------------~~--~---------~----------------------~~~~-----~~~~~~~  308 (388)
T d1erja_         294 ---------------------------TP--N---------S----------------------GTCE-----VTYIGHK  308 (388)
T ss_dssp             -----------------------------------------------------------------CEE-----EEEECCS
T ss_pred             ---------------------------CC--C---------C----------------------CCEE-----EECCCCC
T ss_conf             ---------------------------34--4---------4----------------------2001-----1012455


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE------CCCCCEEEEEECC
Q ss_conf             6521899910899899991799199999469711221056864556668999996679998------7799899999489
Q 004581          468 QFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFT------SSDGQWLAAVNCF  541 (744)
Q Consensus       468 ~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------s~dg~~las~~~d  541 (744)
                      ..+.+++|+|++++|++++.||.|++||+.+++++.++.+           |.+.|+++++      +|++++||+++.|
T Consensus       309 ~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-----------H~~~V~~~~~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----------HRNSVISVAVANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-----------CCCCEEEEEEECCCCCCCCCCEEEEEECC
T ss_conf             3278999889999999996989799999999969999968-----------89978999984674258999999999189


Q ss_pred             CCEEEEECC
Q ss_conf             829999988
Q 004581          542 GDVYIFNLE  550 (744)
Q Consensus       542 g~i~iwd~~  550 (744)
                      |.|+||+++
T Consensus       378 g~I~iW~~~  386 (388)
T d1erja_         378 CKARIWKYK  386 (388)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEEE
T ss_conf             979997621

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=276.68  Aligned_cols=288  Identities=15%  Similarity=0.196  Sum_probs=234.0

Q ss_pred             CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             05389601483125996426998544311145545776336889999987676677999860000123245896998744
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      +.+.++ .|...|.|++|+|++                                                  ++||+|+ 
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g--------------------------------------------------~~latg~-   70 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPT--------------------------------------------------RHVYTGG-   70 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSS--------------------------------------------------SEEEEEC-
T ss_pred             EEEEEC-CCCCCEEEEEECCCC--------------------------------------------------CEEEEEE-
T ss_conf             499987-999928999998999--------------------------------------------------9999997-


Q ss_pred             CCEEEEEEECCCCCE--EEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC--EEEEEEECCCCCCCCCCE
Q ss_conf             971999995079832--6840136755748999971699989998289909999866893--599998147998889952
Q 004581          106 DGCVRIYRITDSDEL--IYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPEL  181 (744)
Q Consensus       106 dg~i~iwd~~~~~~~--~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~  181 (744)
                      ||.|+|||+......  .......+|.+.|.+++|+|++++|++++.|+.|++||+....  ....+.        .|..
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~  142 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT--------SSAP  142 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE--------CSSS
T ss_pred             CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--------CCCC
T ss_conf             99889977367763311687640488996899998679988988612332111111111111111111--------1111


Q ss_pred             EEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf             59999990599-29998399979997299862489862166532599984899979954379819999810476899988
Q 004581          182 CIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG  260 (744)
Q Consensus       182 ~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  260 (744)
                      .+.++.|+|++ .+++++.++.|++|++.++++......|...|.+++|++++..+++++.|+.+++|++..+.      
T Consensus       143 ~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~------  216 (337)
T d1gxra_         143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR------  216 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE------
T ss_conf             11111111111111111111111111111111111111111111101234443211223566553211111100------


Q ss_pred             CCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf             87643311189996323105861234430357789999833111247988775444332135897399986389809997
Q 004581          261 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY  340 (744)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~  340 (744)
                                  ......|...|.+++++         |++.                        .+++++.|+.+++|
T Consensus       217 ------------~~~~~~~~~~i~~l~~~---------~~~~------------------------~l~~~~~d~~i~i~  251 (337)
T d1gxra_         217 ------------QLQQHDFTSQIFSLGYC---------PTGE------------------------WLAVGMESSNVEVL  251 (337)
T ss_dssp             ------------EEEEEECSSCEEEEEEC---------TTSS------------------------EEEEEETTSCEEEE
T ss_pred             ------------EECCCCCCCCEEEEEEC---------CCCC------------------------CCCEECCCCCCCCC
T ss_conf             ------------00024666615799971---------5303------------------------00000025642111


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             46765777886557999888400012213317738999928947999710357745678998878751289998349977
Q 004581          341 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK  420 (744)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (744)
                      ++....                                                                          
T Consensus       252 d~~~~~--------------------------------------------------------------------------  257 (337)
T d1gxra_         252 HVNKPD--------------------------------------------------------------------------  257 (337)
T ss_dssp             ETTSSC--------------------------------------------------------------------------
T ss_pred             CCCCCC--------------------------------------------------------------------------
T ss_conf             111111--------------------------------------------------------------------------


Q ss_pred             EEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCC
Q ss_conf             49999707999999983981299996227889722786210588345652189991089989999179919999946971
Q 004581          421 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       421 i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~  500 (744)
                                                       .      .....|...+++++|+|++++|++++.||.|++||+.+++
T Consensus       258 ---------------------------------~------~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         258 ---------------------------------K------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             ---------------------------------E------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ---------------------------------C------CCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf             ---------------------------------0------0001245654169998999999999489969999899997


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             1221056864556668999996679998779989999948982999998
Q 004581          501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~  549 (744)
                      .+..+.            |...|++++|+|++++|++++.||.|+|||+
T Consensus       299 ~~~~~~------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         299 SIFQSK------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEE------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEECC------------CCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf             999926------------9998799999279999999908996999977

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-44  Score=265.45  Aligned_cols=164  Identities=13%  Similarity=0.106  Sum_probs=134.3

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf             48312599642699854431114554577633688999998767667799986000012324589699874497199999
Q 004581           34 IDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVRIYR  113 (744)
Q Consensus        34 h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~iwd  113 (744)
                      ..++|+|++|+|++                                                  ++||+++.|+.|+||+
T Consensus         6 ~~~pIt~~~~s~dg--------------------------------------------------~~la~~~~~~~i~iw~   35 (371)
T d1k8kc_           6 LVEPISCHAWNKDR--------------------------------------------------TQIAICPNNHEVHIYE   35 (371)
T ss_dssp             CSSCCCEEEECTTS--------------------------------------------------SEEEEECSSSEEEEEE
T ss_pred             CCCCEEEEEECCCC--------------------------------------------------CEEEEEECCCEEEEEE
T ss_conf             99883899998999--------------------------------------------------9999994889899998


Q ss_pred             ECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-
Q ss_conf             5079832684013675574899997169998999828990999986689359999814799888995259999990599-
Q 004581          114 ITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-  192 (744)
Q Consensus       114 ~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-  192 (744)
                      ..+ ..+.....+.+|.+.|.+++|+|++++|++++.|+.|++||+.++.....+...      +|...|.++.|+|++ 
T Consensus        36 ~~~-~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~------~~~~~v~~i~~~p~~~  108 (371)
T d1k8kc_          36 KSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL------RINRAARCVRWAPNEK  108 (371)
T ss_dssp             EET-TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC------CCSSCEEEEEECTTSS
T ss_pred             CCC-CCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCC------CCCCCCCCCCCCCCCC
T ss_conf             889-978999995588998889999799999999979993999862033211001223------2211000111111121


Q ss_pred             EEEEECCCCCEEEEECCCCCE----EEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCC
Q ss_conf             299983999799972998624----89862166532599984899979954379819999810476
Q 004581          193 TLVSADSTGSVQFWDSRHGTL----LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      .+++++.++.+++|+......    ......|...|.+++|+|++.+|++++.|+.+++|+.....
T Consensus       109 ~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~  174 (371)
T d1k8kc_         109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  174 (371)
T ss_dssp             EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCC
T ss_conf             100000257630254420334331110010111222111111111110001347679998401576

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-44  Score=267.17  Aligned_cols=165  Identities=14%  Similarity=0.119  Sum_probs=104.7

Q ss_pred             CEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf             96998744971999995079832684013675574899997169998999828990999986689359999814799888
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      +.||.+. ++.|.+|++.+....   +.+.+|.+.|++++|+|+|++|++|+.||.|++||+.++.........      
T Consensus        30 ~~l~~~~-~~~v~i~~~~~~~~~---~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~------   99 (311)
T d1nr0a1          30 DKIQYCN-GTSVYTVPVGSLTDT---EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP------   99 (311)
T ss_dssp             SEEEEEE-TTEEEEEETTCSSCC---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE------
T ss_pred             CEEEEEE-CCEEEEEECCCCCEE---EEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCC------
T ss_conf             9999996-999999999999661---797478888899999489996722556736746631011110000134------


Q ss_pred             CCCEEEEEEEEECCC-EEEEECC--CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCCCEEEEEECCCC
Q ss_conf             995259999990599-2999839--997999729986248986216653259998489997-995437981999981047
Q 004581          178 GPELCIWSLLSLRCG-TLVSADS--TGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR-VFSTGSDGQVILYKASCE  253 (744)
Q Consensus       178 ~~~~~v~~i~~~~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~~~~~dg~i~iw~~~~~  253 (744)
                      .|...|.+++|+|++ .+++++.  +..+++|++++++....+.+|...|.+++|+|++++ +++|+.|+.|++|+.+..
T Consensus       100 ~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~  179 (311)
T d1nr0a1         100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF  179 (311)
T ss_dssp             CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             33575433233311100011112211111111111111111111111111111112111012000112211111111111


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEE
Q ss_conf             689998887643311189996323105861234430
Q 004581          254 SIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVA  289 (744)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  289 (744)
                      .                 .......|...|.++.++
T Consensus       180 ~-----------------~~~~~~~~~~~i~~v~~~  198 (311)
T d1nr0a1         180 K-----------------FKSTFGEHTKFVHSVRYN  198 (311)
T ss_dssp             E-----------------EEEEECCCSSCEEEEEEC
T ss_pred             C-----------------CCCCCCCCCCCCCCCCCC
T ss_conf             1-----------------111111111111112347

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-43  Score=259.96  Aligned_cols=120  Identities=15%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             ECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCC
Q ss_conf             013675574899997169998999828990999986689359999814799888995259999990599-2999839997
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS  202 (744)
Q Consensus       124 ~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~  202 (744)
                      ++|.||.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.        .|...|.+++|+|++ ++++++.|+.
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--------~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE--------CSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE--------CCCCCEEEEEEECCCEEEEEECCCCE
T ss_conf             7988878988899998999999999789955563102102579972--------46533775676012114431013320


Q ss_pred             EEEEECCCC----CEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
Q ss_conf             999729986----24898621665325999848999799543798199998104
Q 004581          203 VQFWDSRHG----TLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       203 i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      +.+|+....    .....+.+|........... +..+.....|.....+....
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  173 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTT
T ss_pred             EECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
T ss_conf             101332222122211100135421101111111-11111112445432001232

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-44  Score=264.26  Aligned_cols=123  Identities=17%  Similarity=0.262  Sum_probs=66.7

Q ss_pred             ECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCC
Q ss_conf             013675574899997169998999828990999986689359999814799888995259999990599-2999839997
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGS  202 (744)
Q Consensus       124 ~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~  202 (744)
                      ..|.+|.+.|++++|+|++++|+||+.||+|++||+.+++.+..+.        +|...|.++.|++++ .++++..++.
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--------~h~~~V~~~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------GHTDSVQDISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--------CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--------CCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             8985888876899993898999999389929999899997999995--------78886777763011110111111111


Q ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCC
Q ss_conf             9997299862489862166532599984899979954379819999810476
Q 004581          203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       203 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                      +.+|+.........+..|...+.++.++++++.+++++.|+.+++|++..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY  134 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCE
T ss_conf             0111001111111100000000000016998557765267523575114430

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-43  Score=263.07  Aligned_cols=346  Identities=11%  Similarity=0.038  Sum_probs=226.0

Q ss_pred             CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC--EEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEE
Q ss_conf             5748999971699989998289909999866893--59999814799888995259999990599-29998399979997
Q 004581          130 SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGY--EIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW  206 (744)
Q Consensus       130 ~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iw  206 (744)
                      ..+|+|++|+|||++||+++.|+.|++||..+++  .+..+.        +|...|.+++|+|++ +|++++.|+.|++|
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~--------gH~~~V~~l~fsp~~~~l~s~s~D~~i~vW   78 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------EHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   78 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC--------CCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf             988389999899999999948898999988899789999955--------889988899997999999999799939998


Q ss_pred             ECCCCCEE--EEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCE
Q ss_conf             29986248--9862166532599984899979954379819999810476899988876433111899963231058612
Q 004581          207 DSRHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVR  284 (744)
Q Consensus       207 d~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  284 (744)
                      |+.++...  ..+..|...|.+++|+|+++.|++++.|+.+++|+.....             ..+........|...|.
T Consensus        79 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~-------------~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN-------------DWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT-------------TEEEEEEECTTCCSCEE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCC-------------CCCCCCCCCCCCCCCCC
T ss_conf             62033211001223221100011111112110000025763025442033-------------43311100101112221


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             34430357789999833111247988775444332135897399986389809997467657778865579998884000
Q 004581          285 ALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHL  364 (744)
Q Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (744)
                      +++|+         |+++                        +|++++.|+.+++|+.............          
T Consensus       146 ~v~~~---------p~~~------------------------~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------  182 (371)
T d1k8kc_         146 SLDWH---------PNSV------------------------LLAAGSCDFKCRIFSAYIKEVEERPAPT----------  182 (371)
T ss_dssp             EEEEC---------TTSS------------------------EEEEEETTSCEEEEECCCTTTSCCCCCB----------
T ss_pred             CCCCC---------CCCC------------------------CEECCCCCCEEEEEEECCCCCCCCCCCC----------
T ss_conf             11111---------1111------------------------1000134767999840157643100122----------


Q ss_pred             CCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEE-ECCCCEEE
Q ss_conf             12213317738999928947999710357745678998878751289998349977499997079999999-83981299
Q 004581          365 VHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHVKPSL  443 (744)
Q Consensus       365 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~i  443 (744)
                      .... ..+.                                  ..+......+...+.+++|+|+++++++ +.++.+++
T Consensus       183 ~~~~-~~~~----------------------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         183 PWGS-KMPF----------------------------------GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             TTBS-CCCT----------------------------------TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCC-CCCC----------------------------------EEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEE
T ss_conf             1111-1111----------------------------------0112440476674789875123321000014786058


Q ss_pred             EEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf             99622788972278621058834565218999108998999917991999994697112210568645566689999966
Q 004581          444 FELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPI  523 (744)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i  523 (744)
                      |++..   ...+     ..+..+..++.+++|+||+++|++|. |+.+.+|..........+.....        .....
T Consensus       228 wd~~~---~~~~-----~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  290 (371)
T d1k8kc_         228 ADADK---KMAV-----ATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLD--------VPKQS  290 (371)
T ss_dssp             EEGGG---TTEE-----EEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCC--------CC---
T ss_pred             EEEEC---CCCE-----EEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEEEEEEEC--------CCCCC
T ss_conf             86410---1210-----00001466520365469997999981-99267877608986288720206--------76542


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCC----CEEEEEECCCEEEEEECCCCC
Q ss_conf             79998779989999948982999998885147898067898636986549999----939999369839999968886
Q 004581          524 TKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNN----NVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       524 ~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~----~~l~~~~~d~~i~iwd~~~~~  597 (744)
                      .....+....+ .  ..+........  ......+...|...|+++++.+ .+    ..+++++.||.|++||+++.+
T Consensus       291 ~~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~H~~~I~~i~~~~-~~~~~~~~~~T~g~Dg~v~iW~~~~~~  362 (371)
T d1k8kc_         291 SQRGLTARERF-Q--NLDKKASSEGS--AAAGAGLDSLHKNSVSQISVLS-GGKAKCSQFCTTGMDGGMSIWDVRSLE  362 (371)
T ss_dssp             -----CHHHHH-H--HCCCCC-----------CCCSSSSSSCEEEEEEEE-STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             CCCCCCCEEEE-E--CCCCEEEEECC--CCCCCEECCCCCCCEEEEEEEC-CCCCCEEEEEEECCCCEEEEEECCCCH
T ss_conf             12462200168-5--06520587124--5566141255569889999948-998656799999189939999698684

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-43  Score=260.37  Aligned_cols=292  Identities=14%  Similarity=0.155  Sum_probs=219.1

Q ss_pred             CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEE
Q ss_conf             75574899997169998999828990999986689359999814799888995259999990599-29998399979997
Q 004581          128 RVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFW  206 (744)
Q Consensus       128 ~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iw  206 (744)
                      .+.+....++++|+|+.|+.+. ++.|.+|++.++.....+.        +|...|.+++|+|++ +|++|+.||.|++|
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~--------~H~~~v~~~~~sp~g~~latg~~dg~i~iw   85 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--------EHSHQTTVAKTSPSGYYCASGDVHGNVRIW   85 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEEC--------CCCCCEEEEEEECCCCEEECCCCCCEEEEE
T ss_conf             7788759999969989999996-9999999999996617974--------788888999994899967225567367466


Q ss_pred             ECCCCCEE--EEEECCCCCEEEEEECCCCCEEEEECC--CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf             29986248--986216653259998489997995437--98199998104768999888764331118999632310586
Q 004581          207 DSRHGTLL--QAHSFHKGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD  282 (744)
Q Consensus       207 d~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  282 (744)
                      |+..+...  ..+..|.+.|.+++|+|+++++++++.  +..+++|+......                 ...+.+|...
T Consensus        86 d~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~h~~~  148 (311)
T d1nr0a1          86 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-----------------NGNLTGQARA  148 (311)
T ss_dssp             ESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-----------------CBCCCCCSSC
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------------CCCCCCCCCC
T ss_conf             31011110000134335754332333111000111122111111111111111-----------------1111111111


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12344303577899998331112479887754443321358973999863898099974676577788655799988840
Q 004581          283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI  362 (744)
Q Consensus       283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  362 (744)
                      |++++|+         |++.                       ..+++++.|+.|++|+..+...               
T Consensus       149 v~~v~~~---------~~~~-----------------------~~l~sgs~d~~i~i~d~~~~~~---------------  181 (311)
T d1nr0a1         149 MNSVDFK---------PSRP-----------------------FRIISGSDDNTVAIFEGPPFKF---------------  181 (311)
T ss_dssp             EEEEEEC---------SSSS-----------------------CEEEEEETTSCEEEEETTTBEE---------------
T ss_pred             CCCCCCC---------CCCE-----------------------EEECCCCCCCCCCCCCCCCCCC---------------
T ss_conf             1111112---------1110-----------------------1200011221111111111111---------------


Q ss_pred             CCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCEE
Q ss_conf             00122133177389999289479997103577456789988787512899983499774999970799999998398129
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS  442 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~  442 (744)
                                                                     .                                
T Consensus       182 -----------------------------------------------~--------------------------------  182 (311)
T d1nr0a1         182 -----------------------------------------------K--------------------------------  182 (311)
T ss_dssp             -----------------------------------------------E--------------------------------
T ss_pred             -----------------------------------------------C--------------------------------
T ss_conf             -----------------------------------------------1--------------------------------


Q ss_pred             EEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99962278897227862105883456521899910899899991799199999469711221056864556668999996
Q 004581          443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP  522 (744)
Q Consensus       443 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (744)
                                        .....|...++++.|+|+++++++++.|+.|++|++.+++....+...    .....+|...
T Consensus       183 ------------------~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~----~~~~~~h~~~  240 (311)
T d1nr0a1         183 ------------------STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD----SLKNVAHSGS  240 (311)
T ss_dssp             ------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT----TSSSCSSSSC
T ss_pred             ------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCC
T ss_conf             ------------------111111111111234764221211111111100012446411222111----1111002465


Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECC
Q ss_conf             679998779989999948982999998885147898067898636986549999939999369839999968
Q 004581          523 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       523 i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~  594 (744)
                      |++++|+|++++|++++.||.|+|||++++++...+...+......+.+.+ +++.|++++.||.|++||.+
T Consensus       241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~-~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETT
T ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE-CCCEEEEEECCCEEEEEECC
T ss_conf             321024788999999937996999999999699999799986332999995-19999999899979999588

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-41  Score=251.70  Aligned_cols=292  Identities=17%  Similarity=0.224  Sum_probs=209.6

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             80538960148312599642699854431114554577633688999998767667799986000012324589699874
Q 004581           25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        25 ~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      .+..++|.||.+.|++++|+|++                                                  .+||+|+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~--------------------------------------------------~~l~sgs   74 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDS--------------------------------------------------RLLVSAS   74 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTS--------------------------------------------------SEEEEEE
T ss_pred             EEEEEEECCCCCCEEEEEECCCC--------------------------------------------------CEEEEEE
T ss_conf             06527988878988899998999--------------------------------------------------9999997


Q ss_pred             CCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE----EEEEEECCCCCCCCCC
Q ss_conf             497199999507983268401367557489999716999899982899099998668935----9999814799888995
Q 004581          105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYE----IYRITVGLGGLGSGPE  180 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~  180 (744)
                      .||.|+|||+.+++.+   ..+..|...|.+++|+|++.++++++.|+.+++|+......    ...+.        +|.
T Consensus        75 ~Dg~v~iWd~~~~~~~---~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~--------~~~  143 (340)
T d1tbga_          75 QDGKLIIWDSYTTNKV---HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA--------GHT  143 (340)
T ss_dssp             TTTEEEEEETTTTEEE---EEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC--------CCS
T ss_pred             CCCCEEEEECCCCEEE---EEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECC--------CCC
T ss_conf             8995556310210257---99724653377567601211443101332010133222212221110013--------542


Q ss_pred             EEEEEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf             25999999059929998399979997299862489862166532599984899979954379819999810476899988
Q 004581          181 LCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDG  260 (744)
Q Consensus       181 ~~v~~i~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  260 (744)
                      ..........+..+.....+.....+.............+...+....+.+.+..+++++.|+.+++|++....      
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~------  217 (340)
T d1tbga_         144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM------  217 (340)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCC------
T ss_conf             11011111111111111244543200123221111123310157630012442126876057369999999994------


Q ss_pred             CCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf             87643311189996323105861234430357789999833111247988775444332135897399986389809997
Q 004581          261 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY  340 (744)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~  340 (744)
                                 ....+.+|...|.+++++         |++.                        +|++++.|+.+++|
T Consensus       218 -----------~~~~~~~h~~~i~~v~~~---------p~~~------------------------~l~s~s~d~~i~~~  253 (340)
T d1tbga_         218 -----------CRQTFTGHESDINAICFF---------PNGN------------------------AFATGSDDATCRLF  253 (340)
T ss_dssp             -----------EEEEECCCSSCEEEEEEC---------TTSS------------------------EEEEEETTSCEEEE
T ss_pred             -----------EEEEEECCCCCEEEEEEC---------CCCC------------------------EEEEEECCCEEEEE
T ss_conf             -----------889995788985899997---------9989------------------------99999699969997


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             46765777886557999888400012213317738999928947999710357745678998878751289998349977
Q 004581          341 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK  420 (744)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (744)
                      +......                                                              +..        
T Consensus       254 ~~~~~~~--------------------------------------------------------------~~~--------  263 (340)
T d1tbga_         254 DLRADQE--------------------------------------------------------------LMT--------  263 (340)
T ss_dssp             ETTTTEE--------------------------------------------------------------EEE--------
T ss_pred             EECCCCC--------------------------------------------------------------CCC--------
T ss_conf             5212211--------------------------------------------------------------111--------


Q ss_pred             EEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCC
Q ss_conf             49999707999999983981299996227889722786210588345652189991089989999179919999946971
Q 004581          421 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       421 i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~  500 (744)
                                                              .....+...+.+++|+|++++|++++.||.|++||+.+++
T Consensus       264 ----------------------------------------~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         264 ----------------------------------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             ----------------------------------------ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             ----------------------------------------CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf             ----------------------------------------1122445745899998999999999797989999999993


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             122105686455666899999667999877998999994898299999
Q 004581          501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd  548 (744)
                      ++.++.+           |...|++++|+|++++|++++.||.|++||
T Consensus       304 ~~~~~~~-----------H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         304 RAGVLAG-----------HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECC-----------CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEECC-----------CCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             9899848-----------999789999908999999990699799859

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-41  Score=248.59  Aligned_cols=332  Identities=18%  Similarity=0.261  Sum_probs=220.3

Q ss_pred             EECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             97657805389601483125996426998544311145545776336889999987676677999860000123245896
Q 004581           20 WDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRR   99 (744)
Q Consensus        20 wd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (744)
                      |+..+.++..+|++|.+.|.+ +++++|                                                  ++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g--------------------------------------------------~~   29 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCG--------------------------------------------------NR   29 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEET--------------------------------------------------TE
T ss_pred             CCCCCCCCCEEECCCCCCEEE-EEEECC--------------------------------------------------CE
T ss_conf             989988758898886875099-999789--------------------------------------------------99


Q ss_pred             EEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCC
Q ss_conf             99874497199999507983268401367557489999716999899982899099998668935999981479988899
Q 004581          100 VALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGP  179 (744)
Q Consensus       100 la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  179 (744)
                      ||+|+.||.|+|||+.+++.+   +.+.+|.+.|.+++|+++  +|++++.|+.+++|+...........        .+
T Consensus        30 l~sgs~Dg~i~vWd~~~~~~~---~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~--------~~   96 (342)
T d2ovrb2          30 IVSGSDDNTLKVWSAVTGKCL---RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLY--------GH   96 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEE---EECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC--------CC
T ss_pred             EEEEECCCEEEEEECCCCCEE---EEEECCCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCCEECCC--------CC
T ss_conf             999918990999989999799---999488999899994798--63210000011111111000000012--------33


Q ss_pred             CEEEEEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf             52599999905992999839997999729986248986216653259998489997995437981999981047689998
Q 004581          180 ELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPND  259 (744)
Q Consensus       180 ~~~v~~i~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  259 (744)
                      ...+...... ...+..+..|+.+.+|+..+++....+..+.....  ...+....+++++.|+.+++|+.....     
T Consensus        97 ~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~~-----  168 (342)
T d2ovrb2          97 TSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETET-----  168 (342)
T ss_dssp             SSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGGTE-----
T ss_pred             CEEEEEEECC-CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCE--EECCCCCEEEEECCCCEEEEEECCCCE-----
T ss_conf             3047652024-65221234440378740355630011100111100--000133302433589869995252343-----


Q ss_pred             CCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE
Q ss_conf             88764331118999632310586123443035778999983311124798877544433213589739998638980999
Q 004581          260 GLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFA  339 (744)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~  339 (744)
                                  ....+.+|...+....+           +                        +..+++++.|+.|++
T Consensus       169 ------------~~~~~~~~~~~~~~~~~-----------~------------------------~~~l~s~~~dg~i~~  201 (342)
T d2ovrb2         169 ------------CLHTLQGHTNRVYSLQF-----------D------------------------GIHVVSGSLDTSIRV  201 (342)
T ss_dssp             ------------EEEEECCCSSCEEEEEE-----------C------------------------SSEEEEEETTSCEEE
T ss_pred             ------------EEEEECCCCCCCCCCCC-----------C------------------------CCEEEEEECCCEEEE
T ss_conf             ------------66787275444210068-----------9------------------------999999958993999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             74676577788655799988840001221331773899992894799971035774567899887875128999834997
Q 004581          340 YCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASR  419 (744)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (744)
                      |++.....                                                              +         
T Consensus       202 ~d~~~~~~--------------------------------------------------------------~---------  210 (342)
T d2ovrb2         202 WDVETGNC--------------------------------------------------------------I---------  210 (342)
T ss_dssp             EETTTCCE--------------------------------------------------------------E---------
T ss_pred             EECCCCEE--------------------------------------------------------------E---------
T ss_conf             52556536--------------------------------------------------------------5---------


Q ss_pred             CEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCC
Q ss_conf             74999970799999998398129999622788972278621058834565218999108998999917991999994697
Q 004581          420 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS  499 (744)
Q Consensus       420 ~i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~  499 (744)
                                                               .....|...+.++.+  ++++|++++.|+.|++|++...
T Consensus       211 -----------------------------------------~~~~~~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~~~~  247 (342)
T d2ovrb2         211 -----------------------------------------HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG  247 (342)
T ss_dssp             -----------------------------------------EEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             -----------------------------------------EEECCCCCCEEEEEC--CCCEEEEECCCCEEEEEECCCC
T ss_conf             -----------------------------------------674166532057706--8999999748988999865544


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC----CCCCCEEEEEECCCC
Q ss_conf             1122105686455666899999667999877998999994898299999888514789806----789863698654999
Q 004581          500 ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISR----LEGASVTAAGFPPQN  575 (744)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~l~~sp~d  575 (744)
                      +....+..+..        |...+.++.++  ++++++++.||.|++||+++++....+..    .|...|++++|+| +
T Consensus       248 ~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~  316 (342)
T d2ovrb2         248 QCLQTLQGPNK--------HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-T  316 (342)
T ss_dssp             CEEEEECSTTS--------CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-S
T ss_pred             CCCCCCCCCCE--------EEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC-C
T ss_conf             22111221000--------11010000137--9844999089989999999997989986234789889789999879-9


Q ss_pred             CCEEEEEECCCE----EEEEECCC
Q ss_conf             993999936983----99999688
Q 004581          576 NNVLIITTSSNQ----VYVFDVEA  595 (744)
Q Consensus       576 ~~~l~~~~~d~~----i~iwd~~~  595 (744)
                      +.+|++++.||+    |++||++.
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEECCCCCEEEEEEEECCC
T ss_conf             989999968999704899993899

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-42  Score=253.41  Aligned_cols=325  Identities=18%  Similarity=0.260  Sum_probs=191.1

Q ss_pred             ECCCCCCCCE-EEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCC
Q ss_conf             0136755748-999971699989998289909999866893599998147998889952599999905992999839997
Q 004581          124 RSLPRVSGRV-LSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS  202 (744)
Q Consensus       124 ~~l~~h~~~V-~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~dg~  202 (744)
                      .+|+||...| +|++|  ++++|+||+.||+|++||+.+++.+..+.        +|...|.+++|++++.|++++.|+.
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~--------~H~~~V~~l~~s~~~~l~s~s~D~~   75 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS--------GHDGGVWALKYAHGGILVSGSTDRT   75 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEEETTTEEEEEETTCC
T ss_pred             EEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEE--------CCCCCEEEEEECCCCEEEEEECCCC
T ss_conf             8889837886999998--89999999189909999899993999997--------8999889999869999999964524


Q ss_pred             EEEEECCCCCEEEEEECCC--CCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf             9997299862489862166--53259998489997995437981999981047689998887643311189996323105
Q 004581          203 VQFWDSRHGTLLQAHSFHK--GDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT  280 (744)
Q Consensus       203 i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  280 (744)
                      |++|+....+.........  .......+.+++..+++++.|+.|++|++.....                 .... ...
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~-----------------~~~~-~~~  137 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-----------------VPDH-GEE  137 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC----------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCE-----------------ECCC-CCC
T ss_conf             4321111111111110011111111111112322045543888689998567730-----------------0124-652


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             86123443035778999983311124798877544433213589739998638980999746765777886557999888
Q 004581          281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV  360 (744)
Q Consensus       281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  360 (744)
                      .........         +..                                ..                         
T Consensus       138 ~~~~~~~~~---------~~~--------------------------------~~-------------------------  151 (355)
T d1nexb2         138 HDYPLVFHT---------PEE--------------------------------NP-------------------------  151 (355)
T ss_dssp             -CCCEEESC---------TTT--------------------------------CT-------------------------
T ss_pred             CEECCCEEC---------CCC--------------------------------CC-------------------------
T ss_conf             000100000---------112--------------------------------34-------------------------


Q ss_pred             CCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEE-ECCC
Q ss_conf             400012213317738999928947999710357745678998878751289998349977499997079999999-8398
Q 004581          361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAY-SDHV  439 (744)
Q Consensus       361 ~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~-~~~~  439 (744)
                                                                      ........+...+.  .+.+++++++. ..++
T Consensus       152 ------------------------------------------------~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~  181 (355)
T d1nexb2         152 ------------------------------------------------YFVGVLRGHMASVR--TVSGHGNIVVSGSYDN  181 (355)
T ss_dssp             ------------------------------------------------TEEEEEECCSSCEE--EEEEETTEEEEEETTS
T ss_pred             ------------------------------------------------CEEEEEEECCCCCC--CCCCCCCEEEEECCCC
T ss_conf             ------------------------------------------------01210110022210--0002563344211442


Q ss_pred             CEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             12999962278897227862105883456521899910899899991799199999469711221056864556668999
Q 004581          440 KPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPS  519 (744)
Q Consensus       440 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  519 (744)
                      .+++|++..   ...+     .....+...+.++.|+|++.++++++.|+.|++|++.++..+..+.+           |
T Consensus       182 ~i~~~d~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----------h  242 (355)
T d1nexb2         182 TLIVWDVAQ---MKCL-----YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-----------H  242 (355)
T ss_dssp             CEEEEETTT---TEEE-----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC-----------C
T ss_pred             EEEEEECCC---CCCE-----EEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCC-----------C
T ss_conf             044430131---1000-----11000123321111112100210124563687630122111111111-----------1


Q ss_pred             CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEE-ECCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             996679998779989999948982999998885147898067898636986-5499999399993698399999688865
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAG-FPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       520 ~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~-~sp~d~~~l~~~~~d~~i~iwd~~~~~~  598 (744)
                      ...|+++++++  ++|++++.||.|++||+++.......   |...+..+. |++ ++.++ +++.|+.|++||++++++
T Consensus       243 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l-~~g~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         243 TALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYV-SDNIL-VSGSENQFNIYNLRSGKL  315 (355)
T ss_dssp             SSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEE---ECTTCCCCCEEEE-CSSEE-EEEETTEEEEEETTTCCB
T ss_pred             CCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEECCC---CCCCCEEEEEECC-CCCEE-EEEECCEEEEEECCCCCE
T ss_conf             11111112321--00333201111111111111100012---4688229999849-99899-998099799999999979


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             611001459746100149884679995799
Q 004581          599 GEWSMQHTFVLPRRYQEFPGEVIGLSFSPS  628 (744)
Q Consensus       599 ~~ws~~~~~~~~~~~~~~~~~v~~i~fspd  628 (744)
                      .          ...+.+|.++|.+++|+|+
T Consensus       316 ~----------~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         316 V----------HANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             C----------CSCTTTTCSEEEEEEEETT
T ss_pred             E----------EEEECCCCCCEEEEEECCC
T ss_conf             8----------8884589998999998399

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-42  Score=255.54  Aligned_cols=327  Identities=16%  Similarity=0.212  Sum_probs=231.7

Q ss_pred             CEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf             96998744971999995079832684013675574899997169998999828990999986689359999814799888
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ++||+|+.||.|+|||+.+++.+   ..+.+|.+.|++++|+|+ .+|++++.|+.|++|+.............      
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~~~~---~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~------   93 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINKKFL---LQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGH------   93 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEE---EEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             CEEEEEECCCEEEEEECCCCCEE---EEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCC------
T ss_conf             99999918990999989999399---999789998899998699-99999964524432111111111111001------


Q ss_pred             CCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCC
Q ss_conf             995259999990599-2999839997999729986248986216653259998489997995437981999981047689
Q 004581          178 GPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       178 ~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  256 (744)
                      .+........+.+++ .+++++.|+.|++|++.+............ .......+....       .             
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~-------------  152 (355)
T d1nexb2          94 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENP-------Y-------------  152 (355)
T ss_dssp             SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------C-CCEEESCTTTCT-------T-------------
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCE-ECCCEECCCCCC-------C-------------
T ss_conf             1111111111112322045543888689998567730012465200-010000011234-------0-------------


Q ss_pred             CCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCE
Q ss_conf             99888764331118999632310586123443035778999983311124798877544433213589739998638980
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTK  336 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~  336 (744)
                                     .......|...+.....           ++                        ..++++..|+.
T Consensus       153 ---------------~~~~~~~~~~~v~~~~~-----------~~------------------------~~~~~~~~d~~  182 (355)
T d1nexb2         153 ---------------FVGVLRGHMASVRTVSG-----------HG------------------------NIVVSGSYDNT  182 (355)
T ss_dssp             ---------------EEEEEECCSSCEEEEEE-----------ET------------------------TEEEEEETTSC
T ss_pred             ---------------EEEEEEECCCCCCCCCC-----------CC------------------------CEEEEECCCCE
T ss_conf             ---------------12101100222100002-----------56------------------------33442114420


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             99974676577788655799988840001221331773899992894799971035774567899887875128999834
Q 004581          337 LFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK  416 (744)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (744)
                      +++|+......                                                               ......
T Consensus       183 i~~~d~~~~~~---------------------------------------------------------------~~~~~~  199 (355)
T d1nexb2         183 LIVWDVAQMKC---------------------------------------------------------------LYILSG  199 (355)
T ss_dssp             EEEEETTTTEE---------------------------------------------------------------EEEECC
T ss_pred             EEEEECCCCCC---------------------------------------------------------------EEEEEC
T ss_conf             44430131100---------------------------------------------------------------011000


Q ss_pred             CCCCEEEEEECCCCCEEEE-ECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf             9977499997079999999-839812999962278897227862105883456521899910899899991799199999
Q 004581          417 ASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       417 ~~~~i~~~~~s~~g~~la~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d  495 (744)
                      +...+.++.+++++.++++ +.++.+++|+...   ...+     ..+..|...+.+++++  +++|++++.||.|++||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~-----~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN---GELM-----YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD  269 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT---CCEE-----EEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEE
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCEEEEEECCC---CCCC-----CCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCC
T ss_conf             123321111112100210124563687630122---1111-----1111111111111232--10033320111111111


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCEEE-EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             469711221056864556668999996679-9987799899999489829999988851478980678986369865499
Q 004581          496 VSSSELLHTFTPCREEHDREIQPSEPPITK-MFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQ  574 (744)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~  574 (744)
                      +.++.....  .           |...+.. ..++++++++++++ |+.|++||++++++.......|..+|++++|+| 
T Consensus       270 ~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-  334 (355)
T d1nexb2         270 ANDYSRKFS--Y-----------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-  334 (355)
T ss_dssp             TTTCCEEEE--E-----------ECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-
T ss_pred             CCCCCEECC--C-----------CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCEEEEEECC-
T ss_conf             111110001--2-----------4688229999849998999980-997999999999798888458999899999839-


Q ss_pred             CCCEEEEEECCCEEEEEECC
Q ss_conf             99939999369839999968
Q 004581          575 NNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       575 d~~~l~~~~~d~~i~iwd~~  594 (744)
                      + .++++++.||++++|.++
T Consensus       335 ~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         335 K-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             T-EEEEEEESSSCEEEEEEE
T ss_pred             C-EEEEEEECCCCEEEEEEE
T ss_conf             9-199999898909999995

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.9e-42  Score=253.16  Aligned_cols=288  Identities=14%  Similarity=0.162  Sum_probs=177.1

Q ss_pred             ECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCCE
Q ss_conf             01367557489999716999899982899099998668935999981479988899525999999059929998399979
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSV  203 (744)
Q Consensus       124 ~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~dg~i  203 (744)
                      +.+.||.+.|++++|+||+++|++|+.||.|++||+++++....+..       .|...|.+++|+|++.+++++.|+.+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~h~~~v~~v~~~~~g~~~~~~~d~~v   78 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-------VHATMITGIKTTSKGDLFTVSWDDHL   78 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-------SCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred             EECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-------CCCCCEEEEEEECCCEEECCCCEEEE
T ss_conf             68488887828999979999999990899299999999968899837-------88774899884033112102310268


Q ss_pred             EEEECCCCCE---EEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf             9972998624---8986216653259998489997995437981999981047689998887643311189996323105
Q 004581          204 QFWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHT  280 (744)
Q Consensus       204 ~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  280 (744)
                      ++|+......   ......+...+.++++++++..++++ .++.+.+|+.....                     .....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~~---------------------~~~~~  136 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKLT---------------------EVPIS  136 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEEE---------------------EEECS
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC---------------------CCCCC
T ss_conf             873167762011100011113443210011221111122-22222111111111---------------------10111


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             86123443035778999983311124798877544433213589739998638980999746765777886557999888
Q 004581          281 HDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRV  360 (744)
Q Consensus       281 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  360 (744)
                      ..+.+++++         |+++                        .+++++.|+.+++|++....              
T Consensus       137 ~~~~~~~~s---------~~~~------------------------~l~~g~~dg~i~~~d~~~~~--------------  169 (299)
T d1nr0a2         137 YNSSCVALS---------NDKQ------------------------FVAVGGQDSKVHVYKLSGAS--------------  169 (299)
T ss_dssp             SCEEEEEEC---------TTSC------------------------EEEEEETTSEEEEEEEETTE--------------
T ss_pred             CCCCCCCCC---------CCCC------------------------CCCCCCCCCCCCCCCCCCCC--------------
T ss_conf             123322111---------1111------------------------11111111111111111111--------------


Q ss_pred             CCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf             40001221331773899992894799971035774567899887875128999834997749999707999999983981
Q 004581          361 PIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVK  440 (744)
Q Consensus       361 ~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~  440 (744)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (299)
T d1nr0a2         170 --------------------------------------------------------------------------------  169 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             29999622788972278621058834565218999108998999917991999994697112210568645566689999
Q 004581          441 PSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSE  520 (744)
Q Consensus       441 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  520 (744)
                                  ..     ......|...+++++|+|++++|++++.|+.|++|++.++.........        ..|.
T Consensus       170 ------------~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--------~~h~  224 (299)
T d1nr0a2         170 ------------VS-----EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW--------TFHT  224 (299)
T ss_dssp             ------------EE-----EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC--------CCCS
T ss_pred             ------------CC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCC
T ss_conf             ------------11-----1111111111111111111111111111111111111111111111111--------1111


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE-EECC-CCCCEEEEEECCCCCCEEEEEECCCEEEEEECC
Q ss_conf             9667999877998999994898299999888514789-8067-898636986549999939999369839999968
Q 004581          521 PPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWF-ISRL-EGASVTAAGFPPQNNNVLIITTSSNQVYVFDVE  594 (744)
Q Consensus       521 ~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~  594 (744)
                      ..|++++|+|++++|++++.||.|++||+++...... .... +...+.++.|.  ++.+|++++.|+.|++||+.
T Consensus       225 ~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE--ETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEEC--CCCEEEEEECCCEEEEEECC
T ss_conf             111111246664513888289979999899997314898348988968999977--98999999289979999444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.6e-41  Score=246.47  Aligned_cols=296  Identities=11%  Similarity=0.112  Sum_probs=209.7

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             80538960148312599642699854431114554577633688999998767667799986000012324589699874
Q 004581           25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        25 ~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      |+..+++.||...|++++|+|++                                                  ++|++|+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg--------------------------------------------------~~l~s~s   31 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADG--------------------------------------------------KTLFSAD   31 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTS--------------------------------------------------SEEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEECCCC--------------------------------------------------CEEEEEC
T ss_conf             86136848888782899997999--------------------------------------------------9999990


Q ss_pred             CCCEEEEEEECCCCCEEEEECC-CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEE
Q ss_conf             4971999995079832684013-675574899997169998999828990999986689359999814799888995259
Q 004581          105 DDGCVRIYRITDSDELIYHRSL-PRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCI  183 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~l-~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  183 (744)
                      .||.|++||+.++..+   +.+ .+|...|++++|+|++++ ++++.|+.+++|+.........     ......+...+
T Consensus        32 ~Dg~v~vWd~~~~~~~---~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~-----~~~~~~~~~~~  102 (299)
T d1nr0a2          32 AEGHINSWDISTGISN---RVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSS-----KAVANKLSSQP  102 (299)
T ss_dssp             TTSCEEEEETTTCCEE---ECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTT-----SCCEEECSSCE
T ss_pred             CCCEEEEEECCCCCEE---EEECCCCCCCEEEEEEECCCEE-ECCCCEEEEEEECCCCCCCCCC-----CCCCCCCCCCC
T ss_conf             8992999999999688---9983788774899884033112-1023102688731677620111-----00011113443


Q ss_pred             EEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             99999059929998399979997299862489862166532599984899979954379819999810476899988876
Q 004581          184 WSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSS  263 (744)
Q Consensus       184 ~~i~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  263 (744)
                      .++.|++++.+++++.++.+.+|+..  +.....  ....+.+++|+|+++++++++.|+.+++|++.....        
T Consensus       103 ~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~--------  170 (299)
T d1nr0a2         103 LGLAVSADGDIAVAACYKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--------  170 (299)
T ss_dssp             EEEEECTTSSCEEEEESSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf             21001122111112222222111111--111101--111233221111111111111111111111111111--------


Q ss_pred             CCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECC
Q ss_conf             43311189996323105861234430357789999833111247988775444332135897399986389809997467
Q 004581          264 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN  343 (744)
Q Consensus       264 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~  343 (744)
                              .......|...|.+++++         |+++                        .+++++.|+.+++|+..
T Consensus       171 --------~~~~~~~~~~~i~~~~~~---------~~~~------------------------~l~~~~~d~~i~~~~~~  209 (299)
T d1nr0a2         171 --------SEVKTIVHPAEITSVAFS---------NNGA------------------------FLVATDQSRKVIPYSVA  209 (299)
T ss_dssp             --------EEEEEEECSSCEEEEEEC---------TTSS------------------------EEEEEETTSCEEEEEGG
T ss_pred             --------CCCCCCCCCCCCCCCCCC---------CCCC------------------------CCCCCCCCCCCCCCCCC
T ss_conf             --------111111111111111111---------1111------------------------11111111111111111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
Q ss_conf             65777886557999888400012213317738999928947999710357745678998878751289998349977499
Q 004581          344 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC  423 (744)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (744)
                      ......                                                                          
T Consensus       210 ~~~~~~--------------------------------------------------------------------------  215 (299)
T d1nr0a2         210 NNFELA--------------------------------------------------------------------------  215 (299)
T ss_dssp             GTTEES--------------------------------------------------------------------------
T ss_pred             CCCCCC--------------------------------------------------------------------------
T ss_conf             111111--------------------------------------------------------------------------


Q ss_pred             EEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf             99707999999983981299996227889722786210588345652189991089989999179919999946971122
Q 004581          424 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH  503 (744)
Q Consensus       424 ~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~  503 (744)
                                                         ....+..|...+++++|+|++++|++++.||.|++||+.++....
T Consensus       216 -----------------------------------~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         216 -----------------------------------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             -----------------------------------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred             -----------------------------------CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCE
T ss_conf             -----------------------------------111111111111111246664513888289979999899997314


Q ss_pred             EECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             10568645566689999966799987799899999489829999988
Q 004581          504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLE  550 (744)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~  550 (744)
                      .+.....        +...+..+.+ +++++|++++.|+.|++||+.
T Consensus       261 ~~~~~~~--------~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         261 IIIKGAH--------AMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEETTSS--------TTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEEECCC--------CCCCEEEEEE-CCCCEEEEEECCCEEEEEECC
T ss_conf             8983489--------8896899997-798999999289979999444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-38  Score=233.02  Aligned_cols=323  Identities=18%  Similarity=0.246  Sum_probs=227.5

Q ss_pred             EECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCC
Q ss_conf             40136755748999971699989998289909999866893599998147998889952599999905992999839997
Q 004581          123 HRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGS  202 (744)
Q Consensus       123 ~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~dg~  202 (744)
                      .+.|++|.+.|.+ +++++|++||||+.||+|++||+.+++++..+.        +|...|+++.|+++ .+++++.|+.
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~--------~h~~~V~~v~~~~~-~l~s~s~D~~   78 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV--------GHTGGVWSSQMRDN-IIISGSTDRT   78 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC--------CCSSCEEEEEEETT-EEEEEETTSC
T ss_pred             CEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEE--------CCCCCEEEEEECCC-CCCCCEECCC
T ss_conf             8898886875099-999789999999189909999899997999994--------88999899994798-6321000001


Q ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf             99972998624898621665325999848999799543798199998104768999888764331118999632310586
Q 004581          203 VQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHD  282 (744)
Q Consensus       203 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  282 (744)
                      +++|+............+...+......  ...+..+..|+.+.+|+......                 ...+..+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~-----------------~~~~~~~~~~  139 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-----------------LHVLMGHVAA  139 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE-----------------EEEEECCSSC
T ss_pred             CCCCCCCCCCCEECCCCCCEEEEEEECC--CCCCCCCCCCEEEEEEECCCCCC-----------------EEEEECCCCC
T ss_conf             1111111000000012333047652024--65221234440378740355630-----------------0111001111


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12344303577899998331112479887754443321358973999863898099974676577788655799988840
Q 004581          283 VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPAPQRVPI  362 (744)
Q Consensus       283 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  362 (744)
                      ......                                   ....++.++.|+.+++|+.....                
T Consensus       140 ~~~~~~-----------------------------------~~~~~~~~~~d~~i~~~d~~~~~----------------  168 (342)
T d2ovrb2         140 VRCVQY-----------------------------------DGRRVVSGAYDFMVKVWDPETET----------------  168 (342)
T ss_dssp             EEEEEE-----------------------------------CSSCEEEEETTSCEEEEEGGGTE----------------
T ss_pred             CEEECC-----------------------------------CCCEEEEECCCCEEEEEECCCCE----------------
T ss_conf             000001-----------------------------------33302433589869995252343----------------


Q ss_pred             CCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCEE
Q ss_conf             00122133177389999289479997103577456789988787512899983499774999970799999998398129
Q 004581          363 HLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYSDHVKPS  442 (744)
Q Consensus       363 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~~~~~i~  442 (744)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (342)
T d2ovrb2         169 --------------------------------------------------------------------------------  168 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99962278897227862105883456521899910899899991799199999469711221056864556668999996
Q 004581          443 LFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPP  522 (744)
Q Consensus       443 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (744)
                                 .+     ..+..+  ......+++++.++++++.||.|++||+..++.+..+..           |...
T Consensus       169 -----------~~-----~~~~~~--~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~-----------~~~~  219 (342)
T d2ovrb2         169 -----------CL-----HTLQGH--TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-----------HQSL  219 (342)
T ss_dssp             -----------EE-----EEECCC--SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC-----------CCSC
T ss_pred             -----------EE-----EEECCC--CCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECC-----------CCCC
T ss_conf             -----------66-----787275--444210068999999995899399952556536567416-----------6532


Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCC--CCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf             6799987799899999489829999988851478980678--98636986549999939999369839999968886561
Q 004581          523 ITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLE--GASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGE  600 (744)
Q Consensus       523 i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~~~  600 (744)
                      +.++.+++  ++|++++.|+.|++|++...+....+...+  ...+.++.++   ++++++++.||+|++||++++++..
T Consensus       220 v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         220 TSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             EEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEECCC--CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEE
T ss_conf             05770689--999997489889998655442211122100011010000137---9844999089989999999997989


Q ss_pred             CCCCCCCCCC-CCCCCCCCCEEEEEECCCCCCCEEEEECC------CEEEEEECCC
Q ss_conf             1001459746-10014988467999579999857999858------4499994899
Q 004581          601 WSMQHTFVLP-RRYQEFPGEVIGLSFSPSPSSSSVIIYSA------RAMCVIDFGR  649 (744)
Q Consensus       601 ws~~~~~~~~-~~~~~~~~~v~~i~fspdg~~~~~~~~~~------~~~~~~d~~~  649 (744)
                             .++ ....+|...|.+++|+|++.   +++.+.      ..+.+.|+..
T Consensus       295 -------~~~~~~~~~~~~~v~~v~~s~~~~---~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         295 -------NLVTLESGGSGGVVWRIRASNTKL---VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             -------EEEECTTGGGTCEEEEEEECSSEE---EEEEECSSSSSCCEEEEEECCC
T ss_pred             -------EEECCCCCCCCCCEEEEEECCCCC---EEEEEECCCCCEEEEEEEECCC
T ss_conf             -------986234789889789999879998---9999968999704899993899

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-38  Score=229.33  Aligned_cols=154  Identities=21%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             CEEEEEECCC-EEEEEEECCCCCEEEEECCCCC-CCCEEEEEEEC--CCCEEEEEECCCEEEEEECCCCCEEEEEEECCC
Q ss_conf             9699874497-1999995079832684013675-57489999716--999899982899099998668935999981479
Q 004581           98 RRVALACDDG-CVRIYRITDSDELIYHRSLPRV-SGRVLSVTWSA--DGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLG  173 (744)
Q Consensus        98 ~~la~~~~dg-~i~iwd~~~~~~~~~~~~l~~h-~~~V~~i~~s~--dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~  173 (744)
                      +.+|.++.+. .|+.|+...... .....+.+| ...|++++|+|  ++.+|++|+.||+|++||+..++....+.....
T Consensus        30 ~~la~~~~~~~~i~~~~~~~~~~-~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~  108 (325)
T d1pgua1          30 NAIAYPCGKSAFVRCLDDGDSKV-PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK  108 (325)
T ss_dssp             TEEEEEETTEEEEEECCSSCCSS-CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred             CEEEEEECCCEEEEEEECCCCCC-CCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf             99999969987999976888876-50289907899988999981179997999994899779854058862156510025


Q ss_pred             CCCCCCCEEEEEEEEECCC-EEEEEC--CCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCCCEEEEEE
Q ss_conf             9888995259999990599-299983--9997999729986248986216653259998489997-99543798199998
Q 004581          174 GLGSGPELCIWSLLSLRCG-TLVSAD--STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNR-VFSTGSDGQVILYK  249 (744)
Q Consensus       174 ~~~~~~~~~v~~i~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~~~~~dg~i~iw~  249 (744)
                      .....+...|.+++|++++ .+++++  .++.+.+|+.++++++..+.+|...|.+++|+|++.+ +++++.|+.+++|+
T Consensus       109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             41136567377999899988220100124404788850233110012001234321111234320688862111221111


Q ss_pred             CCC
Q ss_conf             104
Q 004581          250 ASC  252 (744)
Q Consensus       250 ~~~  252 (744)
                      ...
T Consensus       189 ~~~  191 (325)
T d1pgua1         189 GPP  191 (325)
T ss_dssp             TTT
T ss_pred             CCC
T ss_conf             221

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=217.08  Aligned_cols=313  Identities=10%  Similarity=0.052  Sum_probs=168.0

Q ss_pred             EEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC--EEEEECC
Q ss_conf             84013675574899997169998999828990999986689359999814799888995259999990599--2999839
Q 004581          122 YHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG--TLVSADS  199 (744)
Q Consensus       122 ~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~l~s~~~  199 (744)
                      ..+...+|++.|++++|+|++++||+++.||+|++||+.++.....+....     +|...|.+++|++++  .+++|+.
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~-----~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----RYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-----ECSSCEEEEEEEESSSEEEEEEET
T ss_pred             EEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEC-----CCCCCEEEEEEECCCCCEEEECCC
T ss_conf             597688998978889995899999999799929999756998636898855-----899988999995899978998126


Q ss_pred             CCCEEEEECCCCCEEEEEECCCCCE-EEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             9979997299862489862166532-599984899979954379819999810476899988876433111899963231
Q 004581          200 TGSVQFWDSRHGTLLQAHSFHKGDV-NALAAAPSHNRVFSTGSDGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA  278 (744)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (744)
                      |+.|++|+...+........+.... ....+.++...+++++.|+.+++|+++.....             .........
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~-------------~~~~~~~~~  144 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-------------VIAVKNLNS  144 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-------------CEEEEESCS
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-------------EEEECCCCC
T ss_conf             5311454204432000001111111111111111111111012221110202344433-------------023000243


Q ss_pred             CCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             0586--12344303577899998331112479887754443321358973999863898099974676577788655799
Q 004581          279 HTHD--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEICPA  356 (744)
Q Consensus       279 h~~~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~  356 (744)
                      +...  .....+.                                 .....+++++.|+.+++|++..........    
T Consensus       145 ~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~----  187 (342)
T d1yfqa_         145 NNTKVKNKIFTMD---------------------------------TNSSRLIVGMNNSQVQWFRLPLCEDDNGTI----  187 (342)
T ss_dssp             SSSSSCCCEEEEE---------------------------------ECSSEEEEEESTTEEEEEESSCCTTCCCEE----
T ss_pred             CCCCCEEEEEEEE---------------------------------CCCCCEEEECCCCCEEEEECCCCCCCCEEE----
T ss_conf             0012000001000---------------------------------168702465179847887605676341112----


Q ss_pred             CCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf             98884000122133177389999289479997103577456789988787512899983499774999970799999998
Q 004581          357 PQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS  436 (744)
Q Consensus       357 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~  436 (744)
                                                                              ..........+..+          
T Consensus       188 --------------------------------------------------------~~~~~~~~~~~~~~----------  201 (342)
T d1yfqa_         188 --------------------------------------------------------EESGLKYQIRDVAL----------  201 (342)
T ss_dssp             --------------------------------------------------------EECSCSSCEEEEEE----------
T ss_pred             --------------------------------------------------------EECCCCCCEEEEEE----------
T ss_conf             --------------------------------------------------------10254221014676----------


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCC
Q ss_conf             3981299996227889722786210588345652189991089989999179919999946971122105686----455
Q 004581          437 DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCR----EEH  512 (744)
Q Consensus       437 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~  512 (744)
                                                            +..++..+++++.||.+.+|+..............    ...
T Consensus       202 --------------------------------------~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T d1yfqa_         202 --------------------------------------LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             --------------------------------------CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             --------------------------------------ECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEE
T ss_conf             --------------------------------------369998788654899599998059864011123512565553


Q ss_pred             CCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEE
Q ss_conf             66689999966799987799899999489829999988851478980678986369865499999399993698399999
Q 004581          513 DREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFD  592 (744)
Q Consensus       513 ~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd  592 (744)
                      ......|...+++++|+|++++||+++.||.|++||+++.+....+...+  .+..++|+| ++++|++++.|+.+++|.
T Consensus       244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~-~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIAC-SDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEE-CSSEEEEEEECTHHHHCS
T ss_pred             CCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC--CCEEEEEEE-CCCEEEEEECCCCEEEEE
T ss_conf             14777623543159966984479998799989999999894988705899--987999994-799999999199278830


Q ss_pred             CCCC
Q ss_conf             6888
Q 004581          593 VEAK  596 (744)
Q Consensus       593 ~~~~  596 (744)
                      ....
T Consensus       321 ~~~~  324 (342)
T d1yfqa_         321 AIDQ  324 (342)
T ss_dssp             SSCT
T ss_pred             EECC
T ss_conf             1278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-36  Score=220.74  Aligned_cols=315  Identities=12%  Similarity=0.036  Sum_probs=221.4

Q ss_pred             CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             05389601483125996426998544311145545776336889999987676677999860000123245896998744
Q 004581           26 KQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACD  105 (744)
Q Consensus        26 ~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  105 (744)
                      +.+...++|...|++|+|+|++                                                  ++||+|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~--------------------------------------------------~~L~s~s~   31 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSK--------------------------------------------------SLLLITSW   31 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGG--------------------------------------------------TEEEEEET
T ss_pred             CEEECCCCCCCCEEEEEEECCC--------------------------------------------------CEEEEEEC
T ss_conf             7597688998978889995899--------------------------------------------------99999979


Q ss_pred             CCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCC-CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEE
Q ss_conf             9719999950798326840136755748999971699-989998289909999866893599998147998889952599
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADG-NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW  184 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (744)
                      ||+|+|||+..+..........+|.++|.+++|+|++ .+|++|+.|+.|++|++..+........       .+.....
T Consensus        32 Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~-------~~~~~~~  104 (342)
T d1yfqa_          32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-------NEANLGI  104 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS-------CCCCSCE
T ss_pred             CCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCC-------CCCCCCC
T ss_conf             992999975699863689885589998899999589997899812653114542044320000011-------1111111


Q ss_pred             EEEEECCC-EEEEECCCCCEEEEECCCCCEE----EEEECC--CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf             99990599-2999839997999729986248----986216--6532599984899979954379819999810476899
Q 004581          185 SLLSLRCG-TLVSADSTGSVQFWDSRHGTLL----QAHSFH--KGDVNALAAAPSHNRVFSTGSDGQVILYKASCESIGP  257 (744)
Q Consensus       185 ~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~h--~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  257 (744)
                      ...+.++. .+++++.++.+++||++.+...    .....+  ........+.+.+..+++++.|+.+++|++.......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  184 (342)
T d1yfqa_         105 CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN  184 (342)
T ss_dssp             EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             11111111111110122211102023444330230002430012000001000168702465179847887605676341


Q ss_pred             CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf             98887643311189996323105861234430357789999833111247988775444332135897399986389809
Q 004581          258 NDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKL  337 (744)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i  337 (744)
                      .              ......+...+.+....         +                       .....+++++.|+.+
T Consensus       185 ~--------------~~~~~~~~~~~~~~~~~---------~-----------------------~~~~~~~~~s~dg~~  218 (342)
T d1yfqa_         185 G--------------TIEESGLKYQIRDVALL---------P-----------------------KEQEGYACSSIDGRV  218 (342)
T ss_dssp             C--------------EEEECSCSSCEEEEEEC---------S-----------------------GGGCEEEEEETTSEE
T ss_pred             E--------------EEEECCCCCCEEEEEEE---------C-----------------------CCCCEEEEECCCCEE
T ss_conf             1--------------12102542210146763---------6-----------------------999878865489959


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             99746765777886557999888400012213317738999928947999710357745678998878751289998349
Q 004581          338 FAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKA  417 (744)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (744)
                      .+|+...........                                                        ......   
T Consensus       219 ~v~~~~~~~~~~~~~--------------------------------------------------------~~~~~~---  239 (342)
T d1yfqa_         219 AVEFFDDQGDDYNSS--------------------------------------------------------KRFAFR---  239 (342)
T ss_dssp             EEEECCTTCCSTTCT--------------------------------------------------------TCEEEE---
T ss_pred             EEEEECCCCCEEECC--------------------------------------------------------CCCEEE---
T ss_conf             999805986401112--------------------------------------------------------351256---


Q ss_pred             CCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf             97749999707999999983981299996227889722786210588345652189991089989999179919999946
Q 004581          418 SRKIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~  497 (744)
                              .                         ...     ......+...+++++|+|++++|++|+.||.|++||+.
T Consensus       240 --------~-------------------------~~~-----~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         240 --------C-------------------------HRL-----NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             --------C-------------------------CCC-----CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             --------E-------------------------EEE-----CCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf             --------5-------------------------553-----14777623543159966984479998799989999999


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             9711221056864556668999996679998779989999948982999998885
Q 004581          498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQ  552 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~  552 (744)
                      +++.+.++..            ...+..++|+|++++|++++.|+.+++|.....
T Consensus       282 ~~~~l~~~~~------------~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~  324 (342)
T d1yfqa_         282 TRKKIKNFAK------------FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ  324 (342)
T ss_dssp             TTEEEEECCC------------CSSSEEEEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred             CCCEEEEECC------------CCCCEEEEEEECCCEEEEEECCCCEEEEEEECC
T ss_conf             8949887058------------999879999947999999991992788301278

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=5.4e-35  Score=213.09  Aligned_cols=356  Identities=12%  Similarity=0.040  Sum_probs=235.7

Q ss_pred             EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             58733997089997657805389601483125996426998544311145545776336889999987676677999860
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD   87 (744)
Q Consensus         8 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (744)
                      +++.+.+|.|.+||..+++++.++..+ ..+..++|||||                                        
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG----------------------------------------   73 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG----------------------------------------   73 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS----------------------------------------
T ss_pred             EEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCC----------------------------------------
T ss_conf             999769997999989998399997379-971379988999----------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEEECCCCCE--EEEECCCCCCCCEEEEEEECCCCEE-EEEECCCEEEEEECCCCCE
Q ss_conf             000123245896998744971999995079832--6840136755748999971699989-9982899099998668935
Q 004581           88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDEL--IYHRSLPRVSGRVLSVTWSADGNML-YSGSSDGYIRSWDAKLGYE  164 (744)
Q Consensus        88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~V~~i~~s~dg~~l-~t~~~dg~i~iwd~~~~~~  164 (744)
                                +++++++.|+.|++||+.+++..  .......+|.+.+.+.+|+|||++| +++..++.|++||..+++.
T Consensus        74 ----------~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          74 ----------RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             ----------CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             ----------CEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf             ----------9999982899978998108981288998448898776984321888888999817898279990765542


Q ss_pred             EEEEEECCCCC---CCCCCEEEEEEEEECCC--EEEEECCCCCEEEEECCCCCEEEEEE-CCCCCEEEEEECCCCCEEEE
Q ss_conf             99998147998---88995259999990599--29998399979997299862489862-16653259998489997995
Q 004581          165 IYRITVGLGGL---GSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLLQAHS-FHKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       165 ~~~~~~~~~~~---~~~~~~~v~~i~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~~  238 (744)
                      +..+.......   ..........+.+++++  .+++...++.|.+|+..+.+...... .+...+..++|+|+++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred             EEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEE
T ss_conf             25402477643522016888505899878999899998168829999843787522799833675426538898879999


Q ss_pred             ECC-CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEE-----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             437-9819999810476899988876433111899963231-----0586123443035778999983311124798877
Q 004581          239 TGS-DGQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVRA-----HTHDVRALTVAVPISREDPLPEDKVKRSRGREKP  312 (744)
Q Consensus       239 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (744)
                      ++. ++.+.+++......                 ......     |.........          +             
T Consensus       224 a~~~~~~v~v~d~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~----------~-------------  263 (432)
T d1qksa2         224 AANARNKLVVIDTKEGKL-----------------VAIEDTGGQTPHPGRGANFVH----------P-------------  263 (432)
T ss_dssp             EEGGGTEEEEEETTTTEE-----------------EEEEECSSSSBCCTTCEEEEE----------T-------------
T ss_pred             ECCCCCEEEEEECCCCEE-----------------EEEECCCCCCCCCCCCCCEEC----------C-------------
T ss_conf             516663677761445268-----------------887214862245676641014----------8-------------


Q ss_pred             CCCCCCCCCCCCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEEC
Q ss_conf             54443321358973999863-89809997467657778865579998884000122133177389999289479997103
Q 004581          313 IDFSYHKWAHLGVPMLISAG-DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRL  391 (744)
Q Consensus       313 ~~~~~~~w~~~~~~~l~s~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~  391 (744)
                                ..+....+.. .++.+.+|.......                                            
T Consensus       264 ----------~~g~~~~~~~lg~~~v~~~~~~~~~~--------------------------------------------  289 (432)
T d1qksa2         264 ----------TFGPVWATSHMGDDSVALIGTDPEGH--------------------------------------------  289 (432)
T ss_dssp             ----------TTEEEEEEEBSSSSEEEEEECCTTTC--------------------------------------------
T ss_pred             ----------CCCCEECCCCCCCCEEEECCCCCCCC--------------------------------------------
T ss_conf             ----------98831021356883587624566555--------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-CCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             577456789988787512899983499774999970799999998-3981299996227889722786210588345652
Q 004581          392 ENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFA  470 (744)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v  470 (744)
                                             ..+...+....+++++..++++ .++..++|....              +..+....
T Consensus       290 -----------------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~--------------~~~~~~~~  332 (432)
T d1qksa2         290 -----------------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT--------------LNPEAEIS  332 (432)
T ss_dssp             -----------------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT--------------TCSSHHHH
T ss_pred             -----------------------CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCC--------------CCCCCCEE
T ss_conf             -----------------------46565777998868997688872688641021126--------------78887703


Q ss_pred             CEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE-----CCCCEE
Q ss_conf             189991089989999179919999946971122105686455666899999667999877998999994-----898299
Q 004581          471 HSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVN-----CFGDVY  545 (744)
Q Consensus       471 ~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~-----~dg~i~  545 (744)
                      ..+++ ||++.+++++.|+.+++|++.++..+   ..           |...+.+++|||||++++.+.     .+|.|.
T Consensus       333 ~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~-----------~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~  397 (432)
T d1qksa2         333 GSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TE-----------GQPRVVQGEFNKDGTEVWFSVWNGKDQESALV  397 (432)
T ss_dssp             TCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CS-----------SCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred             EEEEE-EECHHHCCCCCCCCEEECCCCCCCCC---CC-----------CCCCEEEEEECCCCCEEEEEEECCCCCCCCEE
T ss_conf             59999-96246104556784486334344445---78-----------99868976798999999999704888888689


Q ss_pred             EEECCCCCEEEEEEC
Q ss_conf             999888514789806
Q 004581          546 IFNLEIQRQHWFISR  560 (744)
Q Consensus       546 iwd~~~~~~~~~~~~  560 (744)
                      |||..+.+....+..
T Consensus       398 i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         398 VVDDKTLELKHVIKD  412 (432)
T ss_dssp             EEETTTTEEEEEECC
T ss_pred             EEECCCCEEEEEECC
T ss_conf             999999558868468

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=6.2e-37  Score=224.26  Aligned_cols=131  Identities=10%  Similarity=0.046  Sum_probs=62.7

Q ss_pred             EEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf             19999950798326840136755748999971699989998289909999866893599998147998889952599999
Q 004581          108 CVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL  187 (744)
Q Consensus       108 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  187 (744)
                      .|++|+..+++.    +.+..|...|.+++|+|||++|++++.++.+++|++.+++....+.        .+...+.+++
T Consensus        67 ~v~v~d~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  134 (360)
T d1k32a3          67 FLGIYDYRTGKA----EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--------SREAMITDFT  134 (360)
T ss_dssp             EEEEEETTTCCE----EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------CSSSCCCCEE
T ss_pred             EEEEEECCCCCE----EEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEE--------CCCCCCCCHH
T ss_conf             999998999948----8750897127741211454321000111110000012221000000--------1355202301


Q ss_pred             EECCC-EEEEE----------CCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
Q ss_conf             90599-29998----------399979997299862489862166532599984899979954379819999810
Q 004581          188 SLRCG-TLVSA----------DSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       188 ~~~~~-~l~s~----------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                      |+|++ +|+.+          ..++.+++|+..+++... +..+...+.+++|+|+|++|++++.++.+.+|+..
T Consensus       135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             HCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEE-ECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCC
T ss_conf             213225665212331211000256542663045571353-03543221100125779999999599855753335

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-34  Score=208.10  Aligned_cols=286  Identities=16%  Similarity=0.222  Sum_probs=196.2

Q ss_pred             CCEEEEEEECCCCEEEEEECCC-EEEEEECCCC--CEEEEEEECCCCCCCCC-CEEEEEEEEECC--C-EEEEECCCCCE
Q ss_conf             7489999716999899982899-0999986689--35999981479988899-525999999059--9-29998399979
Q 004581          131 GRVLSVTWSADGNMLYSGSSDG-YIRSWDAKLG--YEIYRITVGLGGLGSGP-ELCIWSLLSLRC--G-TLVSADSTGSV  203 (744)
Q Consensus       131 ~~V~~i~~s~dg~~l~t~~~dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~--~-~l~s~~~dg~i  203 (744)
                      +.+++++|+|+++.|+.++.+. .|+.|+....  .....+.        +| ...|++++|+|+  + +|++|+.||+|
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~--------gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i   89 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT--------GHGSSVVTTVKFSPIKGSQYLCSGDESGKV   89 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC--------TTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEE--------CCCCCCEEEEEEEECCCCCEEEEEECCCCE
T ss_conf             984799998997999999699879999768888765028990--------789998899998117999799999489977


Q ss_pred             EEEECCCCCEE--------EEEECCCCCEEEEEECCCCCEEEEECC--CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             99729986248--------986216653259998489997995437--98199998104768999888764331118999
Q 004581          204 QFWDSRHGTLL--------QAHSFHKGDVNALAAAPSHNRVFSTGS--DGQVILYKASCESIGPNDGLSSSEVIKKWIYV  273 (744)
Q Consensus       204 ~iwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  273 (744)
                      ++||+..++..        ..+..|.++|.+++|++++.++++++.  ++.+.+|+...+.                 .+
T Consensus        90 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~  152 (325)
T d1pgua1          90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-----------------SL  152 (325)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-----------------EE
T ss_pred             EEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCC-----------------CC
T ss_conf             9854058862156510025411365673779998999882201001244047888502331-----------------10


Q ss_pred             EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf             63231058612344303577899998331112479887754443321358973999863898099974676577788655
Q 004581          274 GSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHEI  353 (744)
Q Consensus       274 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~  353 (744)
                      ..+.+|...|.+++|+         +++.                       ..+++++.|+.+++|+....+..     
T Consensus       153 ~~~~~h~~~v~~~~~~---------~~~~-----------------------~~~~~~~~d~~v~~~d~~~~~~~-----  195 (325)
T d1pgua1         153 GEVSGHSQRINACHLK---------QSRP-----------------------MRSMTVGDDGSVVFYQGPPFKFS-----  195 (325)
T ss_dssp             EECCSCSSCEEEEEEC---------SSSS-----------------------CEEEEEETTTEEEEEETTTBEEE-----
T ss_pred             EEEEECCCCCCCCCCC---------CCCC-----------------------CEEEEEECCCCCCCCCCCCCCCC-----
T ss_conf             0120012343211112---------3432-----------------------06888621112211112211000-----


Q ss_pred             CCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf             79998884000122133177389999289479997103577456789988787512899983499774999970799999
Q 004581          354 CPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIICSTISNSGMLF  433 (744)
Q Consensus       354 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  433 (744)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (325)
T d1pgua1         196 --------------------------------------------------------------------------------  195 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEC-CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCC
Q ss_conf             998398129999622788972278621058834565218999108-9989999179919999946971122105686455
Q 004581          434 AYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD-SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEH  512 (744)
Q Consensus       434 a~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  512 (744)
                                              ........+...+.+++|+|+ +.++++++.|+.|++||+.+++.+.++.+     
T Consensus       196 ------------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-----  246 (325)
T d1pgua1         196 ------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED-----  246 (325)
T ss_dssp             ------------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB-----
T ss_pred             ------------------------EECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCC-----
T ss_conf             ------------------------000001577775277630345310000112332101343001222111111-----


Q ss_pred             CCCCCCCCCCEEEEEEC---CCCCEEEEEECCCCEEEEECCCCCEEEEEECC-CCCCEEEEEECCCCCCEEEEEECCCEE
Q ss_conf             66689999966799987---79989999948982999998885147898067-898636986549999939999369839
Q 004581          513 DREIQPSEPPITKMFTS---SDGQWLAAVNCFGDVYIFNLEIQRQHWFISRL-EGASVTAAGFPPQNNNVLIITTSSNQV  588 (744)
Q Consensus       513 ~~~~~~~~~~i~~l~~s---~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~l~~sp~d~~~l~~~~~d~~i  588 (744)
                            |...+..+.|+   ||+++|++++.|+.|+|||+++++....+... +...+..+++.+..+.+|++++.||.|
T Consensus       247 ------~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i  320 (325)
T d1pgua1         247 ------DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL  320 (325)
T ss_dssp             ------TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCE
T ss_pred             ------CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEE
T ss_conf             ------11111110000003689999999589939999999997889999548740676999998899999999799999


Q ss_pred             EEEEC
Q ss_conf             99996
Q 004581          589 YVFDV  593 (744)
Q Consensus       589 ~iwd~  593 (744)
                      ++||+
T Consensus       321 ~vwdl  325 (325)
T d1pgua1         321 NFYEL  325 (325)
T ss_dssp             EEEET
T ss_pred             EEEEC
T ss_conf             99979

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-35  Score=212.19  Aligned_cols=114  Identities=10%  Similarity=0.085  Sum_probs=82.3

Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEE-ECCCCCCCCCCCCCCCCCEEEEEECCC----------CCEE
Q ss_conf             56521899910899899991799199999469711221-056864556668999996679998779----------9899
Q 004581          467 LQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSD----------GQWL  535 (744)
Q Consensus       467 ~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d----------g~~l  535 (744)
                      ...+++++|+|++.+|++++.||.|++||+.+++.... +..           |...|++++|+|+          +.+|
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-----------h~~~v~~~~~~p~~~~~~~~~~~~~~l  230 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-----------RTSKINAISWKPAEKGANEEEIEEDLV  230 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-----------CSSCEEEEEECCCC------CCSCCEE
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-----------CCCCCCEEEECCCCCCCCCCCCCCCEE
T ss_conf             785369995167652110111111000000233211000111-----------111110000013654100126788702


Q ss_pred             EEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEC
Q ss_conf             9994898299999888514789806789863698654999993999936983999996
Q 004581          536 AAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDV  593 (744)
Q Consensus       536 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~  593 (744)
                      |+++.|+.|++|+++...........|...|++++|+| ++ .|++++.|+.|++|++
T Consensus       231 ~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             EEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEEE
T ss_conf             76649995999888999758999278789858999989-99-8999979992999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-34  Score=208.89  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             CCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC---CEE
Q ss_conf             52189991089989999179919999946971122105686455666899999667999877998999994898---299
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFG---DVY  545 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg---~i~  545 (744)
                      .+.+++|+|++ +|++|+.|+.|++||+.+++.+..+...     ..+..|...|.+++|+|||++|++++.|+   .|+
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~-----~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ-----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  259 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCC-----CCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEE
T ss_conf             67899978999-8999938982999860233211000011-----11124256387700466532011242898842100


Q ss_pred             EEECCCCCEEEEEEC------------CCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999888514789806------------78986369865499999399993698399999688865611001459746100
Q 004581          546 IFNLEIQRQHWFISR------------LEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRY  613 (744)
Q Consensus       546 iwd~~~~~~~~~~~~------------~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~~~ws~~~~~~~~~~~  613 (744)
                      +||+++++....+..            .|...|++++|+| ++++|++++.|++|++||++++++           ...+
T Consensus       260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~-----------~~~l  327 (393)
T d1sq9a_         260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKER-----------ITTL  327 (393)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEE-----------EEEE
T ss_pred             ECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-CCCEEEEECCCCEEEEEECCCCCE-----------EEEE
T ss_conf             1035321344431156666431023202358666001389-888069877999899999999979-----------9999


Q ss_pred             CCCCCCEE----EEEECCCC
Q ss_conf             14988467----99957999
Q 004581          614 QEFPGEVI----GLSFSPSP  629 (744)
Q Consensus       614 ~~~~~~v~----~i~fspdg  629 (744)
                      .+|.+.|.    .++|+|+|
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~  347 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHG  347 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTS
T ss_pred             CCCCCCCCCCCCEEEECCCC
T ss_conf             88687613773489999999

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=7e-36  Score=218.20  Aligned_cols=181  Identities=10%  Similarity=0.041  Sum_probs=145.8

Q ss_pred             CEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCC--EEEEEECCCCCEEEEEEECCCCC
Q ss_conf             9699874497199999507983268401367557489999716999899982899--09999866893599998147998
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDG--YIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~  175 (744)
                      +++|+++ +|.|++|++.++...   + + +|...|.+++|+|||++|++++.+.  .|++||+++++.. .+.      
T Consensus        16 ~~~a~~~-~g~v~v~d~~~~~~~---~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~------   82 (360)
T d1k32a3          16 DLIAFVS-RGQAFIQDVSGTYVL---K-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE------   82 (360)
T ss_dssp             GCEEEEE-TTEEEEECTTSSBEE---E-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC------
T ss_pred             CEEEEEE-CCEEEEEECCCCCEE---E-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEE------
T ss_conf             9999998-996999989999489---9-1-6999888899989999999999289989999989999488-750------


Q ss_pred             CCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEE----------CCCCE
Q ss_conf             88995259999990599-29998399979997299862489862166532599984899979954----------37981
Q 004581          176 GSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFST----------GSDGQ  244 (744)
Q Consensus       176 ~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~----------~~dg~  244 (744)
                        .|...+.+++|+|++ +|++++.++.+++|+..+++....+..|...+.+++|+|+|++|+.+          ..++.
T Consensus        83 --~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          83 --ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             --CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             --CCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf             --897127741211454321000111110000012221000000135520230121322566521233121100025654


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99998104768999888764331118999632310586123443035778999983311124798877544433213589
Q 004581          245 VILYKASCESIGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLG  324 (744)
Q Consensus       245 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  324 (744)
                      +++|+...+.                  ...+..+...+..++++         |+++                      
T Consensus       161 ~~v~d~~~~~------------------~~~~~~~~~~~~~~~~s---------pdg~----------------------  191 (360)
T d1k32a3         161 IHVYDMEGRK------------------IFAATTENSHDYAPAFD---------ADSK----------------------  191 (360)
T ss_dssp             EEEEETTTTE------------------EEECSCSSSBEEEEEEC---------TTSC----------------------
T ss_pred             EEEECCCCCC------------------EEEECCCCCCCCCCCCC---------CCCC----------------------
T ss_conf             2663045571------------------35303543221100125---------7799----------------------


Q ss_pred             CCEEEEECCCCEEEEEECCC
Q ss_conf             73999863898099974676
Q 004581          325 VPMLISAGDDTKLFAYCANE  344 (744)
Q Consensus       325 ~~~l~s~~~d~~i~~~~~~~  344 (744)
                        .|++++.++.+.+|+...
T Consensus       192 --~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         192 --NLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             --EEEEEESCCCCCEECSSS
T ss_pred             --EEEEEECCCCEECCCCCC
T ss_conf             --999995998557533354

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.1e-34  Score=208.73  Aligned_cols=144  Identities=13%  Similarity=-0.028  Sum_probs=80.7

Q ss_pred             EEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf             69987449719999950798326840136755748999971699989998289909999866893599998147998889
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      ++++..+||.|+|||+.+++.+   .++..|. .+..++|||||++|++++.|++|++||+.+++..........   .+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~---~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~---~~  106 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIV---KVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---IE  106 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEE---EEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---SE
T ss_pred             EEEEECCCCEEEEEECCCCCEE---EEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECC---CC
T ss_conf             9999759997999999999599---9996899-803899989999999995899889997568860489998678---88


Q ss_pred             CCEEEEEEEEECCC-EE-EEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCCCEEEEEE
Q ss_conf             95259999990599-29-998399979997299862489862166532599984899979-9543798199998
Q 004581          179 PELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV-FSTGSDGQVILYK  249 (744)
Q Consensus       179 ~~~~v~~i~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~~~~~dg~i~iw~  249 (744)
                      |...+.++.|+||| ++ +++..++.+.+||..++.++..+..|...+...++.+++... +..+.|+...++.
T Consensus       107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEE
T ss_conf             76458850026889879996358976999857764125786226777364364278850389987878788885

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.8e-34  Score=208.23  Aligned_cols=196  Identities=10%  Similarity=-0.014  Sum_probs=118.3

Q ss_pred             EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             58733997089997657805389601483125996426998544311145545776336889999987676677999860
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD   87 (744)
Q Consensus         8 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (744)
                      +++...||+|++||+.+++++.++..| ..+..++|||||                                        
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDG----------------------------------------   73 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASG----------------------------------------   73 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTS----------------------------------------
T ss_pred             EEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCC----------------------------------------
T ss_conf             999759997999999999599999689-980389998999----------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEE--EEECCCCCCCCEEEEEEECCCCEEEEE-ECCCEEEEEECCCCCE
Q ss_conf             0001232458969987449719999950798326--840136755748999971699989998-2899099998668935
Q 004581           88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELI--YHRSLPRVSGRVLSVTWSADGNMLYSG-SSDGYIRSWDAKLGYE  164 (744)
Q Consensus        88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~V~~i~~s~dg~~l~t~-~~dg~i~iwd~~~~~~  164 (744)
                                +++++++.|+.|++||+.+++...  ......+|.+.+.+++|+|||++|+++ ..++.+++||..++..
T Consensus        74 ----------k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          74 ----------RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             ----------CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             ----------CEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
T ss_conf             ----------9999995899889997568860489998678887645885002688987999635897699985776412


Q ss_pred             EEEEEECCCCC---CCCCCEEEEEEEEECCC--EEEEECCCCCEEEEECCCCCEE-EEEECCCCCEEEEEECCCCCEEEE
Q ss_conf             99998147998---88995259999990599--2999839997999729986248-986216653259998489997995
Q 004581          165 IYRITVGLGGL---GSGPELCIWSLLSLRCG--TLVSADSTGSVQFWDSRHGTLL-QAHSFHKGDVNALAAAPSHNRVFS  238 (744)
Q Consensus       165 ~~~~~~~~~~~---~~~~~~~v~~i~~~~~~--~l~s~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~~  238 (744)
                      ...........   ...+......+.+++++  .+++....+.+.+++......+ .....+...+..++|+|+++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  223 (426)
T d1hzua2         144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT  223 (426)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCEEEE
T ss_conf             57862267773643642788503899878787888852789769999924665204577566775376137788867886


Q ss_pred             ECC-CCEEEEEECCCCC
Q ss_conf             437-9819999810476
Q 004581          239 TGS-DGQVILYKASCES  254 (744)
Q Consensus       239 ~~~-dg~i~iw~~~~~~  254 (744)
                      +.. +..+.+++.....
T Consensus       224 a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         224 AANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             EETTCSEEEEEETTTTE
T ss_pred             EEECCCCEEEEECCCCC
T ss_conf             42011000000025562

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=210.33  Aligned_cols=282  Identities=11%  Similarity=0.054  Sum_probs=180.7

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             80538960148312599642699854431114554577633688999998767667799986000012324589699874
Q 004581           25 LKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALAC  104 (744)
Q Consensus        25 ~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  104 (744)
                      .++++++++|..+|++++|+|                                                      |++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~------------------------------------------------------l~sgs   28 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP------------------------------------------------------LISGS   28 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT------------------------------------------------------TEEEE
T ss_pred             CCEEEEECCCCCCEEEEEECC------------------------------------------------------EEEEE
T ss_conf             603499988798649999895------------------------------------------------------78984


Q ss_pred             CCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEE
Q ss_conf             49719999950798326840136755748999971699989998289909999866893599998147998889952599
Q 004581          105 DDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIW  184 (744)
Q Consensus       105 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  184 (744)
                      .||.|++||+.+        ...+|...|.+++|+++ ..+++++.|+++++|++...               .....+.
T Consensus        29 ~Dg~v~~Wd~~~--------~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~---------------~~~~~~~   84 (287)
T d1pgua2          29 YDGRIMEWSSSS--------MHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKH---------------EFGSQPK   84 (287)
T ss_dssp             TTSCEEETTTTE--------EECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEE---------------ECSSCEE
T ss_pred             CCCEEEEEECCC--------CCCCCCCCEEEEEECCC-CEEEEEEECCCCCCCCCCCC---------------CCCCCEE
T ss_conf             899199998999--------88887787899996599-72898861012221111111---------------1122101


Q ss_pred             EEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCC-EEEEEECCCCCCCCCCCCCC
Q ss_conf             99990599299983999799972998624898621665325999848999799543798-19999810476899988876
Q 004581          185 SLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDG-QVILYKASCESIGPNDGLSS  263 (744)
Q Consensus       185 ~i~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~  263 (744)
                      .+.+.+++.++....++.+.+|+..++..+..+..+ ..+  .++++++..+++++.++ .+++|++.....        
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~--------  153 (287)
T d1pgua2          85 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEV--------  153 (287)
T ss_dssp             EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEE--------
T ss_pred             EEEECCCCCEEEEEECCCCEEEECCCEEEEEECCCC-CEE--EEEECCCCCEEEECCCCCEEEEEECCCCCE--------
T ss_conf             466416785699960332100001100354310122-203--565214751110002210002100012210--------


Q ss_pred             CCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECC
Q ss_conf             43311189996323105861234430357789999833111247988775444332135897399986389809997467
Q 004581          264 SEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCAN  343 (744)
Q Consensus       264 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~  343 (744)
                              .......|...+.+++|+         |++.                        +|++++.|+.|++|+..
T Consensus       154 --------~~~~~~~~~~~v~~~~~s---------~~~~------------------------~l~~g~~dg~i~i~d~~  192 (287)
T d1pgua2         154 --------SFDLKTPLRAKPSYISIS---------PSET------------------------YIAAGDVMGKILLYDLQ  192 (287)
T ss_dssp             --------EEECSSCCSSCEEEEEEC---------TTSS------------------------EEEEEETTSCEEEEETT
T ss_pred             --------EEEEEECCCCCEEEEEEC---------CCCC------------------------CCCCCCCCCCCCCEEEC
T ss_conf             --------001210247853699951---------6765------------------------21101111110000002


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
Q ss_conf             65777886557999888400012213317738999928947999710357745678998878751289998349977499
Q 004581          344 EFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRKIIC  423 (744)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  423 (744)
                      +....                                                              ......|...+.+
T Consensus       193 ~~~~~--------------------------------------------------------------~~~~~~h~~~v~~  210 (287)
T d1pgua2         193 SREVK--------------------------------------------------------------TSRWAFRTSKINA  210 (287)
T ss_dssp             TTEEE--------------------------------------------------------------ECCSCCCSSCEEE
T ss_pred             CCCCC--------------------------------------------------------------CCCCCCCCCCCCE
T ss_conf             33211--------------------------------------------------------------0001111111100


Q ss_pred             EEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCC-CCEE
Q ss_conf             997079999999839812999962278897227862105883456521899910899899991799199999469-7112
Q 004581          424 STISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSS-SELL  502 (744)
Q Consensus       424 ~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~-~~~~  502 (744)
                      ++|+|.+..                                       ...+.+++.++++|+.|+.|++|++.. .+.+
T Consensus       211 ~~~~p~~~~---------------------------------------~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~  251 (287)
T d1pgua2         211 ISWKPAEKG---------------------------------------ANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  251 (287)
T ss_dssp             EEECCCC---------------------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             EEECCCCCC---------------------------------------CCCCCCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf             000136541---------------------------------------00126788702766499959998889997589


Q ss_pred             EEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             21056864556668999996679998779989999948982999998
Q 004581          503 HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~  549 (744)
                      ..+.+           |...|++++|+|++ .|++++.|+.|++|++
T Consensus       252 ~~~~~-----------h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         252 KALNA-----------HKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETTS-----------STTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEECC-----------CCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf             99278-----------78985899998999-8999979992999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-33  Score=202.95  Aligned_cols=160  Identities=13%  Similarity=0.102  Sum_probs=121.9

Q ss_pred             CCCEEEEEECCCCCEEEE-ECCCCEEEEEEECCCCCCCEEEEEE-CCCCCCCCCCCEEEEEECCCEEEEEECCC---CEE
Q ss_conf             977499997079999999-8398129999622788972278621-05883456521899910899899991799---199
Q 004581          418 SRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINK-RQLPRKLQFAHSMIFSYDSSQLIIAGHDR---RIY  492 (744)
Q Consensus       418 ~~~i~~~~~s~~g~~la~-~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~spd~~~l~~~~~dg---~i~  492 (744)
                      ...+.+++|+|++ ++++ +.|+.|++|++..   ...+...+. ..+.+|...|++++|+||+++|++++.|+   .|+
T Consensus       184 ~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~---~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         184 SQFATSVDISERG-LIATGFNNGTVQISELST---LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  259 (393)
T ss_dssp             CCCCCEEEECTTS-EEEEECTTSEEEEEETTT---TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             CCCEEEEEECCCC-EEEEEECCCCEEEEEECC---CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEE
T ss_conf             9867899978999-899993898299986023---321100001111124256387700466532011242898842100


Q ss_pred             EEECCCCCEEEEECCCCCC--CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEE---
Q ss_conf             9994697112210568645--56668999996679998779989999948982999998885147898067898636---
Q 004581          493 VVDVSSSELLHTFTPCREE--HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT---  567 (744)
Q Consensus       493 i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---  567 (744)
                      +||+++++.+.++......  ....+.+|...|++++|+||+++|++++.|++|++||++++++..++.. |...|.   
T Consensus       260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g-H~~~v~~~~  338 (393)
T d1sq9a_         260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM-HCDDIEIEE  338 (393)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CGGGCSSGG
T ss_pred             ECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECC-CCCCCCCCC
T ss_conf             1035321344431156666431023202358666001389888069877999899999999979999988-687613773


Q ss_pred             -EEEECCCCCCEEEEEE
Q ss_conf             -9865499999399993
Q 004581          568 -AAGFPPQNNNVLIITT  583 (744)
Q Consensus       568 -~l~~sp~d~~~l~~~~  583 (744)
                       .++|+| ++..+++++
T Consensus       339 ~~~~~~~-~~~~~~~~~  354 (393)
T d1sq9a_         339 DILAVDE-HGDSLAEPG  354 (393)
T ss_dssp             GCCCBCT-TSCBCSSCC
T ss_pred             CEEEECC-CCCEEEECC
T ss_conf             4899999-999999831

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=199.11  Aligned_cols=117  Identities=19%  Similarity=0.281  Sum_probs=58.9

Q ss_pred             ECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCCE
Q ss_conf             01367557489999716999899982899099998668935999981479988899525999999059929998399979
Q 004581          124 RSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSV  203 (744)
Q Consensus       124 ~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~dg~i  203 (744)
                      +.+..|...|+|++|  |+++||||+.||+|++||+.+++++..+.        +|...|.++.|. +.+|++++.|+.|
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~--------~H~~~V~~v~~~-~~~l~s~s~D~~i   77 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT--------GHTGSVLCLQYD-ERVIITGSSDSTV   77 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC--------CCSSCEEEEECC-SSEEEEEETTSCE
T ss_pred             ECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEE--------CCCCCEEEEECC-CCEEECCCCCCCC
T ss_conf             432899998899987--69999999289939999999991999992--------677877634236-3002100111011


Q ss_pred             EEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC
Q ss_conf             99729986248986216653259998489997995437981999981047
Q 004581          204 QFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       204 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                      ++|++..+........+....  ..+.+....++++..++.+.+|+....
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP  125 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCEEEEECCCC
T ss_conf             000002464100111111000--011111100000135663068613445

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.6e-33  Score=204.58  Aligned_cols=348  Identities=13%  Similarity=0.042  Sum_probs=239.1

Q ss_pred             EEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE--EEEEECCCCCC
Q ss_conf             6998744971999995079832684013675574899997169998999828990999986689359--99981479988
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI--YRITVGLGGLG  176 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~  176 (744)
                      ++++.+.+|.|.|||..+++.+   ..+..+ ..+..++|||||+++++++.|+.+++||+.+++..  ..+...     
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~---~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-----  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIK---TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-----  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEE---EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-----
T ss_pred             EEEEECCCCEEEEEECCCCCEE---EEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECC-----
T ss_conf             9999769997999989998399---997379-9713799889999999982899978998108981288998448-----


Q ss_pred             CCCCEEEEEEEEECCC-E-EEEECCCCCEEEEECCCCCEEEEEECCC-----------CCEEEEEECCCCCEEE-EECCC
Q ss_conf             8995259999990599-2-9998399979997299862489862166-----------5325999848999799-54379
Q 004581          177 SGPELCIWSLLSLRCG-T-LVSADSTGSVQFWDSRHGTLLQAHSFHK-----------GDVNALAAAPSHNRVF-STGSD  242 (744)
Q Consensus       177 ~~~~~~v~~i~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~l~-~~~~d  242 (744)
                      .++...+++..|+||| + ++++..++.+++||..+++++..+..+.           .....+.+++++..++ +...+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf             89877698432188888899981789827999076554225402477643522016888505899878999899998168


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             81999981047689998887643311189996323-10586123443035778999983311124798877544433213
Q 004581          243 GQVILYKASCESIGPNDGLSSSEVIKKWIYVGSVR-AHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWA  321 (744)
Q Consensus       243 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  321 (744)
                      +.+.+|+......                 ..... .+......++++         |+++                   
T Consensus       185 ~~i~~~d~~~~~~-----------------~~~~~i~~g~~~~~~~~s---------pdg~-------------------  219 (432)
T d1qksa2         185 GKILLVDYTDLNN-----------------LKTTEISAERFLHDGGLD---------GSHR-------------------  219 (432)
T ss_dssp             TEEEEEETTCSSE-----------------EEEEEEECCSSEEEEEEC---------TTSC-------------------
T ss_pred             CEEEEEECCCCCC-----------------CEEEEECCCCCCCCCEEC---------CCCC-------------------
T ss_conf             8299998437875-----------------227998336754265388---------9887-------------------


Q ss_pred             CCCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCC
Q ss_conf             58973999863-89809997467657778865579998884000122133177389999289479997103577456789
Q 004581          322 HLGVPMLISAG-DDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSS  400 (744)
Q Consensus       322 ~~~~~~l~s~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~  400 (744)
                           ++++++ .+..+.+++........                                      .+.....      
T Consensus       220 -----~~~va~~~~~~v~v~d~~~~~~~~--------------------------------------~~~~g~~------  250 (432)
T d1qksa2         220 -----YFITAANARNKLVVIDTKEGKLVA--------------------------------------IEDTGGQ------  250 (432)
T ss_dssp             -----EEEEEEGGGTEEEEEETTTTEEEE--------------------------------------EEECSSS------
T ss_pred             -----EEEEECCCCCEEEEEECCCCEEEE--------------------------------------EECCCCC------
T ss_conf             -----999951666367776144526888--------------------------------------7214862------


Q ss_pred             CCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEE--CCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             988787512899983499774999970799999998--398129999622788972278621058834565218999108
Q 004581          401 SGGHASTSLLVQVKSKASRKIICSTISNSGMLFAYS--DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYD  478 (744)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~la~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd  478 (744)
                                    ..+............+...+..  .++.+.+|....            .....+...+....++|+
T Consensus       251 --------------~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~------------~~~~~~~~~v~~~~~~~~  304 (432)
T d1qksa2         251 --------------TPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP------------EGHPDNAWKILDSFPALG  304 (432)
T ss_dssp             --------------SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT------------TTCTTTBTSEEEEEECSC
T ss_pred             --------------CCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCC------------CCCCCCCCEEEEEEECCC
T ss_conf             --------------245676641014898831021356883587624566------------555465657779988689


Q ss_pred             CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             99899991799199999469711221056864556668999996679998779989999948982999998885147898
Q 004581          479 SSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFI  558 (744)
Q Consensus       479 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~  558 (744)
                      +..+++++.+...++|.......                 |.....++++ ||++.|++++.|+.+++|++.+...   +
T Consensus       305 g~~~~~~s~p~~~~lw~~~~~~~-----------------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l  363 (432)
T d1qksa2         305 GGSLFIKTHPNSQYLYVDATLNP-----------------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---I  363 (432)
T ss_dssp             SCCCCEECCTTCSEEEEECTTCS-----------------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---C
T ss_pred             CCEEEEEECCCCCCEEECCCCCC-----------------CCCEEEEEEE-EECHHHCCCCCCCCEEECCCCCCCC---C
T ss_conf             97688872688641021126788-----------------8770359999-9624610455678448633434444---5


Q ss_pred             ECCCCCCEEEEEECCCCCCEEEEEE-----CCCEEEEEECCCCCC
Q ss_conf             0678986369865499999399993-----698399999688865
Q 004581          559 SRLEGASVTAAGFPPQNNNVLIITT-----SSNQVYVFDVEAKQL  598 (744)
Q Consensus       559 ~~~~~~~v~~l~~sp~d~~~l~~~~-----~d~~i~iwd~~~~~~  598 (744)
                      .. |...+.+++|+| ||++++++.     .++.|.|||..++++
T Consensus       364 ~~-~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         364 TE-GQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             CS-SCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CC-CCCCEEEEEECC-CCCEEEEEEECCCCCCCCEEEEECCCCEE
T ss_conf             78-998689767989-99999999704888888689999999558

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-32  Score=196.30  Aligned_cols=179  Identities=19%  Similarity=0.334  Sum_probs=124.5

Q ss_pred             CEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf             96998744971999995079832684013675574899997169998999828990999986689359999814799888
Q 004581           98 RRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        98 ~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      ++||+|+.||.|+|||+.+++.+   +++.+|.+.|++++|  ++++|++++.|+.|++|++..+........       
T Consensus        26 ~~l~sgs~Dg~i~vWd~~~~~~~---~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~-------   93 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWDKNTLECK---RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-------   93 (293)
T ss_dssp             SEEEEEESSSCEEEEESSSCCEE---EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC-------
T ss_pred             CEEEEEECCCEEEEEECCCCCEE---EEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCC-------
T ss_conf             99999928993999999999199---999267787763423--630021001110110000024641001111-------


Q ss_pred             CCCEEEEEEEEECCCEEEEECCCCCEEEEECCCCCE---EEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCC
Q ss_conf             995259999990599299983999799972998624---89862166532599984899979954379819999810476
Q 004581          178 GPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTL---LQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASCES  254 (744)
Q Consensus       178 ~~~~~v~~i~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~~~  254 (744)
                       ..... .......+.++++..++.+.+|+......   ...+..|...+.++.+.+  ..+++++.|+.+++|+.....
T Consensus        94 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~  169 (293)
T d1p22a2          94 -HCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCE  169 (293)
T ss_dssp             -CCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCC
T ss_pred             -CCCCC-CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCCCEEEECCCCCC
T ss_conf             -11000-01111110000013566306861344544421210001135431100000--220110699860410078883


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             89998887643311189996323105861234430357789999833111247988775444332135897399986389
Q 004581          255 IGPNDGLSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDD  334 (744)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d  334 (744)
                                       .+..+.++...+..+.+.                                   +..+++++.|
T Consensus       170 -----------------~~~~~~~~~~~v~~~~~~-----------------------------------~~~l~~~~~d  197 (293)
T d1p22a2         170 -----------------FVRTLNGHKRGIACLQYR-----------------------------------DRLVVSGSSD  197 (293)
T ss_dssp             -----------------EEEEEECCSSCEEEEEEE-----------------------------------TTEEEEEETT
T ss_pred             -----------------EEEEECCCCCCCCCCCCC-----------------------------------CCEEEEECCC
T ss_conf             -----------------889971554453221689-----------------------------------8758876589


Q ss_pred             CEEEEEECCC
Q ss_conf             8099974676
Q 004581          335 TKLFAYCANE  344 (744)
Q Consensus       335 ~~i~~~~~~~  344 (744)
                      +.|++|++..
T Consensus       198 g~i~i~d~~~  207 (293)
T d1p22a2         198 NTIRLWDIEC  207 (293)
T ss_dssp             SCEEEEETTT
T ss_pred             CEEEEEECCC
T ss_conf             9899986655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=2.2e-27  Score=169.26  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             CCCEEEEEECCCCEEEEECCCCCEEEE-ECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf             899899991799199999469711221-0568645566689999966799987799899999489829999988851478
Q 004581          478 DSSQLIIAGHDRRIYVVDVSSSELLHT-FTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHW  556 (744)
Q Consensus       478 d~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~  556 (744)
                      ....++++..+..+.+|++.++..... +..           +...+..+.+++++.+++.... +.|.+||..+++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~  286 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIK  286 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCEEEEEECCCCCEEEEEEEC-----------CCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEE
T ss_conf             7325754047834999977788368787631-----------5660688897179978999429-838999899993999


Q ss_pred             EEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             980678986369865499999399993698399999688865
Q 004581          557 FISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       557 ~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~  598 (744)
                      .+...  ..+.+++|+| |+++|++++.|+.|++||+++++.
T Consensus       287 ~~~~~--~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         287 AANLD--HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             EEECS--SCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred             EECCC--CCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCE
T ss_conf             97499--9778999968-999999994899299999965879

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.5e-26  Score=163.23  Aligned_cols=147  Identities=12%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             EEEEEECCCEEEEEEECCCCCEEEEECCC--CCCCCEEEEEEECCCCEEE-EEECCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf             69987449719999950798326840136--7557489999716999899-98289909999866893599998147998
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLP--RVSGRVLSVTWSADGNMLY-SGSSDGYIRSWDAKLGYEIYRITVGLGGL  175 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~V~~i~~s~dg~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~  175 (744)
                      ++++++.|++|.+||+.+.+.+   ..+.  .+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+...... 
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~---~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~-   78 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVD---KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-   78 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEE---EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT-
T ss_pred             EEEEECCCCEEEEEECCCCEEE---EEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC-
T ss_conf             9999767998999999999499---999877889982379999998999999789994999999999298887247773-


Q ss_pred             CCCCCEEEEEEEEECCC-EEEEEC------------CCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCC
Q ss_conf             88995259999990599-299983------------99979997299862489862166532599984899979954379
Q 004581          176 GSGPELCIWSLLSLRCG-TLVSAD------------STGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSD  242 (744)
Q Consensus       176 ~~~~~~~v~~i~~~~~~-~l~s~~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~d  242 (744)
                        .+...+..++|+|++ .++++.            .+..+.+||..+++.+..+.. ...+.+++|+|++.++++++.+
T Consensus        79 --~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          79 --ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             --EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS
T ss_pred             --CCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECCC
T ss_conf             --1254025489868775799950477620342034555212035667759884145-6872189986888889997177


Q ss_pred             CEEEEEECCCCC
Q ss_conf             819999810476
Q 004581          243 GQVILYKASCES  254 (744)
Q Consensus       243 g~i~iw~~~~~~  254 (744)
                        +.+|+.....
T Consensus       156 --~~~~d~~~~~  165 (337)
T d1pbyb_         156 --LHVMDPEAGT  165 (337)
T ss_dssp             --EEEEETTTTE
T ss_pred             --CCEEEEECCC
T ss_conf             --5056630372

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=1.6e-24  Score=152.82  Aligned_cols=79  Identities=8%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCEEEEEECCCEEEEEEC---CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE-EEEECCCCEE
Q ss_conf             218999108998999917---991999994697112210568645566689999966799987799899-9994898299
Q 004581          470 AHSMIFSYDSSQLIIAGH---DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL-AAVNCFGDVY  545 (744)
Q Consensus       470 v~~i~~spd~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-as~~~dg~i~  545 (744)
                      +..++|++++..++++..   ++.|.+||+.+++.+..+..            ...+..++|||||++| +++..++.|.
T Consensus       202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~------------~~~~~~va~spdg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV------------GPDPAGIAVTPDGKKVYVALSFCNTVS  269 (301)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC------------CSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECC------------CCCEEEEEEECCCCEEEEEECCCCEEE
T ss_conf             50311011110111100210000232365699819999848------------998779999189899999989999699


Q ss_pred             EEECCCCCEEEEEEC
Q ss_conf             999888514789806
Q 004581          546 IFNLEIQRQHWFISR  560 (744)
Q Consensus       546 iwd~~~~~~~~~~~~  560 (744)
                      +||+++++....++.
T Consensus       270 v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         270 VIDTATNTITATMAV  284 (301)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCEEEEEEEC
T ss_conf             999999959999968

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=1.7e-24  Score=152.69  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             CEEEEEECCCCCEEEEEEC---CCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEE-EEECCCEEEEEECCCCC
Q ss_conf             6679998779989999948---9829999988851478980678986369865499999399-99369839999968886
Q 004581          522 PITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLI-ITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       522 ~i~~l~~s~dg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~-~~~~d~~i~iwd~~~~~  597 (744)
                      .+..++++++++.++.+..   ++.|++||+.+++....++.  ...+.+++|+| |+++|+ +++.|++|++||+++++
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~sp-dg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTP-DGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECC--CCCEEEEEEEC-CCCEEEEEECCCCEEEEEECCCCE
T ss_conf             750311011110111100210000232365699819999848--99877999918-989999998999969999999995

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.96  E-value=2.8e-27  Score=168.69  Aligned_cols=79  Identities=15%  Similarity=0.106  Sum_probs=53.3

Q ss_pred             CCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             52189991089989999179919999946971122105686455666899999667999877998999994898299999
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd  548 (744)
                      .+..+.+++++.+++.... +.|.+||..+++.+..+..            ...+.+++|||||++|++++.|+.|++||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~------------~~~~~~va~s~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         253 LYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             CEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC------------SSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             EEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECC------------CCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf             0688897179978999429-8389998999939999749------------99778999968999999994899299999


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             888514789806
Q 004581          549 LEIQRQHWFISR  560 (744)
Q Consensus       549 ~~~~~~~~~~~~  560 (744)
                      +++.+....+..
T Consensus       320 ~~t~~~i~~i~~  331 (346)
T d1jmxb_         320 PDTLEKVKNIKL  331 (346)
T ss_dssp             TTTTEEEEEEEC
T ss_pred             CCCCCEEEEEEC
T ss_conf             965879799988

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=4.1e-26  Score=161.99  Aligned_cols=151  Identities=15%  Similarity=0.108  Sum_probs=92.3

Q ss_pred             CEEEEECCCCEEEEEECCCCCEEEEEECC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             70587339970899976578053896014--8312599642699854431114554577633688999998767667799
Q 004581            6 GRLFSSSIDGSVSEWDLYDLKQKIVLQSI--DFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESEND   83 (744)
Q Consensus         6 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (744)
                      .++++++.|+.|.+||+++++++.++..+  ...+.+++|+|||+                                   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~-----------------------------------   46 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-----------------------------------   46 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS-----------------------------------
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCC-----------------------------------
T ss_conf             699997679989999999994999998778899823799999989-----------------------------------


Q ss_pred             CCCCCCCCCCCCCCCEE-EEEECCCEEEEEEECCCCCEEEEECCCCC-----CCCEEEEEEECCCCEEEEEE--------
Q ss_conf             98600001232458969-98744971999995079832684013675-----57489999716999899982--------
Q 004581           84 SDSDELHEQSVVEDRRV-ALACDDGCVRIYRITDSDELIYHRSLPRV-----SGRVLSVTWSADGNMLYSGS--------  149 (744)
Q Consensus        84 ~~~~~~~~~~~~~~~~l-a~~~~dg~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~i~~s~dg~~l~t~~--------  149 (744)
                                     ++ ++++.++.|.+||+.+++.+   ..+..+     ...+..++|+||+++++++.        
T Consensus        47 ---------------~l~v~~~~~~~v~v~D~~t~~~~---~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~  108 (337)
T d1pbyb_          47 ---------------IAYATVNKSESLVKIDLVTGETL---GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             ---------------EEEEEETTTTEEEEEETTTCCEE---EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             ---------------EEEEEECCCCEEEEEECCCCCEE---EEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf             ---------------99999789994999999999298---887247773125402548986877579995047762034


Q ss_pred             ----CCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECC
Q ss_conf             ----8990999986689359999814799888995259999990599-2999839997999729986248986216
Q 004581          150 ----SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRHGTLLQAHSFH  220 (744)
Q Consensus       150 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h  220 (744)
                          .+..+.+||..+++....+.         ....+..+.|++++ ++++++  +.+.+||..+++....+..+
T Consensus       109 ~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~  173 (337)
T d1pbyb_         109 HFEVQPTRVALYDAETLSRRKAFE---------APRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEE---------CCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECST
T ss_pred             ECCCCCCCEEECCCCCCEEEEECC---------CCCCCEEEEECCCCCEEEEEC--CCCCEEEEECCCEEEEEECC
T ss_conf             203455521203566775988414---------568721899868888899971--77505663037278886147

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.96  E-value=4.2e-23  Score=144.63  Aligned_cols=333  Identities=8%  Similarity=-0.055  Sum_probs=197.1

Q ss_pred             EECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf             60148312599642699854431114554577633688999998767667799986000012324589699874497199
Q 004581           31 LQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSDELHEQSVVEDRRVALACDDGCVR  110 (744)
Q Consensus        31 ~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~dg~i~  110 (744)
                      ...+.+++.+++++||++.++..                                             .-...+..+.|.
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~---------------------------------------------~~~~~~~~~~v~   50 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYIN---------------------------------------------LPAHHSAIIQQW   50 (373)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEE---------------------------------------------CCCCCCCCCEEE
T ss_conf             45678986563018999789997---------------------------------------------342257876599


Q ss_pred             EEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEE----------CCCEEEEEECCCCCEEEEEEECCCCCCCCCC
Q ss_conf             999507983268401367557489999716999899982----------8990999986689359999814799888995
Q 004581          111 IYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS----------SDGYIRSWDAKLGYEIYRITVGLGGLGSGPE  180 (744)
Q Consensus       111 iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  180 (744)
                      +||..+++.+   ..+..+..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+..... .-.
T Consensus        51 v~D~~tg~~~---~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-~~~  124 (373)
T d2madh_          51 VLDAGSGSIL---GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-DVG  124 (373)
T ss_pred             EEECCCCCEE---EEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEE-EEC
T ss_conf             9989999799---999579886--0798689998999960577532124531899997778938889726885136-851


Q ss_pred             EEEEEEEEECCC-E--EEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCCCEEEEEECCCCCCC
Q ss_conf             259999990599-2--9998399979997299862489862166532599984899979-95437981999981047689
Q 004581          181 LCIWSLLSLRCG-T--LVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRV-FSTGSDGQVILYKASCESIG  256 (744)
Q Consensus       181 ~~v~~i~~~~~~-~--l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~  256 (744)
                      .....+.|++++ .  +.....++.+.+|+....+.....    ....++.++++++.+ ++.+.|+.+.+|+...... 
T Consensus       125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~-  199 (373)
T d2madh_         125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA-  199 (373)
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-
T ss_conf             6897089985899379999869874677623687289982----45206999628991999994799399997477426-


Q ss_pred             CCCCCCCCCCCCEEEEEEEEEECCC----C--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             9988876433111899963231058----6--123443035778999983311124798877544433213589739998
Q 004581          257 PNDGLSSSEVIKKWIYVGSVRAHTH----D--VRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLIS  330 (744)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~h~~----~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s  330 (744)
                                      ......+..    .  ...+.+.                                  ....++.
T Consensus       200 ----------------~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~  229 (373)
T d2madh_         200 ----------------GAGLVGAMLTAAQNLLTQPAQAN----------------------------------KSGRIVW  229 (373)
T ss_pred             ----------------EEEEEEECCCCCCCCEEEEEEEC----------------------------------CCCEEEE
T ss_conf             ----------------67886300366753043458878----------------------------------9942999


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf             63898099974676577788655799988840001221331773899992894799971035774567899887875128
Q 004581          331 AGDDTKLFAYCANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLL  410 (744)
Q Consensus       331 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  410 (744)
                      .+.++.+.+|+........                           +       ..+..                     
T Consensus       230 ~~~~~~v~~~~~~~~~~~~---------------------------~-------~~~~~---------------------  254 (373)
T d2madh_         230 PVYSGKILQADISAAGATN---------------------------K-------APIDA---------------------  254 (373)
T ss_pred             ECCCCEEEEEECCCCEEEE---------------------------E-------EEECC---------------------
T ss_conf             2589659999768990789---------------------------7-------76305---------------------


Q ss_pred             EEEEECCCCCEEEEEECCCCCEEEE-ECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf             9998349977499997079999999-839812999962278897227862105883456521899910899899991799
Q 004581          411 VQVKSKASRKIICSTISNSGMLFAY-SDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDR  489 (744)
Q Consensus       411 ~~~~~~~~~~i~~~~~s~~g~~la~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg  489 (744)
                            .........+.|.+..... +.++                              -....+..++..++....++
T Consensus       255 ------~~~~~~~~~~~~~~~~~~~~~~d~------------------------------~~~~~~~~~~~~~~~~~~~~  298 (373)
T d2madh_         255 ------LSGGRKADTWRPGGWQQVAYLKSS------------------------------DGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             ------CCCCEEEEEECCCCCEEEEEECCC------------------------------CEEEEECCCCCEEEEECCCC
T ss_conf             ------647578664136741335771499------------------------------75999548882478625898


Q ss_pred             CEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCCCEEEEEECCCCCCEE
Q ss_conf             199999469711221056864556668999996679998779989--999948982999998885147898067898636
Q 004581          490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW--LAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT  567 (744)
Q Consensus       490 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~--las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  567 (744)
                      .+.+||..+++.+..+.            +...+..++|||||+.  +++++.|+.|++||+.+++....+.. ++..++
T Consensus       299 ~v~~~d~~t~~~~~~~~------------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~-~g~~P~  365 (373)
T d2madh_         299 EVTSVTGLVGQTSSQIS------------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE-LGSGPQ  365 (373)
T ss_pred             EEEEEECCCCCEEEEEC------------CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC-CCCCCC
T ss_conf             69999899996989866------------89982589999899989999967999299999999989999888-898981


Q ss_pred             EEEECC
Q ss_conf             986549
Q 004581          568 AAGFPP  573 (744)
Q Consensus       568 ~l~~sp  573 (744)
                      .+++.+
T Consensus       366 ~l~~~~  371 (373)
T d2madh_         366 VLSVMN  371 (373)
T ss_pred             EEEEEC
T ss_conf             899846

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.94  E-value=1.9e-22  Score=140.86  Aligned_cols=329  Identities=12%  Similarity=-0.021  Sum_probs=198.8

Q ss_pred             CCCCCCCEEEEEEECCCCEEEEEE-----CCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEEC-
Q ss_conf             367557489999716999899982-----8990999986689359999814799888995259999990599-299983-
Q 004581          126 LPRVSGRVLSVTWSADGNMLYSGS-----SDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-  198 (744)
Q Consensus       126 l~~h~~~V~~i~~s~dg~~l~t~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~-  198 (744)
                      ...+.+++.+++++|||+.++...     ..+.+.+||..+++.+..+..        +...  .+.|+||| +++++. 
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~--------~~~~--~~a~SpDG~~l~va~~   85 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--------GFLP--NPVAAHSGSEFALAST   85 (373)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEEC--------CCCC--CEEECCCCCEEEEEEE
T ss_conf             45678986563018999789997342257876599998999979999957--------9886--0798689998999960


Q ss_pred             ---------CCCCEEEEECCCCCEEEEEECCCCCE-------EEEEECCCCCEEEEEC--CCCEEEEEECCCCCCCCCCC
Q ss_conf             ---------99979997299862489862166532-------5999848999799543--79819999810476899988
Q 004581          199 ---------STGSVQFWDSRHGTLLQAHSFHKGDV-------NALAAAPSHNRVFSTG--SDGQVILYKASCESIGPNDG  260 (744)
Q Consensus       199 ---------~dg~i~iwd~~~~~~~~~~~~h~~~v-------~~l~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~  260 (744)
                               .++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+.....      
T Consensus        86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~------  159 (373)
T d2madh_          86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS------  159 (373)
T ss_pred             CCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCE------
T ss_conf             57753212453189999777893888972688513685168970899858993799998698746776236872------


Q ss_pred             CCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE
Q ss_conf             87643311189996323105861234430357789999833111247988775444332135897399986389809997
Q 004581          261 LSSSEVIKKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAY  340 (744)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~  340 (744)
                                     ...+.....++.++         ++++                       ..+++.+.|+.+.+|
T Consensus       160 ---------------~~~~~~~~~~~~~s---------~~g~-----------------------~~~v~~~~dg~~~~~  192 (373)
T d2madh_         160 ---------------DDQLLSSPTCYHIH---------PGAP-----------------------STFYLLCAQGGLAKT  192 (373)
T ss_pred             ---------------EEEEECCCEEEEEE---------CCCC-----------------------CEEEEECCCCEEEEE
T ss_conf             ---------------89982452069996---------2899-----------------------199999479939999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             46765777886557999888400012213317738999928947999710357745678998878751289998349977
Q 004581          341 CANEFTKFSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSKASRK  420 (744)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (744)
                      +............                                                         ..........
T Consensus       193 ~~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~  215 (373)
T d2madh_         193 DHAGGAAGAGLVG---------------------------------------------------------AMLTAAQNLL  215 (373)
T ss_pred             ECCCCEEEEEEEE---------------------------------------------------------ECCCCCCCCE
T ss_conf             7477426678863---------------------------------------------------------0036675304


Q ss_pred             EEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCC
Q ss_conf             49999707999999983981299996227889722786210588345652189991089989999179919999946971
Q 004581          421 IICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSE  500 (744)
Q Consensus       421 i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~  500 (744)
                      .....+++++.+++.+.++.+.+|+....  ....  ..  .............+.|.....+..+.++.          
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----------  279 (373)
T d2madh_         216 TQPAQANKSGRIVWPVYSGKILQADISAA--GATN--KA--PIDALSGGRKADTWRPGGWQQVAYLKSSD----------  279 (373)
T ss_pred             EEEEEECCCCEEEEECCCCEEEEEECCCC--EEEE--EE--EECCCCCCEEEEEECCCCCEEEEEECCCC----------
T ss_conf             34588789942999258965999976899--0789--77--63056475786641367413357714997----------


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCE--
Q ss_conf             122105686455666899999667999877998999994898299999888514789806789863698654999993--
Q 004581          501 LLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV--  578 (744)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~--  578 (744)
                                             ....+..++..++....++.+.+||..+++....+..  ...+..++|+| ||+.  
T Consensus       280 -----------------------~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~--~~~~~~~a~sp-DG~~~l  333 (373)
T d2madh_         280 -----------------------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQ-DGGPDL  333 (373)
T ss_pred             -----------------------EEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC--CCCEEEEEECC-CCCEEE
T ss_conf             -----------------------5999548882478625898699998999969898668--99825899998-999899


Q ss_pred             EEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             9999369839999968886561100145974610014988467999579
Q 004581          579 LIITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQEFPGEVIGLSFSP  627 (744)
Q Consensus       579 l~~~~~d~~i~iwd~~~~~~~~ws~~~~~~~~~~~~~~~~~v~~i~fsp  627 (744)
                      +++++.|+.|++||+.+++.           .+.+..+......|++.+
T Consensus       334 ~vt~~~d~~v~v~D~~tg~~-----------~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         334 YALSAGTEVLHIYDAGAGDQ-----------DQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             EEEECCCCEEEEEECCCCCE-----------EEEECCCCCCCCEEEEEC
T ss_conf             99967999299999999989-----------999888898981899846

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2e-21  Score=135.02  Aligned_cols=149  Identities=11%  Similarity=0.151  Sum_probs=82.2

Q ss_pred             EEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf             699874497199999507983268401367557489999716999899982-8990999986689359999814799888
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKLGYEIYRITVGLGGLGS  177 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (744)
                      .++++..|+.|++|++...+.+...+.+ .|.+.+.+++|+|||++|++++ .|+.|++|++.............     
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-----   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-----   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-----
T ss_pred             EEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEEC-----
T ss_conf             9998789993899998399976999997-5799886899958979999997789969999996898707985301-----


Q ss_pred             CCCEEEEEEEEECCC-EEEEEC-CCCCEEEEECCCCCEEE--EEECCCCCEEEEEECCCCCEEEEECC-CCEEEEEECCC
Q ss_conf             995259999990599-299983-99979997299862489--86216653259998489997995437-98199998104
Q 004581          178 GPELCIWSLLSLRCG-TLVSAD-STGSVQFWDSRHGTLLQ--AHSFHKGDVNALAAAPSHNRVFSTGS-DGQVILYKASC  252 (744)
Q Consensus       178 ~~~~~v~~i~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~~~~~-dg~i~iw~~~~  252 (744)
                      .....+..++|+||| ++++++ .++.+.+|+........  ....+...+.++.++|+++++++++. +..+.+|+...
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECC
T ss_conf             36998549999599988742056888302200111000000100377853149886301013102565542056897326


Q ss_pred             C
Q ss_conf             7
Q 004581          253 E  253 (744)
Q Consensus       253 ~  253 (744)
                      .
T Consensus       160 ~  160 (333)
T d1ri6a_         160 D  160 (333)
T ss_dssp             T
T ss_pred             C
T ss_conf             8

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.3e-22  Score=141.75  Aligned_cols=71  Identities=18%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             CEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEEECCCCCCEE
Q ss_conf             19999946971122105686455666899999667999877998--9999948982999998885147898067898636
Q 004581          490 RIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQ--WLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT  567 (744)
Q Consensus       490 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~--~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  567 (744)
                      .|.+||..+++.+.++..            ...+.+++|||||+  +++++..|+.|++||+++++....+.. ++..+.
T Consensus       281 ~v~v~d~~t~~~~~~~~~------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~-~G~~p~  347 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEM------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQ  347 (355)
T ss_dssp             EEEEEETTTCCEEEEEEE------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCC
T ss_pred             EEEEEECCCCCEEEEECC------------CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC-CCCCCC
T ss_conf             599986788849899668------------9987799992899969999978999899999999989999928-697965


Q ss_pred             EEEECC
Q ss_conf             986549
Q 004581          568 AAGFPP  573 (744)
Q Consensus       568 ~l~~sp  573 (744)
                      .+.+.+
T Consensus       348 ~i~~~d  353 (355)
T d2bbkh_         348 VITTAD  353 (355)
T ss_dssp             EEECCC
T ss_pred             EEEECC
T ss_conf             899699

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.5e-21  Score=135.64  Aligned_cols=71  Identities=7%  Similarity=0.050  Sum_probs=34.5

Q ss_pred             EEEECCCCCEEEEEECC----------CCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCE--EEEEECCCEEEEEE
Q ss_conf             99987799899999489----------8299999888514789806789863698654999993--99993698399999
Q 004581          525 KMFTSSDGQWLAAVNCF----------GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNV--LIITTSSNQVYVFD  592 (744)
Q Consensus       525 ~l~~s~dg~~las~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~--l~~~~~d~~i~iwd  592 (744)
                      .+++++++..++....+          ..|.+||..+++....+...  ..+.+++|+| |++.  ++++..|+.|++||
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~--~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQ-DEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECC-SSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCC--CCEEEEEECC-CCCEEEEEEECCCCEEEEEE
T ss_conf             99980799767887406871265179975999867888498996689--9877999928-99969999978999899999


Q ss_pred             CCCCCC
Q ss_conf             688865
Q 004581          593 VEAKQL  598 (744)
Q Consensus       593 ~~~~~~  598 (744)
                      ++++++
T Consensus       330 ~~tg~~  335 (355)
T d2bbkh_         330 AESGEE  335 (355)
T ss_dssp             TTTCCE
T ss_pred             CCCCCE
T ss_conf             999989

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.2e-20  Score=130.52  Aligned_cols=30  Identities=17%  Similarity=0.327  Sum_probs=11.7

Q ss_pred             EEEEEEECCCCEEEEEEC-CCEEEEEECCCC
Q ss_conf             899997169998999828-990999986689
Q 004581          133 VLSVTWSADGNMLYSGSS-DGYIRSWDAKLG  162 (744)
Q Consensus       133 V~~i~~s~dg~~l~t~~~-dg~i~iwd~~~~  162 (744)
                      +..++|+|||++|++++. ++.+.+|+....
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CEEEEECCCCCEEEECCCCCCCEEEECCCCC
T ss_conf             5499995999887420568883022001110

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.86  E-value=1.1e-18  Score=119.22  Aligned_cols=104  Identities=11%  Similarity=0.064  Sum_probs=45.7

Q ss_pred             EEEEEECCCCEEEE--ECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE-EEEECCC----C--EEEEECCC
Q ss_conf             89999179919999--94697112210568645566689999966799987799899-9994898----2--99999888
Q 004581          481 QLIIAGHDRRIYVV--DVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL-AAVNCFG----D--VYIFNLEI  551 (744)
Q Consensus       481 ~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-as~~~dg----~--i~iwd~~~  551 (744)
                      ++.....+|...+|  +.. +.....+..           +...|..+ ++++++.+ +++..++    .  |+-.++.+
T Consensus       334 ~~~~s~~dg~~~ly~~~~~-g~~~~~lt~-----------g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g  400 (470)
T d2bgra1         334 YKIISNEEGYRHICYFQID-KKDCTFITK-----------GTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSD  400 (470)
T ss_dssp             EEEEECTTSCEEEEEEETT-CSCCEESCC-----------SSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTC
T ss_pred             EEEEECCCCCCEEEEEECC-CCCEEEECC-----------CCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf             7987436757645999526-873045116-----------98048787-8977999999995689983517999998889


Q ss_pred             CCEEEEEE---CCCCCCEEEEEECCCCCCEEEEEEC---CCEEEEEECCCCCC
Q ss_conf             51478980---6789863698654999993999936---98399999688865
Q 004581          552 QRQHWFIS---RLEGASVTAAGFPPQNNNVLIITTS---SNQVYVFDVEAKQL  598 (744)
Q Consensus       552 ~~~~~~~~---~~~~~~v~~l~~sp~d~~~l~~~~~---d~~i~iwd~~~~~~  598 (744)
                      ......+.   ..|...+..++||| |+++++....   .-.+.+|+..+++.
T Consensus       401 ~~~~~~lt~~~~~~~~~~~s~~fSp-dgky~~~~~s~~~~P~~~l~~~~~g~~  452 (470)
T d2bgra1         401 YTKVTCLSCELNPERCQYYSVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDKG  452 (470)
T ss_dssp             TTCEEESSTTTSTTTBCBEEEEECT-TSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred             CCCEEEECCCCCCCCCCEEEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf             9860570354358889879999998-999999983289998199999899989

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.86  E-value=4.7e-18  Score=115.58  Aligned_cols=55  Identities=20%  Similarity=0.126  Sum_probs=26.6

Q ss_pred             CCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf             971999995079832684013675574899997169998999828990999986689359
Q 004581          106 DGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEI  165 (744)
Q Consensus       106 dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~  165 (744)
                      ++.+.+||+.+++ +   ..+..|...+..+.|||||+.+|... ++.+.+|+..++...
T Consensus        91 ~~~~~l~d~~~~~-~---~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~  145 (470)
T d2bgra1          91 TASYDIYDLNKRQ-L---ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY  145 (470)
T ss_dssp             EEEEEEEETTTTE-E---CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             CCEEEEEECCCCC-C---CCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEE
T ss_conf             7349999898885-1---31246874231010146764135751-464137988999465

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.5e-17  Score=112.62  Aligned_cols=89  Identities=8%  Similarity=0.026  Sum_probs=60.8

Q ss_pred             CEEEEEECCCEEEEEECC---------CCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCE--EEEEE
Q ss_conf             189991089989999179---------9199999469711221056864556668999996679998779989--99994
Q 004581          471 HSMIFSYDSSQLIIAGHD---------RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQW--LAAVN  539 (744)
Q Consensus       471 ~~i~~spd~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~--las~~  539 (744)
                      ..+++++++..++....+         ..|.+||..+++.+.++..            ...+..++|||||+.  +++..
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~------------~~~~~~~a~spDG~~~ly~s~~  334 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------------GHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------------EEEECEEEECCSSSCEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC------------CCCEEEEEECCCCCEEEEEEEC
T ss_conf             5688717998799983589733405886499998999948689558------------9965179999899989999948


Q ss_pred             CCCCEEEEECCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf             8982999998885147898067898636986549
Q 004581          540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      .++.|++||..+++....++..  ..++.|++-+
T Consensus       335 ~~~~v~v~D~~tgk~~~~i~~g--~~P~~l~~~~  366 (368)
T d1mdah_         335 GTEVLDIYDAASDQDQSSVELD--KGPESLSVQN  366 (368)
T ss_dssp             TTTEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred             CCCEEEEEECCCCCEEEEEECC--CCCCEEEEEC
T ss_conf             9996999989999799998799--9987899734

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.80  E-value=2.2e-20  Score=129.01  Aligned_cols=113  Identities=8%  Similarity=0.032  Sum_probs=68.3

Q ss_pred             EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             58733997089997657805389601483125996426998544311145545776336889999987676677999860
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQSIDFSIWQMAVAPSNSSLMHAVTNSDHIGNGYLNDKSNDSDDHETSESENDSDSD   87 (744)
Q Consensus         8 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~i~~i~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (744)
                      +++++.+|.|++|++.+++.+.++.         .|+|++...                                     
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~Ip---------Vfspd~~~g-------------------------------------   47 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIP---------VFNVDSATG-------------------------------------   47 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEEC---------SSSBCTTTC-------------------------------------
T ss_pred             EEECCCCCCEEEEECCCCCEEEEEE---------EECCCCCEE-------------------------------------
T ss_conf             9968877748999678980799997---------675789879-------------------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEE
Q ss_conf             00012324589699874497199999507983268401367557489999716999899982-89909999866893599
Q 004581           88 ELHEQSVVEDRRVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS-SDGYIRSWDAKLGYEIY  166 (744)
Q Consensus        88 ~~~~~~~~~~~~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~-~dg~i~iwd~~~~~~~~  166 (744)
                                    .|..+.+.+++..  ....   .....|.-......++|||++|+... .+.+|.++|+.+++...
T Consensus        48 --------------~g~~~es~~vl~~--~~~~---~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~  108 (441)
T d1qnia2          48 --------------WGITNESKEILGG--DQQY---LNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK  108 (441)
T ss_dssp             --------------TTTSHHHHHHHCS--SSCC---SCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             --------------EEECCCCCEEEEC--CCCC---CCCCCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEE
T ss_conf             --------------9988865047831--3322---56755677722103268888899973899979999887784755


Q ss_pred             EEEECCCCCCCCCCEEEEEEEEECCC
Q ss_conf             99814799888995259999990599
Q 004581          167 RITVGLGGLGSGPELCIWSLLSLRCG  192 (744)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~i~~~~~~  192 (744)
                      .+..       ........++|+|++
T Consensus       109 ii~i-------P~g~gphgi~~spdg  127 (441)
T d1qnia2         109 ITHI-------PNVQAIHGLRLQKVP  127 (441)
T ss_dssp             EEEC-------TTCCCEEEEEECCSS
T ss_pred             EEEC-------CCCCCCCCEEEECCC
T ss_conf             7956-------788786434870569

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=4.5e-16  Score=104.17  Aligned_cols=135  Identities=7%  Similarity=-0.147  Sum_probs=57.2

Q ss_pred             EEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEE----------CCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf             99999507983268401367557489999716999899982----------89909999866893599998147998889
Q 004581          109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGS----------SDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus       109 i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      |.+||..+++.+   ..+..+...  .++|+|||+.|++.+          .|+.|.+||..+++.+..+..+..... .
T Consensus        48 ~~~~d~~~~~~~---~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~-~  121 (368)
T d1mdah_          48 NWVSCAGCGVTL---GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-S  121 (368)
T ss_dssp             EEEEETTTTEEE---EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC-C
T ss_pred             EEEEECCCCCEE---EEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEE-C
T ss_conf             799708998377---888578777--5139899988999755676401035678699998999938306437854210-2


Q ss_pred             CCEEEEEEEEECCC-EEEEE-CCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
Q ss_conf             95259999990599-29998-3999799972998624898621665325999848999799543798199998104
Q 004581          179 PELCIWSLLSLRCG-TLVSA-DSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAAPSHNRVFSTGSDGQVILYKASC  252 (744)
Q Consensus       179 ~~~~v~~i~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~~  252 (744)
                      .......++|+||| +++.+ ..++.+.+||+.+++.+..+..+......   ......++..+.||.+..++...
T Consensus       122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~  194 (368)
T d1mdah_         122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCS
T ss_pred             CCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEC---CCCCCEEEEECCCCCEEEEEECC
T ss_conf             46886405887899899999689985999989989386786046752374---69982399994899889998268

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.73  E-value=3.1e-16  Score=105.15  Aligned_cols=116  Identities=12%  Similarity=0.048  Sum_probs=67.6

Q ss_pred             EEEEEECCCEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCC
Q ss_conf             69987449719999950798326840136755748999971699989998289909999866893599998147998889
Q 004581           99 RVALACDDGCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSG  178 (744)
Q Consensus        99 ~la~~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  178 (744)
                      .+++++.+|.|++|++.+.+.+   +++.         .|+|++... .+..+.+.+++.  ++.....        ...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l---~~Ip---------Vfspd~~~g-~g~~~es~~vl~--~~~~~~~--------gd~   69 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMREL---MRIP---------VFNVDSATG-WGITNESKEILG--GDQQYLN--------GDC   69 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEE---EEEC---------SSSBCTTTC-TTTSHHHHHHHC--SSSCCSC--------CCB
T ss_pred             EEEECCCCCCEEEEECCCCCEE---EEEE---------EECCCCCEE-EEECCCCCEEEE--CCCCCCC--------CCC
T ss_conf             9996887774899967898079---9997---------675789879-998886504783--1332256--------755


Q ss_pred             CCEEEEEEEEECCC-EE-EEECCCCCEEEEECCCCCEEEEEEC-CCCCEEEEEECCCCCEEE
Q ss_conf             95259999990599-29-9983999799972998624898621-665325999848999799
Q 004581          179 PELCIWSLLSLRCG-TL-VSADSTGSVQFWDSRHGTLLQAHSF-HKGDVNALAAAPSHNRVF  237 (744)
Q Consensus       179 ~~~~v~~i~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~  237 (744)
                      |........++||| ++ +....++.|.++|+++++..+.+.. +......++|+|++++++
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~Y  131 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNY  131 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCE
T ss_pred             CCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEE
T ss_conf             67772210326888889997389997999988778475579567887864348705699899

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.70  E-value=2.6e-13  Score=88.33  Aligned_cols=180  Identities=13%  Similarity=0.068  Sum_probs=109.7

Q ss_pred             CCCCCEEEEEECCCCCEEEEEC--CCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEC-CCCEE
Q ss_conf             4997749999707999999983--98129999622788972278621058834565218999108998999917-99199
Q 004581          416 KASRKIICSTISNSGMLFAYSD--HVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGH-DRRIY  492 (744)
Q Consensus       416 ~~~~~i~~~~~s~~g~~la~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~-dg~i~  492 (744)
                      .....+.+++|+|+|+++++..  .+.|.+|+...   ...+...............+.++|+||++++.+..+ ++.|.
T Consensus       142 q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~---~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~  218 (365)
T d1jofa_         142 QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC  218 (365)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCC---CCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEE
T ss_conf             88981159788899998998207998799997068---871665251111278874089998899866999515899899


Q ss_pred             EEECCCCCEEEEECCCC--------CCCCCCCCCCCCCEEEEEECCCCCEEEEEEC------CCCEEEEECCCCCEEE--
Q ss_conf             99946971122105686--------4556668999996679998779989999948------9829999988851478--
Q 004581          493 VVDVSSSELLHTFTPCR--------EEHDREIQPSEPPITKMFTSSDGQWLAAVNC------FGDVYIFNLEIQRQHW--  556 (744)
Q Consensus       493 i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~l~~s~dg~~las~~~------dg~i~iwd~~~~~~~~--  556 (744)
                      +|++...+.........        .........+......+.++|||++|+++..      .+.|..|++.......  
T Consensus       219 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~  298 (365)
T d1jofa_         219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ  298 (365)
T ss_dssp             EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred             EEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf             99955987537787312402455655666544443577631699899997899713578754227999985688714467


Q ss_pred             -EEE--CCCCCCEEEEEECCCCCCEEEEEE-CCCEEEEEECCCCCC
Q ss_conf             -980--678986369865499999399993-698399999688865
Q 004581          557 -FIS--RLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQL  598 (744)
Q Consensus       557 -~~~--~~~~~~v~~l~~sp~d~~~l~~~~-~d~~i~iwd~~~~~~  598 (744)
                       .+.  ...+..+.+++++|.+|++|+++. .++.|.+|+++...+
T Consensus       299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             EEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf             6766777679986478964899999999967999499999828867

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.67  E-value=1.2e-11  Score=78.72  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=15.1

Q ss_pred             CEEEEEECC-CCCEEEEEE-CCCCEEEEECCCC
Q ss_conf             667999877-998999994-8982999998885
Q 004581          522 PITKMFTSS-DGQWLAAVN-CFGDVYIFNLEIQ  552 (744)
Q Consensus       522 ~i~~l~~s~-dg~~las~~-~dg~i~iwd~~~~  552 (744)
                      ....++++| +|++|+++. .++.|.+|+++..
T Consensus       310 ~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEECCCCCCEEEEEECCCCEEEEEEEECC
T ss_conf             864789648999999999679994999998288

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-11  Score=78.51  Aligned_cols=16  Identities=19%  Similarity=0.048  Sum_probs=9.9

Q ss_pred             EEEEECCCCCEEEEEC
Q ss_conf             5999848999799543
Q 004581          225 NALAAAPSHNRVFSTG  240 (744)
Q Consensus       225 ~~l~~~~~~~~l~~~~  240 (744)
                      ..+-|+|||++|+...
T Consensus       176 ~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             CEEEECCCCCEEEEEE
T ss_conf             3489779898689999

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-09  Score=67.31  Aligned_cols=38  Identities=3%  Similarity=0.036  Sum_probs=19.1

Q ss_pred             CCCEEEEEECCCEEEEEEC-C---CCEEEEECCCCCEEEEEC
Q ss_conf             5218999108998999917-9---919999946971122105
Q 004581          469 FAHSMIFSYDSSQLIIAGH-D---RRIYVVDVSSSELLHTFT  506 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~  506 (744)
                      .+..+.|+++++.++.... +   ..+.++|..+++....+.
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEE
T ss_conf             045668757993899997410030137997079992787789

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.42  E-value=9.9e-10  Score=67.70  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=40.6

Q ss_pred             EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEECCCCCEEEEECCC-
Q ss_conf             899997169998999828990999986689359999814799888995259999990599-299983999799972998-
Q 004581          133 VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSADSTGSVQFWDSRH-  210 (744)
Q Consensus       133 V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~~dg~i~iwd~~~-  210 (744)
                      +..++++|||+++++...+++|..|+.. ++... +.        .....+.+++|.+++ .+++...++.+..++... 
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~-~~--------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPD-GNQQI-HA--------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EE--------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCCEEECCCCCEEEEECCCCEEEEEECC-CCEEE-EE--------CCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCC
T ss_conf             4787799998899996889989999089-98899-97--------17998536898677886998328953788871011


Q ss_pred             -CCEEEEEE-CCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
Q ss_conf             -62489862-166532599984899979954379819999810
Q 004581          211 -GTLLQAHS-FHKGDVNALAAAPSHNRVFSTGSDGQVILYKAS  251 (744)
Q Consensus       211 -~~~~~~~~-~h~~~v~~l~~~~~~~~l~~~~~dg~i~iw~~~  251 (744)
                       +....... ........+++.++++.+++...++.+..++..
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             CCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf             1101210235786322166771579787503565541024216

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.4e-09  Score=65.48  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=28.1

Q ss_pred             CCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECC---CEEEEEEC
Q ss_conf             99667999877998999994898---2999998885147898067898636986549999939999369---83999996
Q 004581          520 EPPITKMFTSSDGQWLAAVNCFG---DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS---NQVYVFDV  593 (744)
Q Consensus       520 ~~~i~~l~~s~dg~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d---~~i~iwd~  593 (744)
                      ........|+|+++.++..+.++   .+.+.+......  .+.. .........|+| ||+.|+..+..   ..++++++
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLS-STFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECC-CSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEET
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC--EEEE-CCCCCCCEEECC-CCCEEEEEECCCCCCEEEEEEC
T ss_conf             22223432234543057786058801256760356440--5850-686544558989-9999999981799847999999


Q ss_pred             CCCC
Q ss_conf             8886
Q 004581          594 EAKQ  597 (744)
Q Consensus       594 ~~~~  597 (744)
                      +++.
T Consensus       246 dg~~  249 (269)
T d2hqsa1         246 DGRF  249 (269)
T ss_dssp             TSCC
T ss_pred             CCCC
T ss_conf             9997

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.38  E-value=1.5e-09  Score=66.72  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=8.9

Q ss_pred             CEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf             18999108998999917991999994
Q 004581          471 HSMIFSYDSSQLIIAGHDRRIYVVDV  496 (744)
Q Consensus       471 ~~i~~spd~~~l~~~~~dg~i~i~d~  496 (744)
                      ..+++.++++++++...++.+..++.
T Consensus       116 n~i~~~~~g~~~v~~~~~~~i~~~~~  141 (302)
T d2p4oa1         116 NGITPLSDTQYLTADSYRGAIWLIDV  141 (302)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             CEEEECCCCCEEEECCCCCCCEEEEC
T ss_conf             16677157978750356554102421

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=6e-09  Score=63.19  Aligned_cols=52  Identities=6%  Similarity=-0.002  Sum_probs=24.1

Q ss_pred             CCCEEEEEECCCCCEEEEEEC---CCCEEEEECCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf             996679998779989999948---982999998885147898067898636986549
Q 004581          520 EPPITKMFTSSDGQWLAAVNC---FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPP  573 (744)
Q Consensus       520 ~~~i~~l~~s~dg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp  573 (744)
                      ........|||||++||..+.   ...|+++++++..... +.. ....+...+|+|
T Consensus       213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~-~~g~~~~p~WSP  267 (269)
T d2hqsa1         213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPA-TDGQVKFPAWSP  267 (269)
T ss_dssp             SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCC-SSSEEEEEEECC
T ss_pred             CCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEC-CCCCEEEEEECC
T ss_conf             8654455898999999999817998479999999997799-857-998588378289

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=1e-08  Score=61.88  Aligned_cols=110  Identities=6%  Similarity=0.016  Sum_probs=44.6

Q ss_pred             CCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             52189991089989999179919999946971122105686455666899999667999877998999994898299999
Q 004581          469 FAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFN  548 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd  548 (744)
                      ....++++++++.+++...++.|..++............           .......+++.++|+++++....+.|..++
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-----------DITAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-----------SCCSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             CCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECC-----------CCCCCCCCEEEEEEEEEEEECCCCEEEEEE
T ss_conf             752054548998864102564332223431001222101-----------147876312310001343214899899996


Q ss_pred             CCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEE
Q ss_conf             8885147898067898636986549999939999369839999
Q 004581          549 LEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       549 ~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iw  591 (744)
                      ....... .+....-..+..|++++ +++++++-..+++|+.+
T Consensus       210 ~~~~~~~-~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         210 AGSTTST-VLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             TTCSCCE-ECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEE
T ss_pred             CCCCEEE-EECCCCCCCEEEEEEEC-CCCEEEEECCCCEEEEE
T ss_conf             9997699-97069989817999908-99999997999989999

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=1.9e-08  Score=60.25  Aligned_cols=191  Identities=7%  Similarity=0.019  Sum_probs=96.3

Q ss_pred             CEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCC
Q ss_conf             74999970799999998398129999622788972278621058834565218999108998999917991999994697
Q 004581          420 KIICSTISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSS  499 (744)
Q Consensus       420 ~i~~~~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~  499 (744)
                      ....+++++++.++++...+.+..+.. . .....+      ........+..+++.++++++++-..+..+..++....
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~-~-~~~~~~------~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~  129 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAA-G-SNNQTV------LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK  129 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECT-T-CSCCEE------CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCS
T ss_pred             CCEEEEECCCCCEEEEEEEECEEEEEE-E-CCCEEE------EEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             840899938998898631000035542-1-120000------00100000000024553205750335553211232222


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEE
Q ss_conf             11221056864556668999996679998779989999948982999998885147898067898636986549999939
Q 004581          500 ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVL  579 (744)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l  579 (744)
                      .. ..+...          .......++++++++.+++...++.|..++.+..... .+.......+..+++.+ +++++
T Consensus       130 ~~-~~~~~~----------~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~-~g~l~  196 (260)
T d1rwia_         130 TQ-TVLPFT----------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDE-AGTVY  196 (260)
T ss_dssp             SC-EECCCC----------SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECT-TCCEE
T ss_pred             EE-EEEEEC----------CCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEE-EEECCCCCCCCCCEEEE-EEEEE
T ss_conf             01-223203----------6677520545489988641025643322234310012-22101147876312310-00134


Q ss_pred             EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEECCCCCCCEEEEECC--CEEEEEE
Q ss_conf             999369839999968886561100145974610014-988467999579999857999858--4499994
Q 004581          580 IITTSSNQVYVFDVEAKQLGEWSMQHTFVLPRRYQE-FPGEVIGLSFSPSPSSSSVIIYSA--RAMCVID  646 (744)
Q Consensus       580 ~~~~~d~~i~iwd~~~~~~~~ws~~~~~~~~~~~~~-~~~~v~~i~fspdg~~~~~~~~~~--~~~~~~d  646 (744)
                      ++....+.|..++..+...+.            +.. .-....+|+++++|+   +|+.+.  ..+.+|+
T Consensus       197 vsd~~~~~i~~~~~~~~~~~~------------~~~~~~~~P~~i~~d~~g~---l~vad~~~~rI~~i~  251 (260)
T d1rwia_         197 VTEHNTNQVVKLLAGSTTSTV------------LPFTGLNTPLAVAVDSDRT---VYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEETTTTEEEEECTTCSCCEE------------CCCCSCCCEEEEEECTTCC---EEEEEGGGTEEEEEC
T ss_pred             EEECCCCEEEEEECCCCEEEE------------ECCCCCCCEEEEEEECCCC---EEEEECCCCEEEEEE
T ss_conf             321489989999699976999------------7069989817999908999---999979999899995

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=3.3e-08  Score=58.93  Aligned_cols=159  Identities=13%  Similarity=0.170  Sum_probs=89.8

Q ss_pred             CCEEEEEECCCCCEEEEE-CCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf             774999970799999998-3981299996227889722786210588345652189991089989999179919999946
Q 004581          419 RKIICSTISNSGMLFAYS-DHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVS  497 (744)
Q Consensus       419 ~~i~~~~~s~~g~~la~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~  497 (744)
                      .....+++.++|.++++. ....+.+++..    +..+.   ......+......+++.++++.+++....+.|++|+. 
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~----g~~~~---~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-  185 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN----GNVLH---KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-  185 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEE---EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-
T ss_pred             CCCCEECCCCCCCEEEEEECCCEEEEECCC----CCEEE---CCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEC-
T ss_conf             254200001478479996326325676268----75010---0220010256624320120017862013551002304-


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEEEEEC-CCCCCEEEEEECCCC
Q ss_conf             9711221056864556668999996679998779989999948-98299999888514789806-789863698654999
Q 004581          498 SSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC-FGDVYIFNLEIQRQHWFISR-LEGASVTAAGFPPQN  575 (744)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~-dg~i~iwd~~~~~~~~~~~~-~~~~~v~~l~~sp~d  575 (744)
                      +++.+.++...         ........+++.++|+.+++-.. ++.|.+|+.+ ++....+.. .....+..+++.| |
T Consensus       186 ~G~~~~~~g~~---------g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~-d  254 (279)
T d1q7fa_         186 EGQYLRQIGGE---------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMD-D  254 (279)
T ss_dssp             TCCEEEEESCT---------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEET-T
T ss_pred             CCCEEEEECCC---------CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCCCEEEEEEEC-C
T ss_conf             79444530113---------2114876232314786999978998089999999-99999996888889883799908-9


Q ss_pred             CCEEEEEECCCEEEEEECCCCC
Q ss_conf             9939999369839999968886
Q 004581          576 NNVLIITTSSNQVYVFDVEAKQ  597 (744)
Q Consensus       576 ~~~l~~~~~d~~i~iwd~~~~~  597 (744)
                      +. |++++.++.|++|......
T Consensus       255 G~-l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         255 GS-VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             TE-EEEEETTTEEEEEECSCCC
T ss_pred             CC-EEEEECCCEEEEEEEEEEC
T ss_conf             91-9999189969998722035

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.20  E-value=3.9e-08  Score=58.51  Aligned_cols=114  Identities=16%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             CCCEEEEEECCC----EEEE-EECCCCEEEEECCC-CCEE-----EEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf             521899910899----8999-91799199999469-7112-----21056864556668999996679998779989999
Q 004581          469 FAHSMIFSYDSS----QLII-AGHDRRIYVVDVSS-SELL-----HTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA  537 (744)
Q Consensus       469 ~v~~i~~spd~~----~l~~-~~~dg~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las  537 (744)
                      ..+.++|+|++.    +|.+ -+..+.|..|++.. +.+.     ..+...          .....-.+++..+|++.++
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~----------~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT----------HEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC----------SSCEEEEEEEBTTCCEEEE
T ss_pred             EEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCC----------CCCCCEEEEEECCCCEEEE
T ss_conf             221369978877630379998602431177611676543015689971335----------6664102578347857999


Q ss_pred             EECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEE-ECCCEEEEEECC
Q ss_conf             948982999998885147898067898636986549999939999-369839999968
Q 004581          538 VNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSNQVYVFDVE  594 (744)
Q Consensus       538 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~-~~d~~i~iwd~~  594 (744)
                      ....+.|.+|+.+++.....+.. +...+++++|.| |++.|+++ ..++.|..+++.
T Consensus       243 ~~~~g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred             ECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEEEC-CCCEEEEEECCCCCEEEEECC
T ss_conf             82799999996999979999979-999878999928-989999998789919999789

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.10  E-value=1.2e-07  Score=55.74  Aligned_cols=119  Identities=10%  Similarity=0.016  Sum_probs=65.3

Q ss_pred             EEEEEECCCCC----EEEE--ECCCCEEEEEEECCCCCCCEEEEEECCCCC-CCCCCCEEEEEECCCEEEEEECCCCEEE
Q ss_conf             49999707999----9999--839812999962278897227862105883-4565218999108998999917991999
Q 004581          421 IICSTISNSGM----LFAY--SDHVKPSLFELKKGKVGQGEWIINKRQLPR-KLQFAHSMIFSYDSSQLIIAGHDRRIYV  493 (744)
Q Consensus       421 i~~~~~s~~g~----~la~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~spd~~~l~~~~~dg~i~i  493 (744)
                      ...++|++++.    .|.+  ...+.|..|++.. ++....... -..+.. .......+++..+|+..++....+.|.+
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~-~g~~~~~~~-~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKV-WGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEE-EEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             EEEEEECCCCCCCEEEEEEEEECCCCEEEEECCC-CCCCCEEEE-EEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEE
T ss_conf             2136997887763037999860243117761167-654301568-99713356664102578347857999827999999


Q ss_pred             EECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCC
Q ss_conf             994697112210568645566689999966799987799899-99948982999998885
Q 004581          494 VDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWL-AAVNCFGDVYIFNLEIQ  552 (744)
Q Consensus       494 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-as~~~dg~i~iwd~~~~  552 (744)
                      |+.+.++.+..+..           .....++++|.||++.| ++.+.+|.|..+++...
T Consensus       252 ~dp~~g~~~~~i~~-----------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         252 FGPDGGQPKMRIRC-----------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             ECTTCBSCSEEEEC-----------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EECCCCEEEEEEEC-----------CCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf             96999979999979-----------99987899992898999999878991999978999

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.06  E-value=1.8e-07  Score=54.70  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=8.8

Q ss_pred             EEEEEECCCEEEEEECCCCEEEEE
Q ss_conf             899910899899991799199999
Q 004581          472 SMIFSYDSSQLIIAGHDRRIYVVD  495 (744)
Q Consensus       472 ~i~~spd~~~l~~~~~dg~i~i~d  495 (744)
                      .+++.++|++.++....+.|.+++
T Consensus       232 Gl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         232 SCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             EEEECCCCCEEEEECCCCEEEEEC
T ss_conf             641738999999984899899997

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.97  E-value=4e-07  Score=52.66  Aligned_cols=56  Identities=11%  Similarity=0.148  Sum_probs=37.6

Q ss_pred             CCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             89829999988851478980678986369865499999399993698399999688865
Q 004581          540 CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       540 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~  598 (744)
                      ..|.|.-+|+.+++..+..+...  +..+-..+. .+.++++++.|+.++.+|.++|+.
T Consensus       442 ~~G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         442 EMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCCEEEECCCCCCEEEECCCCC--CCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCE
T ss_conf             75617885367784642767899--987560596-699799977899699999999868

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=4.7e-07  Score=52.31  Aligned_cols=73  Identities=11%  Similarity=0.154  Sum_probs=36.2

Q ss_pred             CCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             5218999108998999917-991999994697112210568645566689999966799987799899999489829999
Q 004581          469 FAHSMIFSYDSSQLIIAGH-DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIF  547 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iw  547 (744)
                      ....+++.++|+.+++-.. ++.|.+|+ .+|+.+.++....         .......+++.+||+++ +++.+..|++|
T Consensus       201 ~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~---------~~~~p~~vav~~dG~l~-V~~~n~~v~~f  269 (279)
T d1q7fa_         201 YPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV---------KHAQCFDVALMDDGSVV-LASKDYRLYIY  269 (279)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS---------CCSCEEEEEEETTTEEE-EEETTTEEEEE
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCC---------CCCCEEEEEEECCCCEE-EEECCCEEEEE
T ss_conf             8762323147869999789980899999-9999999996888---------88988379990899199-99189969998


Q ss_pred             ECCCC
Q ss_conf             98885
Q 004581          548 NLEIQ  552 (744)
Q Consensus       548 d~~~~  552 (744)
                      .....
T Consensus       270 r~~~~  274 (279)
T d1q7fa_         270 RYVQL  274 (279)
T ss_dssp             ECSCC
T ss_pred             EEEEE
T ss_conf             72203

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=1e-06  Score=50.36  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=12.3

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             679998779989999948982999998
Q 004581          523 ITKMFTSSDGQWLAAVNCFGDVYIFNL  549 (744)
Q Consensus       523 i~~l~~s~dg~~las~~~dg~i~iwd~  549 (744)
                      .-.+++..+|++.++....+.|.+|+-
T Consensus       230 PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEEEEECCCCCEEEEECCCCEEEEECC
T ss_conf             036417389999999848998999979

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.75  E-value=2.4e-06  Score=48.22  Aligned_cols=72  Identities=11%  Similarity=0.142  Sum_probs=37.1

Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECC------CCCEEEEECCCCCEEEE
Q ss_conf             989998289909999866893599998147998889952599999905992999839------99799972998624898
Q 004581          143 NMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQA  216 (744)
Q Consensus       143 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~  216 (744)
                      .+++.++.|+.|.-.|.++|+....+......    ....+++--..-++.++.+..      .|.|+-+|..+|+++.+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~----~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIK----VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGG----GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEEEEECCCCEEEECCCCCCEECCCCCCCCC----CCCCCCCCCCEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEE
T ss_conf             29999807987685436568410231014655----56422458817777589930234443357328988788857788


Q ss_pred             EE
Q ss_conf             62
Q 004581          217 HS  218 (744)
Q Consensus       217 ~~  218 (744)
                      +.
T Consensus       198 ~~  199 (596)
T d1w6sa_         198 AY  199 (596)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             65

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.66  E-value=4.7e-06  Score=46.54  Aligned_cols=38  Identities=11%  Similarity=0.107  Sum_probs=16.4

Q ss_pred             CEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf             719999950798326840136755748999971699989998
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSG  148 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~  148 (744)
                      +.|.+.++.+++.    +.|..+.+.+...+|||||+.||..
T Consensus        21 ~dl~~~d~~~g~~----~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          21 DDLWEHDLKSGST----RKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             TEEEEEETTTCCE----EEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             CCEEEEECCCCCE----EEEECCCCCCCCEEECCCCCEEEEE
T ss_conf             9689998999987----9976699852677987899989999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.63  E-value=5.7e-06  Score=46.04  Aligned_cols=59  Identities=15%  Similarity=0.148  Sum_probs=22.5

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEE
Q ss_conf             6679998779989999948982999998885147898067898636986549999939999
Q 004581          522 PITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT  582 (744)
Q Consensus       522 ~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~  582 (744)
                      ..-.+++..+|++.++.-..+.|..|+-+ ++....+.. ....+++++|-..|.+.|++.
T Consensus       200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~l-P~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEV-PGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEEC-SCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCCEEECCCCCEEEEEECCCCEEEECCC-CCEEEEECC-CCCCEEEEEEECCCCCEEEEE
T ss_conf             66326786999989532078846885699-928668638-998527989828999999999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.56  E-value=8.9e-06  Score=44.94  Aligned_cols=37  Identities=3%  Similarity=-0.016  Sum_probs=16.0

Q ss_pred             CCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             21899910899899991799199999469711221056
Q 004581          470 AHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTP  507 (744)
Q Consensus       470 v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  507 (744)
                      ...+++..+|++.++.-..+.|..|+. +++.+..+..
T Consensus       201 pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         201 MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             CCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECC
T ss_conf             632678699998953207884688569-9928668638

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.54  E-value=1e-05  Score=44.58  Aligned_cols=54  Identities=11%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             CCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             829999988851478980678986369865499999399993698399999688865
Q 004581          542 GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       542 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~  598 (744)
                      |.+.-||+.+++..+..+...  +...-..+. .+.++++++.|+.++.||.++|+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~--p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS--PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS--SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEECCCCCCEEEEECCCC--CCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCE
T ss_conf             617875787786670516889--887760798-699899977999199999998868

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.53  E-value=1.1e-05  Score=44.39  Aligned_cols=54  Identities=11%  Similarity=0.259  Sum_probs=24.7

Q ss_pred             CCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             829999988851478980678986369865499999399993698399999688865
Q 004581          542 GDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       542 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~  598 (744)
                      |.|.-+|+.+++..+..+...  +...-..+- .+.+++.++.|+.++.||.++|+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~--~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT--HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS--SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCEEEEECCCCC--CCCCCEEEE-CCCEEEEECCCCCEEEEECCCCCE
T ss_conf             646887077883731025788--887740598-799899977898199999999858

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.46  E-value=1.6e-05  Score=43.40  Aligned_cols=390  Identities=8%  Similarity=-0.019  Sum_probs=169.3

Q ss_pred             CEEEEEE-CCCEEEEEEEC-CCCCEEEEECCCCC--------CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf             9699874-49719999950-79832684013675--------57489999716999899982899099998668935999
Q 004581           98 RRVALAC-DDGCVRIYRIT-DSDELIYHRSLPRV--------SGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYR  167 (744)
Q Consensus        98 ~~la~~~-~dg~i~iwd~~-~~~~~~~~~~l~~h--------~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~  167 (744)
                      ..+.+++ .++.|.-.|.. +++.+-....-...        ...-..+++.  +..++.++.|+.+...|.++|+....
T Consensus        63 g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~  140 (571)
T d2ad6a1          63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHCC
T ss_conf             9999942879959999489998668883588886544200247688862650--88699991797578210021122023


Q ss_pred             EEECCCCCCCCCCEEEEEEEEECCCEEEEEC------CCCCEEEEECCCCCEEEEEECCC--------------------
Q ss_conf             9814799888995259999990599299983------99979997299862489862166--------------------
Q 004581          168 ITVGLGGLGSGPELCIWSLLSLRCGTLVSAD------STGSVQFWDSRHGTLLQAHSFHK--------------------  221 (744)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~h~--------------------  221 (744)
                      .......    ....+.+.-..-++.++.+.      ..|.|.-+|+.+|+.+..+....                    
T Consensus       141 ~~~~~~~----~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~  216 (571)
T d2ad6a1         141 VEVCDPK----VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ  216 (571)
T ss_dssp             EECCCGG----GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             CCCCCCC----CCCCEEECCEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             4445544----324145367575885888502344234674799988898588997046886444555544544334675


Q ss_pred             -----------------CCE-EEEEECCCCCEEEEECCC----------------CEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             -----------------532-599984899979954379----------------8199998104768999888764331
Q 004581          222 -----------------GDV-NALAAAPSHNRVFSTGSD----------------GQVILYKASCESIGPNDGLSSSEVI  267 (744)
Q Consensus       222 -----------------~~v-~~l~~~~~~~~l~~~~~d----------------g~i~iw~~~~~~~~~~~~~~~~~~~  267 (744)
                                       +.+ ...++.++...++.+..+                ..+...|..+++             
T Consensus       217 ~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~-------------  283 (571)
T d2ad6a1         217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM-------------  283 (571)
T ss_dssp             SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC-------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHH-------------
T ss_conf             5556645677631437975204633052008345640345675223456633556532544125501-------------


Q ss_pred             CEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCC
Q ss_conf             11899963231058612344303577899998331112479887754443321358973999863898099974676577
Q 004581          268 KKWIYVGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTK  347 (744)
Q Consensus       268 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~  347 (744)
                      .    ...++...+++.......          ..          ..+.. .........++..+.+|.++++|..+.+.
T Consensus       284 ~----~W~~q~~~~D~Wd~D~~~----------~~----------~l~~~-~~~g~~~~~v~~~~k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         284 A----KWGYQKTPHDEWDFAGVN----------QM----------VLTDQ-PVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             E----EEEEESSTTCSSCCCCCC----------CC----------EEEEE-EETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             H----EECCCCCCCCCCCCCCCC----------CC----------CEEEE-ECCCCCCCCEEECCCCCEEEEEECCCCCE
T ss_conf             1----001245676331465655----------64----------11455-11576654046326564499985689837


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEC---CCCCEEEE
Q ss_conf             788655799988840001221331773899992894799971035774567899887875128999834---99774999
Q 004581          348 FSPHEICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVKSK---ASRKIICS  424 (744)
Q Consensus       348 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~  424 (744)
                      +......+...     ......  .        .....+..-.....            .........+   ....-...
T Consensus       339 i~~~~~~~~~~-----~~~~~~--~--------~~~~~i~~~~~~~~------------~~~~g~~~~p~~~Gg~~w~~~  391 (571)
T d2ad6a1         339 IVAEKVDPAVN-----VFKKVD--L--------KTGTPVRDPEFATR------------MDHKGTNICPSAMGFHNQGVD  391 (571)
T ss_dssp             EEEEESSTTCC-----SEEEEC--T--------TTCSEEECGGGCCC------------TTCCEEEESSCTTCSSCSCBC
T ss_pred             EEEECCCCCCC-----CCCCCC--C--------CCCCCCCCCCCCCC------------CCCCCEEEEECCCCCCCCCCC
T ss_conf             65554677532-----234556--4--------44632237643334------------566725777402224346652


Q ss_pred             EECCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCC-CCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf             9707999999983981299996227889722786210588-345652189991089989999179919999946971122
Q 004581          425 TISNSGMLFAYSDHVKPSLFELKKGKVGQGEWIINKRQLP-RKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLH  503 (744)
Q Consensus       425 ~~s~~g~~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~  503 (744)
                      +++|+..++.+........+....            .... ............+.... ......|.+.-+|+.+++.+.
T Consensus       392 a~dP~~~~~yv~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~l~AiD~~TG~~~W  458 (571)
T d2ad6a1         392 SYDPESRTLYAGLNHICMDWEPFM------------LPYRAGQFFVGATLAMYPGPNG-PTKKEMGQIRAFDLTTGKAKW  458 (571)
T ss_dssp             EEETTTTEEEEEEECEEEEEEECC------------CCCCTTSCCCCEEEEEEECTTS-TTSCCCEEEEEECTTTCCEEE
T ss_pred             EECCCCCEEEEECCCCCCCCCCCC------------CCCCCCCCCCCCCEEECCCCCC-CCCCCCCCEEEECCCCCCEEE
T ss_conf             077888628976553443343002------------4566775321563033146677-666775617885367784642


Q ss_pred             EECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCC-EEEEE
Q ss_conf             10568645566689999966799987799899999489829999988851478980678986369865499999-39999
Q 004581          504 TFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN-VLIIT  582 (744)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~-~l~~~  582 (744)
                      +......       ...+.+     +-.+.++++++.||.++-+|.++++.++.+.......-.-+.|.. ||+ |+++.
T Consensus       459 ~~~~~~~-------~~~g~l-----~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~-dGkqYi~v~  525 (571)
T d2ad6a1         459 TKWEKFA-------AWGGTL-----YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF-KGKQYIGSM  525 (571)
T ss_dssp             EEEESSC-------CCSBCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEEEEE
T ss_pred             ECCCCCC-------CCCCEE-----EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEE-CCEEEEEEE
T ss_conf             7678999-------875605-----966997999778996999999998687899899996515648988-999999999


Q ss_pred             EC
Q ss_conf             36
Q 004581          583 TS  584 (744)
Q Consensus       583 ~~  584 (744)
                      ..
T Consensus       526 ~g  527 (571)
T d2ad6a1         526 YG  527 (571)
T ss_dssp             EC
T ss_pred             EC
T ss_conf             06

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.24  E-value=5.5e-05  Score=40.36  Aligned_cols=93  Identities=16%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             EEECC--CCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCC-EEEEEC-CCC-----CEEEEE
Q ss_conf             97169--998999828990999986689359999814799888995259999990599-299983-999-----799972
Q 004581          137 TWSAD--GNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCG-TLVSAD-STG-----SVQFWD  207 (744)
Q Consensus       137 ~~s~d--g~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~l~s~~-~dg-----~i~iwd  207 (744)
                      ..+||  |+.++..+ ++.|.+.|+.+++.. .+.        .+...+....|+||| .|+... .++     .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt--------~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIV--------SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEE--------CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred             CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEE--------CCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEE
T ss_conf             258887999999990-996899989999879-976--------6998526779878999899998628987722899998


Q ss_pred             CCCCCEEEEEEC------CCCCEEEEEECCCCCEEEEE
Q ss_conf             998624898621------66532599984899979954
Q 004581          208 SRHGTLLQAHSF------HKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       208 ~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~~~  239 (744)
                      ...++..+....      .........|+|+++.++..
T Consensus        75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             25995288641688754764443431027988779999

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.19  E-value=7.4e-05  Score=39.63  Aligned_cols=82  Identities=9%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             CCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEE
Q ss_conf             91999994697112210568645566689999966799987799899999489829999988851478980678986369
Q 004581          489 RRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTA  568 (744)
Q Consensus       489 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  568 (744)
                      |.+.-||+.+++.+.+....            .+...=..+-.+.++++++.||.++.+|.++++.++.+.......-.-
T Consensus       457 G~l~AiD~~tGk~~W~~~~~------------~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P  524 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP  524 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             CCEEEECCCCCCEEEEECCC------------CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf             61787578778667051688------------988776079869989997799919999999886857998989945167


Q ss_pred             EEECCCCCC-EEEEEE
Q ss_conf             865499999-399993
Q 004581          569 AGFPPQNNN-VLIITT  583 (744)
Q Consensus       569 l~~sp~d~~-~l~~~~  583 (744)
                      +.|.. +|+ |+++..
T Consensus       525 ~ty~~-~GkQYv~v~~  539 (573)
T d1kb0a2         525 STYMV-DGRQYVSVAV  539 (573)
T ss_dssp             EEEEE-TTEEEEEEEE
T ss_pred             EEEEE-CCEEEEEEEE
T ss_conf             79998-9999999993

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.10  E-value=0.00011  Score=38.56  Aligned_cols=391  Identities=12%  Similarity=0.103  Sum_probs=168.5

Q ss_pred             CCEEEEEECCCEEEEEEECCCCCEEEEE-C---CCCC---CCC-EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf             8969987449719999950798326840-1---3675---574-899997169998999828990999986689359999
Q 004581           97 DRRVALACDDGCVRIYRITDSDELIYHR-S---LPRV---SGR-VLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRI  168 (744)
Q Consensus        97 ~~~la~~~~dg~i~iwd~~~~~~~~~~~-~---l~~h---~~~-V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~  168 (744)
                      +..+.+++.++.|.-.|..+++.+-... .   ....   ... -..++.  .+..++.+..++.+...|..+|+.+...
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE--ECCEEEEEECCCEEEEEECCCCCEEECC
T ss_conf             99999978999599996899987988779877644544322465357504--6884999738987999977789577305


Q ss_pred             EECCCCCCCCCCEEEEEEEEECCCEEEEECC------CCCEEEEECCCCCEEEEEECCC---------------------
Q ss_conf             8147998889952599999905992999839------9979997299862489862166---------------------
Q 004581          169 TVGLGGLGSGPELCIWSLLSLRCGTLVSADS------TGSVQFWDSRHGTLLQAHSFHK---------------------  221 (744)
Q Consensus       169 ~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~---------------------  221 (744)
                      ......    ....+...-..-++.++.+..      .|.|.-+|.++|+.+..+..-.                     
T Consensus       144 ~~~~~~----~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  219 (560)
T d1kv9a2         144 QTTDPA----KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (560)
T ss_dssp             ECSCTT----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             CCCCCC----CCEEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             766755----4045432004506851036531100135538999778862776641003455677643112234566666


Q ss_pred             ---------CCE-EEEEECCCCCEEEEECCC-------------------CEEEEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             ---------532-599984899979954379-------------------819999810476899988876433111899
Q 004581          222 ---------GDV-NALAAAPSHNRVFSTGSD-------------------GQVILYKASCESIGPNDGLSSSEVIKKWIY  272 (744)
Q Consensus       222 ---------~~v-~~l~~~~~~~~l~~~~~d-------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  272 (744)
                               ..+ ..+++.+...+++.+..+                   ..|...|..+++             ..|  
T Consensus       220 ~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~-------------~~W--  284 (560)
T d1kv9a2         220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK-------------LAW--  284 (560)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-------------EEE--
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-------------EEE--
T ss_conf             53100267887556552143468036447887435556424667765453036873377642-------------158--


Q ss_pred             EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf             96323105861234430357789999833111247988775444332135897399986389809997467657778865
Q 004581          273 VGSVRAHTHDVRALTVAVPISREDPLPEDKVKRSRGREKPIDFSYHKWAHLGVPMLISAGDDTKLFAYCANEFTKFSPHE  352 (744)
Q Consensus       273 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  352 (744)
                        .++...+++......          ...          ..+... -.......++.+..+|.++++|..+.+.+....
T Consensus       285 --~~Q~~~~D~wd~d~~----------~~~----------~l~~~~-~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         285 --HYQVTPGDSWDFTAT----------QQI----------TLAELN-IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (560)
T ss_dssp             --EEESSTTCCSCCCCC----------SCE----------EEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             --EEECCCCCCCCCCCC----------CEE----------EEEEEE-CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf             --871036533234565----------124----------420031-179602566625765369998468882435344


Q ss_pred             CCCCCCCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEECCCCC
Q ss_conf             57999888400012213317738999928947999710357745678998878751289998-34997749999707999
Q 004581          353 ICPAPQRVPIHLVHNTIFSHTSLLLVQYSCRLDILSVRLENNVESRSSSGGHASTSLLVQVK-SKASRKIICSTISNSGM  431 (744)
Q Consensus       353 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~  431 (744)
                      .....      ....+....          ...+.......            ..+...... ......-...+++|+..
T Consensus       342 ~~~~~------~~~~~d~~~----------~~~~~~~~~~~------------~~~~~~~~p~~~Gg~~w~~~a~dp~~~  393 (560)
T d1kv9a2         342 FGKVT------WAEKVDLAT----------GRPVEAPGVRY------------EKEPIVMWPSPFGAHNWHSMSFNPGTG  393 (560)
T ss_dssp             SSCCC------SEEEECTTT----------CCEEECTTTTC------------SSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             CCCCC------CCCCCCHHH----------CCCCCCCCCCC------------CCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             46544------334557221----------32100012322------------335505653566654565631668887


Q ss_pred             EEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCC
Q ss_conf             99998398129999622788972278621058834565218999108998999917991999994697112210568645
Q 004581          432 LFAYSDHVKPSLFELKKGKVGQGEWIINKRQLPRKLQFAHSMIFSYDSSQLIIAGHDRRIYVVDVSSSELLHTFTPCREE  511 (744)
Q Consensus       432 ~la~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~spd~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  511 (744)
                      ++.+.....-.++.....+...      ........      .+.+ ....-.+...|.+.-+|+.+++.+.++..    
T Consensus       394 ~~yvp~~~~~~~~~~~~~~~~~------~~~~~~~~------~~~~-~~~~p~~~~~G~l~A~D~~tGk~~W~~~~----  456 (560)
T d1kv9a2         394 LVYIPYQEVPGVYRNEGKDFVT------RKAFNTAA------GFAD-ATDVPAAVVSGALLAWDPVKQKAAWKVPY----  456 (560)
T ss_dssp             EEEEEEEECCEEECCCGGGCCC------CSSCCCSS------CGGG-CCCCCGGGCEEEEEEEETTTTEEEEEEEE----
T ss_pred             EEECCCCCCCCEEECCCCCCCC------CCCCCCCC------CCCC-CCCCCCCCCCCCEEEEECCCCEEEEECCC----
T ss_conf             1653510166200014666444------44423466------7666-66788766666468870778837310257----


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCC-EEEEEECC
Q ss_conf             566689999966799987799899999489829999988851478980678986369865499999-39999369
Q 004581          512 HDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNN-VLIITTSS  585 (744)
Q Consensus       512 ~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~-~l~~~~~d  585 (744)
                              ......-..+-.+.++++++.||.++-+|.++++.++.+.......-.-+.+.. +|+ ++++....
T Consensus       457 --------~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~-dGkqyv~v~aG~  522 (560)
T d1kv9a2         457 --------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL-AGRQYVAIMAGW  522 (560)
T ss_dssp             --------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEEEEEECC
T ss_pred             --------CCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEE-CCEEEEEEEECC
T ss_conf             --------888877405987998999778981999999998582799899995516779998-999999999177

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.09  E-value=0.00012  Score=38.50  Aligned_cols=114  Identities=16%  Similarity=0.147  Sum_probs=61.4

Q ss_pred             CCCEEEEEECCCEEEEEEC-CCCCEEEEEEECCCCCCC---CCCEEEEEEEEECCC-----EEEEECCCCCEEEEECCCC
Q ss_conf             9998999828990999986-689359999814799888---995259999990599-----2999839997999729986
Q 004581          141 DGNMLYSGSSDGYIRSWDA-KLGYEIYRITVGLGGLGS---GPELCIWSLLSLRCG-----TLVSADSTGSVQFWDSRHG  211 (744)
Q Consensus       141 dg~~l~t~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~-----~l~s~~~dg~i~iwd~~~~  211 (744)
                      +|.+.++.+.++.+...|. ++|+.+.++.........   .....-..+++.++.     +++.++.|+.|.-.|.++|
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCC
T ss_conf             99999951789968999579988778870387886434321356666516983279988629999807987685436568


Q ss_pred             CEEEEEECCCCCE-EEEEECC--CCCEEEEECC------CCEEEEEECCCCC
Q ss_conf             2489862166532-5999848--9997995437------9819999810476
Q 004581          212 TLLQAHSFHKGDV-NALAAAP--SHNRVFSTGS------DGQVILYKASCES  254 (744)
Q Consensus       212 ~~~~~~~~h~~~v-~~l~~~~--~~~~l~~~~~------dg~i~iw~~~~~~  254 (744)
                      +.+..+....... ..+.-.|  .+..++++..      .|.|+-+|..+++
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~  193 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             CEECCCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCEEEEECCCCC
T ss_conf             4102310146555642245881777758993023444335732898878885

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.78  E-value=0.00043  Score=35.21  Aligned_cols=55  Identities=13%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             CCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf             9829999988851478980678986369865499999399993698399999688865
Q 004581          541 FGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVYVFDVEAKQL  598 (744)
Q Consensus       541 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~iwd~~~~~~  598 (744)
                      .|.|.-+|+.+++..+..+...  +...-..+. .+.++++++.|+.++.||.++|+.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~--p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL--PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS--CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCCCEEEECCCCC--CCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCE
T ss_conf             7759998078995873267799--974501697-698699967999699999999868

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.69  E-value=0.00061  Score=34.37  Aligned_cols=25  Identities=12%  Similarity=0.286  Sum_probs=13.2

Q ss_pred             EEEECCCCEEEEEECCCCCEEEEEE
Q ss_conf             5873399708999765780538960
Q 004581            8 LFSSSIDGSVSEWDLYDLKQKIVLQ   32 (744)
Q Consensus         8 l~~~~~dg~i~iwd~~~~~~~~~~~   32 (744)
                      +.+||..|.|+++-+.+++.+..+.
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ip   40 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVP   40 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEE
T ss_conf             9407866338999548863587701

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=0.001  Score=33.10  Aligned_cols=130  Identities=12%  Similarity=0.130  Sum_probs=59.5

Q ss_pred             CEEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf             71999995079832684013675574899997169998999828990999986689359999814799888995259999
Q 004581          107 GCVRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSL  186 (744)
Q Consensus       107 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i  186 (744)
                      ..|.|.|+.......  +.-..-+.    .-.+|..+.||.-+ ..++.++|+++.+.+..+.         ....|.--
T Consensus        45 ~~VvIidl~n~~~~~--Rrpi~Ads----AIMhP~~~IiALra-g~~LQiFnletK~klks~~---------~~e~VvfW  108 (327)
T d1utca2          45 AQVVIIDMNDPSNPI--RRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT---------MTDDVTFW  108 (327)
T ss_dssp             EEEEEEETTSTTSCE--EEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE---------CSSCCCEE
T ss_pred             CEEEEEECCCCCCCE--ECCCCHHH----HHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE---------CCCCCEEE
T ss_conf             439999889987633--14436166----53088875799962-8868998446822111587---------68885799


Q ss_pred             EEECCCEEEEECCCCCEEEEECCC-CCEEEEEECCC----CCEEEEEECCCCCEEEEEC-------CCCEEEEEECCCC
Q ss_conf             990599299983999799972998-62489862166----5325999848999799543-------7981999981047
Q 004581          187 LSLRCGTLVSADSTGSVQFWDSRH-GTLLQAHSFHK----GDVNALAAAPSHNRVFSTG-------SDGQVILYKASCE  253 (744)
Q Consensus       187 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~----~~v~~l~~~~~~~~l~~~~-------~dg~i~iw~~~~~  253 (744)
                      .|..+..|+..+ +..|.-|+++. ..+...+.-|.    ..|..-..+++.++++..|       ..|.+.+|..+.+
T Consensus       109 kWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         109 KWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             EESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             EECCCCEEEEEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf             944798899991-881699735699985266232101248638998989999889999571378830588889980228

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.40  E-value=0.0015  Score=32.06  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             EEEEECCC-EEEEECCC-CCEEEEECCCCCEEEEEECC-CCCEEEEEECCCCCEEEEECCC------CEEEEEECCCC
Q ss_conf             99990599-29998399-97999729986248986216-6532599984899979954379------81999981047
Q 004581          185 SLLSLRCG-TLVSADST-GSVQFWDSRHGTLLQAHSFH-KGDVNALAAAPSHNRVFSTGSD------GQVILYKASCE  253 (744)
Q Consensus       185 ~i~~~~~~-~l~s~~~d-g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~~~~~d------g~i~iw~~~~~  253 (744)
                      ...+.+++ .++.|+.+ ..+.+||..+.+....-... ...-.+.+..+|+..++.++.+      ..+.+||....
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             EEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCC
T ss_conf             899946886898636888621675675574421565664210130355317826652136633354320566348889

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.36  E-value=0.0017  Score=31.77  Aligned_cols=98  Identities=9%  Similarity=0.025  Sum_probs=47.0

Q ss_pred             EEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf             9999950798326840136755748999971699989998289-909999866893599998147998889952599999
Q 004581          109 VRIYRITDSDELIYHRSLPRVSGRVLSVTWSADGNMLYSGSSD-GYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLL  187 (744)
Q Consensus       109 i~iwd~~~~~~~~~~~~l~~h~~~V~~i~~s~dg~~l~t~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  187 (744)
                      +.+||..++.-.........|.......++.++|.+++.|+.+ ..+.+||..+..-...-..       .....-...+
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~-------~~~r~~~~~~  126 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM-------QVARGYQSSA  126 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC-------SSCCSSCEEE
T ss_pred             EEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCC-------CCCCCCCCEE
T ss_conf             999988889686667789874452568999468868986368886216756755744215656-------6421013035


Q ss_pred             EECCC-EEEEECCC------CCEEEEECCCCCE
Q ss_conf             90599-29998399------9799972998624
Q 004581          188 SLRCG-TLVSADST------GSVQFWDSRHGTL  213 (744)
Q Consensus       188 ~~~~~-~l~s~~~d------g~i~iwd~~~~~~  213 (744)
                      ..+|+ .++.++.+      ..+.+||..+.+.
T Consensus       127 ~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         127 TMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             ECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EECCCCEEEECCCCCCCCCCCEEEEECCCCCCE
T ss_conf             531782665213663335432056634888955

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.21  E-value=0.0026  Score=30.78  Aligned_cols=74  Identities=12%  Similarity=0.049  Sum_probs=41.4

Q ss_pred             CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCE----------EEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEE
Q ss_conf             9667999877998999994-898299999888514----------78980678986369865499999399993698399
Q 004581          521 PPITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQ----------HWFISRLEGASVTAAGFPPQNNNVLIITTSSNQVY  589 (744)
Q Consensus       521 ~~i~~l~~s~dg~~las~~-~dg~i~iwd~~~~~~----------~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d~~i~  589 (744)
                      .....+.++|||+|+++++ .+.++.|+|++....          ........+..+.+-+|.. .|+-..+-.-|.+|.
T Consensus       275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~  353 (459)
T d1fwxa2         275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVV  353 (459)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEE
T ss_pred             CCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC-CCEEEEEEECCCEEE
T ss_conf             9877338899997899938858957999822535665046884521796113576766203389-842999861231699


Q ss_pred             EEECCC
Q ss_conf             999688
Q 004581          590 VFDVEA  595 (744)
Q Consensus       590 iwd~~~  595 (744)
                      -|++..
T Consensus       354 kw~~~~  359 (459)
T d1fwxa2         354 KWNIED  359 (459)
T ss_dssp             EEEHHH
T ss_pred             EEECCH
T ss_conf             973440

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.0027  Score=30.62  Aligned_cols=89  Identities=12%  Similarity=0.127  Sum_probs=54.2

Q ss_pred             CCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf             99099998668935999981479988899525999999059929998399979997299862489862166532599984
Q 004581          151 DGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHGTLLQAHSFHKGDVNALAAA  230 (744)
Q Consensus       151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~  230 (744)
                      ...+.+.|+..+....+-..       ..+.    .-.+|...+++--....++++|+++.+.+..+... .+|.--.|-
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi-------~Ads----AIMhP~~~IiALrag~~LQiFnletK~klks~~~~-e~VvfWkWi  111 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI-------SADS----AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI  111 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC-------CCSE----EEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEES
T ss_pred             CCEEEEEECCCCCCCEECCC-------CHHH----HHCCCCCCEEEEECCCEEEEEEHHHHHHHCEEECC-CCCEEEEEC
T ss_conf             84399998899876331443-------6166----53088875799962886899844682211158768-885799944


Q ss_pred             CCCCEEEEECCCCEEEEEECCCC
Q ss_conf             89997995437981999981047
Q 004581          231 PSHNRVFSTGSDGQVILYKASCE  253 (744)
Q Consensus       231 ~~~~~l~~~~~dg~i~iw~~~~~  253 (744)
                      .+. .|+..+ +..|+-|+++..
T Consensus       112 s~~-~L~lVT-~taVYHW~~~g~  132 (327)
T d1utca2         112 SLN-TVALVT-DNAVYHWSMEGE  132 (327)
T ss_dssp             SSS-EEEEEC-SSEEEEEESSSS
T ss_pred             CCC-EEEEEC-CCCEEEECCCCC
T ss_conf             798-899991-881699735699

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.78  E-value=0.0063  Score=28.53  Aligned_cols=28  Identities=11%  Similarity=0.243  Sum_probs=11.0

Q ss_pred             EEEEEECCCCCEEEEEE-CCCCEEEEECC
Q ss_conf             67999877998999994-89829999988
Q 004581          523 ITKMFTSSDGQWLAAVN-CFGDVYIFNLE  550 (744)
Q Consensus       523 i~~l~~s~dg~~las~~-~dg~i~iwd~~  550 (744)
                      .+.++++||+++|..+. ..+.|++|+++
T Consensus       208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         208 ANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCEEEECCCCCEEEEEECCCCEEEEEEEC
T ss_conf             64348889999999996788939999968

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.57  E-value=0.0089  Score=27.67  Aligned_cols=83  Identities=12%  Similarity=0.141  Sum_probs=55.2

Q ss_pred             CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCEE
Q ss_conf             99199999469711221056864556668999996679998779989999948982999998885147898067898636
Q 004581          488 DRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNCFGDVYIFNLEIQRQHWFISRLEGASVT  567 (744)
Q Consensus       488 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  567 (744)
                      .|.+.-+|+.+++.+.+....            .++..-..+-.+.++++++.||.++-+|.++++.++.+.......-.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~------------~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~  532 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP  532 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES------------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             CCEEEEECCCCCCEEEECCCC------------CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf             775999807899587326779------------99745016976986999679996999999998686798899996216


Q ss_pred             EEEECCCCCC-EEEEEE
Q ss_conf             9865499999-399993
Q 004581          568 AAGFPPQNNN-VLIITT  583 (744)
Q Consensus       568 ~l~~sp~d~~-~l~~~~  583 (744)
                      -+.|.. +|+ |+++..
T Consensus       533 P~ty~~-~G~qYv~i~a  548 (582)
T d1flga_         533 PITWEQ-DGEQYLGVTV  548 (582)
T ss_dssp             CEEEEE-TTEEEEEEEE
T ss_pred             CEEEEE-CCEEEEEEEE
T ss_conf             779998-9999999993

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.012  Score=26.87  Aligned_cols=115  Identities=7%  Similarity=-0.019  Sum_probs=51.2

Q ss_pred             CCCEEEEEECCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC--CCCEE
Q ss_conf             521899910899899991-799199999469711221056864556668999996679998779989999948--98299
Q 004581          469 FAHSMIFSYDSSQLIIAG-HDRRIYVVDVSSSELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAAVNC--FGDVY  545 (744)
Q Consensus       469 ~v~~i~~spd~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las~~~--dg~i~  545 (744)
                      .+..+++.+.+..|.... ..+.|.+.++........+..           .......+++.|...+|.....  .+.|.
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~-----------~~~~P~~l~vd~~~g~ly~~~~~~~~~I~  146 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-----------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK  146 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-----------TTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCCEEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECC-----------CCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf             8546898642652899954899998576489537888727-----------99883369998003948871269973026


Q ss_pred             EEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEE-ECCCEEEEEECCCC
Q ss_conf             9998885147898067898636986549999939999-36983999996888
Q 004581          546 IFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIIT-TSSNQVYVFDVEAK  596 (744)
Q Consensus       546 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~-~~d~~i~iwd~~~~  596 (744)
                      -.+++.......... .-..+..+++.+ .++.|..+ ...+.|...++.+.
T Consensus       147 r~~~dGs~~~~l~~~-~~~~p~gl~iD~-~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         147 KGGLNGVDIYSLVTE-NIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             EEETTSCCEEEEECS-SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSC
T ss_pred             EECCCCCCEECCCCC-CCCEEEEEEEEC-CCCEEEEECCCCCEEEEEECCCC
T ss_conf             863688834412004-532016998613-35699995289679999989999

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.016  Score=26.16  Aligned_cols=13  Identities=15%  Similarity=-0.059  Sum_probs=4.5

Q ss_pred             EEEEEECCCCCEE
Q ss_conf             6799987799899
Q 004581          523 ITKMFTSSDGQWL  535 (744)
Q Consensus       523 i~~l~~s~dg~~l  535 (744)
                      +..+++.|...++
T Consensus       124 p~~l~vdp~~g~l  136 (263)
T d1npea_         124 PRGIVTDPVRGNL  136 (263)
T ss_dssp             EEEEEEETTTTEE
T ss_pred             CCEEEEECCCCCE
T ss_conf             7279992566927

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.90  E-value=0.045  Score=23.60  Aligned_cols=78  Identities=13%  Similarity=0.111  Sum_probs=37.7

Q ss_pred             CCCCEEEEEECCCCCEEEEEE-CCC--CEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECC----CEEEEE
Q ss_conf             999667999877998999994-898--2999998885147898067898636986549999939999369----839999
Q 004581          519 SEPPITKMFTSSDGQWLAAVN-CFG--DVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITTSS----NQVYVF  591 (744)
Q Consensus       519 ~~~~i~~l~~s~dg~~las~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~~d----~~i~iw  591 (744)
                      +...+..-.++..+.+|+... .++  .|+++++.++........ ..+.+..+...+ +...+.....+    .+++.|
T Consensus       333 ~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~-~~~sv~~~~~~~-~~~~~~~~~ss~~tP~~~y~~  410 (430)
T d1qfma1         333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHC  410 (430)
T ss_dssp             CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEE
T ss_pred             CCCCEEEEEEEEECCEEEEEEECCCEEEEEEEECCCCCEEEECCC-CCCEEEECCCCC-CCCEEEEEECCCCCCCEEEEE
T ss_conf             675255567897799999999918870899998999958885488-871686414898-899899998189998769999


Q ss_pred             ECCCCCC
Q ss_conf             9688865
Q 004581          592 DVEAKQL  598 (744)
Q Consensus       592 d~~~~~~  598 (744)
                      |+.++++
T Consensus       411 Dl~t~~~  417 (430)
T d1qfma1         411 DLTKEEL  417 (430)
T ss_dssp             ETTSSSC
T ss_pred             ECCCCCC
T ss_conf             9999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.93  E-value=0.076  Score=22.32  Aligned_cols=71  Identities=14%  Similarity=0.015  Sum_probs=27.7

Q ss_pred             CEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEE-CCCEEEEEECCCCC
Q ss_conf             667999877998999994-89829999988851478980678986369865499999399993-69839999968886
Q 004581          522 PITKMFTSSDGQWLAAVN-CFGDVYIFNLEIQRQHWFISRLEGASVTAAGFPPQNNNVLIITT-SSNQVYVFDVEAKQ  597 (744)
Q Consensus       522 ~i~~l~~s~dg~~las~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~d~~~l~~~~-~d~~i~iwd~~~~~  597 (744)
                      ....+++.+.++.|..++ ..+.|...++++......+...+  .+..+++.   +..|..+. ..+.|...|..+++
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~---~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY---GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC--SEEEEEEE---TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCC--CCEEEEEE---CCEEEEEECCCCEEEEEECCCCC
T ss_conf             553079950475899992899999999999997699988999--86899999---99999999999979999898995

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.20  E-value=0.14  Score=20.80  Aligned_cols=116  Identities=8%  Similarity=0.091  Sum_probs=54.9

Q ss_pred             CCCEEEE--EEC-CC-EEEEEECCCCEEEEECC---CC----CEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf             5218999--108-99-89999179919999946---97----11221056864556668999996679998779989999
Q 004581          469 FAHSMIF--SYD-SS-QLIIAGHDRRIYVVDVS---SS----ELLHTFTPCREEHDREIQPSEPPITKMFTSSDGQWLAA  537 (744)
Q Consensus       469 ~v~~i~~--spd-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~las  537 (744)
                      .+..+|+  ++. +. ++++...+|.+..|.+.   .+    +++++|..            ...+..+.+....+.|..
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~------------~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM------------NSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC------------SSCEEEEEEETTTTEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCC------------CCCCCEEEEECCCCCEEE
T ss_conf             65699977427778079999758860899999747897255576303588------------886216998178894999


Q ss_pred             EECCCCEEEEECCCC--CEEEEE---EC-CCCCCEEEEEECCC-CCC-EE-EEEECCCEEEEEECCCC
Q ss_conf             948982999998885--147898---06-78986369865499-999-39-99936983999996888
Q 004581          538 VNCFGDVYIFNLEIQ--RQHWFI---SR-LEGASVTAAGFPPQ-NNN-VL-IITTSSNQVYVFDVEAK  596 (744)
Q Consensus       538 ~~~dg~i~iwd~~~~--~~~~~~---~~-~~~~~v~~l~~sp~-d~~-~l-~~~~~d~~i~iwd~~~~  596 (744)
                      +-.+.-|+.++.+..  .....+   .. .-...+-.|+.-.. ++. +| ++.-.++++.+||..+.
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf             54755238888045777662243113675445785453799847998599997379976999956788

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.87  E-value=0.19  Score=19.97  Aligned_cols=96  Identities=18%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCCEEEEECCCC
Q ss_conf             48999971699989998289909999866893599998147998889952599999905992999839997999729986
Q 004581          132 RVLSVTWSADGNMLYSGSSDGYIRSWDAKLGYEIYRITVGLGGLGSGPELCIWSLLSLRCGTLVSADSTGSVQFWDSRHG  211 (744)
Q Consensus       132 ~V~~i~~s~dg~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~l~s~~~dg~i~iwd~~~~  211 (744)
                      .|..++|+.|  .|+... ++.+..++..+-.......        .....+..+.+.|.. ++....++.+.++++..+
T Consensus        88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~--------~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~  155 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVT--------SFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTK  155 (381)
T ss_dssp             TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEE--------ECSSCEEEEEECSSE-EEEEETTSEEEEEETTTC
T ss_pred             CEEEEEEECC--EEEEEE-CCCEEEEEEECCCCCCCCC--------CCCCCCCCEECCCCE-EEEEECCCCEEEEEECCC
T ss_conf             8689986189--899995-8978999851001454465--------545561110218860-699965897789994158


Q ss_pred             CEEEEEEC-----CCCCEEEEEECCCCCEEEEE
Q ss_conf             24898621-----66532599984899979954
Q 004581          212 TLLQAHSF-----HKGDVNALAAAPSHNRVFST  239 (744)
Q Consensus       212 ~~~~~~~~-----h~~~v~~l~~~~~~~~l~~~  239 (744)
                      .......+     -.+.+.+++|++.+..++++
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         156 STKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             CEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             CCCCCCCCCCEEEECCCCEEEEEECCCEEEEEE
T ss_conf             644444775238733892699996896899981

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.86  E-value=0.19  Score=19.96  Aligned_cols=61  Identities=15%  Similarity=0.123  Sum_probs=25.0

Q ss_pred             CCCEEEEEECCCCEEEEECCCCCEE----EEEECCCCCCEEEEEECCCCCCEE-EEEECCCEEEEEECC
Q ss_conf             9989999948982999998885147----898067898636986549999939-999369839999968
Q 004581          531 DGQWLAAVNCFGDVYIFNLEIQRQH----WFISRLEGASVTAAGFPPQNNNVL-IITTSSNQVYVFDVE  594 (744)
Q Consensus       531 dg~~las~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~l~~sp~d~~~l-~~~~~d~~i~iwd~~  594 (744)
                      ++.+|+..-.++.|....++.....    ..........+..+++.| ||..| ++....|  ++|.-.
T Consensus       368 ~g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gp-DGs~lyv~~d~~G--~i~r~~  433 (450)
T d1crua_         368 ENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASP-DGNVLYVLTDTAG--NVQKDD  433 (450)
T ss_dssp             TTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECT-TSSCEEEEECSSC--CEECTT
T ss_pred             CCCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEECC-CCCEEEEEECCCC--CEECCC
T ss_conf             79799999868979999983898625678884057897864789989-9988999987899--876478

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.08  E-value=0.41  Score=18.06  Aligned_cols=23  Identities=9%  Similarity=0.290  Sum_probs=9.6

Q ss_pred             CCCEEEEEECCC-----EEEEEECCCCC
Q ss_conf             999399993698-----39999968886
Q 004581          575 NNNVLIITTSSN-----QVYVFDVEAKQ  597 (744)
Q Consensus       575 d~~~l~~~~~d~-----~i~iwd~~~~~  597 (744)
                      ++++++.++.++     .+.+||+++.+
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEECCCCCEECCEEEEEECCCCE
T ss_conf             9999999567999545639999799998

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.18  E-value=0.67  Score=16.86  Aligned_cols=25  Identities=20%  Similarity=0.494  Sum_probs=10.6

Q ss_pred             EEEEEECCCCCCEEEEEECCCEEEEE
Q ss_conf             36986549999939999369839999
Q 004581          566 VTAAGFPPQNNNVLIITTSSNQVYVF  591 (744)
Q Consensus       566 v~~l~~sp~d~~~l~~~~~d~~i~iw  591 (744)
                      |+-+-+.| ++++++++-.||.-.+|
T Consensus       240 I~~~~Y~P-dd~L~iiakrdG~s~lF  264 (313)
T d2hu7a1         240 ITWLGYLP-DGRLAVVARREGRSAVF  264 (313)
T ss_dssp             EEEEEECT-TSCEEEEEEETTEEEEE
T ss_pred             EEEEEECC-CCCEEEEEECCCCHHEE
T ss_conf             77411378-77279998207702224