Citrus Sinensis ID: 004622

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-
Protein Sequence
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQSRRLRFYWLLIQLARKFNMIVLASYPIGGSIVWLD
Secondary Structure (PSIPRED)
cccccHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHcccccHHccccHHHHHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHHcHHccccHHHHHcccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccEEEcccHHHHHHHHHHHHHHHHcEEEEEcccccccEEEcc
Coil and Loop (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGcafsalgrkEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKqdrsvtceydvsnsmssltvsesglnandkmsetsenhnksdicdsssqsrdvsetcsksshdpdlcngrsdeakggssvpvsksglhingklrevsenhngssdgsksthasrdaseinrqssddfdicngpidkasvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQilkedpmypealigRGTARAFQRELEAAISDFTEAiqsnpsagEAWKRRGQARAALGESVEAIQDLSKalefepnsadilhergivnfkfkdFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLssgsrtmmpHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIpssrnigakdciprmyvkrftdslpcvilskressgdktfLLQSRRLRFYWLLIQLARKFNMIVLAsypiggsivwld
Flexible Loop (DISEMBL)
mlkrklldsryrlnkthkticeidelvrvDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETsenhnksdicdsssqsrDVSEtcsksshdpdlcngrsdeakggssvpvsksgLHINGKLrevsenhngssdgsksthasrdaseinrqssddfdicNGPIDKAsvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklsfkWDMLKetsneakrnkkfcvtrisksksisvdfrlsrgiaqvnegkyASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTlmeilipssrnigakDCIPRMYVKRFTDSLPCvilskressgdktfllqsRRLRFYWLLIQLARKFNMIVLAsypiggsivwld
Low Complexity Region (SEG)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAkggssvpvsksgLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKlssdsaslndsntnsesyskssisdnkssdstesrsklsFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYhlrglllhglgqhKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQSRRLRFYWLLIQLARKFNMIVLASYPIGGSIVWLD
Disordered region (IsUnstruct)
*********RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ**SVTCE************************************************************************************************************************************************************************************************************KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF*************************************LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQSRRLRFYWLLIQLARKFNMIVLASYPIGGSIVWL*
Disordered Region (DISOPRED)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQSRRLRFYWLLIQLARKFNMIVLASYPIGGSIVWLD
Disordered Region (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNAN*************************************LCNGRS**********VSKSGLHINGKLREVS***********************RQSSDDFDICNGPIDKASVNER**************************************************KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS******************GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQSRRLRFYWLLIQLARKFNMIVLASYPIGGSIVWLD
Disordered Region (DISPRO)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQSRRLRFYWLLIQLARKFNMIVLASYPIGGSIVWLD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQSRRLRFYWLLIQLARKFNMIVLASYPIGGSIVWLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	741	2.2.26 [Sep-21-2011]
Q8NBP0	860	Tetratricopeptide repeat	yes	no	0.364	0.313	0.275	2e-22
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.306	0.243	0.243	1e-11
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.306	0.243	0.247	4e-11
Q96301	914	Probable UDP-N-acetylgluc	no	no	0.306	0.248	0.247	4e-10
Q58741	314	TPR repeat-containing pro	yes	no	0.245	0.579	0.268	8e-10
Q54VG4	334	Small glutamine-rich tetr	no	no	0.156	0.347	0.316	2e-09
Q6YZI0	927	Probable UDP-N-acetylgluc	no	no	0.306	0.244	0.243	2e-09
Q04737	248	TPR repeat-containing pro	N/A	no	0.218	0.653	0.265	4e-09
O82422	944	Probable UDP-N-acetylgluc	N/A	no	0.306	0.240	0.239	9e-09
Q68FQ7	659	RNA polymerase II-associa	no	no	0.302	0.339	0.270	2e-08

>sp|Q8NBP0|TTC13_HUMAN Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 334 SDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN 393
           SD +   S+   S LS   + +   +      K+F       + + S +  L+     + 
Sbjct: 100 SDCEPKGSSPCDSLLSLNTEKILSQAKSIAEQKRFPFA----TDNDSTNEELAIAYVLIG 155

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQSNPSA 448
            G Y  AI  F  +L+E+P    A+ GRG A   +     +  E A+ + +  I   P  
Sbjct: 156 SGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEPDR 215

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
            E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+  A ED   
Sbjct: 216 PEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQ 274

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            ++L+K    A  Y GL     G  K+A E+  +A++   +F++A+  L Q Y++L N E
Sbjct: 275 SLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFE 334

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            A E  Q+ L +++   +   LRG++L+  G  ++A+K+ 
Sbjct: 335 AATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNF 374

Homo sapiens (taxid: 9606)

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 7/234 (2%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F+EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   +++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWN 622
            A+ C ++ L +   F  A +   + L  LG   K   D++ G       L +N
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALCYN 296

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 7/234 (2%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWN 622
            A+ C ++ L +   F  A +   + L  LG   K   D++ G       L +N
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 7/234 (2%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+A A+++++ +L++D    EA IG+G     Q +   A   F+EAI+ +P    A    
Sbjct: 58  KFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHC 117

Query: 456 GQARAALGESVEAIQDLSKAL----EFEPNS---ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL     ++P +   A +L + G       +    ++    
Sbjct: 118 GILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYE 177

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 178 ALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLE 237

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWN 622
            A+ C ++ L +   F  A +   + L  LG   K   D++ G       L +N
Sbjct: 238 MAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYN 291

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1

 Score = 66.6 bits (161), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 4/186 (2%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G+Y  A+ I D+ILK+ P    A   +G     + +L+ ++  F  A++ NP   ++   
Sbjct: 127 GEYDYALKIIDKILKKYPKSAIAWAEKGEILYREGKLKKSLECFDNALKINPKDCQSLLY 186

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF--KFKDFNAAVEDLSACVKL 512
           +G+    LG   EA++ L K   FE N+ DI     I+         N A+E     +KL
Sbjct: 187 KGEILFKLGRYGEALKCLKKV--FERNNKDIRALMYIIQILIYLGRLNQALEYTKKALKL 244

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           + ++   Y Y G+ L+ +G+Y +A +   K ++++ N  +AW       + L    +A+E
Sbjct: 245 NPDDPLLYLYKGIILNKLGKYNEAIKYFDKVLEINPNIPDAWNGKAIALEKLGKINEAIE 304

Query: 573 CLQQVL 578
           C  + L
Sbjct: 305 CYNRAL 310

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425
           +KF  ++  + K+I+   + + G A++NEGK+  A+S +++ +  D         R    
Sbjct: 131 QKFMESKAGEVKAIAEKLK-NEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATY 189

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482
           +  +  E +I D  EAI+ NP+ G+A+ R G A  +LG+  EA++  +KA+E EPN+
Sbjct: 190 SALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNN 246

May act as a co-chaperone and regulate the ATPase activity of heat shock proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 7/234 (2%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+A A+ +++ +L++D    EALIG+G     Q     AI  F EA++ +P    A    
Sbjct: 49  KFAEALQLYNNVLEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNACALTYC 108

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KA   +P+        A +L + G       +    ++    
Sbjct: 109 GMIYKDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCE 168

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +++D     AY  LG+  S + ++  A   + KA      + EA+ ++   Y++    E
Sbjct: 169 ALEVDSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELE 228

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWN 622
            A+ C ++ L I   F  A +   + L  LG   K   D++ G       L +N
Sbjct: 229 AAIACYERCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYN 282

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q04737|Y751_SYNY3 TPR repeat-containing protein slr0751 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0751 PE=4 SV=1

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 4/166 (2%)

Query: 357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE 416
           E  N A+  + F V       S    +  +RG+A    G    AI+ + + +  D  Y  
Sbjct: 73  EAGNYAEAVELFSVVLNLSPDSPETHY--NRGLAWERLGNVDQAIADYGRSIALDRYYIP 130

Query: 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL 476
             I RG   + Q++   AI DFT+AI  +P+  +A+  R  +   LG+  +AI D ++ L
Sbjct: 131 PYINRGNLYSQQQDHHTAIQDFTQAITYDPNRYKAYYNRANSYFQLGQYAQAIADYNRVL 190

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDL--SACVKLDKENKSAY 520
              P+  + ++ RG+ +F+    +++ +DL  SA   L++ ++ +Y
Sbjct: 191 VLRPDYINAIYNRGLAHFQAGQLDSSRQDLLFSAQAYLNRGDRRSY 236

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1

 Score = 62.8 bits (151), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 7/234 (2%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+A A+ ++  +L +D    EALIG+G     Q     A+  FTEA++ +P    A    
Sbjct: 49  KFADALQLYTTVLDKDGANVEALIGKGICLQAQSLPRQALDCFTEAVKVDPKNACALTHC 108

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KA   +P+        A +L + G       +    ++    
Sbjct: 109 GMIYKDEGHLVEAAEAYQKARSADPSYKAASEFLAIVLTDLGTSLKLAGNTEDGIQKYCE 168

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +++D     AY  LG+  S + ++  A   + KA      + EA+ ++   Y++    +
Sbjct: 169 ALEVDSHYAPAYYNLGVVYSEMMQFDVALTCYEKAALERPLYAEAYCNMGVIYKNRGELD 228

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWN 622
            A+ C  + L I   F  A +   + L  LG   K   D++ G       L +N
Sbjct: 229 AAIACYDRCLTISPNFEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYN 282

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 13/237 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +GKY  AI  + + +  DP  P     R +A    ++   A SD   AI  + 
Sbjct: 139 KGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSR 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVED 505
           S  +A+ RRG AR AL +  +A +D  K LE EP++ +  +E R I        N+  +D
Sbjct: 199 SYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENSHPKD 258

Query: 506 LSACVK-LDKENKS-----------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++A +K  + E K+           A   LG      G+Y++A E + + I  D      
Sbjct: 259 IAAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALL 318

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
             +    Y  +   E+A     Q + +D  +SKA+  RG     LG+  +A +D  +
Sbjct: 319 PANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFET 375

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
255567975	1101	tetratricopeptide repeat protein, tpr, p	0.775	0.522	0.662	0.0
225438920	1068	PREDICTED: tetratricopeptide repeat prot	0.734	0.509	0.645	0.0
224071273	526	predicted protein [Populus trichocarpa]	0.708	0.998	0.676	0.0
449448472	1046	PREDICTED: tetratricopeptide repeat prot	0.696	0.493	0.580	1e-175
449520722	1046	PREDICTED: tetratricopeptide repeat prot	0.696	0.493	0.580	1e-175
357482705	1033	Tetratricopeptide repeat protein [Medica	0.676	0.484	0.578	1e-173
357482701	1062	Tetratricopeptide repeat protein [Medica	0.676	0.471	0.578	1e-173
357482703	798	Tetratricopeptide repeat protein [Medica	0.676	0.627	0.578	1e-173
356514306	1050	PREDICTED: tetratricopeptide repeat prot	0.676	0.477	0.571	1e-163
356496945	1047	PREDICTED: tetratricopeptide repeat prot	0.682	0.483	0.572	1e-161

>gi|255567975|ref|XP_002524965.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis] gi|223535800|gb|EEF37462.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/580 (66%), Positives = 453/580 (78%), Gaps = 5/580 (0%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLC+ R+WSKAIR+LDSLL+QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCASRDWSKAIRVLDSLLSQSCTIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQLDP LLQAYILKG AFS+LGRK++AL VW++GYEHAL QSADLKQ LELEELL  
Sbjct: 61  DKALQLDPMLLQAYILKGRAFSSLGRKDDALLVWQQGYEHALRQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQ+R++     V+ S + +  +E   + N K +E S+N ++ SDI +S  +S D SE C
Sbjct: 121 AKQERNIGLRDHVTES-TPMNTTEFATHTNGKSNEASKNRDQLSDISNSCRESGDGSEIC 179

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SK   + D  N   D+A G S + + +   H+NGK  +V  NH+   D SK  + SRD  
Sbjct: 180 SKFGGNFDAMNVIRDKAGGESPITIPECRPHMNGKSDDVCTNHDKLGDKSKLHNESRDTY 239

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           +I   S D+  I N    KA  + +  +  NGTH+  DK+S DS S N  +  S   SKS
Sbjct: 240 KICCNSGDNCAIQNYLSRKAEGDVKTDK--NGTHNFIDKIS-DSESCNVLSDTSVPSSKS 296

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S     S D+++ R KLS K D+  E  +E K++KKF VTRISK+KSI+VDFRLSRGIAQ
Sbjct: 297 STISISSGDTSDIRVKLSNKTDIPNEAGDETKKSKKFSVTRISKTKSITVDFRLSRGIAQ 356

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYASAISIFDQIL EDP YPEALIGRGTA AFQRELEAAI+DF++AIQSNP AGEA
Sbjct: 357 VNEGKYASAISIFDQILTEDPTYPEALIGRGTAHAFQRELEAAIADFSKAIQSNPLAGEA 416

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES+EAI DL+KALEFEPNSADILHERGIVNFKFKDF+AAV+DLSACVK
Sbjct: 417 WKRRGQARAALGESIEAIHDLTKALEFEPNSADILHERGIVNFKFKDFDAAVQDLSACVK 476

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           LDK+NKSAYTYLGLALSS GEYKKAEEAHLK+IQLDR+FLE W HLTQFYQDLAN  KA 
Sbjct: 477 LDKDNKSAYTYLGLALSSTGEYKKAEEAHLKSIQLDRSFLEGWAHLTQFYQDLANLTKAF 536

Query: 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           EC++QVL ID RF+KAYHL GLLLHG+G+H+KAIK+LS G
Sbjct: 537 ECIKQVLQIDARFAKAYHLHGLLLHGMGEHRKAIKELSLG 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438920|ref|XP_002279290.1| PREDICTED: tetratricopeptide repeat protein 13-like [Vitis vinifera]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/581 (64%), Positives = 445/581 (76%), Gaps = 37/581 (6%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           M SAI+ R ELAKLCS R+WSKAIR+LDSLLAQS  IQDICNRAFCYS+LELHKHVIRDC
Sbjct: 1   MESAISERQELAKLCSCRDWSKAIRVLDSLLAQSCVIQDICNRAFCYSKLELHKHVIRDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQL+PTLLQAYILKG A SALG+KE+AL VWE+GY HA+ QSADLKQFLELEELL  
Sbjct: 61  DKALQLEPTLLQAYILKGHALSALGKKEDALLVWEQGYGHAVRQSADLKQFLELEELL-- 118

Query: 153 AKQDRSVTCE-YDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETC 211
            KQ+R +TCE + + +  SS++VSES L+ N+K + T +N +K +         D SE C
Sbjct: 119 -KQNRRITCENHAMESPESSISVSESALHVNEKPNSTHKNDSKLN---------DESELC 168

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           S+SS   +                       I+ K     +N +  +D S+    S D S
Sbjct: 169 SESSDTSE-----------------------IHCKPNSTHKNDSKLNDESELCSESSDTS 205

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           EI+ ++ D  D  +   D  + NE+   ++NGT+D+  K S +S   ++ N  SE  SKS
Sbjct: 206 EIHCKAFDTSDGHDELRDTVNGNEKLNSESNGTYDIFVKSSDESELCSELNDTSEQSSKS 265

Query: 332 SIS-DNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390
           S+   +KSSD +E R K S K+D+  E  +EA RNKKFCVTRISK+KSISVDFRLSRGIA
Sbjct: 266 SVVIHSKSSDISEVRRKSSNKYDIRSELGDEANRNKKFCVTRISKTKSISVDFRLSRGIA 325

Query: 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           QVNEG Y++AISIFDQILKEDP YPEAL+GRGTA AFQREL +AI+DFT+AI+SNPSA E
Sbjct: 326 QVNEGNYSNAISIFDQILKEDPTYPEALVGRGTAYAFQRELSSAIADFTKAIESNPSACE 385

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510
           AWKRRGQARAALGES EAI+DL+KALEFEPNS DILHERGIVNFKFKDFNAAVEDLSACV
Sbjct: 386 AWKRRGQARAALGESSEAIEDLTKALEFEPNSTDILHERGIVNFKFKDFNAAVEDLSACV 445

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
           +LDKENKSAYTYLGLALSSIGEYK+AEEAH+K+IQLD+NFLE W HLTQFYQDLAN  KA
Sbjct: 446 QLDKENKSAYTYLGLALSSIGEYKRAEEAHMKSIQLDQNFLEGWAHLTQFYQDLANPTKA 505

Query: 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           LEC+++VL ID+ F+KAYHLRGLL HG+G+HKKAI DLS G
Sbjct: 506 LECIERVLQIDEGFAKAYHLRGLLRHGMGEHKKAITDLSIG 546

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071273|ref|XP_002303385.1| predicted protein [Populus trichocarpa] gi|222840817|gb|EEE78364.1| predicted protein [Populus trichocarpa]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/529 (67%), Positives = 412/529 (77%), Gaps = 4/529 (0%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLCS R+WSKAIR+LDSLL QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCSSRDWSKAIRVLDSLLVQSCAIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDPTLLQAYILKG AFS+LGRK++AL VWE+GYEHALHQSADLKQ LELEELL  
Sbjct: 61  DRALQLDPTLLQAYILKGRAFSSLGRKDDALLVWEQGYEHALHQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQDRS  CE  V  S  S+  SES    + K  ETS++ NK SDI +  S SR+V    
Sbjct: 121 AKQDRSAGCETHVVESRLSMYASES--QPHSKSDETSKHQNKLSDISNLCSGSRNVLGIH 178

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SKS  + ++  G SDE  G S   V +SG H N K  E S+N + +SD S+     RDA 
Sbjct: 179 SKSGDNFEIHKGISDEV-GRSLKLVPESGCHTNEKSSETSKNPSKASDKSELCSELRDAP 237

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           EI  +S D+FD+ NG  DKA  N++ G   N  HD+ D  +  S S +  +  SE  S+ 
Sbjct: 238 EICCKSGDNFDMDNGLSDKAEGNQKPGILVNDNHDILDLPNHVSESCSGVSNASELSSRL 297

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S+      D++E  SK S K +M  E ++E K NKK CVTRISK+KSISVDFRLSRGIAQ
Sbjct: 298 SMIPGNLGDTSEILSKSSNKVNMHNEVTDETKGNKKLCVTRISKTKSISVDFRLSRGIAQ 357

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYA+AISIFDQILKEDP YPEALIGRGTARAF+REL +AI+DF++AI+SNPSAGEA
Sbjct: 358 VNEGKYATAISIFDQILKEDPTYPEALIGRGTARAFKRELGSAIADFSKAIESNPSAGEA 417

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES EAI DL+KALEFEPNSADILHERGIV++KFKDF+AAVEDLSACVK
Sbjct: 418 WKRRGQARAALGESAEAINDLTKALEFEPNSADILHERGIVSYKFKDFDAAVEDLSACVK 477

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
           LD +N SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR+FLEAW HLTQF
Sbjct: 478 LDMDNMSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRSFLEAWAHLTQF 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448472|ref|XP_004141990.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 338/582 (58%), Positives = 411/582 (70%), Gaps = 66/582 (11%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESGFSTVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS G
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIG 519

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520722|ref|XP_004167382.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 338/582 (58%), Positives = 411/582 (70%), Gaps = 66/582 (11%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESRFSAVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS G
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIG 519

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482705|ref|XP_003611639.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355512974|gb|AES94597.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 338/584 (57%), Positives = 407/584 (69%), Gaps = 83/584 (14%)

Query: 32  VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRD 91
           + A A + R ELAKLCS ++WSKAIRILDSL++QS  IQDICNRAFCYSQLELHKHVI+D
Sbjct: 1   MAAPATSQRTELAKLCSTKDWSKAIRILDSLISQSTAIQDICNRAFCYSQLELHKHVIKD 60

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151
           CD+A+QL+P LLQAYILKG AFSALGRK +AL VWE+GYE A H SADLKQ +ELEELL 
Sbjct: 61  CDRAIQLNPLLLQAYILKGHAFSALGRKADALLVWEQGYEQAQHHSADLKQLIELEELLV 120

Query: 152 AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS----SSQSRDV 207
            AKQ        + SN  + L++ ++        S++S N N ++ C+S    S  + D 
Sbjct: 121 KAKQ------AINSSNETNGLSIPQA-------KSDSSSNRNLTETCESQAKLSGNTSDK 167

Query: 208 SETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS 267
           SE   KS+   D  N  + E  GG S   SK    +NG    +      SSD S+S    
Sbjct: 168 SEVLLKSADKFDARNELNSE--GGES---SKCDGQVNGSPDIIDNLRYDSSDTSES---- 218

Query: 268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES 327
                           C+                        K+ ++S   +DSN  +E 
Sbjct: 219 ----------------CD------------------------KVLTNSGESSDSNDAAEI 238

Query: 328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSR 387
             K S              K +F      E S+EA+++KKF V R+SK+KSISVDFRLSR
Sbjct: 239 LRKPSF-------------KFTFP----SEKSSEARKSKKFSVARVSKTKSISVDFRLSR 281

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           GIA+VNEGKYA AISIFDQILKED  YPEALIGRGTA AF+REL +AI+DFT+AIQ NP+
Sbjct: 282 GIAEVNEGKYAHAISIFDQILKEDSAYPEALIGRGTAYAFKRELHSAIADFTKAIQYNPA 341

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           AGEAWKRRGQARAALGE VEAI+DL+KALEFEPN+ADILHERGIVNFKFK+FN AVEDLS
Sbjct: 342 AGEAWKRRGQARAALGEFVEAIEDLTKALEFEPNTADILHERGIVNFKFKEFNTAVEDLS 401

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
           ACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++QLD++FLEAWGHLTQFYQDL+  
Sbjct: 402 ACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKSFLEAWGHLTQFYQDLSKP 461

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
            KALECL QVL ID RF++AYHLRG+L H +G+H+KAIKDL++G
Sbjct: 462 TKALECLTQVLQIDGRFARAYHLRGVLFHAMGEHRKAIKDLTTG 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482701|ref|XP_003611637.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355512972|gb|AES94595.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 338/584 (57%), Positives = 407/584 (69%), Gaps = 83/584 (14%)

Query: 32  VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRD 91
           + A A + R ELAKLCS ++WSKAIRILDSL++QS  IQDICNRAFCYSQLELHKHVI+D
Sbjct: 1   MAAPATSQRTELAKLCSTKDWSKAIRILDSLISQSTAIQDICNRAFCYSQLELHKHVIKD 60

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151
           CD+A+QL+P LLQAYILKG AFSALGRK +AL VWE+GYE A H SADLKQ +ELEELL 
Sbjct: 61  CDRAIQLNPLLLQAYILKGHAFSALGRKADALLVWEQGYEQAQHHSADLKQLIELEELLV 120

Query: 152 AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS----SSQSRDV 207
            AKQ        + SN  + L++ ++        S++S N N ++ C+S    S  + D 
Sbjct: 121 KAKQ------AINSSNETNGLSIPQA-------KSDSSSNRNLTETCESQAKLSGNTSDK 167

Query: 208 SETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS 267
           SE   KS+   D  N  + E  GG S   SK    +NG    +      SSD S+S    
Sbjct: 168 SEVLLKSADKFDARNELNSE--GGES---SKCDGQVNGSPDIIDNLRYDSSDTSES---- 218

Query: 268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES 327
                           C+                        K+ ++S   +DSN  +E 
Sbjct: 219 ----------------CD------------------------KVLTNSGESSDSNDAAEI 238

Query: 328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSR 387
             K S              K +F      E S+EA+++KKF V R+SK+KSISVDFRLSR
Sbjct: 239 LRKPSF-------------KFTFP----SEKSSEARKSKKFSVARVSKTKSISVDFRLSR 281

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           GIA+VNEGKYA AISIFDQILKED  YPEALIGRGTA AF+REL +AI+DFT+AIQ NP+
Sbjct: 282 GIAEVNEGKYAHAISIFDQILKEDSAYPEALIGRGTAYAFKRELHSAIADFTKAIQYNPA 341

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           AGEAWKRRGQARAALGE VEAI+DL+KALEFEPN+ADILHERGIVNFKFK+FN AVEDLS
Sbjct: 342 AGEAWKRRGQARAALGEFVEAIEDLTKALEFEPNTADILHERGIVNFKFKEFNTAVEDLS 401

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
           ACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++QLD++FLEAWGHLTQFYQDL+  
Sbjct: 402 ACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKSFLEAWGHLTQFYQDLSKP 461

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
            KALECL QVL ID RF++AYHLRG+L H +G+H+KAIKDL++G
Sbjct: 462 TKALECLTQVLQIDGRFARAYHLRGVLFHAMGEHRKAIKDLTTG 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482703|ref|XP_003611638.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355512973|gb|AES94596.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 338/584 (57%), Positives = 407/584 (69%), Gaps = 83/584 (14%)

Query: 32  VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRD 91
           + A A + R ELAKLCS ++WSKAIRILDSL++QS  IQDICNRAFCYSQLELHKHVI+D
Sbjct: 1   MAAPATSQRTELAKLCSTKDWSKAIRILDSLISQSTAIQDICNRAFCYSQLELHKHVIKD 60

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151
           CD+A+QL+P LLQAYILKG AFSALGRK +AL VWE+GYE A H SADLKQ +ELEELL 
Sbjct: 61  CDRAIQLNPLLLQAYILKGHAFSALGRKADALLVWEQGYEQAQHHSADLKQLIELEELLV 120

Query: 152 AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS----SSQSRDV 207
            AKQ        + SN  + L++ ++        S++S N N ++ C+S    S  + D 
Sbjct: 121 KAKQ------AINSSNETNGLSIPQA-------KSDSSSNRNLTETCESQAKLSGNTSDK 167

Query: 208 SETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS 267
           SE   KS+   D  N  + E  GG S   SK    +NG    +      SSD S+S    
Sbjct: 168 SEVLLKSADKFDARNELNSE--GGES---SKCDGQVNGSPDIIDNLRYDSSDTSES---- 218

Query: 268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES 327
                           C+                        K+ ++S   +DSN  +E 
Sbjct: 219 ----------------CD------------------------KVLTNSGESSDSNDAAEI 238

Query: 328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSR 387
             K S              K +F      E S+EA+++KKF V R+SK+KSISVDFRLSR
Sbjct: 239 LRKPSF-------------KFTFP----SEKSSEARKSKKFSVARVSKTKSISVDFRLSR 281

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           GIA+VNEGKYA AISIFDQILKED  YPEALIGRGTA AF+REL +AI+DFT+AIQ NP+
Sbjct: 282 GIAEVNEGKYAHAISIFDQILKEDSAYPEALIGRGTAYAFKRELHSAIADFTKAIQYNPA 341

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           AGEAWKRRGQARAALGE VEAI+DL+KALEFEPN+ADILHERGIVNFKFK+FN AVEDLS
Sbjct: 342 AGEAWKRRGQARAALGEFVEAIEDLTKALEFEPNTADILHERGIVNFKFKEFNTAVEDLS 401

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
           ACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++QLD++FLEAWGHLTQFYQDL+  
Sbjct: 402 ACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKSFLEAWGHLTQFYQDLSKP 461

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
            KALECL QVL ID RF++AYHLRG+L H +G+H+KAIKDL++G
Sbjct: 462 TKALECLTQVLQIDGRFARAYHLRGVLFHAMGEHRKAIKDLTTG 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514306|ref|XP_003525847.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 331/579 (57%), Positives = 395/579 (68%), Gaps = 78/579 (13%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           R++LA+LC+ ++WSKAIR+LDSL++ S  IQD+CNRAFCYS+LELHKHVIRDCD+ALQLD
Sbjct: 16  RVDLARLCASKDWSKAIRVLDSLISHSNAIQDLCNRAFCYSKLELHKHVIRDCDRALQLD 75

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSV 159
           PT LQAYILKG A S LGR+E AL VWE+GYEHALHQSADLKQ LELEEL+  AKQ ++ 
Sbjct: 76  PTRLQAYILKGSALSVLGRQENALLVWEQGYEHALHQSADLKQLLELEELIETAKQGKNT 135

Query: 160 TCEYD-------VSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            CE +         +   S   S   L   D +   +E      +C  ++   D SETC 
Sbjct: 136 LCESENHRPPPQTKSDSLSNGSSSETLKIQDTLGTPAE------LCGDATG--DKSETCL 187

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
            S+ + DL +   DE +       +KS   +NG                           
Sbjct: 188 NSADNSDLKHESHDEDRDS-----NKSDGQVNG--------------------------- 215

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSS 332
               S D  DI                           LS +S S NDS+  SES  K S
Sbjct: 216 ----SPDVLDI---------------------------LSYNSESCNDSSDASESSEKVS 244

Query: 333 ISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV 392
            +   SS+  E       K+    E   EA++NKKFC+ +IS + SISVDFRLSRGIA+V
Sbjct: 245 TNSGDSSNIPEIFRNPISKFIFSDERKGEARKNKKFCIAQISNTNSISVDFRLSRGIAEV 304

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
           NEGKYA AISIFDQILK+DP YPEALIGRGTA AFQREL+AAI+DFT+AIQ NP AGEAW
Sbjct: 305 NEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLAGEAW 364

Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512
           KRRGQARAALGE VEAI+DL+KALEFEP++ADILHERGIVNFKFK+F+AAVEDLSACVKL
Sbjct: 365 KRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSACVKL 424

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           DK+N SAYTYLGLALSSIGEYKKAEEAHLK++QLD+NFLEAW HLTQFYQDLA   KA E
Sbjct: 425 DKDNTSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPTKAQE 484

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           C+ ++L ID RF++A HLRGLL H +G+H+KAIKDL+ G
Sbjct: 485 CINKMLQIDGRFARANHLRGLLFHAMGEHRKAIKDLTMG 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496945|ref|XP_003517325.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  577 bits (1486), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 336/587 (57%), Positives = 404/587 (68%), Gaps = 81/587 (13%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA   + R  LA+LCS ++WSKAIR+LDSL++QS  IQDICNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPTTSQRATLARLCSSKDWSKAIRVLDSLVSQSGAIQDICNRAFCYSRLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           +KALQLDP+ LQAYILKG A SALGRK +AL VWE+GYEHA HQSADLK  LELEELLT 
Sbjct: 61  NKALQLDPSRLQAYILKGHALSALGRKTDALLVWEQGYEHAQHQSADLKLLLELEELLTT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK----SDICDSSSQSRDVS 208
            KQ  S   E     + S ++ SES   ++  ++E  EN ++     ++CD++S   D S
Sbjct: 121 TKQGNSALYE----TNGSPVSQSESDSPSDGNLTEICENQDRLSVQDELCDNAS---DKS 173

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHING------KLREVSENHNGSSDGSK 262
               KS+ + DL N  + E +       +KS   +NG      KL   SE+ N SSD S+
Sbjct: 174 LILLKSADNFDLRNELNIEDRES-----NKSDSQVNGSPDVIDKLSYNSESCNDSSDTSE 228

Query: 263 STHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSN 322
           S    +  +     SSD  D+                      ++  KLS          
Sbjct: 229 SCDKDKVFTNSGESSSDSLDVA---------------------EILRKLS---------- 257

Query: 323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD 382
                                  SK +F      E   EA++N KFCV RISK+KSISVD
Sbjct: 258 -----------------------SKFNFP----HEKIGEARKN-KFCVARISKTKSISVD 289

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
           FRLSRGI +VNEGKYA AISIFDQILKEDP YPEALIGRGTA AF+REL+AAI+DF++AI
Sbjct: 290 FRLSRGIGEVNEGKYAHAISIFDQILKEDPAYPEALIGRGTAYAFKRELDAAIADFSKAI 349

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + NPSAGEAWKRRGQARAALGE VEAI+DL+ ALEFE NSADILHERGIVNFKFK+F+AA
Sbjct: 350 EFNPSAGEAWKRRGQARAALGEFVEAIEDLTMALEFESNSADILHERGIVNFKFKEFDAA 409

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           VEDLSACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++Q+DRNFLEAW HLTQFYQ
Sbjct: 410 VEDLSACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQIDRNFLEAWAHLTQFYQ 469

Query: 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
           DL+   KA ECL Q+L ID RF++AYHLRGLL H +G+H+KAI DL+
Sbjct: 470 DLSKPTKAQECLNQMLQIDGRFARAYHLRGLLFHAMGEHRKAISDLT 516

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
TAIR|locus:2126347	1052	SRFR1 "SUPPRESSOR OF RPS4-RLD	0.341	0.240	0.703	1.2e-136
DICTYBASE|DDB_G0272186	1050	DDB_G0272186 "TPR_1 repeat-con	0.300	0.212	0.290	2.6e-28
ZFIN|ZDB-GENE-080722-25	826	ttc13 "tetratricopeptide repea	0.265	0.238	0.315	7.4e-19
UNIPROTKB|Q74DZ8	266	GSU1166 "TPR domain protein" [	0.300	0.838	0.271	1.2e-14
TIGR_CMR|GSU_1166	266	GSU_1166 "TPR domain protein"	0.300	0.838	0.271	1.2e-14
UNIPROTKB|P72802	266	mom72 "Mitochondrial outer mem	0.257	0.718	0.251	6.5e-12
ZFIN|ZDB-GENE-041121-17	542	stip1 "stress-induced-phosphop	0.242	0.332	0.247	8.6e-11
UNIPROTKB|Q08E34	609	TOMM70A "Translocase of outer	0.326	0.397	0.224	3.8e-10
UNIPROTKB|O94826	608	TOMM70A "Mitochondrial import	0.326	0.398	0.220	8e-10
UNIPROTKB|Q3ZBZ8	543	STIP1 "Stress-induced-phosphop	0.242	0.331	0.237	1.1e-09

TAIR|locus:2126347 SRFR1 "SUPPRESSOR OF RPS4-RLD 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
 Identities = 178/253 (70%), Positives = 212/253 (83%)

Query:   359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL 418
             S+E+++NKK+ + RIS + SISVDFRLSRGIAQVNEG Y  AISIFD++LKE+P YPEAL
Sbjct:   275 SDESRKNKKYTIARISGTHSISVDFRLSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEAL 334

Query:   419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478
             IGRGTA AFQRELE+AI+DFT+AIQSNP+A EAWKRRGQARAALGE VEA++DL+KAL F
Sbjct:   335 IGRGTAYAFQRELESAIADFTKAIQSNPAASEAWKRRGQARAALGEYVEAVEDLTKALVF 394

Query:   479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             EPNS D+LHERGIVNFK KDF AAV+DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEE
Sbjct:   395 EPNSPDVLHERGIVNFKSKDFTAAVKDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEE 454

Query:   539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXX 598
             AHLK+IQLD N+LEAW HL QFYQ+LA+  KALEC++QVL +D R  KAY          
Sbjct:   455 AHLKSIQLDSNYLEAWLHLAQFYQELADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGL 514

Query:   599 XXXKKAIKDLSSG 611
                +KAI++LS G
Sbjct:   515 GEHRKAIQELSIG 527

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0032947 "protein complex scaffold" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

DICTYBASE|DDB_G0272186 DDB_G0272186 "TPR_1 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 306 (112.8 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
 Identities = 65/224 (29%), Positives = 125/224 (55%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             +S+G   VN G+Y  AI +F  I+  +P+ P   +GRGT+ AF  +L  AI+DF+ AI+ 
Sbjct:   291 ISQGNTFVNAGQYEEAIELFTMIIDNNPLVPSLYLGRGTSNAFLGQLNEAINDFSRAIEL 350

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAV 503
             + ++ +A+KRRGQ++ A     EA++D ++A+ F+  +  DI + RG+++++ +++  A+
Sbjct:   351 DNTSSDAYKRRGQSKVAKSMEQEALEDFNQAVAFDKEDDYDIYYNRGLLHYQMRNYERAL 410

Query:   504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             +D      ++  +K A+  +GL L+  G   +A +A  +A+++D  F  +  ++ Q ++D
Sbjct:   411 KDFKKVTSIEPSHKLAWNRIGLCLNVNGYPMEAYQAFTEALRIDPYFEASHTNIGQCWKD 470

Query:   564 LANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKD 607
             L   + + +   + L I   +S A                AIKD
Sbjct:   471 LGKFDPSYQSFTKALEICPNYSNALHLRGLLFFNSGRHLDAIKD 514

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-080722-25 ttc13 "tetratricopeptide repeat domain 13" [Danio rerio (taxid:7955)]

 Score = 261 (96.9 bits), Expect = 7.4e-19, P = 7.4e-19
 Identities = 64/203 (31%), Positives = 109/203 (53%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA---RAFQ--RELEAAISDFT 439
             L+ G   +  G Y  AI  F  +L+ DP    A+ GRG A   ++ Q  +  + A+ + +
Sbjct:   113 LAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKSLQDIKNADLALYELS 172

Query:   440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
               I   P+  E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+
Sbjct:   173 RVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDY 231

Query:   500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
              AA+ED    ++L K    A  Y GL     G  K+A E   +A++L  +F++A+  L Q
Sbjct:   232 MAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQ 291

Query:   560 FYQDLANSEKALECLQQVLYIDK 582
              Y++L + E A+E  Q+ L +D+
Sbjct:   292 AYRELGDIENAMESFQKALLLDQ 314

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1166 GSU_1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P72802 mom72 "Mitochondrial outer membrane 72K protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 183 (69.5 bits), Expect = 6.5e-12, P = 6.5e-12
 Identities = 48/191 (25%), Positives = 85/191 (44%)

Query:   422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
             G  +   +    AI+DFTE+I+ N    +A+  RG A+  LG+   AI D ++A+   P 
Sbjct:    49 GVDKLAAQNFSGAIADFTESIKLNDQDADAYYNRGYAKHVLGQYQAAITDYNQAISLNPE 108

Query:   482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
              A  L  R    F    ++ A++D S  ++++      Y Y G + S +G    A   + 
Sbjct:   109 FAYALGNRCYAYFLLSQYDKAIQDCSNAIEINPNYADFYVYRGNSQSQLGNETTAIADYN 168

Query:   542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXX 601
              AI+++     A+ +    +  L   ++AL    Q + +D   ++AY             
Sbjct:   169 DAIRINAQHANAYYNRALTHNRLKQDQQALADYNQSIQLDPDSAEAYFNRGLTQYRLGDE 228

Query:   602 KKAIKDLSSGS 612
              KAI DL+  +
Sbjct:   229 PKAIADLTKAA 239

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

ZFIN|ZDB-GENE-041121-17 stip1 "stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
 Identities = 48/194 (24%), Positives = 85/194 (43%)

Query:   366 KKFCVTRISKSKSISVDFR-LSRGIAQVNEG-----KYASAISIFDQILKEDPMYPEALI 419
             ++ C   I   +    D+R +++  A++        KY  A+  F++ L E    P+ L 
Sbjct:   278 RELCEKAIDVGRENREDYRQIAKAYARIGNSYFKQEKYKEAVQFFNKSLTEHRT-PDVL- 335

Query:   420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  +  Q E E  + +  +    NP      K +G      G+   A++  S+A++  
Sbjct:   336 -----KKCQ-EAEKILKEQEKVAYINPDLALEEKNKGNDAFQKGDYPLAMKHYSEAIKRN 389

Query:   480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             P  A +   R     K  +F  A++D   C+ LD      YT  G AL ++ ++ KA + 
Sbjct:   390 PYDAKLFSNRAACYTKLLEFQLALKDCEECINLDSTFIKGYTRKGAALEAMKDFSKAMDV 449

Query:   540 HLKAIQLDRNFLEA 553
             + KA++LD N  EA
Sbjct:   450 YQKALELDSNSKEA 463

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q08E34 TOMM70A "Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
 Identities = 59/263 (22%), Positives = 104/263 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   314 IISECSKEIDAQGKY----MAEALLLRATFYLLIGNANAAKPDLDKVISLQEANVK---L 366

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RG+    Q++   +  DF  A   +P   + +  RGQ +  L +  EA+ D  
Sbjct:   367 RANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEAVADFD 426

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             + +   P SA         L+ +           AA++     +K        Y     A
Sbjct:   427 ECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYALYAQA 486

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   487 LTDQQQFGKADEMYDKCINLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 543

Query:   583 RFSKAYXXXXXXXXXXXXXKKAI 605
             +   AY             +KAI
Sbjct:   544 KCDFAYETMGTIEVQRGNMEKAI 566

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|O94826 TOMM70A "Mitochondrial import receptor subunit TOM70" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
 Identities = 58/263 (22%), Positives = 104/263 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   313 IISECSKEIDAEGKY----MAEALLLRATFYLLIGNANAAKPDLDKVISLKEANVK---L 365

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RG+    Q++   +  DF  A   +P   + +  RGQ +  L +  EA+ D  
Sbjct:   366 RANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEAVADFD 425

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             + +   P SA         L+ +           AA++     +K        Y     A
Sbjct:   426 ECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYALYAQA 485

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   ++ LE + + + ID 
Sbjct:   486 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DRGLELISKAIEIDN 542

Query:   583 RFSKAYXXXXXXXXXXXXXKKAI 605
             +   AY             +KAI
Sbjct:   543 KCDFAYETMGTIEVQRGNMEKAI 565

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=TAS

GO:0008320 "protein transmembrane transporter activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q3ZBZ8 STIP1 "Stress-induced-phosphoprotein 1" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 46/194 (23%), Positives = 85/194 (43%)

Query:   366 KKFCVTRISKSKSISVDFR-LSRGIAQVN-----EGKYASAISIFDQILKEDPMYPEALI 419
             ++ C   I   +    D+R +++  A++      E KY  AI  +++ L E    P+ L 
Sbjct:   279 RELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVL- 336

Query:   420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  +  Q + E  + +       NP      K +G      G+  +A++  ++A++  
Sbjct:   337 -----KKCQ-QAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 390

Query:   480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             P  A +   R     K  +F  A++D   C++L+      YT    AL ++ +Y KA + 
Sbjct:   391 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 450

Query:   540 HLKAIQLDRNFLEA 553
             + KA+ LD N  EA
Sbjct:   451 YQKALDLDSNCKEA 464

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	741
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-15
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	5e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-07
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	4e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	4e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	7e-06
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	8e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	2e-05
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	6e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	3e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	6e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	8e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	8e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.002
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.002
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.004
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 37/100 (37%), Positives = 57/100 (57%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EA    G     LG+  EA++   KALE +P++AD  +      +K   +  A+ED    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LD +N  AY  LGLA   +G+Y++A EA+ KA++LD N
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A   LG     +G+Y +A E + KA++LD +  +A+ +L   Y  L   E+ALE  ++ L
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            +D   +KAY+  GL  + LG++++A++  
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 31/99 (31%), Positives = 55/99 (55%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
           + L   G + +K  D++ A+E     ++LD +N  AY  L  A   +G+Y++A E + KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           ++LD +  +A+ +L   Y  L   E+ALE  ++ L +D 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 70.9 bits (174), Expect = 6e-15
 Identities = 28/97 (28%), Positives = 48/97 (49%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+ G      G Y  A+  +++ L+ DP   +A      A     + E A+ D+ +A++ 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +P   +A+   G A   LG+  EA++   KALE +PN
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 73.3 bits (178), Expect = 4e-14
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 7/209 (3%)

Query: 382 DFRLSRGIAQVNEGKYASAISIFDQILK--EDPMYPEALIGRGTARAFQRELEAAISDFT 439
              L   +A +  G+   A+ + ++ L+    P   EAL+  G       + E A+    
Sbjct: 60  GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119

Query: 440 EAIQSNPSAGEAWKRRG-QARAALGESVEAIQDLSKALEFEP---NSADILHERGIVNFK 495
           +A+  +P    A       A   LG+  EA++   KALE +P     A+ L   G +   
Sbjct: 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA 179

Query: 496 FKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              +  A+E L   +KL+ ++   A   LGL    +G+Y++A E + KA++LD +  EA 
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKR 583
            +L     +L   E+ALE L++ L +D  
Sbjct: 240 YNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 75.1 bits (185), Expect = 6e-14
 Identities = 52/229 (22%), Positives = 95/229 (41%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           S+  +L      + E ++  A ++ D++L  DP   +AL+ +G        +E A++ + 
Sbjct: 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +AI   P+               GE  EA +     L+  PNS    + + +V+F+ K++
Sbjct: 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A E L   +K   E   A    G +   +G  ++A +   + ++   N  +A   L  
Sbjct: 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
               L   ++A+  L   L +D     A  L G     LG  +KA + L
Sbjct: 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           EAL+  G       + + A+  + +A++ +P   +A+     A   LG+  EA++D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           LE +P++A   +  G+  +K   +  A+E     ++LD  
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 73.6 bits (181), Expect = 2e-13
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 4/225 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+A +  G+   A   ++Q L  DP    A +G       +   + A +   E + ++P
Sbjct: 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +A   +G    +LG    A+    KA+   PN+  +L     +  +  +F  A +  
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
            A +K    +  A+    L       Y+ A E    A++    +L A      +++   L
Sbjct: 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ--L 308

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
            N E+A + L Q+L       +A  L   +   LG+  +AI  LS
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLS 353

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 66.3 bits (162), Expect = 4e-11
 Identities = 58/218 (26%), Positives = 88/218 (40%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           + +    +  Y  A       LK  P Y  AL+  G +      LE A     + ++  P
Sbjct: 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ +A +     +  LG   EAI  LS AL  +P+    L   G       DF  A E L
Sbjct: 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +   +LD EN +A T LG++  S G+  +A      A QLD     A   L   Y     
Sbjct: 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
            +KAL   +++       +  ++L G +  G G   KA
Sbjct: 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 66.3 bits (162), Expect = 4e-11
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 24/217 (11%)

Query: 404 FDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           F Q+L E        D    E L  RG A     +LE A   + +A+  +P +  A  + 
Sbjct: 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KL 163

Query: 456 GQARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           G A+ AL      EA   + + L  +P + D L  +G +     +   A+      + L 
Sbjct: 164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR 223

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANS 567
             N +    L   L   GE+++A E H  A+          ++L+A   L  F +   N 
Sbjct: 224 PNNIAVLLALATILIEAGEFEEA-EKHADALLKKAPNSPLAHYLKA---LVDFQKK--NY 277

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           E A E LQ  L     +  A  L G   + LG  ++A
Sbjct: 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 65.5 bits (160), Expect = 7e-11
 Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 11/207 (5%)

Query: 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           Q+  G+   AI+     L  DP  P AL   G A     + E A     +A + +P    
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---ILHERGIVNFKFKDFNAAVEDLS 507
           A  + G ++ + G+  EAI DL  A + +P       +L    + + +F    AA + L 
Sbjct: 399 ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL- 457

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
              K   +N S +  LG      G+  KA EA  KA+ ++ +F  A  +L +      N 
Sbjct: 458 --EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLL 594
           + A++  ++VL ID +     +LR +L
Sbjct: 516 DDAIQRFEKVLTIDPK-----NLRAIL 537

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 9/241 (3%)

Query: 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
           +S     S +  +    + + + KY +AI      L++DP   EA    G       +  
Sbjct: 14  LSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYA 73

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEF--EPNSADILHER 489
           AA  +  +A+       +       ARA L +   + + D         +  +A++L  R
Sbjct: 74  AAEKELRKALSLGYPKNQV--LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALR 131

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLD 547
           G+          A +       L  + +S Y  LGLA    +   + +A     + +  D
Sbjct: 132 GLAYLGLGQLELAQKSYEQA--LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
              ++A          L N E AL   ++ + +             +L   G+ ++A K 
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249

Query: 608 L 608
            
Sbjct: 250 A 250

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEA 539
           ++A+ L   G   FK  D++ A+E     ++LD +N  AY  L LA   +G+ Y++A E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 540 HLKAIQLD 547
             KA++LD
Sbjct: 61  LEKALELD 68

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 59.2 bits (143), Expect = 5e-09
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           Y  A   F++ L    +  +  I    RGT +  + +   A++D +++I+ +P   +++ 
Sbjct: 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           +R      LG+  +A +D  KAL+      DI + R  ++F   +F  A +D    + LD
Sbjct: 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
            +   ++  LG+     G    +     +     +NF EA
Sbjct: 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCK---KNFPEA 466

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 58.9 bits (143), Expect = 6e-09
 Identities = 48/234 (20%), Positives = 86/234 (36%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           VD  L +G   ++ G    A++ + + +   P     L+   T      E E A      
Sbjct: 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
            ++  P++  A   +           +A + L  AL+  P     L   G   ++  +  
Sbjct: 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A + L+  +K    +  A   L      +G   +A      A+ LD +   A   L + 
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614
           Y  L + EKA E L +   +D   + A    G+     G   +AI DL + ++ 
Sbjct: 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDFNAAVEDLSA 508
           EA K  G A   LG+  EAI+   KALE +P++A+  +   +   K  KD+  A+EDL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 509 CVKLDK 514
            ++LD 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLS 473
            EAL   G A     + + AI  + +A++ +P   EA+     A   LG+   EA++DL 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 474 KALEFEP 480
           KALE +P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 55.5 bits (134), Expect = 9e-08
 Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 42/257 (16%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G A +  G +  A     +  + DP    A    G ++  Q +   AI+D   A Q +P 
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429

Query: 448 AGEA-------WKRRGQARAAL---------------------------GESVEAIQDLS 473
            G A       + R GQ   AL                           G+  +A +   
Sbjct: 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KAL  EP+          ++ +  + + A++     + +D +N  A     LAL+ +   
Sbjct: 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI----LALAGLYLR 545

Query: 534 KKAEEAHL----KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
              EE  +    KA +L+   +E    L Q+Y      +KAL  L +         +A+ 
Sbjct: 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605

Query: 590 LRGLLLHGLGQHKKAIK 606
           + G      G   KA+ 
Sbjct: 606 MLGRAQLAAGDLNKAVS 622

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 4/222 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G   + +G  A A   F++ L  +P +  A          +   + AI  F + +  +P
Sbjct: 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF--KFKDFNAAVE 504
               A           G   EA+  L KA   E N  +I     +  +         A+ 
Sbjct: 531 KNLRAILALAGLYLRTGNEEEAVAWLEKA--AELNPQEIEPALALAQYYLGKGQLKKALA 588

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            L+       ++  A+  LG A  + G+  KA  +  K + L  +   A   L   Y  +
Sbjct: 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
            N  KA+  L++ L +    ++A      LL    + + A K
Sbjct: 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            N A  Y +L  ++  + D +KAL+LDP   +AY   G A+  LG+ EEAL  +EK  E 
Sbjct: 38  YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 53.5 bits (128), Expect = 3e-07
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 13/211 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG  +  +GK+  A++   + ++ DP   ++ I R +      + + A  DF +A++ N 
Sbjct: 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +  R Q     GE  +A +D  K+++ +P+      + G+  +K     +++   
Sbjct: 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGH--- 556
             C K   E    Y Y G  L    ++ +A E    AI+L++       N L        
Sbjct: 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           L Q+ QD   +E   E   + L ID     A
Sbjct: 517 LFQWKQDFIEAENLCE---KALIIDPECDIA 544

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 369 CVT--RISKSKSISV--DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA 424
           CVT    S+    +     RL   +  + +G YA A    ++ L+ DP Y  A + R   
Sbjct: 19  CVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY 78

Query: 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNS 482
                E + A   + +A+   P+ G+     G    A G   EA+Q   +AL        
Sbjct: 79  YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
           +D L   G+   K   F+ A E L   ++LD +       L LA         A 
Sbjct: 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAP 191

Length = 250

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTE 440
           +   + G A    G Y  AI  +++ L+ DP   EA      A     +  E A+ D  +
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 441 AIQSNP 446
           A++ +P
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 42/184 (22%), Positives = 73/184 (39%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           EG    AI  F+++L  DP    A++            E A++   +A + NP   E   
Sbjct: 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q     G+  +A+  L++A +  P+S +     G       D N AV      + L 
Sbjct: 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            ++  A   L  A + +  Y KA  +  +A++L  +  EA   L Q       +E A + 
Sbjct: 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691

Query: 574 LQQV 577
            + +
Sbjct: 692 AKSL 695

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 35/148 (23%), Positives = 56/148 (37%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A    G   S++++  +     P   E L  +G  +        A+S   +A +  P+  
Sbjct: 75  ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A   LG   EA +   +ALE  PN   I +  G+      D   A   L   
Sbjct: 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAE 537
                 +      L L +   G++++AE
Sbjct: 195 YLSPAADSRVRQNLALVVGLQGDFREAE 222

Length = 257

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           + D   +   A    GKY  A+  +++ L+ DP   +A    G A     + E A+  + 
Sbjct: 33  NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92

Query: 440 EAIQSNPS 447
           +A++ +P+
Sbjct: 93  KALELDPN 100

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480
              A     + + A++    A+   P A EA    G+A    G   EA   L  AL  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 481 NSA 483
           +  
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 12/173 (6%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           Q +LE A  +  +A++ +P    A+         LGE  +A     +AL   PN+ D+L+
Sbjct: 44  QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
             G    +   +  A++     ++     +   +    GL     G++ KAE+   +A+Q
Sbjct: 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQV----------LYIDKRFSKAY 588
           +D    E+   L + Y      + A   L++           L++  R ++A 
Sbjct: 164 IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+   A +  G Y  A++  +  L   P+  EAL+  G A   Q  L  A +    A+ +
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 445 NPSA 448
           +P  
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL--- 486
           E+EA I+     +Q NP   E W   G+A  ALG + +A+     AL    ++ +IL   
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL 196

Query: 487 ------HERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
                      +  K +     A       + LD  N  A + L  A    G+Y +A
Sbjct: 197 AEALYYQAGQQMTAKARALLRQA-------LALDPANIRALSLLAFAAFEQGDYAEA 246

Length = 287

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALEC 573
           +N  A   LG AL  +G+Y +A EA+ KA++LD +  EA+ +L   Y  L  + E+ALE 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 574 LQQVLYIDK 582
           L++ L +D 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           EA  +L   Y  L + ++ALE  ++ L +D   + AY+      + LG++++A++D    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 612 SRTMMPHLIWNLTRWRNLCFN 632
              + P             + 
Sbjct: 61  LE-LDPDNAKAYYNLGLAYYK 80

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
           A+   ++A++ +PN+A++  +R   N K  +F  AV D +  ++LD     AY   G A 
Sbjct: 21  AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

Query: 528 SSIGEYKKAEEA 539
             + EY+ A+ A
Sbjct: 81  MKLEEYQTAKAA 92

Length = 356

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 394 EGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--- 447
            G YA AI  F   LK   +    P A    G A   Q +   A   F   ++  P    
Sbjct: 13  AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPK 72

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A +A  + G +   LG+  +A   L + ++  P S+
Sbjct: 73  APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 108

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 80/358 (22%), Positives = 130/358 (36%), Gaps = 74/358 (20%)

Query: 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD--NKSSDSTESRSK 347
           K  ++++  R+        +  + +  S    N   E   +    D  + ++ S E R K
Sbjct: 66  KPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKK 125

Query: 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI 407
            + K   LKE  N+A RNK F       +K+I +               Y+ AI      
Sbjct: 126 YAAK---LKEKGNKAYRNKDF-------NKAIKL---------------YSKAI-----E 155

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467
            K DP+Y         A     + E  + D T A++ +P   +A  RR  A   LG+  +
Sbjct: 156 CKPDPVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212

Query: 468 AIQDLSKAL---EFEPNSADILHERGIVNF-------KFKDFNAAV-------------- 503
           A+ DL+ +     F    +    ER +  F         +     +              
Sbjct: 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR 272

Query: 504 -----EDLSACVKLDKENKSAYTYLGLAL--SSIGE-YKKAEEAHLKAIQLDRNFL---E 552
                  L    +LD+E  +    LGL    S   E Y++A  A  K   LD   L   E
Sbjct: 273 PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK--ALDLGKLGEKE 330

Query: 553 AWGH-LTQFYQDLANS-EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           A    L   ++ L     +AL  L + + +D R +++Y  R  +   LG   KA +D 
Sbjct: 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +T+AI  +P+  E +  R QA   LG   EA+ D +KA+E +P+ A     +G 
Sbjct: 19  ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78

Query: 492 VNFKFKDFNAA 502
              K +++  A
Sbjct: 79  ACMKLEEYQTA 89

Length = 356

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 5/225 (2%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            L+     + +G+   A++I ++     P  PEA +  G A+    +L  A+S F + + 
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P +  A      A A +    +AI  L +ALE +P++ +       +    K   +A 
Sbjct: 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689

Query: 504 EDLSACVKLDKENKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           + ++  ++      +  +   G       +Y  A +A+ KA++   +   A   L +   
Sbjct: 690 K-IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALL 747

Query: 563 DLANSEKALECLQQVLYIDKRFSKA-YHLRGLLLHGLGQHKKAIK 606
              N+ +A++ L+  L      +     L  L L     + KAIK
Sbjct: 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ-KDYDKAIK 791

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKA 570
           +A   L L L  +G+Y +A E   KA++L R           A  +L + Y  L + ++A
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 571 LECLQQVL 578
           LE L++ L
Sbjct: 66  LEYLEKAL 73

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++L+ N 
Sbjct: 3   ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +A    G A   LG+  EA++   KALE  PN
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +A     ++ A ++   AA +     ++ NP      K         G++  ++  L K
Sbjct: 34  AKATGAPESSLAMRQTQGAAAALGAAVLR-NPEDLSIAKLATALYLR-GDADSSLAVLQK 91

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +    P   ++L  +G    +  +F  AV  L    +L   +  A+  LG AL  +G + 
Sbjct: 92  SAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151

Query: 535 KAEEAHLKAIQLDRN 549
           +A  A+ +A++L  N
Sbjct: 152 EARRAYRQALELAPN 166

Length = 257

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           RG    +LG    A  D S+AL   P+  ++ +  GI   +  +F+AA E   + ++LD 
Sbjct: 71  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALE 572
               A+   G+AL   G YK A++  L   Q D N  F   W +L +  Q L + ++A  
Sbjct: 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE--QKL-DPKQAKT 187

Query: 573 CLQQ 576
            L+Q
Sbjct: 188 NLKQ 191

Length = 297

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 42.9 bits (99), Expect = 4e-04
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAK-LCSLRNWSKAIRILDSLL--AQSY 67
           Y L    + +   ++ + +D  +     A + L   L +L  + +A+ +L+  L      
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           + + + N    Y +L  ++  +   +KAL+LDP   +A          LGR EEAL   E
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260

Query: 128 KGYE 131
           K  E
Sbjct: 261 KALE 264

Length = 291

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++LD N 
Sbjct: 3   ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
            + ++ S     +L R  A +  G  A A+   +  LK  P               Q++ 
Sbjct: 729 ALKRAPSSQNAIKLHR--ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786

Query: 432 EAAISDFTEAIQSNPSAGE-----AWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
           + AI  +   ++  P         AW               A++   +AL+  PN   IL
Sbjct: 787 DKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP------RALEYAERALKLAPNIPAIL 840

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
              G +  +  + + A+  L   V +  E  +   +L LAL + G   +A
Sbjct: 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 27/130 (20%), Positives = 46/130 (35%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
                  A  GR        + + A+      I + P      +  G       ++ EAI
Sbjct: 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI 360

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           + L KAL  +PNS  +         K      A+  L+  +  D E+ + +  L  A + 
Sbjct: 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420

Query: 530 IGEYKKAEEA 539
           +G   +A  A
Sbjct: 421 LGNRAEALLA 430

Length = 484

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.3 bits (100), Expect = 8e-04
 Identities = 22/100 (22%), Positives = 46/100 (46%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A  NE ++  A+ ++ ++L+ DP  P+ L+G     A   +   A+    E +   P+  
Sbjct: 95  AYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDA 154

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
             ++       A  + ++A+Q   +AL  EP++ +   E 
Sbjct: 155 ARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALEL 194

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           + + N    Y +L  +   +   +KAL+LDP    AY     A+  LG+ EEAL  +EK 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 130 YEHA 133
            E  
Sbjct: 61  LELD 64

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
           +A A+ ++ Q +  DP   E    R  A         A++D  +AI+ +PS  +A+ R+G
Sbjct: 18  FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

Query: 457 QARAALGESVEAIQDLSKALEFEPNS---ADILHE 488
            A   L E   A   L K     P       ++ E
Sbjct: 78  TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112

Length = 356

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 35/165 (21%), Positives = 59/165 (35%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            RA    L    +    A +S      A   R       G+  EA++ L   +  +P++ 
Sbjct: 281 IRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP 340

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
             L   G +  +      A+E L   + LD  +      L  AL   G+ ++A     + 
Sbjct: 341 YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRY 400

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
           +  D      W  L Q Y +L N  +AL    +   +  R  +A 
Sbjct: 401 LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445

Length = 484

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLS 609
           EA  +L      L + ++A+E  ++ L +D   ++AY+   L    LG  +++A++DL 
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK-EEALSVWEKGYE 131
           N      +L  +   I   +KAL+LDP   +AY     A+  LG+  EEAL   EK  E
Sbjct: 8   NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALE 66

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	741
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.98
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG1126	638	consensus DNA-binding cell division cycle control	99.96
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.95
KOG2003	840	consensus TPR repeat-containing protein [General f	99.95
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK14574	822	hmsH outer membrane protein; Provisional	99.93
PRK14574	822	hmsH outer membrane protein; Provisional	99.93
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.93
KOG2076	895	consensus RNA polymerase III transcription factor	99.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.92
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.91
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.9
KOG2076	895	consensus RNA polymerase III transcription factor	99.89
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.89
PLN03077	857	Protein ECB2; Provisional	99.89
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.89
KOG1129	478	consensus TPR repeat-containing protein [General f	99.89
PLN03218	1060	maturation of RBCL 1; Provisional	99.88
PLN03218	1060	maturation of RBCL 1; Provisional	99.88
PLN03077	857	Protein ECB2; Provisional	99.88
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.88
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.87
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.87
PRK12370	553	invasion protein regulator; Provisional	99.87
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.86
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.86
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.85
PRK11189	296	lipoprotein NlpI; Provisional	99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.85
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.84
PRK12370	553	invasion protein regulator; Provisional	99.84
KOG1125	579	consensus TPR repeat-containing protein [General f	99.84
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.84
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.83
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.83
PRK11189	296	lipoprotein NlpI; Provisional	99.82
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.82
KOG1129	478	consensus TPR repeat-containing protein [General f	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.8
KOG1125	579	consensus TPR repeat-containing protein [General f	99.8
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.79
PLN02789	320	farnesyltranstransferase	99.78
KOG0553	304	consensus TPR repeat-containing protein [General f	99.78
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.78
PLN02789	320	farnesyltranstransferase	99.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.77
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.75
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.72
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.7
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.67
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.63
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.62
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.61
PRK15359	144	type III secretion system chaperone protein SscB;	99.57
PRK15359	144	type III secretion system chaperone protein SscB;	99.57
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.53
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.52
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.52
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.52
KOG4234	271	consensus TPR repeat-containing protein [General f	99.51
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.51
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.51
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.51
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.47
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.47
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.45
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.43
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.42
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.42
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.39
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.39
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.37
PRK04841	903	transcriptional regulator MalT; Provisional	99.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.37
PRK04841	903	transcriptional regulator MalT; Provisional	99.36
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.33
KOG0553	304	consensus TPR repeat-containing protein [General f	99.32
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.31
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.16
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.15
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.11
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.11
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.1
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.09
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.06
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.05
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.01
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.01
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.0
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.97
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.96
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.96
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.95
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.95
PRK11906	458	transcriptional regulator; Provisional	98.94
PRK15331	165	chaperone protein SicA; Provisional	98.93
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.93
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.92
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.92
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.91
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.9
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.9
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.89
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.89
PRK11906	458	transcriptional regulator; Provisional	98.89
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.89
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.88
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.88
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.87
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.87
PRK15331	165	chaperone protein SicA; Provisional	98.84
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.82
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.81
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.79
PRK10803	263	tol-pal system protein YbgF; Provisional	98.78
KOG4555	175	consensus TPR repeat-containing protein [Function	98.78
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.77
PRK10803	263	tol-pal system protein YbgF; Provisional	98.76
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.69
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.69
KOG2471	696	consensus TPR repeat-containing protein [General f	98.69
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.69
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.68
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.67
PF12688	120	TPR_5: Tetratrico peptide repeat	98.67
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.65
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.63
PF12688	120	TPR_5: Tetratrico peptide repeat	98.62
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.62
PF13512	142	TPR_18: Tetratricopeptide repeat	98.61
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.59
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.59
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.54
PF13512	142	TPR_18: Tetratricopeptide repeat	98.52
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.52
KOG4234	271	consensus TPR repeat-containing protein [General f	98.51
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.46
PF13371	73	TPR_9: Tetratricopeptide repeat	98.45
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.36
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.34
KOG2471	696	consensus TPR repeat-containing protein [General f	98.29
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.24
KOG1585	308	consensus Protein required for fusion of vesicles	98.23
KOG4555	175	consensus TPR repeat-containing protein [Function	98.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.19
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.18
KOG1586	288	consensus Protein required for fusion of vesicles	98.14
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.14
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.14
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.07
PF13431	34	TPR_17: Tetratricopeptide repeat	98.0
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.0
PF13428	44	TPR_14: Tetratricopeptide repeat	97.96
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.95
KOG1586	288	consensus Protein required for fusion of vesicles	97.95
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.93
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.91
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.91
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.88
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.87
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.86
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.85
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.82
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.78
KOG1585	308	consensus Protein required for fusion of vesicles	97.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.74
PF13428	44	TPR_14: Tetratricopeptide repeat	97.73
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.7
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.68
KOG1310	758	consensus WD40 repeat protein [General function pr	97.66
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.65
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.63
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.6
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.58
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.55
PF13431	34	TPR_17: Tetratricopeptide repeat	97.54
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.54
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.52
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.44
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.42
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.41
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.41
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.39
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.35
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.34
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.34
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.32
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.29
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.17
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.16
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.15
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.12
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.11
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.1
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.04
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.0
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.0
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.97
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.89
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.89
KOG1258	577	consensus mRNA processing protein [RNA processing	96.88
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.83
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.8
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.8
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.79
KOG1258	577	consensus mRNA processing protein [RNA processing	96.74
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.7
PRK10941	269	hypothetical protein; Provisional	96.67
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.66
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.64
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.43
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.38
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.35
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.32
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.31
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.26
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.22
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.19
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.18
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.18
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.03
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.89
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.85
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.82
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.8
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.67
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.62
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.59
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.55
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.54
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.53
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.51
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.47
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.4
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.37
PRK10941	269	hypothetical protein; Provisional	95.35
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.24
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.2
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.2
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.16
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.0
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.95
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.91
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.89
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.5
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.47
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.43
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.35
KOG3364	149	consensus Membrane protein involved in organellar	94.18
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.16
KOG3364	149	consensus Membrane protein involved in organellar	94.12
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.11
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.08
KOG1310	758	consensus WD40 repeat protein [General function pr	93.91
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.6
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.55
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.54
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.45
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.3
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.19
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.91
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.87
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.81
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.85
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.66
KOG2422	665	consensus Uncharacterized conserved protein [Funct	91.64
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.36
KOG1463	411	consensus 26S proteasome regulatory complex, subun	91.27
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.26
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.93
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.76
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.73
COG2912	269	Uncharacterized conserved protein [Function unknow	90.71
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.7
KOG0529	421	consensus Protein geranylgeranyltransferase type I	90.68
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.59
KOG2581	493	consensus 26S proteasome regulatory complex, subun	90.24
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.24
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.97
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.76
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	89.63
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.18
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	88.47
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.37
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.33
COG2912	269	Uncharacterized conserved protein [Function unknow	88.27
KOG2581	493	consensus 26S proteasome regulatory complex, subun	88.05
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.94
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.83
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	87.38
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	86.83
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	86.14
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	86.12
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.99
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.68
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.44
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.19
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.04
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.93
COG3947	361	Response regulator containing CheY-like receiver a	84.81
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.7
PRK11619	644	lytic murein transglycosylase; Provisional	83.97
COG4941	415	Predicted RNA polymerase sigma factor containing a	83.86
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.39
PRK11619	644	lytic murein transglycosylase; Provisional	83.22
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.96
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.44
KOG4014	248	consensus Uncharacterized conserved protein (conta	82.24
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	81.99
PF13041	50	PPR_2: PPR repeat family	81.79
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	80.12

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-45  Score=365.87  Aligned_cols=463  Identities=16%  Similarity=0.127  Sum_probs=301.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 004622           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (741)
Q Consensus        42 ~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  120 (741)
                      .+-+.|+.|||++|.+.....-..+ .+.....-++.++++..+++....--..+++.+|...++|-.+|.++...|+++
T Consensus        54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~  133 (966)
T KOG4626|consen   54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ  133 (966)
T ss_pred             HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence            3457899999999999999987777 555556778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCccccc
Q 004622          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS  200 (741)
Q Consensus       121 ~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  200 (741)
                      +|+..|+.+++++|++.+ +...+                                                        
T Consensus       134 ~al~~y~~aiel~p~fid-a~inl--------------------------------------------------------  156 (966)
T KOG4626|consen  134 DALALYRAAIELKPKFID-AYINL--------------------------------------------------------  156 (966)
T ss_pred             HHHHHHHHHHhcCchhhH-HHhhH--------------------------------------------------------
Confidence            999999999999998877 33322                                                        


Q ss_pred             CCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCc
Q 004622          201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD  280 (741)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (741)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (966)
T KOG4626|consen  157 --------------------------------------------------------------------------------  156 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHH
Q 004622          281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN  360 (741)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~  360 (741)
                                                     |..+..+|+.+.|...|..++.++|....+...++.++...|+..+|..
T Consensus       157 -------------------------------a~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  157 -------------------------------AAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             -------------------------------HHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence                                           3333444555556666666666666666666666666666666666655


Q ss_pred             HHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 004622          361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE  440 (741)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  440 (741)
                              ++.+.....|..+-+|..+|.++..+|+...|+..|+++++++|+.+++|+++|.+|...+.++.|+.+|.+
T Consensus       206 --------cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  206 --------CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             --------HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence                    555555555555556666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004622          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (741)
Q Consensus       441 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  520 (741)
                      ++.+.|++..++.++|.+|+.+|..+-|+..|++++++.|+.++++.++|..+-..|+..+|..+|.+++.+.|+.+.++
T Consensus       278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam  357 (966)
T KOG4626|consen  278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM  357 (966)
T ss_pred             HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCC
Q 004622          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (741)
Q Consensus       521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  600 (741)
                      +++|.++..+|.+++|...|.++++..|+...+..+||.+|.++|++++|+.+|++++.+.|...+++.++|..|..+|+
T Consensus       358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh---ccCCcccchhhHHH---HhcCCCchhHhhh
Q 004622          601 HKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL---KSTVSFAGLTLMEI---LIPSSRNIGAKDC  674 (741)
Q Consensus       601 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~---~~~~g~~~~A~~~  674 (741)
                      .+.|+..|.+++.++|.- .++ ..++|.+|...|+..+|+..|+..   ++..|.++.+++..   ...-.++++-...
T Consensus       438 v~~A~q~y~rAI~~nPt~-AeA-hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k  515 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPTF-AEA-HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK  515 (966)
T ss_pred             HHHHHHHHHHHHhcCcHH-HHH-HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence            666666666666666654 444 566666666666666666544442   33333444444422   2233334444444


Q ss_pred             HHHHHhhh
Q 004622          675 IPRMYVKR  682 (741)
Q Consensus       675 ~~~~~~~~  682 (741)
                      +..+.+++
T Consensus       516 l~sivrdq  523 (966)
T KOG4626|consen  516 LVSIVRDQ  523 (966)
T ss_pred             HHHHHHHH
Confidence            44444433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-45  Score=362.04  Aligned_cols=421  Identities=15%  Similarity=0.132  Sum_probs=395.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (741)
Q Consensus        43 ~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  121 (741)
                      .+=+|+..+++..+..-..+++++ .-...|.|+|.++-..|++.+|+..++.+++++|++.+||..+|.++...|+.+.
T Consensus        89 ~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~  168 (966)
T KOG4626|consen   89 SAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL  168 (966)
T ss_pred             hhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc
Confidence            344688899999999999999988 6788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccC
Q 004622          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (741)
Q Consensus       122 A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  201 (741)
                      |.+.|..+|.++|+..- +.                                                            
T Consensus       169 a~~~~~~alqlnP~l~c-a~------------------------------------------------------------  187 (966)
T KOG4626|consen  169 AVQCFFEALQLNPDLYC-AR------------------------------------------------------------  187 (966)
T ss_pred             cHHHHHHHHhcCcchhh-hh------------------------------------------------------------
Confidence            99999999999998755 00                                                            


Q ss_pred             CCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCcc
Q 004622          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (741)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (741)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (966)
T KOG4626|consen  188 --------------------------------------------------------------------------------  187 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHH
Q 004622          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (741)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~  361 (741)
                                                 ..+|+.+-..|+..+|...|.++++..|.-..+|.++|.++..+|+...++. 
T Consensus       188 ---------------------------s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq-  239 (966)
T KOG4626|consen  188 ---------------------------SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ-  239 (966)
T ss_pred             ---------------------------cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH-
Confidence                                       1245555567889999999999999999999999999999999999999999 


Q ss_pred             HHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (741)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  441 (741)
                             .+++....+|...++++++|.+|-..+.+++|+.+|.+++...|+++.++-++|.+|+.+|..+-|+..|+++
T Consensus       240 -------~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra  312 (966)
T KOG4626|consen  240 -------HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA  312 (966)
T ss_pred             -------HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence                   8888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (741)
Q Consensus       442 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  521 (741)
                      +++.|+.++++.++|..+...|+..+|..+|.+++.+.|+.+++.++||.+|..+|.+++|...|.++++..|....++.
T Consensus       313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n  392 (966)
T KOG4626|consen  313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN  392 (966)
T ss_pred             HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCCh
Q 004622          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (741)
Q Consensus       522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  601 (741)
                      ++|.+|.++|++++|+.+|+.++.+.|...+++.++|..|..+|+...|+..|.+++.++|...+++.++|.+|...|+.
T Consensus       393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni  472 (966)
T KOG4626|consen  393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI  472 (966)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHh---CCCHHHHH
Q 004622          602 KKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNA---WPFIRRRL  641 (741)
Q Consensus       602 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~---~g~~~~A~  641 (741)
                      .+|+..|+.++.+.|+. +.+ +.+++.++.-   ..++++-.
T Consensus       473 ~~AI~sY~~aLklkPDf-pdA-~cNllh~lq~vcdw~D~d~~~  513 (966)
T KOG4626|consen  473 PEAIQSYRTALKLKPDF-PDA-YCNLLHCLQIVCDWTDYDKRM  513 (966)
T ss_pred             HHHHHHHHHHHccCCCC-chh-hhHHHHHHHHHhcccchHHHH
Confidence            99999999999999987 666 7788777644   44444444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=8.6e-39  Score=379.44  Aligned_cols=629  Identities=13%  Similarity=0.066  Sum_probs=420.3

Q ss_pred             hhHHHHHhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhc
Q 004622            6 LLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLEL   84 (741)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~   84 (741)
                      +.....+.+...+++..+.+.+..++-.+........+  ++..|+|++|+..++++++.+ ++...+..+|.++...|+
T Consensus       131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  208 (899)
T TIGR02917       131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQL--ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN  208 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Confidence            44556667777777777777777665555444443333  678899999999999998887 667778888899999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-hh---hccc
Q 004622           85 HKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK-QD---RSVT  160 (741)
Q Consensus        85 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~-~~---~~~~  160 (741)
                      +++|+..+++++..+|+++.+++.+|.++...|++++|...++++++..|+++. .......+....... .+   ....
T Consensus       209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~  287 (899)
T TIGR02917       209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL-AHYLKALVDFQKKNYEDARETLQDA  287 (899)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999989999999999999999999999999988888766 333322222111000 00   0000


Q ss_pred             cccCcCCc--cchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccc
Q 004622          161 CEYDVSNS--MSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSK  238 (741)
Q Consensus       161 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (741)
                      ....+...  ...+.......+........+.                  ..+...+.++....                
T Consensus       288 l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~------------------~~~~~~p~~~~~~~----------------  333 (899)
T TIGR02917       288 LKSAPEYLPALLLAGASEYQLGNLEQAYQYLN------------------QILKYAPNSHQARR----------------  333 (899)
T ss_pred             HHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH------------------HHHHhCCCChHHHH----------------
Confidence            00000000  0000000000000000000000                  00000000000000                


Q ss_pred             cccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhc
Q 004622          239 SGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASL  318 (741)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~  318 (741)
                             .+..+....++.....                              ................+..+|..++..
T Consensus       334 -------~la~~~~~~g~~~~A~------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~  376 (899)
T TIGR02917       334 -------LLASIQLRLGRVDEAI------------------------------ATLSPALGLDPDDPAALSLLGEAYLAL  376 (899)
T ss_pred             -------HHHHHHHHCCCHHHHH------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence                   0000000000000000                              000000000011223344455555555


Q ss_pred             CChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHH--------------------------HHHH
Q 004622          319 NDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKF--------------------------CVTR  372 (741)
Q Consensus       319 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~  372 (741)
                      |++++|+..|++++..+|++...+..++.++...|++++|+..+......                          .+..
T Consensus       377 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  456 (899)
T TIGR02917       377 GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK  456 (899)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence            55555555555555555555555555555555555555444432222110                          3444


Q ss_pred             hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 004622          373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (741)
Q Consensus       373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~  452 (741)
                      .....|.++..+..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..+++++...|.+..++
T Consensus       457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  536 (899)
T TIGR02917       457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI  536 (899)
T ss_pred             HHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            45566777778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (741)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  532 (741)
                      ..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++..+..+|.++...|+
T Consensus       537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  616 (899)
T TIGR02917       537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD  616 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS  612 (741)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (741)
                      +++|+..|+++++..|.++.++..+|.++...|++++|+..|++++...|++..++..++.++...|++++|+..++.+.
T Consensus       617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhHHHHhcCCCchhHhhhHHHHHhhhhhccc---
Q 004622          613 RTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSL---  687 (741)
Q Consensus       613 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---  687 (741)
                      ...|.+ ... +..+|.++...|++++|+..++......|  .....++.++...|++.+|...++...........   
T Consensus       697 ~~~~~~-~~~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  774 (899)
T TIGR02917       697 KQHPKA-ALG-FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT  774 (899)
T ss_pred             hhCcCC-hHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            887776 444 77888888888999998877776544333  45667888888889999998888887765532221   


Q ss_pred             -----hhhhhhhhhccchhHHhhhhcch
Q 004622          688 -----PCVILSKRESSGDKTFLLQSRRL  710 (741)
Q Consensus       688 -----~~~~~~~~~a~~~~~~~l~~~~~  710 (741)
                           ....+++.++...+..++...|.
T Consensus       775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~  802 (899)
T TIGR02917       775 ALAELYLAQKDYDKAIKHYRTVVKKAPD  802 (899)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence                 12247778888888888887775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=4.3e-38  Score=373.45  Aligned_cols=561  Identities=14%  Similarity=0.043  Sum_probs=453.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      ..+..++..|+|++|+..|+++++.+ .+...+..+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++
T Consensus       130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  209 (899)
T TIGR02917       130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI  209 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH
Confidence            45556788999999999999999888 56777889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  199 (741)
                      ++|+..|++++..+|+++. ....+..+....           ++...+...+.......+.++.......         
T Consensus       210 ~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~---------  268 (899)
T TIGR02917       210 ELALAAYRKAIALRPNNPA-VLLALATILIEA-----------GEFEEAEKHADALLKKAPNSPLAHYLKA---------  268 (899)
T ss_pred             HHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCchHHHHHH---------
Confidence            9999999999999998877 433333332221           0111111111111111111110000000         


Q ss_pred             cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (741)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (741)
                                              .....     .+.....+..+.                                  
T Consensus       269 ------------------------~~~~~-----~~~~~~A~~~~~----------------------------------  285 (899)
T TIGR02917       269 ------------------------LVDFQ-----KKNYEDARETLQ----------------------------------  285 (899)
T ss_pred             ------------------------HHHHH-----hcCHHHHHHHHH----------------------------------
Confidence                                    00000     000000000000                                  


Q ss_pred             ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (741)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~  359 (741)
                                      ...+..+........+|..++..|++++|+..+.+++...|.+......++.++...|++++|.
T Consensus       286 ----------------~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  349 (899)
T TIGR02917       286 ----------------DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI  349 (899)
T ss_pred             ----------------HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence                            0000111223456678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (741)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  439 (741)
                      .        .+.......|.+...+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+.
T Consensus       350 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  421 (899)
T TIGR02917       350 A--------TLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE  421 (899)
T ss_pred             H--------HHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            9        66777778888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (741)
Q Consensus       440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  519 (741)
                      +++...|........++..+...|++++|+..+++.+...|.++.++..+|.++...|++++|+.+|+++++.+|.+..+
T Consensus       422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  501 (899)
T TIGR02917       422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA  501 (899)
T ss_pred             HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC
Q 004622          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (741)
Q Consensus       520 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  599 (741)
                      +..+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|
T Consensus       502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  581 (899)
T TIGR02917       502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG  581 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc---CCcccchhhHHHHhcCCCchhHhhhHH
Q 004622          600 QHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS---TVSFAGLTLMEILIPSSRNIGAKDCIP  676 (741)
Q Consensus       600 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~  676 (741)
                      ++++|+..+++++...|.+ ... +..+|.++...|++++|+.+++.+..   ..+..+..++.++...|++++|+..|+
T Consensus       582 ~~~~A~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  659 (899)
T TIGR02917       582 QLKKALAILNEAADAAPDS-PEA-WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK  659 (899)
T ss_pred             CHHHHHHHHHHHHHcCCCC-HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999998887 555 99999999999999999987776533   334578889999999999999999999


Q ss_pred             HHHhhhhhccc--------hhhhhhhhhccchhHHhhhhcchh
Q 004622          677 RMYVKRFTDSL--------PCVILSKRESSGDKTFLLQSRRLR  711 (741)
Q Consensus       677 ~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~l~~~~~~  711 (741)
                      ++.........        ....+.+.++...+..+....|..
T Consensus       660 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  702 (899)
T TIGR02917       660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA  702 (899)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence            88775422111        112245566666666666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=6.3e-38  Score=349.66  Aligned_cols=431  Identities=16%  Similarity=0.140  Sum_probs=257.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004622           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (741)
Q Consensus        36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  115 (741)
                      +...+..++.+|+.|+|++|+..|+++|.+.+++..+.++|.||.++|++++|+.+|+++++++|++.++++++|.+|..
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34455788999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCC
Q 004622          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (741)
Q Consensus       116 ~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  195 (741)
                      +|++++|+..|..++.+++.+.......+............                   ...+...|...         
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-------------------~~~l~~~~~~~---------  258 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKA-------------------KEILETKPENL---------  258 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH-------------------HHHHhcCCCCC---------
Confidence            99999999999998888776655222222111110000000                   00000000000         


Q ss_pred             cccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCccccccc
Q 004622          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR  275 (741)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (741)
                                                                                                      
T Consensus       259 --------------------------------------------------------------------------------  258 (615)
T TIGR00990       259 --------------------------------------------------------------------------------  258 (615)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcH
Q 004622          276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML  355 (741)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  355 (741)
                                                    .....+|. ++.......+...+....+.+|.....+..++..+..    
T Consensus       259 ------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e----  303 (615)
T TIGR00990       259 ------------------------------PSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPE----  303 (615)
T ss_pred             ------------------------------CCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHH----
Confidence                                          00000111 0000011111122223333333222222222211111    


Q ss_pred             HHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHH
Q 004622          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQRELE  432 (741)
Q Consensus       356 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~  432 (741)
                                                         ....++|++|+..|++++..   .|....++..+|.++...|+++
T Consensus       304 -----------------------------------~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~  348 (615)
T TIGR00990       304 -----------------------------------SKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL  348 (615)
T ss_pred             -----------------------------------hhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence                                               12235566666666666654   2444555666666666666666


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       433 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                      +|+..|+++++.+|....++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+|++++.+
T Consensus       349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH-----
Q 004622          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-----  587 (741)
Q Consensus       513 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----  587 (741)
                      +|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|.....     
T Consensus       429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~  508 (615)
T TIGR00990       429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL  508 (615)
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence            666666666666666666666666666666666666666666666666666666666666666666665543211     


Q ss_pred             -HHHHHHH-HHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622          588 -YHLRGLL-LHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRL  646 (741)
Q Consensus       588 -~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  646 (741)
                       +...+.. +...|++++|+..+++++.++|++ ... +..+|.++...|++++|+.+++.
T Consensus       509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-~~a-~~~la~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       509 PLINKALALFQWKQDFIEAENLCEKALIIDPEC-DIA-VATMAQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHH-HHHHHHHHHHccCHHHHHHHHHH
Confidence             1122222 223466666666666666666655 233 55566666666666666654444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-39  Score=321.60  Aligned_cols=467  Identities=19%  Similarity=0.211  Sum_probs=327.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004622           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (741)
Q Consensus        37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  115 (741)
                      ...+.+++.+|..|||+.||.+|+.||.++ +|+..|.||..||.++|+|++|+.+..++++++|+|+++|.++|.++..
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            345678999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCC
Q 004622          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (741)
Q Consensus       116 ~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  195 (741)
                      +|++++|+..|.++|+.+|+|.. ++.++..........            +.......+...+.++|.+..++.     
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~-L~~gl~~a~~~~~~~------------~~~~~~p~~~~~l~~~p~t~~~~~-----  144 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQ-LKTGLAQAYLEDYAA------------DQLFTKPYFHEKLANLPLTNYSLS-----  144 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHH-HHHhHHHhhhHHHHh------------hhhccCcHHHHHhhcChhhhhhhc-----
Confidence            99999999999999999999999 999998888222111            111222256778888888888887     


Q ss_pred             cccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCc---cccccccCcccccccccCCCCCCCCCCCCCCCcccc
Q 004622          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPV---SKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE  272 (741)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (741)
                                           +|.+...+..+..+|+.+..   +|+.+++.+.+.+++......+.....      .+.
T Consensus       145 ---------------------~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~------~~~  197 (539)
T KOG0548|consen  145 ---------------------DPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEIL------ASM  197 (539)
T ss_pred             ---------------------cHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccC------CCC
Confidence                                 88888888888888888776   788888888888877663222221111      111


Q ss_pred             cccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHch
Q 004622          273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW  352 (741)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  352 (741)
                      ..|.     .+...+++. .+.....+..+..+..++.+|+..++..+|..|++.|..+++++ .++..+.+.+.+|+..
T Consensus       198 ~~p~-----~~~~~~~~~-~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~  270 (539)
T KOG0548|consen  198 AEPC-----KQEHNGFPI-IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER  270 (539)
T ss_pred             CCcc-----cccCCCCCc-cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc
Confidence            1111     111111111 11112223366788899999999999999999999999999999 9999999999999999


Q ss_pred             hcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 004622          353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE  432 (741)
Q Consensus       353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  432 (741)
                      |.+..++.....+...-.+... ....-...+..+|..+...++++.|+.+|++++.....        ..+.-+....+
T Consensus       271 ~~~~~c~~~c~~a~E~gre~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~E  341 (539)
T KOG0548|consen  271 GKYAECIELCEKAVEVGRELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAE  341 (539)
T ss_pred             cHHHHhhcchHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHH
Confidence            9999998863332221111000 00001223334555666666666666666666554433        33444455555


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       433 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                      +++.......-.+|.-.......|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|.+..|+...+.++++
T Consensus       342 k~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  342 KALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            66666555555566555555555666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Q 004622          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (741)
Q Consensus       513 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  564 (741)
                      +|+...+|...|.++..+.+|++|++.|+++++.+|++..+...+..+...+
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            6666666666666666666666666666666666666665555555555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=5.6e-37  Score=363.60  Aligned_cols=361  Identities=13%  Similarity=0.024  Sum_probs=310.0

Q ss_pred             hhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH--------
Q 004622          310 KLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV--------  381 (741)
Q Consensus       310 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--------  381 (741)
                      ..|..+...|++++|+..|++++..+|++..++..++.++...|++++|+.        .+.+.....|...        
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~--------~l~~Al~~~p~~~~~~~~~~l  345 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA--------QFEKALALDPHSSNRDKWESL  345 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCccchhHHHHH
Confidence            458899999999999999999999999999999999999999999999999        4444444444332        


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004622          382 ------DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (741)
Q Consensus       382 ------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l  455 (741)
                            ......|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+
T Consensus       346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L  425 (1157)
T PRK11447        346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL  425 (1157)
T ss_pred             HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                  12345688899999999999999999999999999999999999999999999999999999999987766554


Q ss_pred             HH------------------------------------------HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004622          456 GQ------------------------------------------ARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (741)
Q Consensus       456 a~------------------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (741)
                      +.                                          ++...|++++|+..|+++++.+|+++.+++.+|.+|
T Consensus       426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~  505 (1157)
T PRK11447        426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL  505 (1157)
T ss_pred             HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44                                          344679999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------------
Q 004622          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA------------------------------  543 (741)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a------------------------------  543 (741)
                      ...|++++|+..++++++.+|+++..++.++..+...+++++|+..++++                              
T Consensus       506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD  585 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999999999999999988888887777777777777766542                              


Q ss_pred             ----------HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622          544 ----------IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSR  613 (741)
Q Consensus       544 ----------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (741)
                                ++..|.++..+..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|++.+++++.
T Consensus       586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence                      2246777888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc---------ccchhhHHHHhcCCCchhHhhhHHHHHh
Q 004622          614 TMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS---------FAGLTLMEILIPSSRNIGAKDCIPRMYV  680 (741)
Q Consensus       614 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  680 (741)
                      ..|++ ... +..+|.++...|++++|+.+++.+....+         .....++.++...|+.++|+..|+.+..
T Consensus       666 ~~p~~-~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        666 TANDS-LNT-QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             cCCCC-hHH-HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88887 444 78889999999999999987777644322         1334568888999999999999988865

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-36  Score=294.44  Aligned_cols=445  Identities=19%  Similarity=0.197  Sum_probs=332.7

Q ss_pred             HHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004622           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (741)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~  112 (741)
                      ..+...+.+++++|.+|+|++||++|++||+..|+ +.+|.||+.||..+|+|++-+++|.++|+++|++.+|+++++.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            34566679999999999999999999999999966 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHhhhhccccc-cCcCCccchhhhhccccccCccchhhhh
Q 004622          113 FSALGRKEEALSVWEKGYEH-ALHQSADLKQFLELEELLTAAKQDRSVTCE-YDVSNSMSSLTVSESGLNANDKMSETSE  190 (741)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (741)
                      +.++|++++|+.+..-.--+ +.+|.. ....+..+....+.+.....+.. +.+....            ......   
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~s-~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS------------~~fi~s---  256 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNAS-IEPMAERVLKKQAMKKAKEKLKENRPPVLPS------------ATFIAS---  256 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccch-hHHHHHHHHHHHHHHHHHHhhcccCCCCCCc------------HHHHHH---
Confidence            99999999999876543222 233333 33333333333322211111110 0111000            000000   


Q ss_pred             ccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcc
Q 004622          191 NHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDA  270 (741)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (741)
                                                                              .+++......              
T Consensus       257 --------------------------------------------------------yf~sF~~~~~--------------  266 (606)
T KOG0547|consen  257 --------------------------------------------------------YFGSFHADPK--------------  266 (606)
T ss_pred             --------------------------------------------------------HHhhcccccc--------------
Confidence                                                                    0000000000              


Q ss_pred             cccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcC---ChhhHHHHHHHhhccCCCCchhHHHHHH
Q 004622          271 SEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLN---DSNTNSESYSKSSISDNKSSDSTESRSK  347 (741)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~  347 (741)
                                    ....           .....++....-+....-.+   .|.+|...+.+.....-...        
T Consensus       267 --------------~~~~-----------~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~--------  313 (606)
T KOG0547|consen  267 --------------PLFD-----------NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSL--------  313 (606)
T ss_pred             --------------cccc-----------CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhc--------
Confidence                          0000           00001111111111111112   44455554444433210000        


Q ss_pred             HHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004622          348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF  427 (741)
Q Consensus       348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  427 (741)
                                           +...+...-...+.++...|..++-.|++-.|...|+.++..+|.+...|..+|..|..
T Consensus       314 ---------------------~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d  372 (606)
T KOG0547|consen  314 ---------------------SVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYAD  372 (606)
T ss_pred             ---------------------cccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhh
Confidence                                 11111111123356777889999999999999999999999999998889999999999


Q ss_pred             cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS  507 (741)
Q Consensus       428 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  507 (741)
                      ..+.++-...|.++..++|.++++|+..|.+++-.+++++|+..|++++.++|++.-.+..++...+++++++++...|+
T Consensus       373 ~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe  452 (606)
T KOG0547|consen  373 ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE  452 (606)
T ss_pred             hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHH-HcCChHHHHHHHHHHHhh
Q 004622          508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQ-DLANSEKALECLQQVLYI  580 (741)
Q Consensus       508 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~  580 (741)
                      .+.+..|+.++++...|.++..++++++|++.|.+++++.|.      ++..+...|.+.. -.+++..|+..+++++++
T Consensus       453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~  532 (606)
T KOG0547|consen  453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL  532 (606)
T ss_pred             HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999998      5555555554433 348999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       581 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      +|....++..+|.+..++|+.++|+++|+++..+..+.
T Consensus       533 Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  533 DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999999999998876553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.8e-35  Score=349.16  Aligned_cols=499  Identities=14%  Similarity=0.034  Sum_probs=387.4

Q ss_pred             HHHHHH-HhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHH------------
Q 004622           41 IELAKL-CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY------------  106 (741)
Q Consensus        41 ~~~~~~-~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------------  106 (741)
                      ++-.++ -..++++.|.+.+.+++.++ +++..+..++.++++.|++++|...++++++++|+++.++            
T Consensus        32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~  111 (1157)
T PRK11447         32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPE  111 (1157)
T ss_pred             HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCc
Confidence            333344 48899999999999999999 7888899999999999999999999999999999998864            


Q ss_pred             ----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccC
Q 004622          107 ----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNAN  182 (741)
Q Consensus       107 ----~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (741)
                          +.+|.++...|++++|+..|++++..+|.+.............    ..       ++...+...+..   .+..+
T Consensus       112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~----~~-------g~~~~A~~~L~~---ll~~~  177 (1157)
T PRK11447        112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAK----LP-------AQRPEAINQLQR---LNADY  177 (1157)
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhh----CC-------ccHHHHHHHHHH---HHHhC
Confidence                6678899999999999999999999999887511111110000    00       000000000000   00001


Q ss_pred             ccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCC
Q 004622          183 DKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSK  262 (741)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (741)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (1157)
T PRK11447        178 --------------------------------------------------------------------------------  177 (1157)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccC-------
Q 004622          263 STHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD-------  335 (741)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------  335 (741)
                                                             +........+|..++..|++++|+..+++++...       
T Consensus       178 ---------------------------------------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa  218 (1157)
T PRK11447        178 ---------------------------------------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA  218 (1157)
T ss_pred             ---------------------------------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence                                                   1123344556666666666666666666654422       


Q ss_pred             ---------------------------CCCch--------------------hHHHHHHHHHchhcHHHHHHHHHHhHHH
Q 004622          336 ---------------------------NKSSD--------------------STESRSKLSFKWDMLKETSNEAKRNKKF  368 (741)
Q Consensus       336 ---------------------------p~~~~--------------------~~~~la~~~~~~g~~~~a~~~~~~~~~~  368 (741)
                                                 |.+..                    ....++.++...|++++|+.        
T Consensus       219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~--------  290 (1157)
T PRK11447        219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIP--------  290 (1157)
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHH--------
Confidence                                       22111                    01133666777888888888        


Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcccHHHH
Q 004622          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA  434 (741)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~A  434 (741)
                      .+.......|.+..++..+|.++...|++++|+.+|+++++.+|++..              ....+|.++...|++++|
T Consensus       291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA  370 (1157)
T PRK11447        291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA  370 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence            677777778888999999999999999999999999999999887642              123457788899999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH-----------------------
Q 004622          435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI-----------------------  491 (741)
Q Consensus       435 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------------  491 (741)
                      +..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.                       
T Consensus       371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~  450 (1157)
T PRK11447        371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR  450 (1157)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence            999999999999999999999999999999999999999999999988766554443                       


Q ss_pred             -------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 004622          492 -------------------VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (741)
Q Consensus       492 -------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  552 (741)
                                         ++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+++.
T Consensus       451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence                               3446789999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHH----------------------------------------HhhCcccHHHHHHHH
Q 004622          553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG  592 (741)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~a----------------------------------------l~~~p~~~~~~~~la  592 (741)
                      .++.++..+...+++++|+..++++                                        +...|.++..+..+|
T Consensus       531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La  610 (1157)
T PRK11447        531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA  610 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence            8887777777777777776665542                                        224677788889999


Q ss_pred             HHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCch
Q 004622          593 LLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNI  669 (741)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~  669 (741)
                      .++...|++++|+..|+++++.+|++ ... +..++.++...|++++|+.+++.+....|   .....++.++...|+++
T Consensus       611 ~~~~~~g~~~~A~~~y~~al~~~P~~-~~a-~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~  688 (1157)
T PRK11447        611 DWAQQRGDYAAARAAYQRVLTREPGN-ADA-RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA  688 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC-HHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999998 566 99999999999999999988877655443   46677899999999999


Q ss_pred             hHhhhHHHHHhhh
Q 004622          670 GAKDCIPRMYVKR  682 (741)
Q Consensus       670 ~A~~~~~~~~~~~  682 (741)
                      +|+..|+.+....
T Consensus       689 eA~~~~~~al~~~  701 (1157)
T PRK11447        689 AAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHHHHHHhhhC
Confidence            9999999887643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.3e-33  Score=315.09  Aligned_cols=429  Identities=16%  Similarity=0.116  Sum_probs=346.9

Q ss_pred             hHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 004622           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (741)
Q Consensus        71 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  150 (741)
                      .+.++|..+++.|+|++|+..|++++.++|+ +..+..+|.||..+|++++|+..++++++++|++..            
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~------------  195 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK------------  195 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH------------
Confidence            3678899999999999999999999999996 679999999999999999999999999999998876            


Q ss_pred             HHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccC
Q 004622          151 TAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKG  230 (741)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (741)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (615)
T TIGR00990       196 --------------------------------------------------------------------------------  195 (615)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHh
Q 004622          231 GSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDK  310 (741)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (741)
                                                                                                  .+..
T Consensus       196 ----------------------------------------------------------------------------a~~~  199 (615)
T TIGR00990       196 ----------------------------------------------------------------------------ALNR  199 (615)
T ss_pred             ----------------------------------------------------------------------------HHHH
Confidence                                                                                        1223


Q ss_pred             hhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHH
Q 004622          311 LSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA  390 (741)
Q Consensus       311 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  390 (741)
                      +|..+...|++++|+..|..+...++.+.............    ..+..        .........|.....+..++..
T Consensus       200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~--------~~~~~l~~~~~~~~~~~~~~~~  267 (615)
T TIGR00990       200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAES--------KAKEILETKPENLPSVTFVGNY  267 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHH--------HHHHHHhcCCCCCCCHHHHHHH
Confidence            56777888999999999988887765544432222111111    11122        1222223344443344445543


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCC
Q 004622          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQS---NPSAGEAWKRRGQARAALGE  464 (741)
Q Consensus       391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~  464 (741)
                      + .......+...+......++.....+..++..+.   ..+++++|+..|++++..   .|....++..+|.++...|+
T Consensus       268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~  346 (615)
T TIGR00990       268 L-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK  346 (615)
T ss_pred             H-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Confidence            3 2223333344455555666666666666665543   347899999999999986   47778899999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (741)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  544 (741)
                      +++|+..+++++.++|.+...+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++
T Consensus       347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal  426 (615)
T TIGR00990       347 HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI  426 (615)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchH----
Q 004622          545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLI----  620 (741)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----  620 (741)
                      ..+|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|....    
T Consensus       427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~  506 (615)
T TIGR00990       427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN  506 (615)
T ss_pred             HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999886411    


Q ss_pred             -HHHHHHHH-HHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622          621 -WNLTRWRN-LCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMYVKR  682 (741)
Q Consensus       621 -~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (741)
                       .. +...+ .++...|++++|+.+++......|   .....++.++...|++++|+..|+.+....
T Consensus       507 ~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       507 VLP-LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence             11 22333 344457999999977776443334   467889999999999999999999887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.6e-34  Score=299.16  Aligned_cols=532  Identities=14%  Similarity=0.084  Sum_probs=435.3

Q ss_pred             HHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622           52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRKEEALSVWEKG  129 (741)
Q Consensus        52 ~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~a  129 (741)
                      ++.|...|...+... +|..++..+|.+.+..|+|..|+..|++++.++|.. ++.++.+|.|+.++|+.+.|+.+|+++
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence            589999999999988 788889999999999999999999999999999987 558899999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCccccc
Q 004622          130 YEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSE  209 (741)
Q Consensus       130 l~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (741)
                      ++++|.+.. +..+|..+.....-.++        ...++..+.+.+..-..+|.....+.++-.-              
T Consensus       226 lqLdp~~v~-alv~L~~~~l~~~d~~s--------~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf--------------  282 (1018)
T KOG2002|consen  226 LQLDPTCVS-ALVALGEVDLNFNDSDS--------YKKGVQLLQRAYKENNENPVALNHLANHFYF--------------  282 (1018)
T ss_pred             HhcChhhHH-HHHHHHHHHHHccchHH--------HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh--------------
Confidence            999998888 77777776665522221        2223344445555555566666555511110              


Q ss_pred             ccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCC
Q 004622          210 TCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPID  289 (741)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (741)
                                              -..++++........                                         
T Consensus       283 ------------------------K~dy~~v~~la~~ai-----------------------------------------  297 (1018)
T KOG2002|consen  283 ------------------------KKDYERVWHLAEHAI-----------------------------------------  297 (1018)
T ss_pred             ------------------------cccHHHHHHHHHHHH-----------------------------------------
Confidence                                    001111111000000                                         


Q ss_pred             CccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCC-chhHHHHHHHHHchhcHHHHHHHHHHhHHH
Q 004622          290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKS-SDSTESRSKLSFKWDMLKETSNEAKRNKKF  368 (741)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~a~~~~~~~~~~  368 (741)
                            .........++.+..+|..++.+|+|++|..+|.+++..+|++ +-.+..+|..+...|+++.+..        
T Consensus       298 ------~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~--------  363 (1018)
T KOG2002|consen  298 ------KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF--------  363 (1018)
T ss_pred             ------HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH--------
Confidence                  0000112456778999999999999999999999999999998 7788999999999999999999        


Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622          369 CVTRISKSKSISVDFRLSRGIAQVNEG----KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (741)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  444 (741)
                      +++.+....|.+.+....+|..|...+    ..+.|..+..++++..|.+.++|..++.++....-+ .++..|.+++..
T Consensus       364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~  442 (1018)
T KOG2002|consen  364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDI  442 (1018)
T ss_pred             HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHH
Confidence            999999999999999999999998886    678999999999999999999999999998765544 449999988843


Q ss_pred             -----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          445 -----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNS-----ADILHERGIVNFKFKDFNAAVEDLSAC  509 (741)
Q Consensus       445 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (741)
                           .+-.++.+.++|..++..|++.+|...|.+++..     +++.     ....+++|.++...++++.|.+.|..+
T Consensus       443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I  522 (1018)
T KOG2002|consen  443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI  522 (1018)
T ss_pred             HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence                 3456789999999999999999999999999887     1211     235899999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--ccHHH
Q 004622          510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKA  587 (741)
Q Consensus       510 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~  587 (741)
                      ++.+|....++..+|......++..+|..++..++..+..++.++..+|.++....++..|.+-|+..++.-.  .++.+
T Consensus       523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys  602 (1018)
T KOG2002|consen  523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS  602 (1018)
T ss_pred             HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence            9999999999999998888889999999999999999999999999999999999999999998887775422  35677


Q ss_pred             HHHHHHHHHH------------CCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccC---Cc
Q 004622          588 YHLRGLLLHG------------LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKST---VS  652 (741)
Q Consensus       588 ~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~  652 (741)
                      ...||+++..            .+.+++|++.|.+++..+|.| .++ -..+|.|+...|++.+|...|..+...   .+
T Consensus       603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN-~yA-ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~  680 (1018)
T KOG2002|consen  603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKN-MYA-ANGIGIVLAEKGRFSEARDIFSQVREATSDFE  680 (1018)
T ss_pred             HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcch-hhh-ccchhhhhhhccCchHHHHHHHHHHHHHhhCC
Confidence            7888887764            356788999999999999999 677 788999999999999999888776443   44


Q ss_pred             ccchhhHHHHhcCCCchhHhhhHHHHHhhhhhccch
Q 004622          653 FAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLP  688 (741)
Q Consensus       653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  688 (741)
                      .++.++|.+|..+|+|..|++.|+..++......-+
T Consensus       681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~  716 (1018)
T KOG2002|consen  681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS  716 (1018)
T ss_pred             ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            799999999999999999999999998888754443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=1.8e-30  Score=293.41  Aligned_cols=553  Identities=10%  Similarity=-0.024  Sum_probs=315.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      .++..+..+|||++|+..|++|++++ .+...++.++.+|++.|++++|+..++++++.+|++...+..+|.+    +++
T Consensus        49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~  124 (987)
T PRK09782         49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVE  124 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccC
Confidence            44555677899999999999999999 6677799999999999999999999999999999999888887666    999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHH------HHHHHHhhhhcccc--ccCcC--Cccchh--hhhccccccCccchh
Q 004622          120 EEALSVWEKGYEHALHQSADLKQFLELE------ELLTAAKQDRSVTC--EYDVS--NSMSSL--TVSESGLNANDKMSE  187 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~------~~~~~~~~~~~~~~--~~~~~--~~~~~~--~~~~~~l~~~~~~~~  187 (741)
                      ++|+..|+++++++|++.. +...+...      .......+....+.  ...+.  .....+  .+++..+..-+....
T Consensus       125 ~kA~~~ye~l~~~~P~n~~-~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~  203 (987)
T PRK09782        125 VKSVTTVEELLAQQKACDA-VPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADT  203 (987)
T ss_pred             hhHHHHHHHHHHhCCCChh-HHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence            9999999999999999999 66555554      10111111111000  00000  000000  011111111010111


Q ss_pred             hhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCccccccccc-CCCCCCCCCCCCC
Q 004622          188 TSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN-HNGSSDGSKSTHA  266 (741)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  266 (741)
                      .+.                                   .+.+..   +..+.....   +..+... ..+ .        
T Consensus       204 lL~-----------------------------------~L~k~~---pl~~~~~~~---L~~ay~q~l~~-~--------  233 (987)
T PRK09782        204 LYN-----------------------------------EARQQN---TLSAAERRQ---WFDVLLAGQLD-D--------  233 (987)
T ss_pred             HHH-----------------------------------HHHhcC---CCCHHHHHH---HHHHHHHhhCH-H--------
Confidence            110                                   000000   000000000   0000000 000 0        


Q ss_pred             CCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccC---CCCchhHH
Q 004622          267 SRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD---NKSSDSTE  343 (741)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~  343 (741)
                        .+                     ... . .+..+........++..+...|+.++|...+.+.-...   |.+...+.
T Consensus       234 --~a---------------------~al-~-~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~  288 (987)
T PRK09782        234 --RL---------------------LAL-Q-SQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY  288 (987)
T ss_pred             --HH---------------------HHH-h-chhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence              00                     000 0 00112567778889999999999999998888865554   33444444


Q ss_pred             HHHHHH-----------------------------HchhcHHHHHHHHH-------HhHHH--------------HHHHh
Q 004622          344 SRSKLS-----------------------------FKWDMLKETSNEAK-------RNKKF--------------CVTRI  373 (741)
Q Consensus       344 ~la~~~-----------------------------~~~g~~~~a~~~~~-------~~~~~--------------~~~~~  373 (741)
                      .++...                             ...+.+..+.....       .....              ....+
T Consensus       289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  368 (987)
T PRK09782        289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL  368 (987)
T ss_pred             HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence            443332                             23333332221100       00000              00111


Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------
Q 004622          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED------------------------------------------  411 (741)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------------------------------  411 (741)
                      ....|.+...+...+......|++++|...|+++....                                          
T Consensus       369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  448 (987)
T PRK09782        369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR  448 (987)
T ss_pred             HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence            22346677777788888888888888888887765521                                          


Q ss_pred             -----------------------CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 004622          412 -----------------------PM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (741)
Q Consensus       412 -----------------------p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  466 (741)
                                             |.  ++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|+++
T Consensus       449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~e  526 (987)
T PRK09782        449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYA  526 (987)
T ss_pred             HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHH
Confidence                                   22  44455556655554 555666666666666666533 2444455555666666


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (741)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  546 (741)
                      +|+..++++....|.+ ..+..+|.++...|++++|+.+++++++.+|.....+..++......|++++|+..++++++.
T Consensus       527 eAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l  605 (987)
T PRK09782        527 TALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI  605 (987)
T ss_pred             HHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            6666666655554432 334555666666666666666666666666666555555555555556666666666666666


Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHH
Q 004622          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRW  626 (741)
Q Consensus       547 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  626 (741)
                      +|+ +.++..+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++ ... ++.
T Consensus       606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-~~a-~~n  682 (987)
T PRK09782        606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-PAL-IRQ  682 (987)
T ss_pred             CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHH-HHH
Confidence            664 56666666666666666666666666666666666666666666666666666666666666666665 333 666


Q ss_pred             HHHHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHH
Q 004622          627 RNLCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMY  679 (741)
Q Consensus       627 la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~  679 (741)
                      +|.++...|++++|+.+++.+....|   .+....+++.....++..|.+.+.+..
T Consensus       683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            66666666666666655555443333   234444555555555555555444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=2.4e-30  Score=292.51  Aligned_cols=367  Identities=10%  Similarity=-0.059  Sum_probs=307.4

Q ss_pred             ccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCC---chhHHHHHHHHHchhc---HHHHHHH-----------
Q 004622          299 RQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKS---SDSTESRSKLSFKWDM---LKETSNE-----------  361 (741)
Q Consensus       299 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~---~~~a~~~-----------  361 (741)
                      +......+.+..++......|++++|...|+.++...++.   ......++.+|...+.   ...+...           
T Consensus       370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  449 (987)
T PRK09782        370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ  449 (987)
T ss_pred             hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence            3446677888889999999999999999999999973322   2345588888887765   2222111           


Q ss_pred             -HH-----HhHHHHHHHhhccCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 004622          362 -AK-----RNKKFCVTRISKSKSI--SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA  433 (741)
Q Consensus       362 -~~-----~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  433 (741)
                       ..     ..............|.  ...+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++
T Consensus       450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~ee  527 (987)
T PRK09782        450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYAT  527 (987)
T ss_pred             HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHH
Confidence             00     0001133344455566  89999999999987 899999999999999999854 46677888889999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (741)
Q Consensus       434 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (741)
                      |+..|++++...|.+ ..+..+|.++...|++++|+.+++++++..|.....+..++......|++++|+..++++++.+
T Consensus       528 Ai~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~  606 (987)
T PRK09782        528 ALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA  606 (987)
T ss_pred             HHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence            999999988776654 5578899999999999999999999999999998888888877888899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHH
Q 004622          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (741)
Q Consensus       514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  593 (741)
                      |+ ..++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.
T Consensus       607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~  685 (987)
T PRK09782        607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY  685 (987)
T ss_pred             CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            96 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhHHHHhcCCCchhH
Q 004622          594 LLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLMEILIPSSRNIGA  671 (741)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A  671 (741)
                      ++...|++++|+..|++++.++|++  ..+....|.+.....+++.|...++......+  .++...+.++...+++-++
T Consensus       686 al~~lGd~~eA~~~l~~Al~l~P~~--a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~~~~~~~~~  763 (987)
T PRK09782        686 VNQRLDDMAATQHYARLVIDDIDNQ--ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGGA  763 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCC--chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhccccchHhhhcccccCC
Confidence            9999999999999999999999987  44488999999999999999965555433333  2666677777777776444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=4.8e-30  Score=284.81  Aligned_cols=384  Identities=10%  Similarity=-0.015  Sum_probs=331.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc----CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004622           43 LAKLCSLRNWSKAIRILDSLLAQS----YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (741)
Q Consensus        43 ~~~~~~~g~~~~Ai~~~~~al~~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  118 (741)
                      -+.++++.||+.-.-+|+.+-+..    .+.......+...++.|++++|+..++.++...|+++.+++.+|.+....|+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~   91 (656)
T PRK15174         12 PTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ   91 (656)
T ss_pred             chhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC
Confidence            355788999998888888876633    4444466678889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCccc
Q 004622          119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC  198 (741)
Q Consensus       119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  198 (741)
                      +++|+..|++++.++|+++. +                                                          
T Consensus        92 ~~~A~~~l~~~l~~~P~~~~-a----------------------------------------------------------  112 (656)
T PRK15174         92 PDAVLQVVNKLLAVNVCQPE-D----------------------------------------------------------  112 (656)
T ss_pred             HHHHHHHHHHHHHhCCCChH-H----------------------------------------------------------
Confidence            99999999999999999877 1                                                          


Q ss_pred             ccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCC
Q 004622          199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS  278 (741)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (741)
                                                                                                      
T Consensus       113 --------------------------------------------------------------------------------  112 (656)
T PRK15174        113 --------------------------------------------------------------------------------  112 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHH
Q 004622          279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET  358 (741)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a  358 (741)
                                                   +..+|..+...|++++|+..|++++..+|+++.++..++.++...|++++|
T Consensus       113 -----------------------------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA  163 (656)
T PRK15174        113 -----------------------------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA  163 (656)
T ss_pred             -----------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH
Confidence                                         122456677788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHH
Q 004622          359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISD  437 (741)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~  437 (741)
                      ..        .+..+....|.....+...+ .+...|++++|+..+++++..+|. .......++.++...|++++|+..
T Consensus       164 ~~--------~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~  234 (656)
T PRK15174        164 IS--------LARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT  234 (656)
T ss_pred             HH--------HHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence            98        55566666777777776654 478899999999999999998763 344556678899999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622          438 FTEAIQSNPSAGEAWKRRGQARAALGESVE----AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (741)
Q Consensus       438 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (741)
                      +++++..+|+++.++..+|.++...|++++    |+..++++++.+|+++.++..+|.++...|++++|+..+++++..+
T Consensus       235 ~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~  314 (656)
T PRK15174        235 GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH  314 (656)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999986    8999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH-----HHH
Q 004622          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-----KAY  588 (741)
Q Consensus       514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~  588 (741)
                      |+++.++..+|.++...|++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|++.     ++.
T Consensus       315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~  394 (656)
T PRK15174        315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGL  394 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHH
Confidence            999999999999999999999999999999999999888778889999999999999999999999988753     233


Q ss_pred             HHHHHHHHHCCChHH
Q 004622          589 HLRGLLLHGLGQHKK  603 (741)
Q Consensus       589 ~~la~~~~~~g~~~~  603 (741)
                      ..+...+...+...+
T Consensus       395 ~~~~~~~~~~~~~~~  409 (656)
T PRK15174        395 LALDGQISAVNLPPE  409 (656)
T ss_pred             HHHHHHHHhcCCccc
Confidence            344444444444433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.6e-29  Score=262.41  Aligned_cols=528  Identities=16%  Similarity=0.081  Sum_probs=282.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhc--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLEL--HKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  117 (741)
                      .+..+.-+..-+..|.-+|+.|-.++ .....+..++..++..|.  ++.|...|..++...|+|+.+++.+|++.+..|
T Consensus        99 kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk  178 (1018)
T KOG2002|consen   99 KEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKK  178 (1018)
T ss_pred             HHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccc
Confidence            55555556677889999999998888 444445555555555555  599999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcc
Q 004622          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI  197 (741)
Q Consensus       118 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  197 (741)
                      +|..|+..|+++|.++|....+...+...+-.......           .++.   .....+.-+|.             
T Consensus       179 dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~-----------~a~~---a~~ralqLdp~-------------  231 (1018)
T KOG2002|consen  179 DYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE-----------KALL---AFERALQLDPT-------------  231 (1018)
T ss_pred             cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh-----------hHHH---HHHHHHhcChh-------------
Confidence            99999999999999999887733333222211110000           0000   00000000110             


Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCC
Q 004622          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (741)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (741)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (1018)
T KOG2002|consen  232 --------------------------------------------------------------------------------  231 (1018)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccCCCCCCCccccccccccCCCchHHHHhhhhHH---HhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc
Q 004622          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDS---ASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (741)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~---~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  354 (741)
                                                ...+...||...   .....+..++..+.++...+|.+|.+++.++.-++..|+
T Consensus       232 --------------------------~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d  285 (1018)
T KOG2002|consen  232 --------------------------CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD  285 (1018)
T ss_pred             --------------------------hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence                                      011111111111   111233344444455555555555555555555555555


Q ss_pred             HHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHH
Q 004622          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEA  433 (741)
Q Consensus       355 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~  433 (741)
                      |..+......+....     ...+..++.++.+|+++..+|+|++|..+|.++++.+|++ .-.++.+|..|+..|+++.
T Consensus       286 y~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~  360 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEE  360 (1018)
T ss_pred             HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHH
Confidence            544444322221111     1122223344445555555555555555555555544444 3444445555555555555


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCCH--------------------------
Q 004622          434 AISDFTEAIQSNPSAGEAWKRRGQARAALG----ESVEAIQDLSKALEFEPNSA--------------------------  483 (741)
Q Consensus       434 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~--------------------------  483 (741)
                      |+.+|++++...|++.+....+|.+|...+    ..+.|..++.++++..|.+.                          
T Consensus       361 s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~  440 (1018)
T KOG2002|consen  361 SKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNAL  440 (1018)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            555555555555555544444444444433    33444444444444444444                          


Q ss_pred             ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          484 ------------DILHERGIVNFKFKDFNAAVEDLSACVKL-----DKEN-----KSAYTYLGLALSSIGEYKKAEEAHL  541 (741)
Q Consensus       484 ------------~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~  541 (741)
                                  +.++++|..++..|++.+|...|..++..     +++.     ....+++|.++...++++.|.+.|.
T Consensus       441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk  520 (1018)
T KOG2002|consen  441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK  520 (1018)
T ss_pred             HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence                        44555555555555555555555555543     1111     1235555555555555555555555


Q ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc-hH
Q 004622          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH-LI  620 (741)
Q Consensus       542 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~  620 (741)
                      .+++..|....++..+|.+....++..+|...+..++..+..++.++..+|.++....++..|.+-|+..+...... ..
T Consensus       521 ~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~  600 (1018)
T KOG2002|consen  521 SILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA  600 (1018)
T ss_pred             HHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence            55555555555555555555555555555555555555555555555555655555555555555444444321111 12


Q ss_pred             HHHHHHHHHHHHh------------CCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHHhhhh--
Q 004622          621 WNLTRWRNLCFNA------------WPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMYVKRF--  683 (741)
Q Consensus       621 ~~~~~~la~~~~~------------~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--  683 (741)
                      .+ ...||.++.+            .+.++.|+.+|..+...+|   ++...+|-++...|++.+|+..|.+.-...-  
T Consensus       601 Ys-liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~  679 (1018)
T KOG2002|consen  601 YS-LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF  679 (1018)
T ss_pred             hH-HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC
Confidence            22 4455555432            2345666666665544444   4566677777777777777777765533321  


Q ss_pred             hcc------chhhhhhhhhccchhHHhhhh
Q 004622          684 TDS------LPCVILSKRESSGDKTFLLQS  707 (741)
Q Consensus       684 ~~~------~~~~~~~~~~a~~~~~~~l~~  707 (741)
                      .+.      .....++|+.|...|...+.+
T Consensus       680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkk  709 (1018)
T KOG2002|consen  680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKK  709 (1018)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            010      134456777777666665544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.98  E-value=6.9e-29  Score=275.60  Aligned_cols=336  Identities=12%  Similarity=0.007  Sum_probs=310.9

Q ss_pred             HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622          306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL  385 (741)
Q Consensus       306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (741)
                      ..+......+...|++++|+..+...+...|.+..++..++.+....|++++|..        .+..+....|.+..++.
T Consensus        43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~--------~l~~~l~~~P~~~~a~~  114 (656)
T PRK15174         43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQ--------VVNKLLAVNVCQPEDVL  114 (656)
T ss_pred             cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHH--------HHHHHHHhCCCChHHHH
Confidence            3455567788999999999999999999999999999999999999999999999        88888889999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  465 (741)
                      .+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++
T Consensus       115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~  193 (656)
T PRK15174        115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRL  193 (656)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999998887765 47889999


Q ss_pred             HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHH
Q 004622          466 VEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK----AEEAH  540 (741)
Q Consensus       466 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~  540 (741)
                      ++|+..+++++...|. .......++.++...|++++|+..+++++..+|+++.++..+|.++...|++++    |+..|
T Consensus       194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~  273 (656)
T PRK15174        194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW  273 (656)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence            9999999999998763 444556678899999999999999999999999999999999999999999986    89999


Q ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchH
Q 004622          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLI  620 (741)
Q Consensus       541 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  620 (741)
                      ++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ .
T Consensus       274 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-~  352 (656)
T PRK15174        274 RHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-S  352 (656)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987 3


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc
Q 004622          621 WNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS  652 (741)
Q Consensus       621 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  652 (741)
                      .. +..+|.++...|++++|+..++......|
T Consensus       353 ~~-~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        353 KW-NRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            33 66679999999999999988877655544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=3.5e-28  Score=275.98  Aligned_cols=395  Identities=10%  Similarity=-0.010  Sum_probs=331.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 004622           46 LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALS  124 (741)
Q Consensus        46 ~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  124 (741)
                      +.-.|++++|+..|.+++..+ .....+.++|.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+.
T Consensus        25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            567899999999999999866 6666799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCC
Q 004622          125 VWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQS  204 (741)
Q Consensus       125 ~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  204 (741)
                      .++++++.+|++..                                                                  
T Consensus       105 ~l~~~l~~~P~~~~------------------------------------------------------------------  118 (765)
T PRK10049        105 KAKQLVSGAPDKAN------------------------------------------------------------------  118 (765)
T ss_pred             HHHHHHHhCCCCHH------------------------------------------------------------------
Confidence            99999999988744                                                                  


Q ss_pred             cccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccC
Q 004622          205 RDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDIC  284 (741)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (741)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (765)
T PRK10049        119 --------------------------------------------------------------------------------  118 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHH
Q 004622          285 NGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKR  364 (741)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~  364 (741)
                                             +..+|..+...|++++|+..|++++...|++..++..++.++...+..++|+..   
T Consensus       119 -----------------------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~---  172 (765)
T PRK10049        119 -----------------------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA---  172 (765)
T ss_pred             -----------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH---
Confidence                                   112355566678999999999999999999999999999999999999988883   


Q ss_pred             hHHHHHHHhhccCCcc-----HHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHHHHHH
Q 004622          365 NKKFCVTRISKSKSIS-----VDFRLSRGIAQV-----NEGKY---ASAISIFDQILKEDPMYPEA-------LIGRGTA  424 (741)
Q Consensus       365 ~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~la~~  424 (741)
                           +..+.. .|..     ............     ..+++   ++|+..++.+++..|.++..       .......
T Consensus       173 -----l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~  246 (765)
T PRK10049        173 -----IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA  246 (765)
T ss_pred             -----HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence                 343333 2221     112222222222     22345   78999999999765444322       2221223


Q ss_pred             HHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCH
Q 004622          425 RAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDF  499 (741)
Q Consensus       425 ~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~  499 (741)
                      +...|++++|+..|+++++..|.. ..+...+|.++...|++++|+..|++++..+|.+    ......++.++...|++
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            467799999999999999886432 2344446999999999999999999999988766    45677788889999999


Q ss_pred             HHHHHHHHHHHHhCCC-------------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Q 004622          500 NAAVEDLSACVKLDKE-------------N--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (741)
Q Consensus       500 ~~A~~~~~~al~~~p~-------------~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  564 (741)
                      ++|+..++++....|.             +  ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~  406 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR  406 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            9999999999998763             2  356788999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       565 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      |++++|+..+++++..+|++..+++.+|.++...|++++|...++++++..|++
T Consensus       407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999999999998

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.7e-29  Score=242.98  Aligned_cols=370  Identities=16%  Similarity=0.079  Sum_probs=309.4

Q ss_pred             CCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH
Q 004622          302 NGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV  381 (741)
Q Consensus       302 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~  381 (741)
                      ...+..++..|+.+|+.|+|++||++|.++++..|+.+.++.+++.||...|++++.++        ......+.+|..+
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vie--------d~TkALEl~P~Y~  183 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIE--------DCTKALELNPDYV  183 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHH--------HHHHHhhcCcHHH
Confidence            56678899999999999999999999999999999999999999999999999999999        6777788899999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH------------------HHHHh--------------CCCCH--------------
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFD------------------QILKE--------------DPMYP--------------  415 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~------------------~al~~--------------~p~~~--------------  415 (741)
                      .+++.++.++...|++++|+....                  +.++.              .|.-|              
T Consensus       184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~  263 (606)
T KOG0547|consen  184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA  263 (606)
T ss_pred             HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence            999999999999999999976542                  22210              01101              


Q ss_pred             -------------HHHHHHHHHHHHcc---cHHHHHHHHHHHHHhC----CCc---------HHHHHHHHHHHHHcCChH
Q 004622          416 -------------EALIGRGTARAFQR---ELEAAISDFTEAIQSN----PSA---------GEAWKRRGQARAALGESV  466 (741)
Q Consensus       416 -------------~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~~~~~  466 (741)
                                   ++...-+.-+...+   .|.+|...+.+.....    ..+         ..++...|..++-.|++-
T Consensus       264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~  343 (606)
T KOG0547|consen  264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL  343 (606)
T ss_pred             cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence                         00001111111112   4555555555543221    112         567888899999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (741)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  546 (741)
                      .|...++.+|.++|.+...|+.+|.+|...++.++..+.|.++..++|+++.+|+..|.+++-++++++|+..|++++.+
T Consensus       344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L  423 (606)
T KOG0547|consen  344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL  423 (606)
T ss_pred             hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC------chH
Q 004622          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP------HLI  620 (741)
Q Consensus       547 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~  620 (741)
                      +|++..++..++.+.+++++++++...|+.+....|..++++...|.++..++++++|++.|.+++++.|.      + +
T Consensus       424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~-~  502 (606)
T KOG0547|consen  424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN-A  502 (606)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc-c
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988      4 2


Q ss_pred             HHHHHHHHHHHH-hCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHHhh
Q 004622          621 WNLTRWRNLCFN-AWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMYVK  681 (741)
Q Consensus       621 ~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  681 (741)
                      .. +...|.+.. -.+++..|+...+...+.+|   .++.+|+.+.+.+|+.++|++.|+....-
T Consensus       503 ~p-lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  503 AP-LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             hh-hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33 444444333 34889999977777666666   57889999999999999999999887553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=9.2e-27  Score=264.39  Aligned_cols=405  Identities=11%  Similarity=-0.011  Sum_probs=339.3

Q ss_pred             CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004622           67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (741)
Q Consensus        67 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~  146 (741)
                      -++....-...+....|++++|+..|.+++..+|....++..+|.++...|++++|+..|+++++++|+++. +..    
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-a~~----   87 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-YQR----   87 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHH----
Confidence            344445666788899999999999999999999999999999999999999999999999999999999977 211    


Q ss_pred             HHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcc
Q 004622          147 EELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSD  226 (741)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (741)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (765)
T PRK10049         88 --------------------------------------------------------------------------------   87 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchH
Q 004622          227 EAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHD  306 (741)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (741)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (765)
T PRK10049         88 --------------------------------------------------------------------------------   87 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHH
Q 004622          307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLS  386 (741)
Q Consensus       307 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (741)
                         .+|..+...|++++|+..+++++...|++.. +..++.++...|++++|+.        .+..+....|.+..+++.
T Consensus        88 ---~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~--------~l~~al~~~P~~~~~~~~  155 (765)
T PRK10049         88 ---GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR--------AMTQALPRAPQTQQYPTE  155 (765)
T ss_pred             ---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCCCHHHHHH
Confidence               1344556678999999999999999999999 9999999999999999999        888888899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH-----HcccH---HHHHHHHHHHHHhCCCcHHH--
Q 004622          387 RGIAQVNEGKYASAISIFDQILKEDPMYPE-----ALIGRGTARA-----FQREL---EAAISDFTEAIQSNPSAGEA--  451 (741)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~~~~---~~A~~~~~~~l~~~~~~~~~--  451 (741)
                      +|.++...|..++|+..++++.. .|....     ....+.....     ..+++   ++|+..++.+++..|.++..  
T Consensus       156 la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~  234 (765)
T PRK10049        156 YVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA  234 (765)
T ss_pred             HHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence            99999999999999999987775 554211     1122222222     22345   78999999999764443322  


Q ss_pred             -----HHH-HHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHH
Q 004622          452 -----WKR-RGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAY  520 (741)
Q Consensus       452 -----~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~  520 (741)
                           ... ++ .+...|++++|+..|+++++..|.. ..+...+|.+|...|++++|+.+|++++..+|.+    ....
T Consensus       235 ~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~  313 (765)
T PRK10049        235 DYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL  313 (765)
T ss_pred             HHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence                 222 33 3467799999999999999986543 2344557999999999999999999999988776    3567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRN---------------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (741)
Q Consensus       521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  585 (741)
                      ..++.++...|++++|+..++++....|.               ...++..++.++...|++++|+..+++++...|+++
T Consensus       314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~  393 (765)
T PRK10049        314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ  393 (765)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            77888889999999999999999998763               245778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc
Q 004622          586 KAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS  652 (741)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  652 (741)
                      .++..+|.++...|++++|++.+++++.++|++ .. +++.+|.++...|++++|...++.+....|
T Consensus       394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-~~-l~~~~a~~al~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRN-IN-LEVEQAWTALDLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999998 44 499999999999999999988877766555

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7e-27  Score=237.80  Aligned_cols=290  Identities=18%  Similarity=0.160  Sum_probs=143.3

Q ss_pred             ChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHH
Q 004622          320 DSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYAS  399 (741)
Q Consensus       320 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~  399 (741)
                      +..+|+..|.+.-...++...++..+|..||++++|+++..        ++..+-...|..++..-....+++...+--+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~--------~F~~~r~~~p~rv~~meiyST~LWHLq~~v~  405 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAER--------IFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA  405 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence            44455555555334444444444455555555555555544        3444333344333333333333333333333


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622          400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE  479 (741)
Q Consensus       400 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  479 (741)
                      --.+.+..+..+|+.|++|..+|.||..+++.+.|+++|+++++++|....+|..+|.=+....+++.|..+|++++..+
T Consensus       406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            33333444444555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 004622          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (741)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (741)
                      |.+-.+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.++++|+.++|.++-..+..|.
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP  617 (741)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  617 (741)
                      +++..+++++|+..+++..++.|++..+++.+|.+|.++|+.+.|+..|.-|..++|.
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            5555555555555555555555555555555555555555555555555555555444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.5e-25  Score=221.56  Aligned_cols=429  Identities=15%  Similarity=0.119  Sum_probs=276.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHH------HHhCCCC-----------------
Q 004622           46 LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKA------LQLDPTL-----------------  102 (741)
Q Consensus        46 ~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~p~~-----------------  102 (741)
                      ++-.|+|.+|....+.-.-...+..+.+..+.|+.++++|++|+..+.++      +.-+|.+                 
T Consensus        59 l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~  138 (611)
T KOG1173|consen   59 LYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMIN  138 (611)
T ss_pred             HHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccccccc
Confidence            57889999998887776333367777888899999999999999887722      2222222                 


Q ss_pred             --hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccc
Q 004622          103 --LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLN  180 (741)
Q Consensus       103 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  180 (741)
                        ...++.+|.+|..+.+.++|...|..|+..|+.+.+ +...+-..........-.                 +...+.
T Consensus       139 ~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E-a~~~lvs~~mlt~~Ee~~-----------------ll~~l~  200 (611)
T KOG1173|consen  139 LESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE-AFEKLVSAHMLTAQEEFE-----------------LLESLD  200 (611)
T ss_pred             chhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH-HHHHHHHHHhcchhHHHH-----------------HHhccc
Confidence              115788999999999999999999999999999999 555555555555322110                 000000


Q ss_pred             cC---ccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCC
Q 004622          181 AN---DKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGS  257 (741)
Q Consensus       181 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (741)
                      -.   ......+.     .+++..               -+...+... ..                             
T Consensus       201 ~a~~~~ed~e~l~-----~lyel~---------------~~k~~n~~~-~~-----------------------------  230 (611)
T KOG1173|consen  201 LAMLTKEDVERLE-----ILYELK---------------LCKNRNEES-LT-----------------------------  230 (611)
T ss_pred             HHhhhhhHHHHHH-----HHHHhh---------------hhhhccccc-cc-----------------------------
Confidence            00   00000000     000000               000000000 00                             


Q ss_pred             CCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCC
Q 004622          258 SDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNK  337 (741)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~  337 (741)
                                                        ..++...-......+.....+..+|..++|.+..++.+..++.+|-
T Consensus       231 ----------------------------------r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf  276 (611)
T KOG1173|consen  231 ----------------------------------RNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF  276 (611)
T ss_pred             ----------------------------------cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC
Confidence                                              0000001111233444555555555555555555555555555555


Q ss_pred             CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622          338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA  417 (741)
Q Consensus       338 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~  417 (741)
                      +...+.....                                          ++...|+..+-..+-.+.++.+|+.+..
T Consensus       277 h~~~~~~~ia------------------------------------------~l~el~~~n~Lf~lsh~LV~~yP~~a~s  314 (611)
T KOG1173|consen  277 HLPCLPLHIA------------------------------------------CLYELGKSNKLFLLSHKLVDLYPSKALS  314 (611)
T ss_pred             CcchHHHHHH------------------------------------------HHHHhcccchHHHHHHHHHHhCCCCCcc
Confidence            5444333222                                          4455555555555555666677777777


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (741)
Q Consensus       418 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (741)
                      |+.+|..|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|..++
T Consensus       315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~  394 (611)
T KOG1173|consen  315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN  394 (611)
T ss_pred             hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence            77777777777777777777777777777777777777777777777777777777777777777666777777777777


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----c---cHHHHHHHHHHHHHcCChHHH
Q 004622          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR----N---FLEAWGHLTQFYQDLANSEKA  570 (741)
Q Consensus       498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~---~~~~~~~la~~~~~~~~~~~A  570 (741)
                      +++-|.++|.+++.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-+    +   -...+.+||.++.+.+.+++|
T Consensus       395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            777777777777777777777777777777777777777777777763321    1   234577788888888888888


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       571 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      +.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            888888888888888888888888888888888888888888888877

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.95  E-value=4.5e-26  Score=219.69  Aligned_cols=471  Identities=15%  Similarity=0.109  Sum_probs=334.5

Q ss_pred             hhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC------hhhHHHHHHHHHhhhcHHHH
Q 004622           15 KTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE------IQDICNRAFCYSQLELHKHV   88 (741)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~------~~~~~~~a~~~~~~g~~~~A   88 (741)
                      ++.+++.....+++-.-++.+-+.--..++=+|++.+|.+||.+|..|+.+-|+      ...+.|.|..+.+.|+|+.|
T Consensus       216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da  295 (840)
T KOG2003|consen  216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA  295 (840)
T ss_pred             HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence            344555554444444322222121113455679999999999999999985532      22367899999999999999


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC------------ChHHHHHHHHHHHHHHHHh
Q 004622           89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA--LH------------QSADLKQFLELEELLTAAK  154 (741)
Q Consensus        89 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~------------~~~~~~~~l~~~~~~~~~~  154 (741)
                      +..|+.+++..|+... -+.+-.|++..|+-+...+.|++.+.+-  |+            +.. +.+.+..-......+
T Consensus       296 insfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l-l~eai~nd~lk~~ek  373 (840)
T KOG2003|consen  296 INSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL-LNEAIKNDHLKNMEK  373 (840)
T ss_pred             HhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH-HHHHHhhHHHHHHHH
Confidence            9999999999997764 4556688899999999999999998652  11            111 222222111111000


Q ss_pred             hhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCC
Q 004622          155 QDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSV  234 (741)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (741)
                      .+        -.++-..+......+.  |..                               .|.|........      
T Consensus       374 ~~--------ka~aek~i~ta~kiia--pvi-------------------------------~~~fa~g~dwcl------  406 (840)
T KOG2003|consen  374 EN--------KADAEKAIITAAKIIA--PVI-------------------------------APDFAAGCDWCL------  406 (840)
T ss_pred             hh--------hhhHHHHHHHHHHHhc--ccc-------------------------------ccchhcccHHHH------
Confidence            00        0000000000000000  000                               011111100000      


Q ss_pred             CccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhH
Q 004622          235 PVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSD  314 (741)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~  314 (741)
                             ..+..                                                   ..-.+-.-+.....+-.
T Consensus       407 -------e~lk~---------------------------------------------------s~~~~la~dlei~ka~~  428 (840)
T KOG2003|consen  407 -------ESLKA---------------------------------------------------SQHAELAIDLEINKAGE  428 (840)
T ss_pred             -------HHHHH---------------------------------------------------hhhhhhhhhhhhhHHHH
Confidence                   00000                                                   00000111233344667


Q ss_pred             HHhcCChhhHHHHHHHhhccCCCCc-hhHHHHHHHHHchh--cHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHH
Q 004622          315 SASLNDSNTNSESYSKSSISDNKSS-DSTESRSKLSFKWD--MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ  391 (741)
Q Consensus       315 ~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  391 (741)
                      +.++|+++.|++++.-.-..+.+.. .+.+++..+++.+|  ++..|..        +.......+..++.++...|.+.
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq--------yad~aln~dryn~~a~~nkgn~~  500 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ--------YADIALNIDRYNAAALTNKGNIA  500 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH--------HHHHHhcccccCHHHhhcCCcee
Confidence            8899999999998876655554332 34566777776654  3444444        55666677778888888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 004622          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~  471 (741)
                      +..|++++|...|++++..+....++++++|..+..+|+.++|+++|-+.-.+--++..+++.++.+|..+.+..+|+++
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            99999999999999999988888899999999999999999999999988888788889999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622          472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (741)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  551 (741)
                      +.++..+-|+++.++..+|.+|-+.|+-.+|..++-...+..|.+.....++|..|....-+++|+.+|+++--+.|+..
T Consensus       581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988889877


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCC
Q 004622          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (741)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  600 (741)
                      .....++.|+.+.|+|.+|...|+..-...|.+.+.+..+..+.-.+|-
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            7777888899999999999999999999999988888888887777664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.5e-24  Score=210.69  Aligned_cols=467  Identities=13%  Similarity=0.062  Sum_probs=370.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004622           39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (741)
Q Consensus        39 ~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  118 (741)
                      -|.....+..+..|+-|+-+-++...+..++...+-.|.++.-.|+|+.|.-..+.- .++-.+..+++..+.++.++.+
T Consensus        19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~   97 (611)
T KOG1173|consen   19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKE   97 (611)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHH
Confidence            344455889999999999999998888888888888999999999999998776655 6677788899999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccc-hhhhhccCCCcc
Q 004622          119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM-SETSENHNKSDI  197 (741)
Q Consensus       119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~  197 (741)
                      +++|+..+.++    |-...                                       .+...+.. ...+.       
T Consensus        98 ~~~al~vl~~~----~~~~~---------------------------------------~f~yy~~~~~~~l~-------  127 (611)
T KOG1173|consen   98 WDQALLVLGRG----HVETN---------------------------------------PFSYYEKDAANTLE-------  127 (611)
T ss_pred             HHHHHHHhccc----chhhc---------------------------------------chhhcchhhhceec-------
Confidence            99999877764    10000                                       00000000 00000       


Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCC
Q 004622          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (741)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (741)
                                     .   +..                                                          
T Consensus       128 ---------------~---n~~----------------------------------------------------------  131 (611)
T KOG1173|consen  128 ---------------L---NSA----------------------------------------------------------  131 (611)
T ss_pred             ---------------c---Ccc----------------------------------------------------------
Confidence                           0   000                                                          


Q ss_pred             CCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc---
Q 004622          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM---  354 (741)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---  354 (741)
                                        .+....+.++..+..-|..+...+++++|...|.+++..++..-++...+....+-...   
T Consensus       132 ------------------~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~  193 (611)
T KOG1173|consen  132 ------------------GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEF  193 (611)
T ss_pred             ------------------cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHH
Confidence                              00011123334455568888889999999999999999998887776666554442220   


Q ss_pred             -------HHHHHHHHHHhHHHHHHH-----------------hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          355 -------LKETSNEAKRNKKFCVTR-----------------ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE  410 (741)
Q Consensus       355 -------~~~a~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  410 (741)
                             +..-..+-.......++.                 ....-..+.+.....+..++..++|.+..++++..++.
T Consensus       194 ~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~  273 (611)
T KOG1173|consen  194 ELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK  273 (611)
T ss_pred             HHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh
Confidence                   000000000001111110                 01122356678889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004622          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG  490 (741)
Q Consensus       411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  490 (741)
                      +|-++..+-..-.++...|+..+-...-.+.++..|+.+..|+..|..|...|++.+|.++|.++..++|....+|...|
T Consensus       274 dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fg  353 (611)
T KOG1173|consen  274 DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFG  353 (611)
T ss_pred             CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHh
Confidence            99998877665559999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Q 004622          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA  570 (741)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A  570 (741)
                      ..+...|..++|+.+|..|-++-|........+|.-|.++++++-|..+|.+++.+.|.+|-++..+|.+.+..+.|.+|
T Consensus       354 hsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A  433 (611)
T KOG1173|consen  354 HSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEA  433 (611)
T ss_pred             HHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCc----c---cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHH
Q 004622          571 LECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLC  643 (741)
Q Consensus       571 ~~~~~~al~~~p----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  643 (741)
                      ..+|+.++..-+    .   -...+.++|.++.+++.+++|+..|++++.+.|.+ ... +..+|.+|..+|+++.|+..
T Consensus       434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~-~asig~iy~llgnld~Aid~  511 (611)
T KOG1173|consen  434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-AST-HASIGYIYHLLGNLDKAIDH  511 (611)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhH-HHHHHHHHHHhcChHHHHHH
Confidence            999999994322    1   24568999999999999999999999999999998 444 99999999999999999977


Q ss_pred             HHhhccCCc
Q 004622          644 TRLLKSTVS  652 (741)
Q Consensus       644 ~~~~~~~~~  652 (741)
                      |.......|
T Consensus       512 fhKaL~l~p  520 (611)
T KOG1173|consen  512 FHKALALKP  520 (611)
T ss_pred             HHHHHhcCC
Confidence            766544444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=8.9e-26  Score=229.79  Aligned_cols=283  Identities=16%  Similarity=0.146  Sum_probs=256.9

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (741)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~  448 (741)
                      .+..+....+....++..+|..|+..++|++|..+|+.+-+..|-..+..-....+++.+.+--+---..+..+..+|+.
T Consensus       341 ~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s  420 (638)
T KOG1126|consen  341 LFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS  420 (638)
T ss_pred             HHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC
Confidence            55666667777778889999999999999999999999999999877777777778887777666556667788899999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004622          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (741)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  528 (741)
                      |+.|..+|+||..+++.+.|++.|+++++++|....+|..+|.-+.....++.|..+|++++..+|.+..+|+.+|.+|.
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       529 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  608 (741)
                      ++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..+
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L  580 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL  580 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcc
Q 004622          609 SSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSF  653 (741)
Q Consensus       609 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  653 (741)
                      ++..++-|++  ..+++.+|.+|.+.|+.+.|+.-|......+|.
T Consensus       581 EeLk~~vP~e--s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  581 EELKELVPQE--SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHhCcch--HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            9999999997  444999999999999999999877777666663

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.94  E-value=9.2e-24  Score=197.09  Aligned_cols=336  Identities=15%  Similarity=0.108  Sum_probs=247.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      ..+.++|..|++..|+..|-.|++.+ ++..+++.||.+|+.+|+-..|+.++.++|++.|++..|+..+|.+++++|++
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel  122 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL  122 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence            45667789999999999999999999 78889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  199 (741)
                      ++|...|..+|..+|++.. ....-..+.....                                               
T Consensus       123 e~A~~DF~~vl~~~~s~~~-~~eaqskl~~~~e-----------------------------------------------  154 (504)
T KOG0624|consen  123 EQAEADFDQVLQHEPSNGL-VLEAQSKLALIQE-----------------------------------------------  154 (504)
T ss_pred             HHHHHHHHHHHhcCCCcch-hHHHHHHHHhHHH-----------------------------------------------
Confidence            9999999999999998766 2221111111110                                               


Q ss_pred             cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (741)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (741)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (504)
T KOG0624|consen  155 --------------------------------------------------------------------------------  154 (504)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (741)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~  359 (741)
                                               ...+......++..|++..|+....+.+++.|-+...+...+.||...|+...|+
T Consensus       155 -------------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI  209 (504)
T KOG0624|consen  155 -------------------------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI  209 (504)
T ss_pred             -------------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence                                     0111122334556788899999999999999999988888888888888888888


Q ss_pred             HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (741)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  439 (741)
                      .        .+..+.+....+.+.++.++..++..|+.+.++...++.++.+|++-..+-.    |-+.....+.++.. 
T Consensus       210 ~--------Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----YKklkKv~K~les~-  276 (504)
T KOG0624|consen  210 H--------DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----YKKLKKVVKSLESA-  276 (504)
T ss_pred             H--------HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----HHHHHHHHHHHHHH-
Confidence            8        5555666667778888888888888888888888888888888876443321    11112222222221 


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004622          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (741)
Q Consensus       440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  515 (741)
                                       .-....++|.++++..++.++.+|..+.    ....+..|+..-|++.+|+..+.+++..+|+
T Consensus       277 -----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  277 -----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             -----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence                             1223456677777777777777776433    3344556666777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 004622          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (741)
Q Consensus       516 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (741)
                      +..++...+.+|.....|+.|+..|+++.+.++++..+...+-.
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~  383 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER  383 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            77777777777777777777777777777777777665554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.2e-23  Score=199.39  Aligned_cols=295  Identities=16%  Similarity=0.111  Sum_probs=235.0

Q ss_pred             HHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004622          345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA  424 (741)
Q Consensus       345 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  424 (741)
                      +..++.+....+++...       ........-|.+.-.-...|.+.+.+.|+++|+..|+.+.+.+|-..+-.-....+
T Consensus       233 ~~~a~~el~q~~e~~~k-------~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~  305 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQK-------KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV  305 (559)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence            44455555555555553       22233334566666677788888888999999999999999888776666666666


Q ss_pred             HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622          425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (741)
Q Consensus       425 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (741)
                      ++-..+-.+-.-..+.+..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+.
T Consensus       306 LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  306 LYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             HHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence            66666555555555666777777778888888888888899999999999999999989999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (741)
Q Consensus       505 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  584 (741)
                      .|++|++++|.+..+|+.+|..|.-++.+.=|+-+|++++...|.++..|..||.+|.+.++.++|+++|.+++.....+
T Consensus       386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHhhhhc-------CCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhc
Q 004622          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM-------MPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLK  648 (741)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  648 (741)
                      ..++..+|.+|.++++.++|..+|++.++..       |.. ..+ ...++..+.+.+++++|-.+...+.
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t-~ka-~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET-IKA-RLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH-HHH-HHHHHHHHHhhcchHHHHHHHHHHh
Confidence            8889999999999999999999999888732       322 444 6678888899999999875444433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.94  E-value=2.5e-23  Score=200.87  Aligned_cols=285  Identities=14%  Similarity=0.112  Sum_probs=245.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la  456 (741)
                      ..+.-+..+..++.+|+++.|++++.-.-+.+... ..+-.++..+++.+|  ++..|..+...++..+..++.++.+.|
T Consensus       418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg  497 (840)
T KOG2003|consen  418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG  497 (840)
T ss_pred             hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC
Confidence            33455677888899999999999987665554443 344556666666643  788999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  536 (741)
                      ++-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+...+--++..+++.++.+|..+.+..+|
T Consensus       498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence            99999999999999999999999889999999999999999999999999999888888999999999999999999999


Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  616 (741)
                      ++++.++..+-|++|.++..||.+|-+.|+-.+|..++-......|.+.+....+|..|....-+++|+.+|+++--+.|
T Consensus       578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcc---cchhhHHHHhcCC
Q 004622          617 PHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSF---AGLTLMEILIPSS  666 (741)
Q Consensus       617 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g  666 (741)
                      +...|  ...++.|+.+.|+|..|...|+.+....|.   +...|.++.-..|
T Consensus       658 ~~~kw--qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  658 NQSKW--QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             cHHHH--HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            86333  466789999999999999999998887773   3444455544444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=3.2e-23  Score=220.22  Aligned_cols=298  Identities=15%  Similarity=0.057  Sum_probs=194.3

Q ss_pred             HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc----cH
Q 004622          306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI----SV  381 (741)
Q Consensus       306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~  381 (741)
                      ......|..+...|++++|+..|.+++..+|++..++..++.++...|++++|+..        +..+....+.    ..
T Consensus        36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~--------~~~~l~~~~~~~~~~~  107 (389)
T PRK11788         36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRI--------HQNLLSRPDLTREQRL  107 (389)
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHH--------HHHHhcCCCCCHHHHH
Confidence            34445677888888888888888888888888877777777777777777777773        3333222111    12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRG  456 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la  456 (741)
                      ..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|++.+.++++..|.+.     ..+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45666677777777777777777777776666667777777777777777777777777776665432     2344566


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHH
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKK  535 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~  535 (741)
                      .++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            666666777777777777766666666666666666666777777777777666666654 2445566666666666666


Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH--CCChHHHHHHHHHhh
Q 004622          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGS  612 (741)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al  612 (741)
                      |+..++++++..|+... +..++.++...|++++|+..++++++..|++......++.....  .|+..+|+..+++.+
T Consensus       268 A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~  345 (389)
T PRK11788        268 GLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV  345 (389)
T ss_pred             HHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence            66666666666665433 35666666666666666666666666666655443333332221  345666666655554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=8.8e-23  Score=198.35  Aligned_cols=358  Identities=13%  Similarity=-0.018  Sum_probs=304.8

Q ss_pred             CchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCC--cc
Q 004622          303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKS--IS  380 (741)
Q Consensus       303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~  380 (741)
                      ..+..+...|..+-+.|..+.|+..+..++...|-+..++..++.+.....               ........-|  ..
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e---------------~~~~l~~~l~~~~h  226 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE---------------ILSILVVGLPSDMH  226 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH---------------HHHHHHhcCcccch
Confidence            446677788999999999999999999999999999999988887763221               1122222222  33


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  459 (741)
                      .-.-+.++.++....+.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-..+-.-...+++
T Consensus       227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L  306 (559)
T KOG1155|consen  227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL  306 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence            334456677777777999999999999887 7888888899999999999999999999999999998777777777777


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (741)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  539 (741)
                      +-.++-.+-.-....+..++.-.++....+|+.|.-.++.++|+.+|+++++++|+...+|..+|.-|..+++...|+..
T Consensus       307 Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  307 YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence            77776555555666777888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch
Q 004622          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL  619 (741)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  619 (741)
                      |++|++++|.+..+|+.+|++|..++...=|+-+|+++....|.++..|..+|.+|.++++.++|+++|++++.....+ 
T Consensus       387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-  465 (559)
T KOG1155|consen  387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-  465 (559)
T ss_pred             HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987665 


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHhhccC-------Cc---ccchhhHHHHhcCCCchhHhhhHHH
Q 004622          620 IWNLTRWRNLCFNAWPFIRRRLLCTRLLKST-------VS---FAGLTLMEILIPSSRNIGAKDCIPR  677 (741)
Q Consensus       620 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~---~~~~~l~~~~~~~g~~~~A~~~~~~  677 (741)
                       ..++..+|.+|.++++..+|..+|......       .+   .+...|+..+...+++++|-.+-..
T Consensus       466 -~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  466 -GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             -hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence             344999999999999999999877664221       11   3555688888999999998665433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=5.6e-23  Score=218.29  Aligned_cols=301  Identities=15%  Similarity=0.054  Sum_probs=263.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRG  456 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la  456 (741)
                      ....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            44566779999999999999999999999999999999999999999999999999999998754332    35688999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIG  531 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~  531 (741)
                      .++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+.     ..+..+|.++...|
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  194 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG  194 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999887753     35667899999999


Q ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS  610 (741)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~  610 (741)
                      ++++|+..|+++++..|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998876 46688899999999999999999999


Q ss_pred             hhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcc--cchhhHHHHhc---CCCchhHhhhHHHHHhhhhh
Q 004622          611 GSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSF--AGLTLMEILIP---SSRNIGAKDCIPRMYVKRFT  684 (741)
Q Consensus       611 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~  684 (741)
                      ++...|+.  .. +..++.++...|++++|+..++......|.  ....+...+..   .|+..+++..++.+..+.+.
T Consensus       275 ~~~~~p~~--~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~  350 (389)
T PRK11788        275 ALEEYPGA--DL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK  350 (389)
T ss_pred             HHHhCCCc--hH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence            99999875  44 578999999999999999877765444452  22333434332   56899999999988876643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.93  E-value=4.7e-21  Score=212.94  Aligned_cols=436  Identities=10%  Similarity=-0.024  Sum_probs=326.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCh-hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHH--HHHHH
Q 004622           38 TARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK--GCAFS  114 (741)
Q Consensus        38 ~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~--g~~~~  114 (741)
                      ..+..+-..+.+|+|..|++.|.++++.+|+. .....++.++...|++++|+..|++++  +|.+...+..+  |.++.
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYR  113 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHH
Confidence            33466666899999999999999999999554 333488889999999999999999999  55555555555  88999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCC
Q 004622          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (741)
Q Consensus       115 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  194 (741)
                      .+|++++|+..|+++++.+|+++. +..++.......  .         +...++   ..+......+|           
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~-~l~gLa~~y~~~--~---------q~~eAl---~~l~~l~~~dp-----------  167 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPD-LISGMIMTQADA--G---------RGGVVL---KQATELAERDP-----------  167 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHhhc--C---------CHHHHH---HHHHHhcccCc-----------
Confidence            999999999999999999999988 554442222222  0         000000   00000000000           


Q ss_pred             CcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccc
Q 004622          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (741)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (741)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (822)
T PRK14574        168 --------------------------------------------------------------------------------  167 (822)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc
Q 004622          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (741)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  354 (741)
                                                  . ......++..+...++..+|+..|+++++.+|++..++..+..++...|-
T Consensus       168 ----------------------------~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        168 ----------------------------T-VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             ----------------------------c-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                        0 01112334444446777779999999999999999999999999988888


Q ss_pred             HHHHHHHHHHhHHHHHHHhhccCCccH--HHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCH-----
Q 004622          355 LKETSNEAKRNKKFCVTRISKSKSISV--DFRLSRGIAQVNEG------------KYASAISIFDQILKEDPMYP-----  415 (741)
Q Consensus       355 ~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~p~~~-----  415 (741)
                      ...|.+        ....-........  ......+....+.+            -.+.|+..++..+...+..|     
T Consensus       219 ~~~a~~--------l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~  290 (822)
T PRK14574        219 VEPALR--------LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQAD  290 (822)
T ss_pred             cHHHHH--------HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchH
Confidence            877777        3332221111111  22222232233222            23557777777777433322     


Q ss_pred             --HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCHHHH
Q 004622          416 --EALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADIL  486 (741)
Q Consensus       416 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~  486 (741)
                        .+..-.-.++...|++.+++..|+.+.... |-...+....|..|...+++++|+.+|..++.-.|      .+....
T Consensus       291 ~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~  370 (822)
T PRK14574        291 YQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDA  370 (822)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHH
Confidence              334455567778899999999999987554 33455778899999999999999999999988653      233345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622          487 HERGIVNFKFKDFNAAVEDLSACVKLDK---------------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (741)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  551 (741)
                      ..|...|...+++++|..++++..+..|               +...+...++.++...|++.+|.+.+++.+...|.++
T Consensus       371 ~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~  450 (822)
T PRK14574        371 DDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ  450 (822)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            7788899999999999999999988544               2246677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ..+..+|.++...|.+.+|...++.+..++|++..+...+|.++..++++.+|.......++..|++
T Consensus       451 ~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~  517 (822)
T PRK14574        451 NLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED  517 (822)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.93  E-value=4e-21  Score=213.55  Aligned_cols=441  Identities=12%  Similarity=-0.034  Sum_probs=319.8

Q ss_pred             HHHhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHH
Q 004622           10 RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHV   88 (741)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A   88 (741)
                      .+|.++...++..+.++++.++..+.+..  -.+.-+...|++++|+.++++++.-. .....+...|.+|..+|+|++|
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            46777778888888888888888754443  22222557899999999999999322 3333344457899999999999


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCc
Q 004622           89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNS  168 (741)
Q Consensus        89 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  168 (741)
                      +..++++++.+|+++.++..++.++...|+.++|+..++++...+|.+.. . ..+  .........         .   
T Consensus       122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~-l~l--ayL~~~~~~---------~---  185 (822)
T PRK14574        122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-Y-MTL--SYLNRATDR---------N---  185 (822)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-H-HHH--HHHHHhcch---------H---
Confidence            99999999999999999999999999999999999999999999999666 2 222  222210000         0   


Q ss_pred             cchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccc
Q 004622          169 MSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLR  248 (741)
Q Consensus       169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (741)
                      ...+......+.                                                                    
T Consensus       186 ~~AL~~~ekll~--------------------------------------------------------------------  197 (822)
T PRK14574        186 YDALQASSEAVR--------------------------------------------------------------------  197 (822)
T ss_pred             HHHHHHHHHHHH--------------------------------------------------------------------
Confidence            000000000111                                                                    


Q ss_pred             cccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHH
Q 004622          249 EVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY  328 (741)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~  328 (741)
                                                                         ..+...+....+-..+-+.|-...|.+..
T Consensus       198 ---------------------------------------------------~~P~n~e~~~~~~~~l~~~~~~~~a~~l~  226 (822)
T PRK14574        198 ---------------------------------------------------LAPTSEEVLKNHLEILQRNRIVEPALRLA  226 (822)
T ss_pred             ---------------------------------------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence                                                               11233455566677777788888888766


Q ss_pred             HHhhccCCCCch--hHHHHHHHHHchhcHHHH-H----HHHHHhHHHHHHHhhc---cCCcc----HHHHHHHHHHHHHc
Q 004622          329 SKSSISDNKSSD--STESRSKLSFKWDMLKET-S----NEAKRNKKFCVTRISK---SKSIS----VDFRLSRGIAQVNE  394 (741)
Q Consensus       329 ~~a~~~~p~~~~--~~~~la~~~~~~g~~~~a-~----~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~a~~~~~~  394 (741)
                      .+--........  .....+.-..+.+..... .    ....++... .+.+..   ..|..    ..+.+..-.++...
T Consensus       227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~-~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r  305 (822)
T PRK14574        227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD-YQNLLTRWGKDPEAQADYQRARIDRLGALLVR  305 (822)
T ss_pred             HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH-HHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence            653322211111  111222222222211110 0    111122211 112221   22322    33455666677889


Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCChHH
Q 004622          395 GKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVE  467 (741)
Q Consensus       395 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~  467 (741)
                      |++.+++..|+.+.... |--..+....|..|...+++++|+.+|..++...|      ........|...+...+++++
T Consensus       306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~  385 (822)
T PRK14574        306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK  385 (822)
T ss_pred             hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence            99999999999887654 33456888899999999999999999999988653      233335678888999999999


Q ss_pred             HHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622          468 AIQDLSKALEFEP---------------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (741)
Q Consensus       468 A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  532 (741)
                      |..++++..+..|               +-.+....++.++...|++.+|.+.+++.+...|.+..++..+|.++...|.
T Consensus       386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL  465 (822)
T ss_pred             HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence            9999999988555               2246778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHH
Q 004622          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY  588 (741)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  588 (741)
                      +.+|...++.+...+|++..+...+|.++..++++.+|......+++..|+++.+.
T Consensus       466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            99999999999999999999999999999999999999999999999999987543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.93  E-value=3.7e-23  Score=193.09  Aligned_cols=307  Identities=18%  Similarity=0.204  Sum_probs=277.3

Q ss_pred             chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622          304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF  383 (741)
Q Consensus       304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  383 (741)
                      ..+...++|..++..|++..|+..|..+++.+|++-.+++..+.+|..+|+...++.        .+.++....|....+
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~--------Dl~rVlelKpDF~~A  108 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQ--------DLSRVLELKPDFMAA  108 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchh--------hHHHHHhcCccHHHH
Confidence            455667899999999999999999999999999999999999999999999999999        788888899999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EAL------------IGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~------------~~la~~~~~~~~~~~A~~~~~~~l~~~~~~  448 (741)
                      .+..|.+++.+|.+++|+..|+.+++.+|++.   ++.            ......++-.|+...|+++....++..|.+
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd  188 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD  188 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence            99999999999999999999999999999652   222            233445566789999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------
Q 004622          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT-------  521 (741)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------  521 (741)
                      ...+...+.||...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-       
T Consensus       189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK  268 (504)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999854321       


Q ss_pred             -----HHHHHHHHcCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHH
Q 004622          522 -----YLGLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (741)
Q Consensus       522 -----~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  592 (741)
                           .-+......++|.++++..++.++.+|..+.    ....+..|+..-+++.+|+..+.+++.++|++..++...|
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA  348 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA  348 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence                 1234456788999999999999999998544    4456788899999999999999999999999999999999


Q ss_pred             HHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          593 LLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      .+|.....|+.|+..|+++.+.++++
T Consensus       349 eA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  349 EAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999988

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.92  E-value=7.4e-21  Score=199.92  Aligned_cols=362  Identities=13%  Similarity=0.019  Sum_probs=235.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      .+++-+|-.|++++|..++.++|.++ .++..|+.+|.+|.++|+.++|+..+-.|-.++|++.+-|..++....++|++
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence            56778899999999999999999999 78888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  199 (741)
                      +.|.-+|.+|++.+|.+....+..............+               +....+.+...| ...+..         
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~A---------------m~~f~~l~~~~p-~~d~er---------  278 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRA---------------METFLQLLQLDP-PVDIER---------  278 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHH---------------HHHHHHHHhhCC-chhHHH---------
Confidence            9999999999999999988443333333222211111               111111111111 000000         


Q ss_pred             cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (741)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (741)
                                          +..........+.......++++.+..   ...                           
T Consensus       279 --------------------~~d~i~~~~~~~~~~~~~e~a~~~le~---~~s---------------------------  308 (895)
T KOG2076|consen  279 --------------------IEDLIRRVAHYFITHNERERAAKALEG---ALS---------------------------  308 (895)
T ss_pred             --------------------HHHHHHHHHHHHHHhhHHHHHHHHHHH---HHh---------------------------
Confidence                                000000000000000000000000000   000                           


Q ss_pred             ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhcc------------------------C
Q 004622          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS------------------------D  335 (741)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------------~  335 (741)
                                        ........+....+...+.+...++.|+.........                        .
T Consensus       309 ------------------~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~  370 (895)
T KOG2076|consen  309 ------------------KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV  370 (895)
T ss_pred             ------------------hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence                              0000011223335566666667777776666554430                        1


Q ss_pred             CCCch--hHH-HHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622          336 NKSSD--STE-SRSKLSFKWDMLKETSNEAKRNKKFCVTRISK---SKSISVDFRLSRGIAQVNEGKYASAISIFDQILK  409 (741)
Q Consensus       336 p~~~~--~~~-~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  409 (741)
                      |++..  ... .+..++......+....        ....+..   .....++.++.++..+...|++.+|+.+|..+..
T Consensus       371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~--------ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~  442 (895)
T KOG2076|consen  371 GKELSYDLRVIRLMICLVHLKERELLEA--------LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN  442 (895)
T ss_pred             CCCCCccchhHhHhhhhhcccccchHHH--------HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence            11111  112 22222323222221111        1111111   1345668899999999999999999999999988


Q ss_pred             hCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 004622          410 EDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------  482 (741)
Q Consensus       410 ~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------  482 (741)
                      ..+. +..+|+.+|.||..+|.+++|+++|.+++...|++.++...++.++..+|+.++|.+.+.....-++.+      
T Consensus       443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~  522 (895)
T KOG2076|consen  443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW  522 (895)
T ss_pred             CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence            7654 367999999999999999999999999999999999999999999999999999999999887544332      


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHH
Q 004622          483 ---ADILHERGIVNFKFKDFNAAV  503 (741)
Q Consensus       483 ---~~~~~~la~~~~~~~~~~~A~  503 (741)
                         .........++.+.|+.++=+
T Consensus       523 ~~e~ri~~~r~d~l~~~gk~E~fi  546 (895)
T KOG2076|consen  523 EPERRILAHRCDILFQVGKREEFI  546 (895)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHH
Confidence               235566777777777776633

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.9e-22  Score=198.44  Aligned_cols=382  Identities=17%  Similarity=0.120  Sum_probs=262.8

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 004622           74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (741)
Q Consensus        74 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  153 (741)
                      ..+.+.+..|+|+.|+..|..++.++|.|--.|..+..+|..+|+|++|+..-.+..++.|+=+.               
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k---------------   71 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK---------------   71 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh---------------
Confidence            45778889999999999999999999999889999999999999999999999998888876333               


Q ss_pred             hhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCC
Q 004622          154 KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSS  233 (741)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (741)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (539)
T KOG0548|consen   72 --------------------------------------------------------------------------------   71 (539)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhh
Q 004622          234 VPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSS  313 (741)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~  313 (741)
                                                                                               .+..+|.
T Consensus        72 -------------------------------------------------------------------------gy~r~Ga   78 (539)
T KOG0548|consen   72 -------------------------------------------------------------------------GYSRKGA   78 (539)
T ss_pred             -------------------------------------------------------------------------HHHHhHH
Confidence                                                                                     2345678


Q ss_pred             HHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHH-------------HhHHHHH---HHhhccC
Q 004622          314 DSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK-------------RNKKFCV---TRISKSK  377 (741)
Q Consensus       314 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~-------------~~~~~~~---~~~~~~~  377 (741)
                      .++-.|+|++|+..|.+.++.+|++...+..++.++.......+......             ...+-++   .......
T Consensus        79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~  158 (539)
T KOG0548|consen   79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN  158 (539)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence            88889999999999999999999999999999988832211000000000             0000000   0000111


Q ss_pred             CccH--------------------------------------------------------------HHHHHHHHHHHHcC
Q 004622          378 SISV--------------------------------------------------------------DFRLSRGIAQVNEG  395 (741)
Q Consensus       378 ~~~~--------------------------------------------------------------~~~~~~a~~~~~~g  395 (741)
                      |.+.                                                              .-.-.+|...+...
T Consensus       159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk  238 (539)
T KOG0548|consen  159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK  238 (539)
T ss_pred             cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            1111                                                              12234555555555


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCChHHH
Q 004622          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEA  468 (741)
Q Consensus       396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~la~~~~~~~~~~~A  468 (741)
                      ++..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++......       .+...+|..+...++++.|
T Consensus       239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a  317 (539)
T KOG0548|consen  239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA  317 (539)
T ss_pred             hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence            5555555555555555 4455555555555555555555555555444332211       1222334444445555555


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (741)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  548 (741)
                      +.+|.+++.-..+        ..+.-+....+++++......-.+|.-..--..-|..++..|+|..|+..|.+++..+|
T Consensus       318 i~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P  389 (539)
T KOG0548|consen  318 IKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP  389 (539)
T ss_pred             HHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence            5555554443322        23333344445555555544445555555566679999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 004622          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRN  628 (741)
Q Consensus       549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la  628 (741)
                      +++..|.+.|.+|...|.+..|+...+.+++++|+....|...|.++..+.+|++|++.|+++++.+|++ .+. ...+.
T Consensus       390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~-~~~~~  467 (539)
T KOG0548|consen  390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEA-IDGYR  467 (539)
T ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHH-HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987 444 66777


Q ss_pred             HHHHhC
Q 004622          629 LCFNAW  634 (741)
Q Consensus       629 ~~~~~~  634 (741)
                      +|...+
T Consensus       468 rc~~a~  473 (539)
T KOG0548|consen  468 RCVEAQ  473 (539)
T ss_pred             HHHHHh
Confidence            777653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.91  E-value=3.9e-20  Score=186.85  Aligned_cols=335  Identities=12%  Similarity=0.006  Sum_probs=284.1

Q ss_pred             chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622          304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF  383 (741)
Q Consensus       304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  383 (741)
                      ....+..-+..+-+.+-++-|...|..++...|.....+...+..--..|..++-..        .+.++....|.....
T Consensus       515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A--------llqkav~~~pkae~l  586 (913)
T KOG0495|consen  515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA--------LLQKAVEQCPKAEIL  586 (913)
T ss_pred             hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH--------HHHHHHHhCCcchhH
Confidence            344556667788888999999999999999999999999888888777787776666        777777888888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      |+..+..+...|+...|..++.++++.+|++.+.|+....+.....+++.|...|.++....| ...+|+.-+.....++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLD  665 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999988766 4678888899999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  543 (741)
                      +.++|++.++++++.+|.....|..+|+++.++++.+.|...|...++..|..+..|..++.+-...|+.-.|..+++++
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH------------------------------HHHHHH
Q 004622          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA------------------------------YHLRGL  593 (741)
Q Consensus       544 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------~~~la~  593 (741)
                      .-.+|.+...|.....+-.+.|+.+.|.....++++..|++...                              +...|.
T Consensus       746 rlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~  825 (913)
T KOG0495|consen  746 RLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK  825 (913)
T ss_pred             HhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence            99999999999999999999999999999999999988776443                              444555


Q ss_pred             HHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc
Q 004622          594 LLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS  649 (741)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  649 (741)
                      ++....++++|.++|.+++..+|++ ... |.+.-..+...|.-++-...+.....
T Consensus       826 lfw~e~k~~kar~Wf~Ravk~d~d~-GD~-wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  826 LFWSEKKIEKAREWFERAVKKDPDN-GDA-WAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCcc-chH-HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            5666666666666666666666655 333 44555555555554444444444333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.90  E-value=1.4e-19  Score=205.48  Aligned_cols=453  Identities=11%  Similarity=-0.038  Sum_probs=313.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc---CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHc
Q 004622           42 ELAKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSAL  116 (741)
Q Consensus        42 ~~~~~~~~g~~~~Ai~~~~~al~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~  116 (741)
                      .+..+...|++++|++.|.......   ++...|..+..++.+.++++.|...+..++..  .|+ ...+..+..+|.+.
T Consensus        93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~  171 (697)
T PLN03081         93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKC  171 (697)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcC
Confidence            3555788999999999999987643   56777888888999999999999999888764  464 66888889999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCc
Q 004622          117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD  196 (741)
Q Consensus       117 g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  196 (741)
                      |++++|...|++..+  |+..                                                           
T Consensus       172 g~~~~A~~lf~~m~~--~~~~-----------------------------------------------------------  190 (697)
T PLN03081        172 GMLIDARRLFDEMPE--RNLA-----------------------------------------------------------  190 (697)
T ss_pred             CCHHHHHHHHhcCCC--CCee-----------------------------------------------------------
Confidence            999999999887521  1111                                                           


Q ss_pred             ccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccC
Q 004622          197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ  276 (741)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (741)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (697)
T PLN03081        191 --------------------------------------------------------------------------------  190 (697)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCC-CchhHHHHHHHHHchhcH
Q 004622          277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNK-SSDSTESRSKLSFKWDML  355 (741)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~  355 (741)
                                                    .+..+...+.+.|++++|+..|+++.+..+. +...+..+...+...|..
T Consensus       191 ------------------------------t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        191 ------------------------------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             ------------------------------eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence                                          1122344456667778888888887765432 334555556666666666


Q ss_pred             HHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 004622          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI  435 (741)
Q Consensus       356 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  435 (741)
                      ..+...       ...........+..++..+...|.+.|++++|...|++.   .+.+..+|..+...|.+.|++++|+
T Consensus       241 ~~~~~l-------~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~  310 (697)
T PLN03081        241 RAGQQL-------HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEAL  310 (697)
T ss_pred             HHHHHH-------HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHH
Confidence            655442       111112222334455666777777888888888887765   3445677778888888888888888


Q ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622          436 SDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (741)
Q Consensus       436 ~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (741)
                      +.|++..+.. .-+...+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+  
T Consensus       311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--  388 (697)
T PLN03081        311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--  388 (697)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence            8887776542 2244567777777778888888888887777765 44666777778888888888888888877643  


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--ccHHHHHH
Q 004622          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHL  590 (741)
Q Consensus       514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~  590 (741)
                       .+...|..+...|.+.|+.++|+..|+++.+.. ..+...+..+...+...|..++|..+|+.+.+..+  .+...|..
T Consensus       389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~  467 (697)
T PLN03081        389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC  467 (697)
T ss_pred             -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence             345677777778888888888888888776643 22355666777777778888888888887765322  22456777


Q ss_pred             HHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCC
Q 004622          591 RGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSR  667 (741)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~  667 (741)
                      +..++.+.|++++|.+.+++.- ..|+.  .. |..+...+...|+++.|....+.+....|   ..+..|+..|...|+
T Consensus       468 li~~l~r~G~~~eA~~~~~~~~-~~p~~--~~-~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        468 MIELLGREGLLDEAYAMIRRAP-FKPTV--NM-WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             HHHHHHhcCCHHHHHHHHHHCC-CCCCH--HH-HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence            7778888888888887777642 33332  33 66777777778888877765555433333   466777778888888


Q ss_pred             chhHhhhHHHHHhhhh
Q 004622          668 NIGAKDCIPRMYVKRF  683 (741)
Q Consensus       668 ~~~A~~~~~~~~~~~~  683 (741)
                      +++|...++.+-...+
T Consensus       544 ~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        544 QAEAAKVVETLKRKGL  559 (697)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            8888888877766554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.89  E-value=5.6e-20  Score=193.37  Aligned_cols=368  Identities=11%  Similarity=0.016  Sum_probs=291.4

Q ss_pred             hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHH
Q 004622          305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR  384 (741)
Q Consensus       305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (741)
                      .......++.++..|++++|+.++.+++..+|.++.++..+|.+|-..|+.+++..        +.-.+.-.+|.+.+.|
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~--------~~llAAHL~p~d~e~W  210 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALN--------FWLLAAHLNPKDYELW  210 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHH--------HHHHHHhcCCCChHHH
Confidence            34555668889999999999999999999999999999999999999999999999        6666777888889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHH
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRGQAR  459 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~  459 (741)
                      ..++.....+|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|...     ......+..+
T Consensus       211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~  290 (895)
T KOG2076|consen  211 KRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF  290 (895)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999321     2334557778


Q ss_pred             HHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------
Q 004622          460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE--------------------  515 (741)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~--------------------  515 (741)
                      ...++-+.|++.++.++...  -...+.+..++.+++....++.|..........  .++                    
T Consensus       291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~  370 (895)
T KOG2076|consen  291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV  370 (895)
T ss_pred             HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence            88888899999999999843  223456778899999999999998887765541  000                    


Q ss_pred             ------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc-ccHH
Q 004622          516 ------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSK  586 (741)
Q Consensus       516 ------~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~  586 (741)
                            +..+ ...++.+....++..+++..+..--...| +.+..+..++.++...|++.+|+.+|..+....+ ++..
T Consensus       371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~  450 (895)
T KOG2076|consen  371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF  450 (895)
T ss_pred             CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence                  1122 44445555555555566555543333224 3477889999999999999999999999887766 3467


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCC----c--------cc
Q 004622          587 AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTV----S--------FA  654 (741)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~--------~~  654 (741)
                      +|+.+|.||..+|.+++|++.|++++...|.+ ..+ ...++.++.++|+.++|++....+...+    +        ..
T Consensus       451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~-~D~-Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri  528 (895)
T KOG2076|consen  451 VWYKLARCYMELGEYEEAIEFYEKVLILAPDN-LDA-RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI  528 (895)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc-hhh-hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence            89999999999999999999999999999998 555 8899999999999999996555432122    1        12


Q ss_pred             chhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622          655 GLTLMEILIPSSRNIGAKDCIPRMYVKR  682 (741)
Q Consensus       655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (741)
                      ......++...|+.++=+..--.++..+
T Consensus       529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~  556 (895)
T KOG2076|consen  529 LAHRCDILFQVGKREEFINTASTLVDDF  556 (895)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3445577788888777555554444444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.89  E-value=1.4e-19  Score=205.37  Aligned_cols=450  Identities=9%  Similarity=-0.072  Sum_probs=346.0

Q ss_pred             HhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CChhhHHHHHHHHHhhhcHHHHH
Q 004622           12 RLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVI   89 (741)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~   89 (741)
                      +.+...+++.....+.+-.++.|+...--..+..+...++++.|.+.+...+...  ++...+..+..+|.+.|++++|.
T Consensus        99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  178 (697)
T PLN03081         99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR  178 (697)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence            3344445544444443322222333333455556778999999999999998866  78888888999999999999999


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCcc
Q 004622           90 RDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSM  169 (741)
Q Consensus        90 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  169 (741)
                      ..|++...  | +...|..+...|.+.|++++|+..|++.+...+........                           
T Consensus       179 ~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~---------------------------  228 (697)
T PLN03081        179 RLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV---------------------------  228 (697)
T ss_pred             HHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH---------------------------
Confidence            99998754  4 44578999999999999999999999987655433220000                           


Q ss_pred             chhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCccccc
Q 004622          170 SSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLRE  249 (741)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (741)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (697)
T PLN03081        229 --------------------------------------------------------------------------------  228 (697)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHH
Q 004622          250 VSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYS  329 (741)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  329 (741)
                                                                                  .+-..+.+.|+...+.+.+.
T Consensus       229 ------------------------------------------------------------~ll~a~~~~~~~~~~~~l~~  248 (697)
T PLN03081        229 ------------------------------------------------------------VMLRASAGLGSARAGQQLHC  248 (697)
T ss_pred             ------------------------------------------------------------HHHHHHhcCCcHHHHHHHHH
Confidence                                                                        00011112233444555555


Q ss_pred             HhhccC-CCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622          330 KSSISD-NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL  408 (741)
Q Consensus       330 ~a~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al  408 (741)
                      .+.+.. ..+...++.+...|.+.|+.++|..        .+..+.   +.+...|..+...|...|++++|+.+|++..
T Consensus       249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~--------vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~  317 (697)
T PLN03081        249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARC--------VFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMR  317 (697)
T ss_pred             HHHHhCCCccceeHHHHHHHHHHCCCHHHHHH--------HHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            444432 2366677888888999999988888        444443   3456788889999999999999999999987


Q ss_pred             HhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 004622          409 KED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL  486 (741)
Q Consensus       409 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  486 (741)
                      ... ..+..++..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|+++.+   .+...|
T Consensus       318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~  394 (697)
T PLN03081        318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISW  394 (697)
T ss_pred             HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeH
Confidence            643 2247788899999999999999999999998875 55667888999999999999999999998754   366789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH
Q 004622          487 HERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD  563 (741)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~  563 (741)
                      ..+...|.+.|+.++|++.|++..+.. .-+..++..+...+...|..++|..+|+.+.+..+  .+...|..+..++.+
T Consensus       395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r  474 (697)
T PLN03081        395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR  474 (697)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence            999999999999999999999988753 23456677888889999999999999999986432  235678899999999


Q ss_pred             cCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHH
Q 004622          564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLC  643 (741)
Q Consensus       564 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  643 (741)
                      .|+.++|.+.+++. ...|+ ..+|..+...+...|+.+.|...+++.+.+.|++ ... |..++.+|...|++++|...
T Consensus       475 ~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~-y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        475 EGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNN-YVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             cCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-Ccc-hHHHHHHHHhCCCHHHHHHH
Confidence            99999999998764 23443 6779999999999999999999999999999987 455 88999999999999999988


Q ss_pred             HHhhcc
Q 004622          644 TRLLKS  649 (741)
Q Consensus       644 ~~~~~~  649 (741)
                      ++.+..
T Consensus       551 ~~~m~~  556 (697)
T PLN03081        551 VETLKR  556 (697)
T ss_pred             HHHHHH
Confidence            877643

>PLN03077 Protein ECB2; Provisional

Probab=99.89  E-value=4.4e-19  Score=206.47  Aligned_cols=486  Identities=10%  Similarity=-0.062  Sum_probs=299.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH
Q 004622           38 TARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSA  115 (741)
Q Consensus        38 ~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~  115 (741)
                      ..-..+.-|.+.|+++.|...|.+..+  ++...|..+...|.+.|++++|+..+++....  .|+.. .+..+..++..
T Consensus       224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~-ty~~ll~a~~~  300 (857)
T PLN03077        224 VVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM-TITSVISACEL  300 (857)
T ss_pred             hHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Confidence            333455667888888888888887532  55566777888888888888888888887664  46543 56666777788


Q ss_pred             cCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCC
Q 004622          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (741)
Q Consensus       116 ~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  195 (741)
                      .|+.+.|.+.+..+.+..-.........+.......           +...                 .....+.     
T Consensus       301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-----------g~~~-----------------~A~~vf~-----  347 (857)
T PLN03077        301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL-----------GSWG-----------------EAEKVFS-----  347 (857)
T ss_pred             cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc-----------CCHH-----------------HHHHHHh-----
Confidence            888888888888887765322221111111111111           0000                 0000000     


Q ss_pred             cccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCccccccc
Q 004622          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR  275 (741)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (741)
                                                 .+   .                                               
T Consensus       348 ---------------------------~m---~-----------------------------------------------  350 (857)
T PLN03077        348 ---------------------------RM---E-----------------------------------------------  350 (857)
T ss_pred             ---------------------------hC---C-----------------------------------------------
Confidence                                       00   0                                               


Q ss_pred             CCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhcc--CCCCchhHHHHHHHHHchh
Q 004622          276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS--DNKSSDSTESRSKLSFKWD  353 (741)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g  353 (741)
                                                ......+..+...+.+.|++++|+..|++....  .|+.. .+..+...+...|
T Consensus       351 --------------------------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g  403 (857)
T PLN03077        351 --------------------------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLG  403 (857)
T ss_pred             --------------------------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccc
Confidence                                      000112344556677777888888888876543  34443 3444444666777


Q ss_pred             cHHHHHHHHHHhHHHHHHHhh-ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 004622          354 MLKETSNEAKRNKKFCVTRIS-KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE  432 (741)
Q Consensus       354 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  432 (741)
                      +++.+...        ...+. .....+..++..+...|.+.|++++|.+.|++..+   .+..+|..+...|.+.|+.+
T Consensus       404 ~~~~a~~l--------~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~  472 (857)
T PLN03077        404 DLDVGVKL--------HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCF  472 (857)
T ss_pred             hHHHHHHH--------HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHH
Confidence            77777763        22222 22334455666777777788888888888776532   34567777777777888888


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (741)
Q Consensus       433 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (741)
                      +|+..|++.....+.+...+..+-..+...|+.+.+.+.+..+++... .+..+...+...|.+.|+.++|...|+..  
T Consensus       473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--  550 (857)
T PLN03077        473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--  550 (857)
T ss_pred             HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence            888888777654444445555555566677777777777777666542 23445566667777777777777777664  


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CcccHH
Q 004622          512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DKRFSK  586 (741)
Q Consensus       512 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~  586 (741)
                        +.+...|..+...|...|+.++|+..|++..+.  .|+ ...+..+...+...|..++|..+|+.+...   .|+ ..
T Consensus       551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~  626 (857)
T PLN03077        551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LK  626 (857)
T ss_pred             --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hH
Confidence              456667777777777777777777777776653  233 344555556677777777777777776633   233 45


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh---ccCCcccchhhHHHHh
Q 004622          587 AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL---KSTVSFAGLTLMEILI  663 (741)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~  663 (741)
                      .|..+..++.+.|++++|.+.+++. ...|+.  .. |..+-..+...|+.+.+....+.+   .+..+..+..|+.+|.
T Consensus       627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~--~~-~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya  702 (857)
T PLN03077        627 HYACVVDLLGRAGKLTEAYNFINKM-PITPDP--AV-WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA  702 (857)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH--HH-HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence            6777777777777777777777765 234442  22 445555556666666665433332   3333345666677777


Q ss_pred             cCCCchhHhhhHHHHHhhhhh
Q 004622          664 PSSRNIGAKDCIPRMYVKRFT  684 (741)
Q Consensus       664 ~~g~~~~A~~~~~~~~~~~~~  684 (741)
                      ..|++++|......+-...++
T Consensus       703 ~~g~~~~a~~vr~~M~~~g~~  723 (857)
T PLN03077        703 DAGKWDEVARVRKTMRENGLT  723 (857)
T ss_pred             HCCChHHHHHHHHHHHHcCCC
Confidence            777777777777666555433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.3e-19  Score=171.99  Aligned_cols=287  Identities=14%  Similarity=0.093  Sum_probs=180.5

Q ss_pred             hHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHH
Q 004622          323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAIS  402 (741)
Q Consensus       323 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  402 (741)
                      -+..++-+-...-|++...+..++++++..|++++++.        .++.....+|......-..|..+...|+++.-..
T Consensus       216 ~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~--------~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  216 SQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED--------IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             hhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH--------HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence            34444444455555666666666666666666666666        4455555555555555555666666666666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (741)
Q Consensus       403 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (741)
                      +-...+..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|.+
T Consensus       288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence            66666666555555566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 004622          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG-LALS-SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (741)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  560 (741)
                      .+.|..+-.+|...|++.+|.-.-+.+++..|.+..++..+| .+++ .-.--++|...+++++.+.|....+-..++.+
T Consensus       368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL  447 (564)
T KOG1174|consen  368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL  447 (564)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence            666666666666666666666666666666666666666554 2222 22334566666666666666666666666666


Q ss_pred             HHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       561 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      +...|.+++++..+++.+...|+ ...+..+|.++...+.+++|.++|..++.++|.+
T Consensus       448 ~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  448 CQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             HHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            66666666666666666666665 4456666666666666666666666666666665

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=3.9e-20  Score=171.96  Aligned_cols=233  Identities=14%  Similarity=0.133  Sum_probs=221.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  464 (741)
                      ..+|.+|+..|-+.+|.+.++..++..|. ++.+..++.+|.+..++..|+..+...++..|.+...+...+.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            57899999999999999999999998886 89999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (741)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  544 (741)
                      .++|.++|+.+++.+|.+.++.-.+|..|+.-++.+-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCc---ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          545 QLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       545 ~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ....   .-.++|+++|.+....|++.-|..+|+-++..+|++.+++.++|.+-.+.|+.++|..++..+-...|.-
T Consensus       386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            8753   2367999999999999999999999999999999999999999999999999999999999999998875

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.88  E-value=1.7e-17  Score=189.96  Aligned_cols=496  Identities=12%  Similarity=-0.030  Sum_probs=308.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc---CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  117 (741)
                      ...+++++.|++++|++.|......+   .+...+...-..+.+.|..++|...++....  | +...|..+-.++...|
T Consensus       375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g  451 (1060)
T PLN03218        375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQ  451 (1060)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCc
Confidence            44566778899999999999987755   3333344455677788999999988877654  5 3457778888889999


Q ss_pred             CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcc
Q 004622          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI  197 (741)
Q Consensus       118 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  197 (741)
                      ++++|...|+.+.+..+.........+.......           +...                 .....+.       
T Consensus       452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-----------G~vd-----------------~A~~vf~-------  496 (1060)
T PLN03218        452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-----------GKVD-----------------AMFEVFH-------  496 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----------cCHH-----------------HHHHHHH-------
Confidence            9999999999988776443221111111111000           0000                 0000000       


Q ss_pred             cccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCC
Q 004622          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (741)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (741)
                                               .   ..                                                 
T Consensus       497 -------------------------e---M~-------------------------------------------------  499 (1060)
T PLN03218        497 -------------------------E---MV-------------------------------------------------  499 (1060)
T ss_pred             -------------------------H---HH-------------------------------------------------
Confidence                                     0   00                                                 


Q ss_pred             CCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCC-CCchhHHHHHHHHHchhcHH
Q 004622          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDN-KSSDSTESRSKLSFKWDMLK  356 (741)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~  356 (741)
                                          ..........+..+...+.+.|++++|+..|..+....- .+...++.+...+.+.|+.+
T Consensus       500 --------------------~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d  559 (1060)
T PLN03218        500 --------------------NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD  559 (1060)
T ss_pred             --------------------HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence                                000001223555677777778888888888877765431 24566777777777888877


Q ss_pred             HHHHHHHHhHHHHHHHhhc---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHH
Q 004622          357 ETSNEAKRNKKFCVTRISK---SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELE  432 (741)
Q Consensus       357 ~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  432 (741)
                      +|..        .+..+..   .-..+...+..+...|...|++++|.++|+.+.+.+ +.+...|..+...|.+.|+++
T Consensus       560 eA~~--------lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d  631 (1060)
T PLN03218        560 RAFD--------VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD  631 (1060)
T ss_pred             HHHH--------HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence            7777        4444432   122345566667777778888888888888777765 345677777777888888888


Q ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          433 AAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (741)
Q Consensus       433 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (741)
                      +|...|.+..+.  .|+ ...+..+...+...|++++|.+.+..+.+.. +.+...+..+...|.+.|++++|..+|+++
T Consensus       632 eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        632 FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            888888777765  343 4567777777778888888888888777654 335667777788888888888888888777


Q ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CcccH
Q 004622          510 VKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFS  585 (741)
Q Consensus       510 l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~  585 (741)
                      .... ..+...|..+...|.+.|++++|++.|+++.... ..+...|..+...+.+.|++++|..++.++++.  .|+ .
T Consensus       711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~  789 (1060)
T PLN03218        711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-L  789 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-H
Confidence            6531 2345667777778888888888888888776542 223556666677777888888888888877754  333 3


Q ss_pred             HHHHHHHHHHH----HC-------------------CChHHHHHHHHHhhhhc--CCchHHHHHHHHHHHHHhCCCHHHH
Q 004622          586 KAYHLRGLLLH----GL-------------------GQHKKAIKDLSSGSRTM--MPHLIWNLTRWRNLCFNAWPFIRRR  640 (741)
Q Consensus       586 ~~~~~la~~~~----~~-------------------g~~~~A~~~~~~al~~~--~~~~~~~~~~~la~~~~~~g~~~~A  640 (741)
                      ..+..+-.++.    +.                   +..+.|+.+|+++++..  |+.  .. +..+-.|+...+....+
T Consensus       790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~--~T-~~~vL~cl~~~~~~~~~  866 (1060)
T PLN03218        790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM--EV-LSQVLGCLQLPHDATLR  866 (1060)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH--HH-HHHHHHHhcccccHHHH
Confidence            33333322211    11                   11345667777776543  332  33 33333556666667666


Q ss_pred             HHHHHhhccC--Cc--ccchhhHHHHhcCCCc-hhHhhhHHHHHhhhhhccc
Q 004622          641 LLCTRLLKST--VS--FAGLTLMEILIPSSRN-IGAKDCIPRMYVKRFTDSL  687 (741)
Q Consensus       641 ~~~~~~~~~~--~~--~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~  687 (741)
                      ...+..+...  .+  ..+..|...+   |++ .+|...|+.+....+....
T Consensus       867 ~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~  915 (1060)
T PLN03218        867 NRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV  915 (1060)
T ss_pred             HHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence            6555543222  22  2344444433   333 4688888777766544333

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.88  E-value=4.5e-17  Score=186.54  Aligned_cols=490  Identities=10%  Similarity=-0.025  Sum_probs=348.1

Q ss_pred             hHHHHHhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHH
Q 004622            7 LDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHK   86 (741)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~   86 (741)
                      +....+.....+++..++++.+-+-+.+..+.....+.-+.+.|....|...|.....  ++...|..+-.++.+.|+++
T Consensus       377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e  454 (1060)
T PLN03218        377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDID  454 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHH
Confidence            3344455666777777777766554444444444445556788999999998887654  77777888888999999999


Q ss_pred             HHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhhhccccccC
Q 004622           87 HVIRDCDKALQLDP-TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH-QSADLKQFLELEELLTAAKQDRSVTCEYD  164 (741)
Q Consensus        87 ~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  164 (741)
                      +|...++.+.+... -+...+..+..+|.+.|+.++|...|+++.+.... +.. ....+.......           +.
T Consensus       455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv-TynaLI~gy~k~-----------G~  522 (1060)
T PLN03218        455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH-TFGALIDGCARA-----------GQ  522 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHC-----------cC
Confidence            99999999988653 24567888999999999999999999999876543 222 222221111110           00


Q ss_pred             cCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccC
Q 004622          165 VSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHIN  244 (741)
Q Consensus       165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (741)
                      ..                 .....+.                                .   ..                
T Consensus       523 ~e-----------------eAl~lf~--------------------------------~---M~----------------  534 (1060)
T PLN03218        523 VA-----------------KAFGAYG--------------------------------I---MR----------------  534 (1060)
T ss_pred             HH-----------------HHHHHHH--------------------------------H---HH----------------
Confidence            00                 0000000                                0   00                


Q ss_pred             cccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhH
Q 004622          245 GKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTN  324 (741)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A  324 (741)
                                                                           .....-....+..+-..+.+.|++++|
T Consensus       535 -----------------------------------------------------~~Gv~PD~vTYnsLI~a~~k~G~~deA  561 (1060)
T PLN03218        535 -----------------------------------------------------SKNVKPDRVVFNALISACGQSGAVDRA  561 (1060)
T ss_pred             -----------------------------------------------------HcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence                                                                 000011234677788999999999999


Q ss_pred             HHHHHHhhccC---CCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhcc-CCccHHHHHHHHHHHHHcCCHHHH
Q 004622          325 SESYSKSSISD---NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKS-KSISVDFRLSRGIAQVNEGKYASA  400 (741)
Q Consensus       325 ~~~~~~a~~~~---p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A  400 (741)
                      .+.|.++....   ..+...+..+...|.+.|++++|..        .+..+... -+.+...|..+...|.+.|++++|
T Consensus       562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e--------lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA  633 (1060)
T PLN03218        562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE--------VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA  633 (1060)
T ss_pred             HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence            99999997631   2345678888999999999999999        55555543 366778899999999999999999


Q ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622          401 ISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (741)
Q Consensus       401 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (741)
                      +.+|+++...  .|+ ...|..+...+.+.|++++|.+.+..+.+.. +.+...+..+...|...|++++|...|+++..
T Consensus       634 l~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        634 LSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9999999876  454 7889999999999999999999999998864 34677899999999999999999999999876


Q ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHH
Q 004622          478 FE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEA  553 (741)
Q Consensus       478 ~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~  553 (741)
                      .. ..+...|..+...|.+.|++++|+++|+++.... ..+...+..+...+.+.|++++|..++.++.+..  |+ ...
T Consensus       713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~t  791 (1060)
T PLN03218        713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVM  791 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHH
Confidence            42 2367889999999999999999999999987652 3356677778889999999999999999998864  43 334


Q ss_pred             HHHHHHHHH----Hc-------------------CChHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622          554 WGHLTQFYQ----DL-------------------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       554 ~~~la~~~~----~~-------------------~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~  608 (741)
                      +..+..++.    +.                   +..+.|+.+|++++..  .|+ ...+..+-.++...+....+...+
T Consensus       792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~  870 (1060)
T PLN03218        792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLI  870 (1060)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHH
Confidence            443332211    11                   1235688888888864  455 444554446777888888887777


Q ss_pred             HHhhhh-cCCchHHHHHHHHHHHHHhCCCH-HHHHHHHHhh
Q 004622          609 SSGSRT-MMPHLIWNLTRWRNLCFNAWPFI-RRRLLCTRLL  647 (741)
Q Consensus       609 ~~al~~-~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~  647 (741)
                      +..... .+.+  ...|..+-..+   |++ ++|+..+...
T Consensus       871 ~~m~~~~~~~~--~~~y~~Li~g~---~~~~~~A~~l~~em  906 (1060)
T PLN03218        871 ENLGISADSQK--QSNLSTLVDGF---GEYDPRAFSLLEEA  906 (1060)
T ss_pred             HHhccCCCCcc--hhhhHHHHHhh---ccChHHHHHHHHHH
Confidence            664322 2222  22244444433   443 5788666654

>PLN03077 Protein ECB2; Provisional

Probab=99.88  E-value=1.8e-18  Score=201.35  Aligned_cols=355  Identities=9%  Similarity=-0.059  Sum_probs=285.9

Q ss_pred             HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc-cCCccHHHH
Q 004622          306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK-SKSISVDFR  384 (741)
Q Consensus       306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~  384 (741)
                      ..+..+...+.+.|++++|.+.|++...   .+...++.+...|.+.|++++|...        +..+.. .-..+...+
T Consensus       324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~l--------f~~M~~~g~~Pd~~t~  392 (857)
T PLN03077        324 SVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALET--------YALMEQDNVSPDEITI  392 (857)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHH--------HHHHHHhCCCCCceeH
Confidence            4566677888999999999999998754   5677899999999999999999994        443322 222233344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      ..+-..+...|+++.|.+++..+.+.... +..++..+...|.+.|++++|.+.|++..+   .+...|..+...|...|
T Consensus       393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g  469 (857)
T PLN03077        393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNN  469 (857)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCC
Confidence            44555788899999999999999887543 467888999999999999999999998643   35567889999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~  542 (741)
                      ++++|+..|+++....+.+...+..+-..+...|..+.+...+..+++.. ..+......+...|.+.|+.++|...|+.
T Consensus       470 ~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~  549 (857)
T PLN03077        470 RCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS  549 (857)
T ss_pred             CHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999987655577777888888999999999999999988863 23455667788999999999999999988


Q ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh---cCC
Q 004622          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT---MMP  617 (741)
Q Consensus       543 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~  617 (741)
                      .    +.+...|..+...|...|+.++|+..|++..+.  .|+ ..++..+-..+.+.|+.++|.++|+...+.   .|+
T Consensus       550 ~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~  624 (857)
T PLN03077        550 H----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN  624 (857)
T ss_pred             c----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence            6    556889999999999999999999999998864  455 555666777899999999999999999843   344


Q ss_pred             chHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc-CCcccchhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622          618 HLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS-TVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKR  682 (741)
Q Consensus       618 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (741)
                        ... |..+..++.+.|++++|...++.+.- .++..+..|...+...|+.+.+....+.+....
T Consensus       625 --~~~-y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~  687 (857)
T PLN03077        625 --LKH-YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD  687 (857)
T ss_pred             --hHH-HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence              355 89999999999999999988877632 223567788888888888888877666655443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.88  E-value=3.3e-22  Score=200.91  Aligned_cols=260  Identities=17%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  460 (741)
                      ..+.+|..++..|++++|++.+.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            3346799999999999999999776554  488899999999999999999999999999999999988888888888 7


Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~  538 (741)
                      ..+++++|+.+++++.+..+ ++..+.....++...++++++...+.++....  +.++..+..+|.++.+.|++++|+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            89999999999999988765 56777888889999999999999999987654  6788999999999999999999999


Q ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      .|+++++.+|+++.+...++.++...|+++++...+.......|+++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999888889889999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622          619 LIWNLTRWRNLCFNAWPFIRRRLLCTRL  646 (741)
Q Consensus       619 ~~~~~~~~la~~~~~~g~~~~A~~~~~~  646 (741)
                       +.. +..+|.++...|+.++|..+++.
T Consensus       248 -~~~-~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  248 -PLW-LLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             -HHH-HHHHHHHHT--------------
T ss_pred             -ccc-ccccccccccccccccccccccc
Confidence             454 88999999999999999976554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.87  E-value=5.5e-22  Score=199.27  Aligned_cols=269  Identities=19%  Similarity=0.190  Sum_probs=125.4

Q ss_pred             cCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHH-Hhhcc-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622          334 SDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVT-RISKS-KSISVDFRLSRGIAQVNEGKYASAISIFDQILKED  411 (741)
Q Consensus       334 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  411 (741)
                      ..|.  .....+|.+++..|++++|..        .+. .+... .|.+..+|..+|......++++.|+..|++++..+
T Consensus         5 ~~~~--~~~l~~A~~~~~~~~~~~Al~--------~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~   74 (280)
T PF13429_consen    5 FGPS--EEALRLARLLYQRGDYEKALE--------VLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD   74 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc--ccccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445  233466999999999999999        563 34444 57888999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHH
Q 004622          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--PNSADILHER  489 (741)
Q Consensus       412 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l  489 (741)
                      +.++..+..++.+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++....  +.++.++..+
T Consensus        75 ~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  152 (280)
T PF13429_consen   75 KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL  152 (280)
T ss_dssp             ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred             ccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence            9999888888888 799999999999999987664 56777788888999999999999999987655  6788999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Q 004622          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (741)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~  569 (741)
                      |.++.+.|++++|+.+++++++.+|+++.+...++.++...|+++++...+.......|+++..+..+|.++...|++++
T Consensus       153 a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~  232 (280)
T PF13429_consen  153 AEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE  232 (280)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       570 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      |+.+|++++...|+++..+..+|.++...|+.++|..++++++..
T Consensus       233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999988753

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-18  Score=178.12  Aligned_cols=412  Identities=15%  Similarity=0.099  Sum_probs=313.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhC--CCChhHHHHHHH-HHHHcCCHHHH
Q 004622           47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLD--PTLLQAYILKGC-AFSALGRKEEA  122 (741)
Q Consensus        47 ~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~-~~~~~g~~~~A  122 (741)
                      -.-|+|+.+.++|++++... .....|+..+.+|...|.-..|+...++.+...  |+++..++.... |+...|..+++
T Consensus       334 ~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg  413 (799)
T KOG4162|consen  334 SRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG  413 (799)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence            46789999999999999877 778889999999999999999999999999998  888777666555 45667999999


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCC
Q 004622          123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS  202 (741)
Q Consensus       123 ~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  202 (741)
                      +..-.+++..--......   ....+...+.--+.                  .......                    
T Consensus       414 ldYA~kai~~~~~~~~~l---~~~~~l~lGi~y~~------------------~A~~a~~--------------------  452 (799)
T KOG4162|consen  414 LDYAQKAISLLGGQRSHL---KPRGYLFLGIAYGF------------------QARQANL--------------------  452 (799)
T ss_pred             HHHHHHHHHHhhhhhhhh---hhhHHHHHHHHHHh------------------HhhcCCC--------------------
Confidence            999999877442211100   00001111000000                  0000000                    


Q ss_pred             CCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccc
Q 004622          203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD  282 (741)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (741)
                                                                                                      
T Consensus       453 --------------------------------------------------------------------------------  452 (799)
T KOG4162|consen  453 --------------------------------------------------------------------------------  452 (799)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHH
Q 004622          283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA  362 (741)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~  362 (741)
                                                     ...+.....++++.++++++.+|+|+.+.+.++.-|..+++.+.|... 
T Consensus       453 -------------------------------~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~-  500 (799)
T KOG4162|consen  453 -------------------------------KSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDY-  500 (799)
T ss_pred             -------------------------------hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHH-
Confidence                                           001112345699999999999999999999999999999999999994 


Q ss_pred             HHhHHHHHHHhhc-cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622          363 KRNKKFCVTRISK-SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (741)
Q Consensus       363 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  441 (741)
                             ...... ....++..|..++.++-..+++.+|+.+.+.++...|+|.........+-...++.++|+..+...
T Consensus       501 -------~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~  573 (799)
T KOG4162|consen  501 -------AREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK  573 (799)
T ss_pred             -------HHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH
Confidence                   444444 477788999999999999999999999999999999998888888888888889999999998887


Q ss_pred             HHhCCCcHHH---------HHHHHHHHHHcCChHHHHHHHHHHHhh---------------------CCCC-----HHHH
Q 004622          442 IQSNPSAGEA---------WKRRGQARAALGESVEAIQDLSKALEF---------------------EPNS-----ADIL  486 (741)
Q Consensus       442 l~~~~~~~~~---------~~~la~~~~~~~~~~~A~~~~~~al~~---------------------~p~~-----~~~~  486 (741)
                      +..-.....+         ....+......++..+|+....++...                     .|..     ...|
T Consensus       574 L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lw  653 (799)
T KOG4162|consen  574 LALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLW  653 (799)
T ss_pred             HHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHH
Confidence            7654322222         222223333344555555555554332                     1111     2356


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Q 004622          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (741)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~  566 (741)
                      ...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|.+.|..++.++|+++.+...+|.++...|+
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~  733 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS  733 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            67788888888888888899999888888888999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHH--HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          567 SEKALE--CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       567 ~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ..-|..  .+..+++++|.++++|+.+|.++...|+.++|.++|+-++++++++
T Consensus       734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            877777  8888999999999999999999999999999999999998888776

>PRK12370 invasion protein regulator; Provisional

Probab=99.87  E-value=2.6e-19  Score=196.19  Aligned_cols=261  Identities=13%  Similarity=0.004  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------cHHHHHHHHHHHHHhCCCcHH
Q 004622          383 FRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQR---------ELEAAISDFTEAIQSNPSAGE  450 (741)
Q Consensus       383 ~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~~~~~~~  450 (741)
                      .++..|..++..   +++++|+.+|+++++.+|+++.++..+|.++...+         ++++|+..++++++++|+++.
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~  339 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ  339 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence            355566655443   45789999999999999999999999998877443         488999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004622          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (741)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  530 (741)
                      ++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988777777778889


Q ss_pred             CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHH
Q 004622          531 GEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (741)
Q Consensus       531 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (741)
                      |++++|+..+++++... |+++..+..+|.++...|++++|...+.++....|....++..++..|...|+  .|...++
T Consensus       420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~  497 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR  497 (553)
T ss_pred             cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence            99999999999999875 77888999999999999999999999999988888888888999999988884  7777777


Q ss_pred             HhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          610 SGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       610 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                      +.++..-.. ... ......++.-.|+.+.+....+..
T Consensus       498 ~ll~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~  533 (553)
T PRK12370        498 EFLESEQRI-DNN-PGLLPLVLVAHGEAIAEKMWNKFK  533 (553)
T ss_pred             HHHHHhhHh-hcC-chHHHHHHHHHhhhHHHHHHHHhh
Confidence            765543222 111 445788888888888887543333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.86  E-value=4.6e-17  Score=164.93  Aligned_cols=366  Identities=14%  Similarity=0.040  Sum_probs=279.1

Q ss_pred             HHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHH------------------------
Q 004622          314 DSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC------------------------  369 (741)
Q Consensus       314 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~------------------------  369 (741)
                      .+.+..-|+.|...+.++-+.-|.+...+..-+.+--..|+.+...+.........                        
T Consensus       415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags  494 (913)
T KOG0495|consen  415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS  494 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence            34445678999999999999999999998888888777776554443322221100                        


Q ss_pred             ---HHH-------hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622          370 ---VTR-------ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (741)
Q Consensus       370 ---~~~-------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  439 (741)
                         ...       +.-.....-..|+.-+..+...+.++-|+..|..+++.+|.....|...+..-..-|..++-..+++
T Consensus       495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq  574 (913)
T KOG0495|consen  495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ  574 (913)
T ss_pred             hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence               000       0112223334666777778888888889999999999999888888888888888888888888899


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (741)
Q Consensus       440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  519 (741)
                      +++...|.....|...+..+...|+...|...+..+++.+|++.++|+.-..+.....+++.|..+|.++....|. ..+
T Consensus       575 kav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv  653 (913)
T KOG0495|consen  575 KAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERV  653 (913)
T ss_pred             HHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chh
Confidence            9999889888888888888888899999999999999999988888888888888888888888888887775543 456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC
Q 004622          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (741)
Q Consensus       520 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  599 (741)
                      |+.-+.+...+++.++|+..++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            66667777777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHH-HHHhh-------------------------------
Q 004622          600 QHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLL-CTRLL-------------------------------  647 (741)
Q Consensus       600 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~-------------------------------  647 (741)
                      +.-.|...++++.-.+|.+  ..+|.....+-.+.|+.+.|.. .-+.+                               
T Consensus       734 ~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk  811 (913)
T KOG0495|consen  734 QLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK  811 (913)
T ss_pred             chhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence            8888888888888888877  3336666777777777777762 22222                               


Q ss_pred             -ccCCcccchhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622          648 -KSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKR  682 (741)
Q Consensus       648 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  682 (741)
                       ...+|.+....+..+....+++.|..-|+++.+..
T Consensus       812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence             22344567778888888888999999998887765

>TIGR00540 hemY_coli hemY protein

Probab=99.86  E-value=1e-18  Score=184.59  Aligned_cols=299  Identities=10%  Similarity=-0.019  Sum_probs=174.4

Q ss_pred             HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH-HHH
Q 004622          306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV-DFR  384 (741)
Q Consensus       306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~  384 (741)
                      ......|...+..|+++.|.+.+.++.+..|.....+...+.+....|+++.+..        .+.......|... .+.
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~--------~l~~a~~~~p~~~l~~~  156 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQ--------HLEEAAELAGNDNILVE  156 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCcCchHHH
Confidence            3344556677777777777777777777666666666666666666666666666        4444333334432 344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHH
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK----RRGQARA  460 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----~la~~~~  460 (741)
                      ...+.++...|+++.|...++++++..|+++.++..++.++...|++++|.+.+.+..+....++....    ....-..
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            445666666666666666666666666666666666666666666666666666666655333322211    1111112


Q ss_pred             HcCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHH
Q 004622          461 ALGESVEAIQDLSKALEFEP----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY--TYLGLALSSIGEYK  534 (741)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~  534 (741)
                      ..+..+++...+.++....|    +++..+..++..+...|++++|.+.++++++..|++....  ..........++.+
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~  316 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE  316 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence            22333334445555555555    3566666666666666666666666666666666665321  11222223345566


Q ss_pred             HHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622          535 KAEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQ--QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (741)
Q Consensus       535 ~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (741)
                      .++..++++++..|+++  .....+|+++.+.|++++|.++|+  .+++..|+... +..+|.++...|+.++|.+++++
T Consensus       317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence            66666666666666666  556666666666666666666666  35555555433 44666666666666666666666


Q ss_pred             hhh
Q 004622          611 GSR  613 (741)
Q Consensus       611 al~  613 (741)
                      ++.
T Consensus       396 ~l~  398 (409)
T TIGR00540       396 SLG  398 (409)
T ss_pred             HHH
Confidence            543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.6e-18  Score=164.89  Aligned_cols=287  Identities=15%  Similarity=0.088  Sum_probs=258.3

Q ss_pred             chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622          304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF  383 (741)
Q Consensus       304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  383 (741)
                      .......+|..++..|++.+|+..|+++.-++|..+......+.++...|+++.-.+        ....+.........-
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~--------L~~~Lf~~~~~ta~~  302 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA--------LMDYLFAKVKYTASH  302 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH--------HHHHHHhhhhcchhh
Confidence            345677889999999999999999999999999999999999999999999988776        444455555566777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      |+--+...+..+++..|+.+-+++++.+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.|..+..+|...|
T Consensus       303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHERG-IVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  541 (741)
                      ++.+|.-.-+.+++..|.++..+..+| .++. .-.--++|.+.+++++++.|....+...++.++...|.+..++..++
T Consensus       383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe  462 (564)
T KOG1174|consen  383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE  462 (564)
T ss_pred             hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence            999999999999999999999999987 4443 33445889999999999999999999999999999999999999999


Q ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC
Q 004622          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (741)
Q Consensus       542 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  599 (741)
                      +.+...|+ ...+..||.++...+.+++|+.+|..++.++|++..+...+-.+-....
T Consensus       463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            99999887 5688899999999999999999999999999998877766655444333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.6e-19  Score=173.52  Aligned_cols=288  Identities=21%  Similarity=0.247  Sum_probs=215.8

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004622           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (741)
Q Consensus        36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  114 (741)
                      +...+.+++.++++.+|..|+..|+.||... .++..|.+||.+++..|+|++|..+.+..++++|+..+++.+.+.++.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            3445578888999999999999999999998 678889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCC
Q 004622          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (741)
Q Consensus       115 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  194 (741)
                      .+++.-+|...|+.        .. +....         .                                        
T Consensus       129 a~~~~i~A~~~~~~--------~~-~~~~a---------n----------------------------------------  150 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKS--------KQ-AYKAA---------N----------------------------------------  150 (486)
T ss_pred             hhHHHHHHHHHhhh--------hh-hhHHh---------h----------------------------------------
Confidence            99999999988872        11 00000         0                                        


Q ss_pred             CcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccc
Q 004622          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (741)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (741)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (486)
T KOG0550|consen  151 --------------------------------------------------------------------------------  150 (486)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc
Q 004622          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (741)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  354 (741)
                                                                       |+..+++.+..+...                
T Consensus       151 -------------------------------------------------al~~~~~~~~s~s~~----------------  165 (486)
T KOG0550|consen  151 -------------------------------------------------ALPTLEKLAPSHSRE----------------  165 (486)
T ss_pred             -------------------------------------------------hhhhhhcccccccCC----------------
Confidence                                                             000000000000000                


Q ss_pred             HHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 004622          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA  434 (741)
Q Consensus       355 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  434 (741)
                                             |....+.+..+.++...|++++|+..--.+++.++.+.++++..|.+++..++.+.|
T Consensus       166 -----------------------pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka  222 (486)
T KOG0550|consen  166 -----------------------PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA  222 (486)
T ss_pred             -----------------------chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence                                   111122224455556666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhCCCcH------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCC
Q 004622          435 ISDFTEAIQSNPSAG------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKD  498 (741)
Q Consensus       435 ~~~~~~~l~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~  498 (741)
                      +..|++++.++|+..            ..+...|+-.+..|++..|.+.|..+|.++|++    +..|.+++.+..++|+
T Consensus       223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr  302 (486)
T KOG0550|consen  223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR  302 (486)
T ss_pred             HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence            666666666666543            346667777888888889999999999888876    4567888888888999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 004622          499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (741)
Q Consensus       499 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  549 (741)
                      ..+|+..++.++.++|....++...|.|+..+++|++|++.|+++++...+
T Consensus       303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999888889999999999999999999999998887655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.86  E-value=2.3e-17  Score=167.70  Aligned_cols=354  Identities=14%  Similarity=0.056  Sum_probs=212.3

Q ss_pred             hhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHH
Q 004622          311 LSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA  390 (741)
Q Consensus       311 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  390 (741)
                      +|..+-..++|++|+++|..|+..+|+|...+..++.+-.++++++....        .........|..-..|+..+..
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~--------tr~~LLql~~~~ra~w~~~Avs  152 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE--------TRNQLLQLRPSQRASWIGFAVA  152 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHhhhhhHHHHHHHHHH
Confidence            34444455677888888888888888888888888877777777777666        5555566667777777888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 004622          391 QVNEGKYASAISIFDQILKED---PMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (741)
Q Consensus       391 ~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  462 (741)
                      +.-.|++..|....+...+..   |..     .+.......+....|.+++|++.+..--..--+........|.++...
T Consensus       153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl  232 (700)
T KOG1156|consen  153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKL  232 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHH
Confidence            888888888877777666544   221     244455566666777777777666554333333344455667777777


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHH-----------------------
Q 004622          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACVKLDKENKS-----------------------  518 (741)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~-----------------------  518 (741)
                      +++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|....                       
T Consensus       233 ~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~  312 (700)
T KOG1156|consen  233 GQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR  312 (700)
T ss_pred             hhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence            88888888888888888877776666655554222223333 333333222222100                       


Q ss_pred             ---------HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hC------------cccH--HHHHHHHHHHHHcCChH
Q 004622          519 ---------AYTYLGLALSSIGEYKKAEEAHLKAIQ-------LD------------RNFL--EAWGHLTQFYQDLANSE  568 (741)
Q Consensus       519 ---------~~~~la~~~~~~~~~~~A~~~~~~al~-------~~------------~~~~--~~~~~la~~~~~~~~~~  568 (741)
                               +...+-..|   .+..+ ...+++.+.       -.            |..+  ..++.++..+...|+++
T Consensus       313 ~~l~Kg~p~vf~dl~SLy---k~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~  388 (700)
T KOG1156|consen  313 PLLSKGVPSVFKDLRSLY---KDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE  388 (700)
T ss_pred             HHhhcCCCchhhhhHHHH---hchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence                     000000000   11111 012222111       10            1112  23455677777777777


Q ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhc
Q 004622          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLK  648 (741)
Q Consensus       569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  648 (741)
                      .|..+++.++...|.-++.+...|.++...|+.++|..++..+.+++..|  ..+...-|....+..+.++|.+......
T Consensus       389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD--R~INsKcAKYmLrAn~i~eA~~~~skFT  466 (700)
T KOG1156|consen  389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD--RAINSKCAKYMLRANEIEEAEEVLSKFT  466 (700)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh--HHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence            77777777777777777777777777777777777777777777777655  3324456667777777777774433322


Q ss_pred             cCC-c-----------ccchhhHHHHhcCCCchhHhhhHHHH
Q 004622          649 STV-S-----------FAGLTLMEILIPSSRNIGAKDCIPRM  678 (741)
Q Consensus       649 ~~~-~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (741)
                      ... .           +....-|+.|.++|++..|+.-|..+
T Consensus       467 r~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  467 REGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             hcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            111 1           12233456777777777776666443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.85  E-value=8e-19  Score=185.36  Aligned_cols=354  Identities=14%  Similarity=0.140  Sum_probs=229.2

Q ss_pred             hhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhcccc
Q 004622           82 LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTC  161 (741)
Q Consensus        82 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~  161 (741)
                      +++-+.|+..+-+++++||+..+++-.+|.+|...-+...|.++|.+|.++||.+.. +..++.........++.     
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdae-aaaa~adtyae~~~we~-----  544 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAE-AAAASADTYAEESTWEE-----  544 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh-hHHHHHHHhhccccHHH-----
Confidence            356788999999999999999999999999999999999999999999999999988 33333222222111100     


Q ss_pred             ccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCcccccc
Q 004622          162 EYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGL  241 (741)
Q Consensus       162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (741)
                            ++.-+...-      ..                                .+.                      
T Consensus       545 ------a~~I~l~~~------qk--------------------------------a~a----------------------  558 (1238)
T KOG1127|consen  545 ------AFEICLRAA------QK--------------------------------APA----------------------  558 (1238)
T ss_pred             ------HHHHHHHHh------hh--------------------------------chH----------------------
Confidence                  000000000      00                                000                      


Q ss_pred             ccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCCh
Q 004622          242 HINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDS  321 (741)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  321 (741)
                                                                                  ......+...|-.+.+.+++
T Consensus       559 ------------------------------------------------------------~~~k~nW~~rG~yyLea~n~  578 (1238)
T KOG1127|consen  559 ------------------------------------------------------------FACKENWVQRGPYYLEAHNL  578 (1238)
T ss_pred             ------------------------------------------------------------HHHHhhhhhccccccCccch
Confidence                                                                        00111222345566667777


Q ss_pred             hhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHH
Q 004622          322 NTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAI  401 (741)
Q Consensus       322 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~  401 (741)
                      ..|+..|+.+++.+|++...+..++.+|.+.|++..|++        .+.++...+|.+.-..+..+......|.|.+|+
T Consensus       579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK--------vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK--------VFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH--------hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            777777777777777777777777777777777777777        666666677777777777777777777777777


Q ss_pred             HHHHHHHHhCCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHh-------C----------------------
Q 004622          402 SIFDQILKEDPMYP-------EALIGRGTARAFQRELEAAISDFTEAIQS-------N----------------------  445 (741)
Q Consensus       402 ~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~l~~-------~----------------------  445 (741)
                      ..+...+.......       +++...+..+...|-..+|..++++.++.       .                      
T Consensus       651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e  730 (1238)
T KOG1127|consen  651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE  730 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence            77777666443332       23333333333334333444443333221       0                      


Q ss_pred             CC-----------------------------------------cHHHHHHHHHHHHH--------cCChHHHHHHHHHHH
Q 004622          446 PS-----------------------------------------AGEAWKRRGQARAA--------LGESVEAIQDLSKAL  476 (741)
Q Consensus       446 ~~-----------------------------------------~~~~~~~la~~~~~--------~~~~~~A~~~~~~al  476 (741)
                      |+                                         ++..|+++|..|+.        +.+...|+.++.+++
T Consensus       731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV  810 (1238)
T KOG1127|consen  731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV  810 (1238)
T ss_pred             ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            10                                         11235556655544        123346777777777


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 004622          477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (741)
Q Consensus       477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  556 (741)
                      ++..++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++-|...|.++..++|.+...|..
T Consensus       811 ~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG  889 (1238)
T KOG1127|consen  811 SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG  889 (1238)
T ss_pred             HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence            7777777777777776 555777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCChHHHHHHHHH
Q 004622          557 LTQFYQDLANSEKALECLQQ  576 (741)
Q Consensus       557 la~~~~~~~~~~~A~~~~~~  576 (741)
                      .+.+....|+.-++...|..
T Consensus       890 ~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  890 EALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             HHHhHHHHHHHHHHHHHHHh
Confidence            66666666665555555554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.85  E-value=6.6e-19  Score=176.89  Aligned_cols=235  Identities=16%  Similarity=0.121  Sum_probs=190.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 004622          393 NEGKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA  468 (741)
Q Consensus       393 ~~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A  468 (741)
                      ..+..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34577889999999997444   3 3678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (741)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  548 (741)
                      +..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~  196 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLD  196 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999743222 2234557889999999988775543


Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHH-------HhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622          549 NFLEAWGHLTQFYQDLANSEKALECLQQV-------LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW  621 (741)
Q Consensus       549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  621 (741)
                      ..  .|. .+.++...|+...+ ..++.+       .++.|...++|+.+|.++...|++++|+.+|++++..+|.++++
T Consensus       197 ~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e  272 (296)
T PRK11189        197 KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE  272 (296)
T ss_pred             cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence            32  222 35555666766443 233333       35566778899999999999999999999999999999877566


Q ss_pred             HHHHHHHHHHHh
Q 004622          622 NLTRWRNLCFNA  633 (741)
Q Consensus       622 ~~~~~la~~~~~  633 (741)
                      . .+.+..+...
T Consensus       273 ~-~~~~~e~~~~  283 (296)
T PRK11189        273 H-RYALLELALL  283 (296)
T ss_pred             H-HHHHHHHHHH
Confidence            5 5555444443

>TIGR00540 hemY_coli hemY protein

Probab=99.85  E-value=4.6e-18  Score=179.61  Aligned_cols=292  Identities=11%  Similarity=-0.014  Sum_probs=134.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCC
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAALGE  464 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~  464 (741)
                      ..|...+..|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus        89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence            3444455555555555555555555554444444445555555555555555555555444443 233334555555555


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHHHHH
Q 004622          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKKAEEAH  540 (741)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~  540 (741)
                      ++.|...++...+..|+++.++..++.++...|++++|.+.+.+..+....++....    .........+..+++...+
T Consensus       169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            555555555555555555555555555555555555555555555544322222111    1111112223333333444


Q ss_pred             HHHHHhCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHH--HHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          541 LKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       541 ~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      .++....|    +++..+..++..+...|++++|...++++++..|++....  ..........++.+.+++.++++++.
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            44444444    2445555555555555555555555555555555443211  11122222234445555555555555


Q ss_pred             cCCchHH-HHHHHHHHHHHhCCCHHHHHHHHH--hhccCCc--ccchhhHHHHhcCCCchhHhhhHHHH
Q 004622          615 MMPHLIW-NLTRWRNLCFNAWPFIRRRLLCTR--LLKSTVS--FAGLTLMEILIPSSRNIGAKDCIPRM  678 (741)
Q Consensus       615 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (741)
                      .|++ +. .+...+|.++.+.|++++|..+++  ......|  .....++.++...|+.++|..++++.
T Consensus       329 ~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       329 VDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             CCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5554 20 224455555555555555554444  1211111  22334555555555555555554443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1e-15  Score=149.70  Aligned_cols=439  Identities=13%  Similarity=0.050  Sum_probs=288.1

Q ss_pred             HhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 004622           47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (741)
Q Consensus        47 ~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  125 (741)
                      -.++++.+|..+|++||..+ .+...|..-+.+-++.++...|...+++++.+-|.--+-++..-..-..+|+...|.+.
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            46889999999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCc
Q 004622          126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR  205 (741)
Q Consensus       126 ~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (741)
                      |++-+...|+... +...+.--...                                                       
T Consensus       164 ferW~~w~P~eqa-W~sfI~fElRy-------------------------------------------------------  187 (677)
T KOG1915|consen  164 FERWMEWEPDEQA-WLSFIKFELRY-------------------------------------------------------  187 (677)
T ss_pred             HHHHHcCCCcHHH-HHHHHHHHHHh-------------------------------------------------------
Confidence            9999999998766 44433211111                                                       


Q ss_pred             ccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCC
Q 004622          206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN  285 (741)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (741)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (677)
T KOG1915|consen  188 --------------------------------------------------------------------------------  187 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHh
Q 004622          286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN  365 (741)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~  365 (741)
                                                       +..+.|..+|++-+-.+|+ +..+...+..-.+.|+..-+......+
T Consensus       188 ---------------------------------keieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  188 ---------------------------------KEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             ---------------------------------hHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                                             1223344444444443322 222333333333334333333322222


Q ss_pred             HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccH---HHHHH----
Q 004622          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQREL---EAAIS----  436 (741)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~---~~A~~----  436 (741)
                      ....-.     +......+...|..-..+..++.|..+|+-++..-|.+-  ..+......--+-|+.   ++++.    
T Consensus       234 ie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk  308 (677)
T KOG1915|consen  234 IEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK  308 (677)
T ss_pred             HHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence            111110     111122333444444556677777777777777777662  2222222222233432   22322    


Q ss_pred             -HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHH---HHcCCHHHHHHH
Q 004622          437 -DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD-------ILHERGIVN---FKFKDFNAAVED  505 (741)
Q Consensus       437 -~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~---~~~~~~~~A~~~  505 (741)
                       -|+..++.+|.+.++|+..-.+-...|+.+.-.+.|++|+...|....       ++..+-.++   +...+.+.+.+.
T Consensus       309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v  388 (677)
T KOG1915|consen  309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV  388 (677)
T ss_pred             hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence             256667777888888877777777778888888888888877665322       122222222   245677778888


Q ss_pred             HHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622          506 LSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (741)
Q Consensus       506 ~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (741)
                      |+.++++-|..    ...|...|...+++.+...|.+.+-.++-.+|.+ ..+.....+-.++++++.....|++-+...
T Consensus       389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~  467 (677)
T KOG1915|consen  389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFS  467 (677)
T ss_pred             HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            88888877754    3566667777777788888888888888877773 344455566667778888888888888888


Q ss_pred             cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhH
Q 004622          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLM  659 (741)
Q Consensus       582 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~  659 (741)
                      |.+..+|...|.+-..+|+.+.|...|+-|+....-+.+..+|-.....-...|.++.|...|+.+....+  .++...+
T Consensus       468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA  547 (677)
T KOG1915|consen  468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA  547 (677)
T ss_pred             hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence            88888888888888888888888888888777654444555555556666777888888766655433322  3444444


Q ss_pred             HH
Q 004622          660 EI  661 (741)
Q Consensus       660 ~~  661 (741)
                      ..
T Consensus       548 ~f  549 (677)
T KOG1915|consen  548 KF  549 (677)
T ss_pred             HH
Confidence            43

>PRK12370 invasion protein regulator; Provisional

Probab=99.84  E-value=2.1e-18  Score=189.09  Aligned_cols=245  Identities=16%  Similarity=0.064  Sum_probs=208.1

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622          369 CVTRISKSKSISVDFRLSRGIAQVN---------EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (741)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  439 (741)
                      .+......+|.+..++..+|.++..         .+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+
T Consensus       283 ~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~  362 (553)
T PRK12370        283 LLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFK  362 (553)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4444555555555555555555442         3558999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 004622          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKS  518 (741)
Q Consensus       440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~  518 (741)
                      ++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++.
T Consensus       363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~  442 (553)
T PRK12370        363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI  442 (553)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence            99999999999999999999999999999999999999999998887777878888999999999999999875 78889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHC
Q 004622          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (741)
Q Consensus       519 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  598 (741)
                      ++..+|.++...|++++|...+.++....|....++..++..|...|+  +|...+++.++.....+.-....+.++.-.
T Consensus       443 ~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~  520 (553)
T PRK12370        443 LLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAH  520 (553)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence            999999999999999999999999999999989999999999998884  787777776664433332333488888889


Q ss_pred             CChHHHHHHHHHhhhhcC
Q 004622          599 GQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       599 g~~~~A~~~~~~al~~~~  616 (741)
                      |+.+.+..+ +++.+.+.
T Consensus       521 g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        521 GEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             hhhHHHHHH-HHhhccch
Confidence            998888877 77766543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=1.7e-19  Score=181.36  Aligned_cols=258  Identities=18%  Similarity=0.190  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      -+..|..++..|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYK  534 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~  534 (741)
                      .-.+|+.++.+-+...|........       ...-......+..-.+.|-.+....|  .++.+...||.+|...|+|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            9999999999999887643211110       00001111123445567777777788  78999999999999999999


Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      +|+.+|+.++...|++...|+.||..+..-.+.++|+..|++|+++.|....+++++|..++.+|.|++|.++|-.++.+
T Consensus       448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCc-----h---HHHHHHHHHHHHHhCCCHHHHH
Q 004622          615 MMPH-----L---IWNLTRWRNLCFNAWPFIRRRL  641 (741)
Q Consensus       615 ~~~~-----~---~~~~~~~la~~~~~~g~~~~A~  641 (741)
                      .+..     .   .+.+|-.|=.++...++.+-+.
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            6541     0   1223444445555566655443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.84  E-value=8.3e-17  Score=166.92  Aligned_cols=326  Identities=11%  Similarity=-0.012  Sum_probs=230.0

Q ss_pred             ChhhHHHHHHHhhccC-----CCCchhHHHHHHHHHchhcHHHHHH---HHHHhHHHHHHHhhccCCccHHHHHHHHHHH
Q 004622          320 DSNTNSESYSKSSISD-----NKSSDSTESRSKLSFKWDMLKETSN---EAKRNKKFCVTRISKSKSISVDFRLSRGIAQ  391 (741)
Q Consensus       320 ~~~~A~~~~~~a~~~~-----p~~~~~~~~la~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  391 (741)
                      .+++++.+-.+++...     --.+..+..+|.+|..+-.-..-..   ...+..-..+++....+|.++.+.+.++..|
T Consensus       409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~  488 (799)
T KOG4162|consen  409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQY  488 (799)
T ss_pred             hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4445555555555421     1134466666666655432211111   1111111244555566777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 004622          392 VNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~  470 (741)
                      ..+++.+.|.+..+++++. ..+++.+|..++.++...+++.+|+.....++...|+|.........+-...++.++|+.
T Consensus       489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~  568 (799)
T KOG4162|consen  489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD  568 (799)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence            7777777777777777777 344567777777777777777777777777777777766666666666666777777777


Q ss_pred             HHHHHHhhCCCCHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHh--------C-----C--------CC----
Q 004622          471 DLSKALEFEPNSADILHER---------GIVNFKFKDFNAAVEDLSACVKL--------D-----K--------EN----  516 (741)
Q Consensus       471 ~~~~al~~~p~~~~~~~~l---------a~~~~~~~~~~~A~~~~~~al~~--------~-----p--------~~----  516 (741)
                      .+...+.+......+...+         +......++..+|++.++++...        .     |        ..    
T Consensus       569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~  648 (799)
T KOG4162|consen  569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL  648 (799)
T ss_pred             HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence            7777776654332222222         22233334555555555554332        0     1        11    


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q 004622          517 -KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (741)
Q Consensus       517 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  595 (741)
                       ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+.++|...|..++.++|+++.+...+|.++
T Consensus       649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence             1346677888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCChHHHHH--HHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          596 HGLGQHKKAIK--DLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       596 ~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                      ...|+..-|..  .+..+++++|.+ .++ |+.+|.++...|+.++|..||...
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~n-~ea-W~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPLN-HEA-WYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCCC-HHH-HHHHHHHHHHccchHHHHHHHHHH
Confidence            99999888888  999999999998 677 999999999999999999988774

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=9.2e-19  Score=168.36  Aligned_cols=275  Identities=16%  Similarity=0.178  Sum_probs=240.3

Q ss_pred             CCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622          301 TNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS  380 (741)
Q Consensus       301 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  380 (741)
                      ...+++..+..|+.+++..+|.+|+..|..++...|++...+.+.+.++...|+++++..        .........+..
T Consensus        45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~--------dar~~~r~kd~~  116 (486)
T KOG0550|consen   45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALG--------DARQSVRLKDGF  116 (486)
T ss_pred             HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhccc--------chhhheecCCCc
Confidence            345677888999999999999999999999999999999999999999999999999988        444445556666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQIL------------KED------PMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l  442 (741)
                      .......+.++...++..+|.+.++..-            ..-      |....+....+.|+...|++++|...--..+
T Consensus       117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il  196 (486)
T KOG0550|consen  117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL  196 (486)
T ss_pred             cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence            6677788888888888888776665221            011      2234566778899999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD------------ILHERGIVNFKFKDFNAAVEDLSACV  510 (741)
Q Consensus       443 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~~~~~~A~~~~~~al  510 (741)
                      ++++.+.++++..|.+++..++.+.|+..|++++.++|++..            .+..-|.-.++.|++.+|.++|..++
T Consensus       197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal  276 (486)
T KOG0550|consen  197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL  276 (486)
T ss_pred             hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence            999999999999999999999999999999999999998643            46677888999999999999999999


Q ss_pred             HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622          511 KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       511 ~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  583 (741)
                      .++|++.    ..|.+++.+..++|+..+|+...+.++.++|....++...|.++...++|++|++.|+++++...+
T Consensus       277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999874    568889999999999999999999999999999999999999999999999999999999987655

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.83  E-value=2e-17  Score=173.66  Aligned_cols=288  Identities=12%  Similarity=0.019  Sum_probs=220.9

Q ss_pred             HHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHH
Q 004622          346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTA  424 (741)
Q Consensus       346 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~  424 (741)
                      |......|+++.|.+        .........+...-.+...+......|+++.|..+|.++.+.+|++..+. ...+.+
T Consensus        91 gl~a~~eGd~~~A~k--------~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         91 ALLKLAEGDYQQVEK--------LMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHhCCCHHHHHH--------HHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            334445677777776        33333333223333445556676899999999999999999888875433 445889


Q ss_pred             HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------HHHHHHHHc
Q 004622          425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKF  496 (741)
Q Consensus       425 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~  496 (741)
                      +...|+++.|...++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++....        .+.......
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999888887765544222        222222233


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004622          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (741)
Q Consensus       497 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  576 (741)
                      .+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++. |.++......+.+  ..++.+++++.+++
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~  319 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ  319 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence            34444555555555556778999999999999999999999999999984 4455544444443  44899999999999


Q ss_pred             HHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       577 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                      .++..|+++..+..+|.++...|++++|.++|+++++..|++  .. +..++.++...|+.++|..+|+.-
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~--~~-~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA--YD-YAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886  44 678999999999999999887753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.83  E-value=2.5e-17  Score=172.91  Aligned_cols=300  Identities=10%  Similarity=-0.000  Sum_probs=242.9

Q ss_pred             chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH-H
Q 004622          304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV-D  382 (741)
Q Consensus       304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~  382 (741)
                      .+......|...+..|+++.|.+...+.-...+.....+...+......|+++.+..        .+.......|... .
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~--------~l~~A~~~~~~~~~~  154 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQ--------HLERAAELADNDQLP  154 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHhcCCcchHH
Confidence            345556778899999999999988888766543333344444555589999999999        6777667666664 3


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH--------H
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK--------R  454 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--------~  454 (741)
                      .....+..+...|+++.|...++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+.++....        .
T Consensus       155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~  234 (398)
T PRK10747        155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG  234 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            44556999999999999999999999999999999999999999999999999999999887765443222        2


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004622          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (741)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  534 (741)
                      +........+.+...+.++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+  ..++.+
T Consensus       235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~  311 (398)
T PRK10747        235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPE  311 (398)
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChH
Confidence            2222222334455555555555566789999999999999999999999999999994 4455544444443  459999


Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      +++..+++.++..|+++..+..+|.++...+++++|..+|+++++..|++ ..+..++.++...|+.++|.++|++++.+
T Consensus       312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999985 45678999999999999999999999875


Q ss_pred             c
Q 004622          615 M  615 (741)
Q Consensus       615 ~  615 (741)
                      .
T Consensus       391 ~  391 (398)
T PRK10747        391 T  391 (398)
T ss_pred             h
Confidence            4

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.83  E-value=4.4e-18  Score=151.91  Aligned_cols=207  Identities=22%  Similarity=0.213  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  460 (741)
                      ..+.+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|-+.|+++++++|++.+++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            35667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622          461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       461 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  538 (741)
                      .+|++++|...|++++..  .|..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++-.|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888888764  355677888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH
Q 004622          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (741)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  587 (741)
                      ++++.....+-....+.....+-...|+-+.+-++=.+.....|...+.
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            8888777777777777777777777788777777777777777766543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.82  E-value=8.2e-18  Score=168.97  Aligned_cols=219  Identities=18%  Similarity=0.105  Sum_probs=178.8

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la  456 (741)
                      .+..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  536 (741)
                      .++...|++++|++.++++++.+|+++..... ..+....+++++|+..+.+.....+.....   .+.+....|+...+
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~lg~~~~~  215 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKEQWG---WNIVEFYLGKISEE  215 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCccccH---HHHHHHHccCCCHH
Confidence            99999999999999999999999998743222 234456789999999998877654332222   35555666665443


Q ss_pred             --HHHHH----HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHCC
Q 004622          537 --EEAHL----KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLG  599 (741)
Q Consensus       537 --~~~~~----~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g  599 (741)
                        +..+.    ...+..|..+.+|+++|.++...|++++|+.+|++++..+| +..+..+.+..+....+
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~  285 (296)
T PRK11189        216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ  285 (296)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence              32222    22355677788999999999999999999999999999997 66666666655554433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.82  E-value=2e-16  Score=167.52  Aligned_cols=184  Identities=18%  Similarity=0.100  Sum_probs=163.3

Q ss_pred             cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (741)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  541 (741)
                      ..+...|+..+-++++++|....++..+|.+|...-+...|.++|.++.++++.+..+.-..+..|....+++.|.....
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            34578889999999999999999999999999988899999999999999999999999999999999999999999877


Q ss_pred             HHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch
Q 004622          542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL  619 (741)
Q Consensus       542 ~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  619 (741)
                      .+-+..|..  ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+ 
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-  629 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-  629 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-
Confidence            777766654  34667789999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          620 IWNLTRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       620 ~~~~~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                       +...+..+.+....|.|.+|+..+..+
T Consensus       630 -~y~~fk~A~~ecd~GkYkeald~l~~i  656 (1238)
T KOG1127|consen  630 -KYGRFKEAVMECDNGKYKEALDALGLI  656 (1238)
T ss_pred             -HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence             444788899999999999999666554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.82  E-value=1e-17  Score=164.24  Aligned_cols=202  Identities=21%  Similarity=0.236  Sum_probs=136.7

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (741)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  458 (741)
                      .....++.+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            33566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622          459 RAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (741)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  536 (741)
                      +...|++++|+..+++++...  |.....+..+|.++...|++++|...+.+++..+|.+..++..+|.++...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777776643  334455666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (741)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (741)
                      +.++++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            66666666665555566666666666666666666655555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.82  E-value=8e-18  Score=150.23  Aligned_cols=204  Identities=21%  Similarity=0.186  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004622          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (741)
Q Consensus       415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (741)
                      ..+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++++.|++.+++++.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Q 004622          495 KFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~  572 (741)
                      .+|++++|...|++++..  .+..+..+.++|.|..+.|+++.|..+|+++++.+|+++.....++..+...|+|..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999999874  445568888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       573 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ++++.....+-..+.+.....+-...|+-+.|-++=.+.....|..
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            9988888777777778777888888899888888877777777876

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=7.7e-19  Score=163.42  Aligned_cols=274  Identities=12%  Similarity=0.075  Sum_probs=242.1

Q ss_pred             hhHHHhcCChhhHHHHHHHhhccC---CC-------CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH
Q 004622          312 SSDSASLNDSNTNSESYSKSSISD---NK-------SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV  381 (741)
Q Consensus       312 g~~~~~~~~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~  381 (741)
                      -..+|..+|...|-......++.+   |.       +......+++||.+.|.+.+|.+.        +...... ...+
T Consensus       186 ey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekq--------lqssL~q-~~~~  256 (478)
T KOG1129|consen  186 EYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQ--------LQSSLTQ-FPHP  256 (478)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHH--------HHHHhhc-CCch
Confidence            446777888888776555554432   11       334567899999999999999984        4333333 3457


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  461 (741)
                      +.+..++.+|....+...|+..|.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|+.
T Consensus       257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY  336 (478)
T KOG1129|consen  257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY  336 (478)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHH
Q 004622          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~  538 (741)
                      .++++-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++....+   -.++|+++|.+....|++.-|..
T Consensus       337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r  416 (478)
T KOG1129|consen  337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR  416 (478)
T ss_pred             CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence            999999999999999999999999999999999999999999999999987442   35899999999999999999999


Q ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (741)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  594 (741)
                      +|+-++..++++..++++||.+-.+.|+.++|..++..+-...|+..+..++++.+
T Consensus       417 cfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  417 CFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             HHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence            99999999999999999999999999999999999999999999887777766544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=1.2e-17  Score=163.81  Aligned_cols=201  Identities=18%  Similarity=0.223  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004622          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (741)
Q Consensus       415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (741)
                      +..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            57788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Q 004622          495 KFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~  572 (741)
                      ..|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++..+|+++..+..+|.++...|++++|+.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888888743  44566777788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       573 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      .+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            8888888777777777778888888888888887777665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.80  E-value=2.6e-16  Score=146.94  Aligned_cols=301  Identities=18%  Similarity=0.138  Sum_probs=252.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHH
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQAR  459 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~  459 (741)
                      +..|..+.-..+.++|++.|-.+++.+|...++...+|..+...|..+.|+..-+..+. .|+.     ..+...+|.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999999999999999999887765 4443     34788999999


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHH
Q 004622          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYK  534 (741)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~  534 (741)
                      +..|-++.|...|.........-..++..+..+|....+|++|++.-++..++.+...     ..+..++..+....+.+
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            9999999999999998887666678999999999999999999999999999887763     55777888899999999


Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGSR  613 (741)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (741)
                      .|+..+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+. +.+...+..+|..+|+.++....+.++.+
T Consensus       198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986 67888999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHhCCCHHHHH-HHHHhhccCCc-ccchhhHHHHhcC---CCchhHhhhHHHHHhhhhhccch
Q 004622          614 TMMPHLIWNLTRWRNLCFNAWPFIRRRL-LCTRLLKSTVS-FAGLTLMEILIPS---SRNIGAKDCIPRMYVKRFTDSLP  688 (741)
Q Consensus       614 ~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~  688 (741)
                      ..+..  .. ...++..-....-.+.|. ...+.+...+. ...+.|.......   |+..+.+..+..+...+++...+
T Consensus       278 ~~~g~--~~-~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~  354 (389)
T COG2956         278 TNTGA--DA-ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR  354 (389)
T ss_pred             ccCCc--cH-HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence            88775  33 456666665555566666 55566665555 3455566555543   44566666677777777665554


Q ss_pred             h
Q 004622          689 C  689 (741)
Q Consensus       689 ~  689 (741)
                      +
T Consensus       355 Y  355 (389)
T COG2956         355 Y  355 (389)
T ss_pred             c
Confidence            4

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=3.8e-18  Score=171.72  Aligned_cols=257  Identities=16%  Similarity=0.153  Sum_probs=220.0

Q ss_pred             HHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004622          342 TESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR  421 (741)
Q Consensus       342 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  421 (741)
                      -+..|..+++.|+..+|.-        +++.....+|..+++|..+|.+....++-..|+..++++++++|++.+++..|
T Consensus       288 Pf~eG~~lm~nG~L~~A~L--------afEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaL  359 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAAL--------AFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMAL  359 (579)
T ss_pred             hHHHHHHHHhcCCchHHHH--------HHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHH
Confidence            4567888899999988888        88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Q 004622          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKR-------RGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIV  492 (741)
Q Consensus       422 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~  492 (741)
                      |.+|...|.-.+|+.++.+.+...|.....-..       ..........+..-.+.|..+....|  .++++...||.+
T Consensus       360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL  439 (579)
T KOG1125|consen  360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL  439 (579)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence            999999999999999999999887654321100       00001111124455667777777777  689999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Q 004622          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (741)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~  572 (741)
                      |.-.|+|++|+.+|+.++...|++...|..+|-.+....+.++|+..|++|+++.|....++++||..+..+|.|++|++
T Consensus       440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCccc----------HHHHHHHHHHHHHCCChHHHHH
Q 004622          573 CLQQVLYIDKRF----------SKAYHLRGLLLHGLGQHKKAIK  606 (741)
Q Consensus       573 ~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~  606 (741)
                      +|-.++.+.+..          ..+|..|-.++..+++.+-+..
T Consensus       520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            999999886541          2466666677777777765443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.79  E-value=2.6e-15  Score=152.95  Aligned_cols=110  Identities=10%  Similarity=0.119  Sum_probs=98.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      .++-+.|+.++|++.+....+.+.-. .-...+...|.....+|+-++|...++.++..||.+.-.|-.+|.++....+|
T Consensus        12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y   91 (700)
T KOG1156|consen   12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY   91 (700)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence            45667899999999999999999965 44566778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622          120 EEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      ++|+++|+.||.++|+|.. ++.-++.++..+
T Consensus        92 ~eaiKcy~nAl~~~~dN~q-ilrDlslLQ~Qm  122 (700)
T KOG1156|consen   92 DEAIKCYRNALKIEKDNLQ-ILRDLSLLQIQM  122 (700)
T ss_pred             HHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHH
Confidence            9999999999999999999 777776666665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=9e-16  Score=144.67  Aligned_cols=452  Identities=13%  Similarity=-0.012  Sum_probs=309.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc-CCh-hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        42 ~~~~~~~~g~~~~Ai~~~~~al~~~-~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      ++-.++.+.||..||..++-.+..+ ... ..-.=.|.|++++|+|++|+..+.-+...+.-..+....++++++-+|.|
T Consensus        28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            3667889999999999999999877 222 33445799999999999999999999987777788999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  199 (741)
                      .+|...-.+    .|+++.-.+............+                             ....+..         
T Consensus       108 ~eA~~~~~k----a~k~pL~~RLlfhlahklndEk-----------------------------~~~~fh~---------  145 (557)
T KOG3785|consen  108 IEAKSIAEK----APKTPLCIRLLFHLAHKLNDEK-----------------------------RILTFHS---------  145 (557)
T ss_pred             HHHHHHHhh----CCCChHHHHHHHHHHHHhCcHH-----------------------------HHHHHHH---------
Confidence            999887776    4666662222221111111111                             0000000         


Q ss_pred             cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (741)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (741)
                                             .                                                        
T Consensus       146 -----------------------~--------------------------------------------------------  146 (557)
T KOG3785|consen  146 -----------------------S--------------------------------------------------------  146 (557)
T ss_pred             -----------------------H--------------------------------------------------------
Confidence                                   0                                                        


Q ss_pred             ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (741)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~  359 (741)
                                           -.+..+....++...|..-.|.+||..|.+++.-+|.-+.....++.||.++.-++-+.
T Consensus       147 ---------------------LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq  205 (557)
T KOG3785|consen  147 ---------------------LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ  205 (557)
T ss_pred             ---------------------HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence                                 00111233456777888888999999999999988887777788888888887777666


Q ss_pred             HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 004622          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDF  438 (741)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~  438 (741)
                      +        .+.......|.+.-+...++...++.=+-..|.......... +...+.+-...-.-+.--.+-+.|+..+
T Consensus       206 e--------vl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVL  277 (557)
T KOG3785|consen  206 E--------VLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVL  277 (557)
T ss_pred             H--------HHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhc
Confidence            6        556666677777777777777776654444444444443332 2222222221111111112335566666


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCC-
Q 004622          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC---VKLDK-  514 (741)
Q Consensus       439 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~p-  514 (741)
                      -..+..-   |++..+++..|..+++..+|+...+   .++|..|.-+...|.+....|+--...+.++-+   +.+-. 
T Consensus       278 P~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~  351 (557)
T KOG3785|consen  278 PSLMKHI---PEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE  351 (557)
T ss_pred             hHHHhhC---hHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence            5555544   4678888889999999999988775   478988988999999988888765554444433   33221 


Q ss_pred             -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc-ccHHHH
Q 004622          515 -----ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAY  588 (741)
Q Consensus       515 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~  588 (741)
                           +.......++.+++-..++++.+.++...-...-++....+++++++...|+|.+|.+.|-+.-...- +.....
T Consensus       352 Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~  431 (557)
T KOG3785|consen  352 SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYK  431 (557)
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHH
Confidence                 22344566788888888999999998888888888888889999999999999999998877654442 234445


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc
Q 004622          589 HLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS  652 (741)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  652 (741)
                      ..+|.+|...++++.|...+-+.-  .|.+ .-.++..++......+.+--|.+.+..+...+|
T Consensus       432 s~LArCyi~nkkP~lAW~~~lk~~--t~~e-~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  432 SMLARCYIRNKKPQLAWDMMLKTN--TPSE-RFSLLQLIANDCYKANEFYYAAKAFDELEILDP  492 (557)
T ss_pred             HHHHHHHHhcCCchHHHHHHHhcC--Cchh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence            678999999999999887765431  2333 445466677777778887777766666655555

>PLN02789 farnesyltranstransferase

Probab=99.78  E-value=9e-17  Score=160.38  Aligned_cols=209  Identities=16%  Similarity=0.166  Sum_probs=189.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh--H
Q 004622          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES--V  466 (741)
Q Consensus       390 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~--~  466 (741)
                      ++...+.+++|+..+.+++..+|.+..+|..++.++..+| ++++++..+.++++.+|++..+|...+.++...|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            3556789999999999999999999999999999999998 689999999999999999999999999999888874  7


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHH
Q 004622          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY----KKAEEA  539 (741)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~  539 (741)
                      +++..+.++++.+|++..+|..++.++...|+++++++++.++++.+|.+..+|+.++.+....   |.+    ++++.+
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999999999988776   333    578888


Q ss_pred             HHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHC
Q 004622          540 HLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (741)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  598 (741)
                      ..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++..++.+|...
T Consensus       206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            889999999999999999999987    45667899999999998999999999999999863

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.5e-18  Score=161.73  Aligned_cols=119  Identities=29%  Similarity=0.390  Sum_probs=111.7

Q ss_pred             HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004622           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG  110 (741)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g  110 (741)
                      ...-+..-|.+++++++.++|++|++.|++||+++ .|+.+|+|||.+|.++|.|+.|+++|+++|.+||++.++|.++|
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG  156 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG  156 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            34556677899999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622          111 CAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      .+|..+|++++|+..|+++|.++|+|.. ++..|..+....
T Consensus       157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~-~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALELDPDNES-YKSNLKIAEQKL  196 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhccCCCcHH-HHHHHHHHHHHh
Confidence            9999999999999999999999999998 888887776666

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.2e-15  Score=142.64  Aligned_cols=264  Identities=16%  Similarity=0.093  Sum_probs=165.8

Q ss_pred             hhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccC----CccHHHHHHH
Q 004622          312 SSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSK----SISVDFRLSR  387 (741)
Q Consensus       312 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  387 (741)
                      |..+.-.++-++|+..|-.+++.+|...++...+|.++.+.|..+.|+.        .-..+....    .....+...+
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIR--------iHQ~L~~spdlT~~qr~lAl~qL  113 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIR--------IHQTLLESPDLTFEQRLLALQQL  113 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHH--------HHHHHhcCCCCchHHHHHHHHHH
Confidence            5555556777777777777777777777777777777777777777766        222222211    1223356666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc
Q 004622          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARAAL  462 (741)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~  462 (741)
                      |.-|+..|-++.|...|....+...--..++-.+..+|....+|++|++..++..++.+..     ...+..+|..+...
T Consensus       114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~  193 (389)
T COG2956         114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS  193 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence            7777777777777777766665444445666666777777777777777777666665543     23455566666666


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHL  541 (741)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~  541 (741)
                      .+.+.|+..+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+|... .+...+..+|..+|+.++.+..+.
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666653 455556666666666666666666


Q ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (741)
Q Consensus       542 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  584 (741)
                      ++.+..++ +.+-..++..-....-.+.|..++.+-+...|+.
T Consensus       274 ~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~  315 (389)
T COG2956         274 RAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM  315 (389)
T ss_pred             HHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence            66666555 3334444444444455566666666666666653

>PLN02789 farnesyltranstransferase

Probab=99.77  E-value=9.8e-17  Score=160.10  Aligned_cols=220  Identities=15%  Similarity=0.143  Sum_probs=195.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 004622          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLS  473 (741)
Q Consensus       395 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~  473 (741)
                      ++|.+|..+|+.++.                 ..+++++|+..+.++++++|.+..+|...+.++...| ++++++..+.
T Consensus        34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~   96 (320)
T PLN02789         34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE   96 (320)
T ss_pred             HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            566666666666554                 4567889999999999999999999999999999998 6899999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622          474 KALEFEPNSADILHERGIVNFKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (741)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  551 (741)
                      ++++.+|++..+|...+.++...|+.  ++++.++.++++.+|++..+|...+.++...|++++++.++.++++.+|.+.
T Consensus        97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789         97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence            99999999999999999999999874  7889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHc---CCh----HHHHHHHHHHHhhCcccHHHHHHHHHHHHH----CCChHHHHHHHHHhhhhcCCchH
Q 004622          552 EAWGHLTQFYQDL---ANS----EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGSRTMMPHLI  620 (741)
Q Consensus       552 ~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  620 (741)
                      .+|+..+.+....   |.+    ++++.+..+++..+|++..+|..++.++..    +++..+|+..+.+++...|.+ .
T Consensus       177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~  255 (320)
T PLN02789        177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-V  255 (320)
T ss_pred             hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-H
Confidence            9999999998776   333    478889999999999999999999999988    456678999999999988887 5


Q ss_pred             HHHHHHHHHHHHh
Q 004622          621 WNLTRWRNLCFNA  633 (741)
Q Consensus       621 ~~~~~~la~~~~~  633 (741)
                      .+ +..++.+|..
T Consensus       256 ~a-l~~l~d~~~~  267 (320)
T PLN02789        256 FA-LSDLLDLLCE  267 (320)
T ss_pred             HH-HHHHHHHHHh
Confidence            55 7888888875

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=4.2e-14  Score=142.73  Aligned_cols=424  Identities=12%  Similarity=0.061  Sum_probs=281.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      ..++++..+|+|++|++...+.+.+. .+..++..--.|.++++.|++|+...++-..+.-.+. ..|..+.|++++|+.
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccH
Confidence            56888999999999999999999988 5566677777899999999999955444333322222 127899999999999


Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  199 (741)
                      |+|+..++.   +++.+..                                                             
T Consensus        96 Dealk~~~~---~~~~~~~-------------------------------------------------------------  111 (652)
T KOG2376|consen   96 DEALKTLKG---LDRLDDK-------------------------------------------------------------  111 (652)
T ss_pred             HHHHHHHhc---ccccchH-------------------------------------------------------------
Confidence            999988883   2332221                                                             


Q ss_pred             cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (741)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (741)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (652)
T KOG2376|consen  112 --------------------------------------------------------------------------------  111 (652)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (741)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~  359 (741)
                                                 .....+..+|+.++|++|+.+|+..++.+.++.+......... ..    .+.
T Consensus       112 ---------------------------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a-~~----a~l  159 (652)
T KOG2376|consen  112 ---------------------------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA-VA----AAL  159 (652)
T ss_pred             ---------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HH----Hhh
Confidence                                       1112366789999999999999999987766554322111110 00    000


Q ss_pred             HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC-------HHHHHHHHHH
Q 004622          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED--------PMY-------PEALIGRGTA  424 (741)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~~~~~la~~  424 (741)
                      .     .+ ...........+.+.+|+.|.++...|+|.+|++.+++++.+.        .+.       ..+...++.+
T Consensus       160 ~-----~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV  233 (652)
T KOG2376|consen  160 Q-----VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV  233 (652)
T ss_pred             h-----HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence            0     00 1222233334477899999999999999999999999995431        111       2456789999


Q ss_pred             HHHcccHHHHHHHHHHHHHhCCCcHHH-------------------------------------------------HHHH
Q 004622          425 RAFQRELEAAISDFTEAIQSNPSAGEA-------------------------------------------------WKRR  455 (741)
Q Consensus       425 ~~~~~~~~~A~~~~~~~l~~~~~~~~~-------------------------------------------------~~~l  455 (741)
                      +..+|+.++|...|...++.+|.+...                                                 +.+.
T Consensus       234 lQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~  313 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN  313 (652)
T ss_pred             HHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887754321                                                 1112


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHH
Q 004622          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYK  534 (741)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~  534 (741)
                      +.+.+..+.-+.+.+.....-...|..............+...+.+|..++....+.+|.. ..+...++.+.+.+|+++
T Consensus       314 ~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~  393 (652)
T KOG2376|consen  314 ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE  393 (652)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence            2222222222222222222222222222222222333333347888999999999999988 577888899999999999


Q ss_pred             HHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHCCC
Q 004622          535 KAEEAHLKAIQLD-------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHGLGQ  600 (741)
Q Consensus       535 ~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~  600 (741)
                      .|+..+...+...       ...|.+-..+-..+...++...|...+.+++.-       .+.....+...+.+..+.|+
T Consensus       394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~  473 (652)
T KOG2376|consen  394 VALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN  473 (652)
T ss_pred             HHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence            9999998433211       122444455556677777766676666666653       22334456677888888899


Q ss_pred             hHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccC
Q 004622          601 HKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKST  650 (741)
Q Consensus       601 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  650 (741)
                      -++|...+++.++.+|++ ... +..+..+|... +.+.|..+-+.+.+.
T Consensus       474 ~~ea~s~leel~k~n~~d-~~~-l~~lV~a~~~~-d~eka~~l~k~L~p~  520 (652)
T KOG2376|consen  474 EEEASSLLEELVKFNPND-TDL-LVQLVTAYARL-DPEKAESLSKKLPPL  520 (652)
T ss_pred             hHHHHHHHHHHHHhCCch-HHH-HHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence            999999999999999998 444 55665555544 577777666665443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.75  E-value=6.5e-16  Score=160.58  Aligned_cols=240  Identities=18%  Similarity=0.155  Sum_probs=124.4

Q ss_pred             hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622          373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (741)
Q Consensus       373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  444 (741)
                      .....|....+...+|..|...|+|+.|+..++.+++.        .|.-......+|.+|..++++.+|+..|++++.+
T Consensus       191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34445555555555666666666666666666666665        3332333334566666666666666666666543


Q ss_pred             --------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004622          445 --------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSA  508 (741)
Q Consensus       445 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (741)
                              +|.-..++.+||.+|...|++++|..++++++++...        -...+..++.++..++++++|..++++
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence                    2222344555666666666666666666655554211        123344555555555555555555555


Q ss_pred             HHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHHHH
Q 004622          509 CVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALE  572 (741)
Q Consensus       509 al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~  572 (741)
                      ++++.        |.-...+.++|.+|..+|++++|.+++++++.+.        +.....+..+|..+.+.+++.+|..
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence            55431        1112344555555555555555555555555443        1112344455555555555555555


Q ss_pred             HHHHHHhh-------CcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622          573 CLQQVLYI-------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS  612 (741)
Q Consensus       573 ~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (741)
                      .|.++..+       .|+....+.+||.+|..+|++++|+++.++++
T Consensus       431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            55555443       12223345555555555555555555555544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.72  E-value=6.1e-15  Score=153.39  Aligned_cols=237  Identities=18%  Similarity=0.149  Sum_probs=183.1

Q ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 004622          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE---  479 (741)
Q Consensus       411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---  479 (741)
                      +|.-..+...++..|...|++++|+..++.+++.        .|.-......+|.+|...+++.+|+..|++++.+.   
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            4555667777999999999999999999999887        44444556668899999999999999999998763   


Q ss_pred             --CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          480 --PNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (741)
Q Consensus       480 --p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  546 (741)
                        +++   ..++.+||.+|...|++++|..++++++++.        |.-...+..++.++..++++++|+.++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence              333   4578889999999999999999999888762        222356777888888899999999999888876


Q ss_pred             C--------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622          547 D--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (741)
Q Consensus       547 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (741)
                      .        +.-+..+.++|.+|..+|++++|.+.|++++++.        +.....+..+|..+.+.+++.+|.+.|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            3        2235678889999999999999999999998764        22345677888888888998888888888


Q ss_pred             hhhhc----CCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          611 GSRTM----MPH-LIWNLTRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       611 al~~~----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                      +..+.    |++ .....+.+|+.+|..+|+++.|+++...+
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            86543    322 13344888888999999999888765554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=6.6e-13  Score=134.24  Aligned_cols=417  Identities=14%  Similarity=0.110  Sum_probs=266.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHH
Q 004622           14 NKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD   93 (741)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~   93 (741)
                      .++.++....+.++.+.+....++.+++..  +++.+.|+.|+..-+.-.....+....+..|.|.++++..++|+..++
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvVa--lIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~  103 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVA--LIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK  103 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhh--hhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence            456677777888888866678888888776  899999999984433322222233444799999999999999999998


Q ss_pred             HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhh
Q 004622           94 KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLT  173 (741)
Q Consensus        94 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (741)
                         ..++.........|++++.+|+|++|.+.|+..++-+-++.+ ............... +                 
T Consensus       104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d-~~~r~nl~a~~a~l~-~-----------------  161 (652)
T KOG2376|consen  104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD-EERRANLLAVAAALQ-V-----------------  161 (652)
T ss_pred             ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHhhh-H-----------------
Confidence               567777789999999999999999999999998877766555 111111110000000 0                 


Q ss_pred             hhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCccccccccc
Q 004622          174 VSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN  253 (741)
Q Consensus       174 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (741)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (652)
T KOG2376|consen  162 --------------------------------------------------------------------------------  161 (652)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhc
Q 004622          254 HNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSI  333 (741)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~  333 (741)
                                                                                              . ..+...
T Consensus       162 ------------------------------------------------------------------------~-~~q~v~  168 (652)
T KOG2376|consen  162 ------------------------------------------------------------------------Q-LLQSVP  168 (652)
T ss_pred             ------------------------------------------------------------------------H-HHHhcc
Confidence                                                                                    0 000000


Q ss_pred             cCC-CCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          334 SDN-KSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS-------VDFRLSRGIAQVNEGKYASAISIFD  405 (741)
Q Consensus       334 ~~p-~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~g~~~~A~~~~~  405 (741)
                      ..| ++-+.+++.+.++...|+|.+|++.+..+.+.|.+.+...+...       .-+...++.++...|+..+|..+|.
T Consensus       169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~  248 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV  248 (652)
T ss_pred             CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            001 23334445555555555555555555555555555554433331       2356788999999999999999999


Q ss_pred             HHHHhCCCCHHHHH-------------------------------------------------HHHHHHHHcccHHHHHH
Q 004622          406 QILKEDPMYPEALI-------------------------------------------------GRGTARAFQRELEAAIS  436 (741)
Q Consensus       406 ~al~~~p~~~~~~~-------------------------------------------------~la~~~~~~~~~~~A~~  436 (741)
                      ..++.+|.+.....                                                 +.+...+..+..+.+.+
T Consensus       249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~  328 (652)
T KOG2376|consen  249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE  328 (652)
T ss_pred             HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99998775432111                                                 11111111111122211


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q 004622          437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACV-----  510 (741)
Q Consensus       437 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al-----  510 (741)
                      ...+.-...|....-.............+.+|..++....+.+|.+ ..+...++.+.+.+|+++.|++.+...+     
T Consensus       329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s  408 (652)
T KOG2376|consen  329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS  408 (652)
T ss_pred             HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence            1111111122222222223333333447889999999999999987 6788899999999999999999999433     


Q ss_pred             ---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622          511 ---KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (741)
Q Consensus       511 ---~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (741)
                         +.. ..+.+.-.+-..++..++-+.|...+.+++.-       .+.....+...+..-.+.|+-++|...+++.++.
T Consensus       409 s~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~  487 (652)
T KOG2376|consen  409 SILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF  487 (652)
T ss_pred             hhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence               221 12333334445566666655566655555543       3333446667788888889999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHCCChHHHHHHHH
Q 004622          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (741)
Q Consensus       581 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (741)
                      +|++.+++..+...|... +.+.|..+=+
T Consensus       488 n~~d~~~l~~lV~a~~~~-d~eka~~l~k  515 (652)
T KOG2376|consen  488 NPNDTDLLVQLVTAYARL-DPEKAESLSK  515 (652)
T ss_pred             CCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence            999999998888877765 4566655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.70  E-value=3.1e-14  Score=149.13  Aligned_cols=164  Identities=9%  Similarity=-0.026  Sum_probs=114.4

Q ss_pred             hhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHH
Q 004622          312 SSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ  391 (741)
Q Consensus       312 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  391 (741)
                      |..++..|++++|+..++++++.+|.+...+.. +..++..|.+.........    .........|........+|.++
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVAR----VLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHH----HHhccCcCCCCcHHHHHHHHHHH
Confidence            556677889999999999999999999876664 5555555544433332111    22223455566666667777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHH
Q 004622          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVE  467 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~  467 (741)
                      ...|++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++...|..+    ..+..+|.++...|++++
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            7788888888888888887777777777777777777888888887777777665332    234567777777777777


Q ss_pred             HHHHHHHHHhhCC
Q 004622          468 AIQDLSKALEFEP  480 (741)
Q Consensus       468 A~~~~~~al~~~p  480 (741)
                      |+..+++++...|
T Consensus       205 A~~~~~~~~~~~~  217 (355)
T cd05804         205 ALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHhcccc
Confidence            7777777765554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3e-11  Score=118.86  Aligned_cols=445  Identities=12%  Similarity=0.054  Sum_probs=342.8

Q ss_pred             HHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622           57 RILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (741)
Q Consensus        57 ~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  135 (741)
                      .-|+-.|.-+ -+...|..-|.--.+++++..|...+++||..|-.+...++..+.+-++.....-|...+.+|+.+-|.
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR  139 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR  139 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence            3455555555 556667778888888889999999999999999888889999999999999999999999998888876


Q ss_pred             ChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCC
Q 004622          136 QSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSS  215 (741)
Q Consensus       136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (741)
                      -...+...+                                                                       
T Consensus       140 VdqlWyKY~-----------------------------------------------------------------------  148 (677)
T KOG1915|consen  140 VDQLWYKYI-----------------------------------------------------------------------  148 (677)
T ss_pred             HHHHHHHHH-----------------------------------------------------------------------
Confidence            444111110                                                                       


Q ss_pred             CCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccc
Q 004622          216 HDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNE  295 (741)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (741)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (677)
T KOG1915|consen  149 --------------------------------------------------------------------------------  148 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc
Q 004622          296 RHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK  375 (741)
Q Consensus       296 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  375 (741)
                                       ..--..|+..-|.++|++-+...|+ ..++......-.+....+.|..        .+++..-
T Consensus       149 -----------------ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~--------IYerfV~  202 (677)
T KOG1915|consen  149 -----------------YMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARS--------IYERFVL  202 (677)
T ss_pred             -----------------HHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhe
Confidence                             0011235566688999999988865 4556666666667777777776        5566555


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HH
Q 004622          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA--GE  450 (741)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~  450 (741)
                      .. ..+..|+..+..-...|+...|...|+++++.-.++.   ..+...|..-..+..++.|.-.|.-++..-|.+  ..
T Consensus       203 ~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee  281 (677)
T KOG1915|consen  203 VH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE  281 (677)
T ss_pred             ec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence            55 4577899999999999999999999999998765543   334455566667788999999999999998887  33


Q ss_pred             HHHHHHHHHHHcCCh---HHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----
Q 004622          451 AWKRRGQARAALGES---VEAI-----QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----  518 (741)
Q Consensus       451 ~~~~la~~~~~~~~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----  518 (741)
                      .+..+-..--+-|+.   ++++     -.|++.++.+|.+-++|+..-.+-...|+.+.-.+.|++++...|....    
T Consensus       282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W  361 (677)
T KOG1915|consen  282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW  361 (677)
T ss_pred             HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence            444444444445553   3333     3577888999999999999999999999999999999999998776431    


Q ss_pred             ---HHHHHHHHH---HHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHH
Q 004622          519 ---AYTYLGLAL---SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY  588 (741)
Q Consensus       519 ---~~~~la~~~---~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  588 (741)
                         .+..+-.++   +...+.+.+.+.|+.++++-|..    ...|...|.....+.+...|.+.+-.++...|. ....
T Consensus       362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlF  440 (677)
T KOG1915|consen  362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLF  440 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHH
Confidence               222222222   34789999999999999998864    668888999999999999999999999999998 4556


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc-----ccchhhHHHHh
Q 004622          589 HLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS-----FAGLTLMEILI  663 (741)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~  663 (741)
                      -....+-.++++++.....|++.++..|++ ... |...|.+-..+|+.+.|...|....+.+.     ..+-.....-.
T Consensus       441 k~YIelElqL~efDRcRkLYEkfle~~Pe~-c~~-W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi  518 (677)
T KOG1915|consen  441 KGYIELELQLREFDRCRKLYEKFLEFSPEN-CYA-WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI  518 (677)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcChHh-hHH-HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence            666777889999999999999999999998 555 88999999999999999988888755543     34455556677


Q ss_pred             cCCCchhHhhhHHHHHhhh
Q 004622          664 PSSRNIGAKDCIPRMYVKR  682 (741)
Q Consensus       664 ~~g~~~~A~~~~~~~~~~~  682 (741)
                      ..|.++.|...|++.+...
T Consensus       519 ~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  519 EEGEFEKARALYERLLDRT  537 (677)
T ss_pred             hcchHHHHHHHHHHHHHhc
Confidence            8899999999999887754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.67  E-value=1.9e-13  Score=143.19  Aligned_cols=305  Identities=12%  Similarity=-0.029  Sum_probs=225.2

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (741)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  453 (741)
                      +|..+..+..+|..+...|+.+.+...+.++....|.+   .+.....+.++...|++++|...++++++.+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            57788889999999999999999999999998887754   466778899999999999999999999999999987776


Q ss_pred             HHHHHHHHcCC----hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004622          454 RRGQARAALGE----SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (741)
Q Consensus       454 ~la~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  529 (741)
                      . +..+...|+    ...+...+.......|.....+..+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            5 555555444    44444444443356677778888899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc--cHHHHH---HHHHHHHHCCC
Q 004622          530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYH---LRGLLLHGLGQ  600 (741)
Q Consensus       530 ~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~  600 (741)
                      .|++++|+.++++++...|..+    ..+..++.++...|++++|+..|++++...|.  ......   .+...+...|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            9999999999999999876432    35668999999999999999999999876662  221111   22333344454


Q ss_pred             hHHHHHH--H-HHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc---C---Cc------ccchhhHHHHhcC
Q 004622          601 HKKAIKD--L-SSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS---T---VS------FAGLTLMEILIPS  665 (741)
Q Consensus       601 ~~~A~~~--~-~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~---~~------~~~~~l~~~~~~~  665 (741)
                      ...+..+  . .......|...........+.++...|+.+.|......+..   .   ..      ......+..+...
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            3333333  1 11111112121112134688888999999998855544322   1   11      2334456777899


Q ss_pred             CCchhHhhhHHHHHhhh
Q 004622          666 SRNIGAKDCIPRMYVKR  682 (741)
Q Consensus       666 g~~~~A~~~~~~~~~~~  682 (741)
                      |++.+|+..+..+...-
T Consensus       321 g~~~~A~~~L~~al~~a  337 (355)
T cd05804         321 GNYATALELLGPVRDDL  337 (355)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999987776543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=3.3e-13  Score=127.61  Aligned_cols=368  Identities=13%  Similarity=0.057  Sum_probs=269.9

Q ss_pred             hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHH--HHH----H------
Q 004622          305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKF--CVT----R------  372 (741)
Q Consensus       305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~--~~~----~------  372 (741)
                      .+....+|.++|+.|+|++|+..|+-+...+..+.....+++.+++-.|.|.+|.....++.+-  +..    .      
T Consensus        57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence            4667789999999999999999999999988778889999999999999999998753333211  000    0      


Q ss_pred             ---h---hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 004622          373 ---I---SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (741)
Q Consensus       373 ---~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  446 (741)
                         +   -..-....+-.+.+|.+++..-.|++|++.|.+++..+|+....-..++.||+++.-++-+.+.+.-.++..|
T Consensus       137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p  216 (557)
T KOG3785|consen  137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP  216 (557)
T ss_pred             HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence               0   0011122244567888888899999999999999999999888888999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHH----------------------------HhhCCC----CHHHHHHHHHHHH
Q 004622          447 SAGEAWKRRGQARAALGESVEAIQDLSKA----------------------------LEFEPN----SADILHERGIVNF  494 (741)
Q Consensus       447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------------------l~~~p~----~~~~~~~la~~~~  494 (741)
                      +.+.+....+..+++.=+-..|.......                            ++.-|.    -|++..++...|.
T Consensus       217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL  296 (557)
T KOG3785|consen  217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL  296 (557)
T ss_pred             CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec
Confidence            99888777776665532222222221111                            111121    3677888999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC------cccHHHHHHHHHHHHHcC
Q 004622          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LD------RNFLEAWGHLTQFYQDLA  565 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~------~~~~~~~~~la~~~~~~~  565 (741)
                      ++++..+|+..++.   ++|..+.-+...|.++...|+--...+.++-+-+   +-      -+.......++.+++-..
T Consensus       297 ~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~  373 (557)
T KOG3785|consen  297 NQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF  373 (557)
T ss_pred             ccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence            99999999888764   5899999999999999998886665555544432   21      122345667788888889


Q ss_pred             ChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004622          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTR  645 (741)
Q Consensus       566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  645 (741)
                      ++++.+.++...-...-++....+++|.++...|++.+|.+.|-+.-..+-.+.... ...+++||...+..+-|+..+-
T Consensus       374 qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y-~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  374 QFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILY-KSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHH-HHHHHHHHHhcCCchHHHHHHH
Confidence            999999999888887778888899999999999999999999988766554442222 5688999999999999996543


Q ss_pred             hhc-cCCcccch-hhHHHHhcCCCchhHhhhHH
Q 004622          646 LLK-STVSFAGL-TLMEILIPSSRNIGAKDCIP  676 (741)
Q Consensus       646 ~~~-~~~~~~~~-~l~~~~~~~g~~~~A~~~~~  676 (741)
                      ... +....+.+ -++...+.++.+--|-..|.
T Consensus       453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd  485 (557)
T KOG3785|consen  453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFD  485 (557)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            322 22222222 23455556666555544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.65  E-value=1.9e-12  Score=136.81  Aligned_cols=131  Identities=15%  Similarity=0.083  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  461 (741)
                      .+++.+|..|-..|++++|+.+.++++...|..++.+...|.++-+.|++.+|.+.++.+..+++.+--.....+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999998888888999999


Q ss_pred             cCChHHHHHHHHHHHhhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          462 LGESVEAIQDLSKALEFEPN--S-------ADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                      .|+.++|...+....+.+.+  .       .......|.+|.+.|++..|++.|..+.+.
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999998877665421  1       223456789999999999999999988775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.63  E-value=4.2e-14  Score=138.36  Aligned_cols=190  Identities=16%  Similarity=0.162  Sum_probs=158.2

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--
Q 004622          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--  450 (741)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--  450 (741)
                      ..+..++.++.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++..|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4567788999999999999999999999999999999876   67899999999999999999999999999998765  


Q ss_pred             -HHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622          451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (741)
Q Consensus       451 -~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  521 (741)
                       +++.+|.++...        |++++|++.+++++..+|++......+..+....+    .             ......
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~  170 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL  170 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence             688999999876        78999999999999999998765533332211100    0             012235


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc
Q 004622          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (741)
Q Consensus       522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  582 (741)
                      .+|.++...|++.+|+..+++++...|+.   +.+++.+|.++...|++++|..+++......|
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            78888999999999999999999987654   57999999999999999999998888776665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.62  E-value=5.8e-14  Score=137.39  Aligned_cols=189  Identities=15%  Similarity=0.060  Sum_probs=158.7

Q ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---
Q 004622          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---  484 (741)
Q Consensus       411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---  484 (741)
                      ++..+..++.+|..+...|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++..|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            455688999999999999999999999999999999876   57899999999999999999999999999998765   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 004622          485 ILHERGIVNFKF--------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (741)
Q Consensus       485 ~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  556 (741)
                      +++.+|.++...        |++++|++.+++++..+|++..++..+..+....+                 ........
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-----------------~~~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-----------------RLAGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----------------HHHHHHHH
Confidence            688999999876        78999999999999999998766543332211100                 01223457


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622          557 LTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       557 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  616 (741)
                      +|.++...|++.+|+..+++++...|+.   +.+++.+|.++..+|++++|..+++......|
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8899999999999999999999997754   68999999999999999999999888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.61  E-value=2e-12  Score=136.72  Aligned_cols=293  Identities=14%  Similarity=0.064  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  460 (741)
                      .++++..+.++...|++++|+++++.....-.+....+-..|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            46677888899999999999999999888888888999999999999999999999999999999999999999888873


Q ss_pred             HcC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004622          461 ALG-----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA-AVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (741)
Q Consensus       461 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  534 (741)
                      ...     +.+.-...|++.....|....+.. +...+..-..|.. +..++...+..  .-|.+...+-.+|....+..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence            333     467778888888888876432211 1111111111221 22222222221  22333333333332222111


Q ss_pred             HHHHHHHHHHHh---------------Cccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 004622          535 KAEEAHLKAIQL---------------DRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (741)
Q Consensus       535 ~A~~~~~~al~~---------------~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  597 (741)
                      -....+......               .|..  ..+++.++..|...|++++|+.++++++...|..++.+...|.++..
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh  240 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            111111111110               0111  12345555666566666666666666666666666666666666666


Q ss_pred             CCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCC--c----------ccchhhHHHHhcC
Q 004622          598 LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTV--S----------FAGLTLMEILIPS  665 (741)
Q Consensus       598 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~----------~~~~~l~~~~~~~  665 (741)
                      .|++.+|.+.++.+-.+++.+  ..+....+..+.+.|+.++|...........  |          +.....|+.+.+.
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDLAD--RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             CCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666655554  3324444555555666666654444432211  1          1223345555556


Q ss_pred             CCchhHhhhHHHH
Q 004622          666 SRNIGAKDCIPRM  678 (741)
Q Consensus       666 g~~~~A~~~~~~~  678 (741)
                      |++..|+..|..+
T Consensus       319 ~~~~~ALk~~~~v  331 (517)
T PF12569_consen  319 GDYGLALKRFHAV  331 (517)
T ss_pred             hhHHHHHHHHHHH
Confidence            6665555555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.61  E-value=5.9e-12  Score=122.10  Aligned_cols=297  Identities=12%  Similarity=0.023  Sum_probs=199.5

Q ss_pred             hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhcc-CCccHHH
Q 004622          305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKS-KSISVDF  383 (741)
Q Consensus       305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~  383 (741)
                      +......|..-+..|+|..|.+...+.-+..+.....+..-+.+.-.+|+.+.+-.        ++.++.+. .......
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~--------yL~eaae~~~~~~l~v  155 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANR--------YLAEAAELAGDDTLAV  155 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHH--------HHHHHhccCCCchHHH
Confidence            34444557777778888888888888887777777777777777777787777766        45444443 4445566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HH--HHHHHHH--
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EA--WKRRGQA--  458 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~--~~~la~~--  458 (741)
                      .+.++......|+++.|..-..++++..|.++.++.....+|...|++.+...++.+..+..--+. +.  +-..+..  
T Consensus       156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl  235 (400)
T COG3071         156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL  235 (400)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence            777888888888888888888888888888888888888888888888888877777665432221 11  1111111  


Q ss_pred             HHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622          459 RAALGE---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (741)
Q Consensus       459 ~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  535 (741)
                      +.+..+   .+.-..+++..-..-.+++.+...++.-+...|+.++|.+....+++..-+.. ....  .-...-++...
T Consensus       236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~  312 (400)
T COG3071         236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEP  312 (400)
T ss_pred             HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchH
Confidence            111222   22222234433333345567777777777788888888888887777543322 1111  12335667777


Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSR  613 (741)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (741)
                      =++..++.++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+.++.++.
T Consensus       313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            777777777777777777778888888888888888888877777765 56677777888888888888777777764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.57  E-value=7.7e-14  Score=123.38  Aligned_cols=101  Identities=21%  Similarity=0.138  Sum_probs=39.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (741)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  535 (741)
                      |.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~e  110 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGL  110 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHHHhCcccHHHHHH
Q 004622          536 AEEAHLKAIQLDRNFLEAWGH  556 (741)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~  556 (741)
                      |+..|++++...|+++..+.+
T Consensus       111 Ai~~~~~Al~~~p~~~~~~~~  131 (144)
T PRK15359        111 AREAFQTAIKMSYADASWSEI  131 (144)
T ss_pred             HHHHHHHHHHhCCCChHHHHH
Confidence            333333333333333333333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.57  E-value=5.8e-14  Score=124.16  Aligned_cols=125  Identities=18%  Similarity=0.102  Sum_probs=92.6

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 004622          470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (741)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  549 (741)
                      ..++++++++|++   +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4667777777653   4556777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 004622          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (741)
Q Consensus       550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  597 (741)
                      ++.+++++|.++...|++++|+..|++++...|+++..+..+|.+...
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777766665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.53  E-value=1.6e-12  Score=119.46  Aligned_cols=177  Identities=20%  Similarity=0.189  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (741)
Q Consensus       434 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (741)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            555555556667777777 7777777777777777777777777777777777667777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHH
Q 004622          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (741)
Q Consensus       514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  593 (741)
                      |+++.+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777666666777777777


Q ss_pred             HHHHCCChHHHHHHHHHh
Q 004622          594 LLHGLGQHKKAIKDLSSG  611 (741)
Q Consensus       594 ~~~~~g~~~~A~~~~~~a  611 (741)
                      +....|++.+|...-.+-
T Consensus       211 ~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         211 VVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHhhcCChHHHHhhcccc
Confidence            777777777776655443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.52  E-value=2.2e-14  Score=134.87  Aligned_cols=109  Identities=21%  Similarity=0.183  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004622           39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (741)
Q Consensus        39 ~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  117 (741)
                      -+..+++||++|.|++||+||++++..+ .|+..+.|||.+|++++.|..|..+|+.++.+|..+.+||.++|.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            3678999999999999999999999999 599999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004622          118 RKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (741)
Q Consensus       118 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  148 (741)
                      ...+|...++.+|.+.|++.+ ++..++.+.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~E-LkK~~a~i~  209 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIE-LKKSLARIN  209 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHH-HHHHHHHhc
Confidence            999999999999999999988 555554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.52  E-value=8.6e-13  Score=123.23  Aligned_cols=123  Identities=17%  Similarity=0.132  Sum_probs=94.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCC--hHHHHH
Q 004622          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLAN--SEKALE  572 (741)
Q Consensus       496 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~--~~~A~~  572 (741)
                      .++.++++..++++++.+|++...|..+|.++...|++++|+..|++++.+.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            556677777777777777777777777777777777777777777777777777777777777764 56566  477777


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       573 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      .++++++.+|+++.+++.+|..+...|++++|+.+|+++++..|.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            8888887777777777778888888888888888888877777766

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=4.2e-12  Score=115.31  Aligned_cols=174  Identities=16%  Similarity=0.095  Sum_probs=133.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004622          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (741)
Q Consensus       445 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  524 (741)
                      .++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+...-
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            34444455556666667777888888888777777877777777788888888888888888888888888777777776


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC---Ch
Q 004622          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QH  601 (741)
Q Consensus       525 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~  601 (741)
                      .+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++.+|   +.
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            777777777788888888888888888888888888888888888888888888888887777777887777766   45


Q ss_pred             HHHHHHHHHhhhhcCCc
Q 004622          602 KKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       602 ~~A~~~~~~al~~~~~~  618 (741)
                      .-|.++|.++++++|.+
T Consensus       208 ~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  208 ELARKYYERALKLNPKN  224 (289)
T ss_pred             HHHHHHHHHHHHhChHh
Confidence            66778888888888755

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.52  E-value=2.1e-12  Score=142.24  Aligned_cols=209  Identities=17%  Similarity=0.085  Sum_probs=178.2

Q ss_pred             HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---
Q 004622          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---  448 (741)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---  448 (741)
                      .+..-.|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++...  .++...+.+   
T Consensus        22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~   99 (906)
T PRK14720         22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW   99 (906)
T ss_pred             ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence            345567888999999999999999999999999999999999999999999999999988776655  555544444   


Q ss_pred             ----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          449 ----------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       449 ----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                                      ..+++.+|.||-.+|+.++|...|+++++.+|+++.+++++|..|... +.++|+.++.+++..
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence                            378999999999999999999999999999999999999999999988 999999999998876


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH--------HHH------------HHHHHcCChHHHHH
Q 004622          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG--------HLT------------QFYQDLANSEKALE  572 (741)
Q Consensus       513 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~la------------~~~~~~~~~~~A~~  572 (741)
                                    +...+++.++..++.+.+..+|.+.+.+.        .++            ..|...++|++++.
T Consensus       179 --------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~  244 (906)
T PRK14720        179 --------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY  244 (906)
T ss_pred             --------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence                          66667888888888888888888755422        122            56777888999999


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHH
Q 004622          573 CLQQVLYIDKRFSKAYHLRGLLLHG  597 (741)
Q Consensus       573 ~~~~al~~~p~~~~~~~~la~~~~~  597 (741)
                      +++.+++.+|.+..+...++.+|..
T Consensus       245 iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        245 ILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHHHhcCCcchhhHHHHHHHHHH
Confidence            9999999999999999999888873

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.52  E-value=1.3e-10  Score=112.92  Aligned_cols=282  Identities=12%  Similarity=-0.012  Sum_probs=173.7

Q ss_pred             chhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc
Q 004622          351 KWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQR  429 (741)
Q Consensus       351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~  429 (741)
                      ..|++..|..        ...+..+..+...-.++.-+.+.-..||++.|-.++.++-+..+++ ..+...++.+....|
T Consensus        96 ~eG~~~qAEk--------l~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          96 FEGDFQQAEK--------LLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             hcCcHHHHHH--------HHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            4455555555        3333334444444455555555666666666666666665552222 344555566666666


Q ss_pred             cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHH--HHHHHH--HHHHcCCHHHHH-
Q 004622          430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADI--LHERGI--VNFKFKDFNAAV-  503 (741)
Q Consensus       430 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~--~~~la~--~~~~~~~~~~A~-  503 (741)
                      ++..|.....++++..|.++.+......+|...|++......+.+.-+..--+ .+.  +-..+.  ++.+.++-..+. 
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            66666666666666666666666666666666666666666555554432211 111  111110  011111111111 


Q ss_pred             --HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622          504 --EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (741)
Q Consensus       504 --~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (741)
                        .+++..-..-..++.....++.-+...|++++|.++.+++++..-+.. ....++  ...-+++..=++..++.++..
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhC
Confidence              123222222334566677778888889999999999999888765432 211111  234578888888888889999


Q ss_pred             cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRL  646 (741)
Q Consensus       582 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  646 (741)
                      |+++..+..+|.++.+.+.|.+|..+|+.+++..|+.  .. +..+|.++.++|+..+|-.+++.
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~-~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SD-YAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hh-HHHHHHHHHHcCChHHHHHHHHH
Confidence            9999999999999999999999999999999888874  55 78899999999999988866554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=2e-13  Score=118.77  Aligned_cols=114  Identities=21%  Similarity=0.206  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC------ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004622           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSY------EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG  110 (741)
Q Consensus        37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g  110 (741)
                      -..+.+++++|.+|+|++|..-|+.||++.|      ...+|.|||.|.++++.++.|+.+|.++|+++|.+.+|+.+++
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            4457999999999999999999999999662      2344899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622          111 CAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      .+|.++.++++|+..|.+.++++|.+.. +..++..+...+
T Consensus       176 eayek~ek~eealeDyKki~E~dPs~~e-ar~~i~rl~~~i  215 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKILESDPSRRE-AREAIARLPPKI  215 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCcchHH-HHHHHHhcCHHH
Confidence            9999999999999999999999999998 887777666555

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.51  E-value=3.6e-13  Score=129.82  Aligned_cols=294  Identities=16%  Similarity=0.140  Sum_probs=216.4

Q ss_pred             HHhhhhHHHhcCChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622          308 HDKLSSDSASLNDSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF  383 (741)
Q Consensus       308 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  383 (741)
                      +...|..+++.|++..-+..|+.+++....+..    .+..++.+|+-.++|.+|++.  ....+.+.+.....-..+..
T Consensus        20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y--H~hDltlar~lgdklGEAKs   97 (639)
T KOG1130|consen   20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY--HTHDLTLARLLGDKLGEAKS   97 (639)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh--hhhhHHHHHHhcchhccccc
Confidence            344589999999999999999999998877655    566789999999999999884  22333555666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccc--------------------HHHHHHH
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPM------YPEALIGRGTARAFQRE--------------------LEAAISD  437 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~  437 (741)
                      --++|..+-..|.|++|+.++.+-+.....      ...+++++|.+|...|+                    ++.|.++
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f  177 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF  177 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence            678999999999999999999988765322      25789999999988774                    3345555


Q ss_pred             HHHHHHhCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 004622          438 FTEAIQSNPS------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVED  505 (741)
Q Consensus       438 ~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~  505 (741)
                      |..-+++...      ...++-++|+.|+-.|+|+.|+..-+.-+.+....      -.++.++|.++.-.|+++.|+++
T Consensus       178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh  257 (639)
T KOG1130|consen  178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH  257 (639)
T ss_pred             HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence            5554444322      23467788888888999999988877666654322      34788889999999999999999


Q ss_pred             HHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHH
Q 004622          506 LSACVKLD----KE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALEC  573 (741)
Q Consensus       506 ~~~al~~~----p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~  573 (741)
                      |+..+.+.    ..  .....+.+|..|.-..++++||.++.+-+.+..+      ...+++.||..+...|..++|+.+
T Consensus       258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f  337 (639)
T KOG1130|consen  258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF  337 (639)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence            98876542    22  2456778899999999999999998887766432      356788889999999999999888


Q ss_pred             HHHHHhhC-----cc-cHHHHHHHHHHHHHCCChHH
Q 004622          574 LQQVLYID-----KR-FSKAYHLRGLLLHGLGQHKK  603 (741)
Q Consensus       574 ~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~  603 (741)
                      .++.++..     |. ...+..++...-..+|..+.
T Consensus       338 ae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  338 AELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            88777642     21 23455666666666665443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.51  E-value=2.3e-12  Score=120.31  Aligned_cols=124  Identities=19%  Similarity=0.261  Sum_probs=91.4

Q ss_pred             cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 004622          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVE  504 (741)
Q Consensus       428 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~  504 (741)
                      .++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            556677777777777777777777777777777777777777777777777777777777777753 55565  477777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (741)
Q Consensus       505 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  551 (741)
                      .++++++.+|+++.+++.+|..+...|++++|+.+++++++..|.+.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            77777777777777777777777777777777777777777766543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=7.6e-11  Score=107.27  Aligned_cols=180  Identities=19%  Similarity=0.148  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  460 (741)
                      ...+-....+.+..|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+...+...-.+..
T Consensus        52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            34444556667778888888888888888888888888888888888888888888888888888888888887777778


Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 004622          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAE  537 (741)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~  537 (741)
                      .+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-..|.++..+..+|.+++-+|   ++.-|.
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888877665   466788


Q ss_pred             HHHHHHHHhCcccHHHHHHHHHH
Q 004622          538 EAHLKAIQLDRNFLEAWGHLTQF  560 (741)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~  560 (741)
                      ++|.++++++|.+..+++.+-.+
T Consensus       212 kyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHhChHhHHHHHHHHHH
Confidence            88888888888777776655444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.51  E-value=3.2e-12  Score=117.59  Aligned_cols=181  Identities=17%  Similarity=0.149  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL  476 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  476 (741)
                      ...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            334666666777788998888 8999999999999999999999888899998888889999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 004622          477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (741)
Q Consensus       477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  556 (741)
                      ...|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHH
Q 004622          557 LTQFYQDLANSEKALECLQQVL  578 (741)
Q Consensus       557 la~~~~~~~~~~~A~~~~~~al  578 (741)
                      ++.+....|++.+|.....+-+
T Consensus       208 LAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         208 LALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHhhcCChHHHHhhccccc
Confidence            9999999999999987765443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.49  E-value=2.8e-13  Score=130.59  Aligned_cols=283  Identities=18%  Similarity=0.142  Sum_probs=212.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHH
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGEAWKRR  455 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~l  455 (741)
                      .-|.-+++.|++...+.+|+.+++...++    ..+|..+|..|+.+++|++|+++-..-+-+      .-......-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            34777889999999999999999987776    356788999999999999999885443322      22234456789


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 004622          456 GQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSAC  509 (741)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a  509 (741)
                      |+.+...|.|++|+.+..+-+.+...      ...+++++|.+|...|+                    ++.|.++|..-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887765422      35789999999987764                    34456666665


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622          510 VKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV  577 (741)
Q Consensus       510 l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (741)
                      +++....      ..++-++|..|+-+|+|+.|+..-+.-+.+....      ..++.++|.++.-.|+++.|+++|+..
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            5553322      2567788999999999999999888877765443      358899999999999999999999998


Q ss_pred             HhhCc------ccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC--c---hHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622          578 LYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP--H---LIWNLTRWRNLCFNAWPFIRRRLLCTRL  646 (741)
Q Consensus       578 l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~  646 (741)
                      +.+.-      ..+...+.+|..|.-..++++|+.++++-+.+..+  +   ...+ ++.+|..+..+|..++|+.+...
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra-cwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA-CWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhhhhHHHHHHHHHH
Confidence            76532      23566889999999999999999999998765321  1   1234 88999999999999999965544


Q ss_pred             hc-----cCCc----ccchhhHHHHhcCCCch
Q 004622          647 LK-----STVS----FAGLTLMEILIPSSRNI  669 (741)
Q Consensus       647 ~~-----~~~~----~~~~~l~~~~~~~g~~~  669 (741)
                      ..     -.++    ....+|.......|..+
T Consensus       341 hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  341 HLRSSLEVNDTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence            21     1111    24455555555555533

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.47  E-value=4.9e-12  Score=139.44  Aligned_cols=206  Identities=11%  Similarity=-0.095  Sum_probs=179.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----
Q 004622          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----  483 (741)
Q Consensus       409 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----  483 (741)
                      ..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++...  .++...+.+.     
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            357888999999999999999999999999999999999999999999999999887777665  5555555444     


Q ss_pred             --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 004622          484 --------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (741)
Q Consensus       484 --------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  549 (741)
                                    .+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+++..   
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                          89999999999999999999999999999999999999999999999 999999999999876   


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH--------------------HHHHHHHHHHCCChHHHHHHHH
Q 004622          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------YHLRGLLLHGLGQHKKAIKDLS  609 (741)
Q Consensus       550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~  609 (741)
                                 +...++|..+..++.+.+..+|++.+.                    +.-+=..|...++|++++..++
T Consensus       179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence                       566678899999999999888876443                    2223377888899999999999


Q ss_pred             HhhhhcCCchHHHHHHHHHHHHHh
Q 004622          610 SGSRTMMPHLIWNLTRWRNLCFNA  633 (741)
Q Consensus       610 ~al~~~~~~~~~~~~~~la~~~~~  633 (741)
                      .+++.+|.| .++ ...++.||..
T Consensus       248 ~iL~~~~~n-~~a-~~~l~~~y~~  269 (906)
T PRK14720        248 KILEHDNKN-NKA-REELIRFYKE  269 (906)
T ss_pred             HHHhcCCcc-hhh-HHHHHHHHHH
Confidence            999999999 666 8888888863

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.47  E-value=5.6e-09  Score=107.03  Aligned_cols=523  Identities=14%  Similarity=0.109  Sum_probs=286.9

Q ss_pred             hhhhhhhHHHHHHHhHHHHHHHHHHH--hcCCHHHHHHHHHHHHh-ccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 004622           22 EIDELVRVDSVMASAITARIELAKLC--SLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL   98 (741)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~Ai~~~~~al~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   98 (741)
                      .+.++++-.++--.+...|....+-.  -..-|..=-.+|++++. +..-++.|..-....+++|+...-...|+++|..
T Consensus        52 al~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALra  131 (835)
T KOG2047|consen   52 ALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRA  131 (835)
T ss_pred             HHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            34456666666555555554433321  22334444467777766 4466788888888889999999999999999988


Q ss_pred             CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhc
Q 004622           99 DPTL--LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSE  176 (741)
Q Consensus        99 ~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (741)
                      -|--  ...+-..-.-...-|-++-++..|++-|+++|...+.....|........+.+...                  
T Consensus       132 LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la------------------  193 (835)
T KOG2047|consen  132 LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA------------------  193 (835)
T ss_pred             CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH------------------
Confidence            7733  22343444455666778899999999999999886644444433333332222111                  


Q ss_pred             cccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCC
Q 004622          177 SGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNG  256 (741)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (741)
                       .+.+++....-.          ..+...-|.+.+......|.....+.          .+.-       +.+       
T Consensus       194 -~vln~d~f~sk~----------gkSn~qlw~elcdlis~~p~~~~sln----------vdai-------iR~-------  238 (835)
T KOG2047|consen  194 -TVLNQDEFVSKK----------GKSNHQLWLELCDLISQNPDKVQSLN----------VDAI-------IRG-------  238 (835)
T ss_pred             -HhcCchhhhhhc----------ccchhhHHHHHHHHHHhCcchhcccC----------HHHH-------HHh-------
Confidence             000000000000          00000001111111111111111000          0000       000       


Q ss_pred             CCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCC
Q 004622          257 SSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDN  336 (741)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p  336 (741)
                                                             ...+-.......+-.|+..|.+.|.|++|...|++++..--
T Consensus       239 ---------------------------------------gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~  279 (835)
T KOG2047|consen  239 ---------------------------------------GIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM  279 (835)
T ss_pred             ---------------------------------------hcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence                                                   00001112334666789999999999999999999997542


Q ss_pred             CCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 004622          337 KSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE  416 (741)
Q Consensus       337 ~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  416 (741)
                      . ..-...+-..|.   .+++..-.+...   .............+.-+.++..-.-......  -.=.-++..+|++..
T Consensus       280 t-vrDFt~ifd~Ya---~FEE~~~~~~me---~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~--~lNsVlLRQn~~nV~  350 (835)
T KOG2047|consen  280 T-VRDFTQIFDAYA---QFEESCVAAKME---LADEESGNEEDDVDLELHMARFESLMNRRPL--LLNSVLLRQNPHNVE  350 (835)
T ss_pred             e-hhhHHHHHHHHH---HHHHHHHHHHHh---hhhhcccChhhhhhHHHHHHHHHHHHhccch--HHHHHHHhcCCccHH
Confidence            2 111222222222   222221110000   0000001111122222222222111111110  011223456777777


Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHH
Q 004622          417 ALIGRGTARAFQRELEAAISDFTEAIQS-NPS-----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADIL  486 (741)
Q Consensus       417 ~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~  486 (741)
                      .|.....+  ..|+..+-+..|..++.. +|.     ....|..+|..|...|+.+.|...|+++.+..-..    ..+|
T Consensus       351 eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw  428 (835)
T KOG2047|consen  351 EWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW  428 (835)
T ss_pred             HHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence            76655444  356677777777777653 443     23567777888888888888888888877764222    4567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622          487 HERGIVNFKFKDFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (741)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  548 (741)
                      ..-|..-.+..+++.|+++.+.+...-..                  +..+|..++......|-++.....|++++++.-
T Consensus       429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri  508 (835)
T KOG2047|consen  429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI  508 (835)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence            77777777777788888877777653111                  123455566666667777777777777777776


Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--ccHHHHHH---HHHHHHHCCChHHHHHHHHHhhhhcCCchHHHH
Q 004622          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHL---RGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNL  623 (741)
Q Consensus       549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  623 (741)
                      -.|....+.|..+....-++++.+.|++.+.+.+  .-.++|..   ....-+.-...+.|...|++|++..|......+
T Consensus       509 aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti  588 (835)
T KOG2047|consen  509 ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI  588 (835)
T ss_pred             CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            6677777777777777777888888888777653  33333332   222223334667788888888877776555565


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          624 TRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       624 ~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                      +...+..-...|--..|+..|+..
T Consensus       589 yLlYA~lEEe~GLar~amsiyera  612 (835)
T KOG2047|consen  589 YLLYAKLEEEHGLARHAMSIYERA  612 (835)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH
Confidence            666677777777777777555543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.47  E-value=2.1e-12  Score=133.95  Aligned_cols=224  Identities=16%  Similarity=0.119  Sum_probs=199.3

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la  456 (741)
                      -|........++..+...|-..+|+.+|++        +..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG  464 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG  464 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence            344455667899999999999999999997        56778889999999999999999999998 677788888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  536 (741)
                      .+.....-|++|.++.+..      +..+...+|......++|.++.++++..++++|-....|+.+|.+..+.+++..|
T Consensus       465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            8876665566666655442      4557778888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      ..+|..++..+|++..+|++++.+|...++-.+|...++++++.+-++..+|.+.-.+....|.+++|++.+.+.+...
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999998899999999999999999999999999997653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.45  E-value=2.3e-11  Score=133.68  Aligned_cols=198  Identities=10%  Similarity=-0.026  Sum_probs=147.9

Q ss_pred             CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622          338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA  417 (741)
Q Consensus       338 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~  417 (741)
                      ++..+..+-.+....|..+++..+.-.......              -.-|.+    ....+++.-.......+|.++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   88 (694)
T PRK15179         27 GPTILDLLEAALAEPGESEEAGRELLQQARQVL--------------ERHAAV----HKPAAALPELLDYVRRYPHTELF   88 (694)
T ss_pred             CcHHHhHHHHHhcCcccchhHHHHHHHHHHHHH--------------HHhhhh----cchHhhHHHHHHHHHhccccHHH
Confidence            455555555566666766666654222111111              111222    22333344444445567888888


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (741)
Q Consensus       418 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (741)
                      +..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..++.+|.++...|
T Consensus        89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g  168 (694)
T PRK15179         89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG  168 (694)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 004622          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA  553 (741)
Q Consensus       498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  553 (741)
                      ++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+-...
T Consensus       169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            88888888888888888888888888888888888888888888888876443333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.1e-12  Score=126.25  Aligned_cols=118  Identities=22%  Similarity=0.235  Sum_probs=101.8

Q ss_pred             HHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cc-C--------------ChhhHHHHHHHHHhhhcHHHHHHHHHHHH
Q 004622           33 MASAITARIELAKLCSLRNWSKAIRILDSLLA-QS-Y--------------EIQDICNRAFCYSQLELHKHVIRDCDKAL   96 (741)
Q Consensus        33 ~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~-~~-~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al   96 (741)
                      .+.+-..|..++.+|+.|+|..|+..|++|+. ++ .              -..++.|+|.||++++.|.+|+..|+++|
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44556677889999999999999999999986 22 0              11226899999999999999999999999


Q ss_pred             HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622           97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus        97 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      .++|+|.+|+|++|.++..+|+++.|+..|+++++++|+|.. +..-+..+....
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka-~~~el~~l~~k~  338 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA-ARAELIKLKQKI  338 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988 666665554444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.43  E-value=3.4e-12  Score=126.10  Aligned_cols=256  Identities=16%  Similarity=0.073  Sum_probs=192.7

Q ss_pred             HHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004622          347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA  426 (741)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  426 (741)
                      +-+|-.|+|..++++       .. ......+......+.+.++++..|+++..+.....   ..+....+...++..+.
T Consensus         9 rn~fy~G~Y~~~i~e-------~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~   77 (290)
T PF04733_consen    9 RNQFYLGNYQQCINE-------AS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLS   77 (290)
T ss_dssp             HHHHCTT-HHHHCHH-------HH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHC
T ss_pred             HHHHHhhhHHHHHHH-------hh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHh
Confidence            356688999999974       22 22233334556777889999999998877655533   22333456666776665


Q ss_pred             HcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622          427 FQRELEAAISDFTEAIQSN--PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (741)
Q Consensus       427 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (741)
                      ..++.+.++..+...+...  +.++......|.++...|++++|++.+.+.     .+.+.......++..+++++.|.+
T Consensus        78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k  152 (290)
T PF04733_consen   78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEK  152 (290)
T ss_dssp             TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHH
Confidence            5556677777666554332  235566677788888899999999988754     568888888999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc
Q 004622          505 DLSACVKLDKENKSAYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (741)
Q Consensus       505 ~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  582 (741)
                      .++.+-+.+.+..-+...-+++.+..|  .+.+|...|++..+..+.++..++.++.++..+|++++|...+.+++..+|
T Consensus       153 ~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  153 ELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            999998888777766666677777666  589999999998888888899999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHCCCh-HHHHHHHHHhhhhcCCc
Q 004622          583 RFSKAYHLRGLLLHGLGQH-KKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~  618 (741)
                      ++++++.+++.+...+|+. +.+.+++.+....+|++
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            9999999999999999998 66778888888888987

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.42  E-value=4e-11  Score=131.79  Aligned_cols=144  Identities=12%  Similarity=-0.002  Sum_probs=107.1

Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (741)
Q Consensus       442 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  521 (741)
                      ....|.+++++..+|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..+++
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            34466677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (741)
Q Consensus       522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  585 (741)
                      .+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            7777777777777777777777777777777777777777777777777777777776654433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.42  E-value=3.9e-12  Score=125.69  Aligned_cols=257  Identities=14%  Similarity=0.053  Sum_probs=195.3

Q ss_pred             HHHhcCChhhHHHHHHHhhccCC-CCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHH
Q 004622          314 DSASLNDSNTNSESYSKSSISDN-KSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV  392 (741)
Q Consensus       314 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  392 (741)
                      ..|-.|+|..++..++ ....+| ........+.+++..+|++...+.+           +....+....+...++..+.
T Consensus        10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e-----------i~~~~~~~l~av~~la~y~~   77 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE-----------IKKSSSPELQAVRLLAEYLS   77 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH-----------S-TTSSCCCHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH-----------hccCCChhHHHHHHHHHHHh
Confidence            4566899999998777 333332 2444667788888889988766653           22333444555566666665


Q ss_pred             HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 004622          393 NEGKYASAISIFDQILKED--PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (741)
Q Consensus       393 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~  470 (741)
                      ..++-+.++..++..+...  +.++......|.++...|++++|++.+.+.     .+.++......++..+++++.|.+
T Consensus        78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k  152 (290)
T PF04733_consen   78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEK  152 (290)
T ss_dssp             TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHH
Confidence            5567777777776655332  234566677788888999999999988764     567888888999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622          471 DLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (741)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  548 (741)
                      .++.+.+.+.+..-+....+++.+..|  .+.+|...|++.....+.++..+..++.++..+|+|++|...+.+++..+|
T Consensus       153 ~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  153 ELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            999999988777666666666766666  699999999999888888999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCcccHHH
Q 004622          549 NFLEAWGHLTQFYQDLANS-EKALECLQQVLYIDKRFSKA  587 (741)
Q Consensus       549 ~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~  587 (741)
                      .++.++.+++.+....|+. +.+.+++.+....+|+++.+
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            9999999999999999998 66778888888889987654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=1.4e-09  Score=101.05  Aligned_cols=419  Identities=14%  Similarity=0.050  Sum_probs=260.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (741)
Q Consensus        43 ~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  121 (741)
                      +-.+++..+|..||++.+.-.+.+ .+-..+..+|.||.+..+|..|-..++..-.+.|...+..+..+..+.+.+.+.+
T Consensus        17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            556788999999999999999988 4777799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccC
Q 004622          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (741)
Q Consensus       122 A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  201 (741)
                      |+........    ++. +..-.-.+...+...       +++.                 +.....+.           
T Consensus        97 ALrV~~~~~D----~~~-L~~~~lqLqaAIkYs-------e~Dl-----------------~g~rsLve-----------  136 (459)
T KOG4340|consen   97 ALRVAFLLLD----NPA-LHSRVLQLQAAIKYS-------EGDL-----------------PGSRSLVE-----------  136 (459)
T ss_pred             HHHHHHHhcC----CHH-HHHHHHHHHHHHhcc-------cccC-----------------cchHHHHH-----------
Confidence            9987766532    233 221111111111000       0000                 00000000           


Q ss_pred             CCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCcc
Q 004622          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (741)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (741)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (459)
T KOG4340|consen  137 --------------------------------------------------------------------------------  136 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHH
Q 004622          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (741)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~  361 (741)
                                      ....+..++.....|-..|+.|++++|++-|+.+++...-++...++++.++++.+++..|.+.
T Consensus       137 ----------------Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~  200 (459)
T KOG4340|consen  137 ----------------QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH  200 (459)
T ss_pred             ----------------hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence                            0001245566777888999999999999999999999988999999999999999999998884


Q ss_pred             HHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (741)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  441 (741)
                      ...+.    ++-....|.-.-....-|.--...|+   -+..-..++      .+++...+.++++.++++.|.+.+...
T Consensus       201 iSEIi----eRG~r~HPElgIGm~tegiDvrsvgN---t~~lh~Sal------~eAfNLKaAIeyq~~n~eAA~eaLtDm  267 (459)
T KOG4340|consen  201 ISEII----ERGIRQHPELGIGMTTEGIDVRSVGN---TLVLHQSAL------VEAFNLKAAIEYQLRNYEAAQEALTDM  267 (459)
T ss_pred             HHHHH----HhhhhcCCccCccceeccCchhcccc---hHHHHHHHH------HHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence            22211    11122222211000000000001111   111111121      456677788888999998887765432


Q ss_pred             HHhC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 004622          442 IQSN--PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK--  517 (741)
Q Consensus       442 l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--  517 (741)
                      --..  .-+|..+.+++..- ..+++.+...-+.-.+.++|-..+.+-++-.+|.+..-|+-|-..+.+    +|...  
T Consensus       268 PPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk  342 (459)
T KOG4340|consen  268 PPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYK  342 (459)
T ss_pred             CCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHH
Confidence            1111  12345566666543 346677778888888888998788888888889888877777666543    44332  


Q ss_pred             ---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHH--HcC---ChHHHHHHHHHHHhhCcccHHH
Q 004622          518 ---SAYTYLGLALS-SIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQ--DLA---NSEKALECLQQVLYIDKRFSKA  587 (741)
Q Consensus       518 ---~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~--~~~---~~~~A~~~~~~al~~~p~~~~~  587 (741)
                         ...+.+-..++ ..-..++|.+-+...-....+   -+..++ .+..  ..+   ....|++.|+.++++.   ..+
T Consensus       343 ~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~---kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPV  416 (459)
T KOG4340|consen  343 FLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE---KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPV  416 (459)
T ss_pred             HhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHH
Confidence               22233322222 234455555554443322111   111111 1111  111   1234555555555542   456


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622          588 YHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW  621 (741)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  621 (741)
                      ....++++....+|..+.+.|....+.-.++..|
T Consensus       417 lMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W  450 (459)
T KOG4340|consen  417 LMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW  450 (459)
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence            7778888999999999999998888876665444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.39  E-value=1.1e-11  Score=109.47  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622          472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (741)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  551 (741)
                      +++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+++
T Consensus         6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~   85 (135)
T TIGR02552         6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP   85 (135)
T ss_pred             HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  583 (741)
                      ..++.+|.++...|++++|+..|+++++.+|+
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        86 RPYFHAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            44444444444444444444444444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=1.4e-10  Score=107.63  Aligned_cols=286  Identities=12%  Similarity=0.070  Sum_probs=219.3

Q ss_pred             HHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 004622          314 DSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN  393 (741)
Q Consensus       314 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  393 (741)
                      .+.+..+|..||+++..-.+..|.+...+..++.||+...++..|..        |++.+....|......+..+..+++
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~--------CYeQL~ql~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAE--------CYEQLGQLHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhChHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999998        9999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 004622          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS  473 (741)
Q Consensus       394 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  473 (741)
                      .+.+..|+.....+...+.-...++-..+.+.+..+++..+....++.-  ..+..+...+.|.+.++.|+++.|++-|+
T Consensus        91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFq  168 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQ  168 (459)
T ss_pred             hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHH
Confidence            9999999988876654322223555566667777777777766555431  12567788889999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHH
Q 004622          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----DKEN-------------------------KSAYTYLG  524 (741)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la  524 (741)
                      .+++...-++-+-++++.++++.|++..|+++..+.++.    +|.-                         ..+....+
T Consensus       169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa  248 (459)
T KOG4340|consen  169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA  248 (459)
T ss_pred             HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence            999998888888999999999999999999988877654    3321                         13345567


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChH
Q 004622          525 LALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (741)
Q Consensus       525 ~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  602 (741)
                      -++++.|+++.|.+.+...--...  -+|..+.+++..-. .+++-+...-+.-.+.++|--++...++-.+|++..-|+
T Consensus       249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~  327 (459)
T KOG4340|consen  249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD  327 (459)
T ss_pred             hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence            778888888888776654322211  13556666665432 356667777777778888877788888888888887777


Q ss_pred             HHHHHHHH
Q 004622          603 KAIKDLSS  610 (741)
Q Consensus       603 ~A~~~~~~  610 (741)
                      -|...+-+
T Consensus       328 lAADvLAE  335 (459)
T KOG4340|consen  328 LAADVLAE  335 (459)
T ss_pred             HHHHHHhh
Confidence            77665543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.38  E-value=1.6e-11  Score=108.50  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (741)
Q Consensus       403 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (741)
                      .|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (741)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  517 (741)
                      +..++.+|.++...|++++|+..++++++.+|++.
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            55555555555555555555555555555555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.37  E-value=2.4e-11  Score=126.21  Aligned_cols=221  Identities=17%  Similarity=0.152  Sum_probs=196.1

Q ss_pred             CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622          338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA  417 (741)
Q Consensus       338 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~  417 (741)
                      .......++..+...|-...|..        .+++        ...|-....+|...|+..+|..+..+-++ .|+++..
T Consensus       397 ~Wq~q~~laell~slGitksAl~--------I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~l  459 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALV--------IFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRL  459 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHH--------HHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchh
Confidence            44466788899999999999988        3333        33455778899999999999999999998 5666899


Q ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (741)
Q Consensus       418 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (741)
                      |..+|.+.....-|++|.++.+..      +..+...+|......++|.++..+++..++++|-....|+.+|.+..+.+
T Consensus       460 yc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  460 YCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE  533 (777)
T ss_pred             HHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence            999999988887788887777664      34477778888888999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (741)
Q Consensus       498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (741)
                      +++.|.++|..++.++|++..+|.+++..|...++-.+|...+.++++.+-++..+|-+...+..+.|.+++|++.|.+.
T Consensus       534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             HhhC
Q 004622          578 LYID  581 (741)
Q Consensus       578 l~~~  581 (741)
                      +.+.
T Consensus       614 l~~~  617 (777)
T KOG1128|consen  614 LDLR  617 (777)
T ss_pred             HHhh
Confidence            8763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.37  E-value=2.2e-09  Score=127.31  Aligned_cols=374  Identities=12%  Similarity=0.026  Sum_probs=261.8

Q ss_pred             hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc-cCCccHHH
Q 004622          305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK-SKSISVDF  383 (741)
Q Consensus       305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  383 (741)
                      .......+..+...|++.+|+..+..+-... .-.......+......|++.....        ....+.. .....+..
T Consensus       341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~-~~~~ll~~~a~~l~~~g~~~~l~~--------~l~~lp~~~~~~~~~l  411 (903)
T PRK04841        341 PELHRAAAEAWLAQGFPSEAIHHALAAGDAQ-LLRDILLQHGWSLFNQGELSLLEE--------CLNALPWEVLLENPRL  411 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHhHHHHHhcCChHHHHH--------HHHhCCHHHHhcCcch
Confidence            4455667788888999999988766553221 112233344555556666655444        2222211 11222334


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----  449 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----  449 (741)
                      ....+..+...|++++|...+..+....+.         .......++.++...|++++|...+++++...+...     
T Consensus       412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  491 (903)
T PRK04841        412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence            567788889999999999999988764321         134455678888999999999999999988544322     


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q 004622          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--------  515 (741)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------  515 (741)
                      .+...+|.++...|++++|...+.+++......      ..++..+|.++...|++++|...+.+++.....        
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            356778889999999999999999998764321      245677899999999999999999999885221        


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc---HHH
Q 004622          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKA  587 (741)
Q Consensus       516 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~  587 (741)
                      ....+..+|.++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++..+.+..   ...
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            1234567888999999999999999999876321     34566778999999999999999999997753321   111


Q ss_pred             H----HHHHHHHHHCCChHHHHHHHHHhhhhcCCc--hHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc-----CCc----
Q 004622          588 Y----HLRGLLLHGLGQHKKAIKDLSSGSRTMMPH--LIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS-----TVS----  652 (741)
Q Consensus       588 ~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~----  652 (741)
                      .    ......+...|+.+.|..++.......+..  .....+..++.++...|++++|...+.....     +.+    
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a  731 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN  731 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            1    112244556899999999988776533222  1112246789999999999999866555322     111    


Q ss_pred             ccchhhHHHHhcCCCchhHhhhHHHHHhhhhhccc
Q 004622          653 FAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSL  687 (741)
Q Consensus       653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  687 (741)
                      .....++..+...|+..+|...+..+........+
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence            25667789999999999999999998876644444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.37  E-value=1.1e-11  Score=127.48  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=103.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004622           40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (741)
Q Consensus        40 ~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  118 (741)
                      ..++..+|..|+|++|+..|++||+++ .+..+++++|.+|.++|++++|+.++++++.++|+++.+++++|.++..+|+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            467889999999999999999999999 7788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622          119 KEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      +++|+..|++++.++|++.. +...+..+....
T Consensus        86 ~~eA~~~~~~al~l~P~~~~-~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSR-FTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHH
Confidence            99999999999999999999 766666665444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.36  E-value=6.4e-09  Score=123.29  Aligned_cols=268  Identities=15%  Similarity=0.020  Sum_probs=128.6

Q ss_pred             hhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHH
Q 004622          311 LSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA  390 (741)
Q Consensus       311 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  390 (741)
                      +|..+...|++++|...+++++...|.......                                     ......+|.+
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------------~~a~~~lg~~  500 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELPLTWYYSR-------------------------------------IVATSVLGEV  500 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH-------------------------------------HHHHHHHHHH
Confidence            466677789999999999999875443221000                                     0011234444


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------CcHHHHHHHH
Q 004622          391 QVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAWKRRG  456 (741)
Q Consensus       391 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~la  456 (741)
                      +...|++++|...+++++......      ..++..+|.++...|++++|...+++++....        .....+..+|
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            555555555555555554432111      12334445555555555555555555444311        0112233445


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH----HHH
Q 004622          457 QARAALGESVEAIQDLSKALEFEPN-----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYT----YLG  524 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~----~la  524 (741)
                      .++...|++++|...+.+++.....     ....+..+|.++...|++++|...+.++....+..   .....    ...
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  660 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL  660 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence            5555555555555555555443211     12234445555555555555555555554432111   00000    011


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCc------ccHHHHHHHHHH
Q 004622          525 LALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLL  594 (741)
Q Consensus       525 ~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~  594 (741)
                      ..+...|+.+.|..++.......+...    ..+..++.++...|++++|...+++++....      ....++..+|.+
T Consensus       661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a  740 (903)
T PRK04841        661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL  740 (903)
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            233335555555555544333221111    1133455556666666666666666554321      123345556666


Q ss_pred             HHHCCChHHHHHHHHHhhhhc
Q 004622          595 LHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~  615 (741)
                      +...|+.++|...+.+++++.
T Consensus       741 ~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        741 YWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHh
Confidence            666666666666666666554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.35  E-value=1.9e-07  Score=96.13  Aligned_cols=323  Identities=10%  Similarity=-0.007  Sum_probs=212.3

Q ss_pred             ccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          333 ISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI-----SVDFRLSRGIAQVNEGKYASAISIFDQI  407 (741)
Q Consensus       333 ~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~a  407 (741)
                      ..+|+++.-+.....++  .|+..+.+..       ..+.+...+|.     -...|...|..|...|+.+.|..+|+++
T Consensus       343 RQn~~nV~eW~kRV~l~--e~~~~~~i~t-------yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka  413 (835)
T KOG2047|consen  343 RQNPHNVEEWHKRVKLY--EGNAAEQINT-------YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA  413 (835)
T ss_pred             hcCCccHHHHHhhhhhh--cCChHHHHHH-------HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence            44566666555554443  4444444443       22222222222     2357788888888888899998888888


Q ss_pred             HHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCh
Q 004622          408 LKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------------------AGEAWKRRGQARAALGES  465 (741)
Q Consensus       408 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------------------~~~~~~~la~~~~~~~~~  465 (741)
                      ++..-..    ..+|..-|..-.+..+++.|+++.+++...-..                  ...+|..++......|-+
T Consensus       414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF  493 (835)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            8754322    467777787777888888888888887653211                  224577777777788888


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHH---HHHHHHcCCHHHHHHHH
Q 004622          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYL---GLALSSIGEYKKAEEAH  540 (741)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l---a~~~~~~~~~~~A~~~~  540 (741)
                      +.-...|++.+.+.--.|....+.|..+....-++++.+.|++.+.+.+  .-.+.|...   ...-+.....+.|...|
T Consensus       494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            8888888888888777888888888888888888888888888888753  333444432   22233445688888889


Q ss_pred             HHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHH-----HCCChHHHHHHHHHhhh
Q 004622          541 LKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH-----GLGQHKKAIKDLSSGSR  613 (741)
Q Consensus       541 ~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  613 (741)
                      +++++..|..  ...+...+.+-..-|--..|+..|+++-..-+..  -.+.+=.+|.     ..| ...-...|++|++
T Consensus       574 EqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yG-v~~TR~iYekaIe  650 (835)
T KOG2047|consen  574 EQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIE  650 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH
Confidence            9998888743  2345556666667788888888888876543321  1111111221     112 2234567888888


Q ss_pred             hcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccC-Cc----ccchhhHHHHhcCCC
Q 004622          614 TMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKST-VS----FAGLTLMEILIPSSR  667 (741)
Q Consensus       614 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~l~~~~~~~g~  667 (741)
                      .-|+.....+....+..-.++|..+.|..+|.....- +|    ..+-+--++-.+.|+
T Consensus       651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN  709 (835)
T ss_pred             hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence            8887755666778889999999999998766654322 23    244444556667777

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.33  E-value=5.8e-11  Score=102.23  Aligned_cols=96  Identities=14%  Similarity=0.074  Sum_probs=91.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (741)
Q Consensus        43 ~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  121 (741)
                      +..++..|+++.|...|+-...++ .+...|+++|.|+-.+|+|++|+..|.+++.++|+++.+++..|.|++.+|+.+.
T Consensus        42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence            677899999999999999999999 7889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChH
Q 004622          122 ALSVWEKGYEHALHQSA  138 (741)
Q Consensus       122 A~~~~~~al~l~p~~~~  138 (741)
                      |+..|+.++...-+++.
T Consensus       122 A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        122 AIKALKAVVRICGEVSE  138 (157)
T ss_pred             HHHHHHHHHHHhccChh
Confidence            99999999999855555

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=2.8e-11  Score=113.58  Aligned_cols=118  Identities=26%  Similarity=0.362  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Q 004622          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (741)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  564 (741)
                      -+..-|.-+++.++|.+|+..|.++|+++|+++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|..+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            34555666666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChH
Q 004622          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (741)
Q Consensus       565 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  602 (741)
                      |++++|++.|++++.++|++...+.+|..+-.++++..
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            77777777777777777777766666666666655554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.31  E-value=9.2e-11  Score=101.03  Aligned_cols=102  Identities=15%  Similarity=0.059  Sum_probs=70.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHH
Q 004622          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (741)
Q Consensus       514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  593 (741)
                      ++.....+.+|..+...|++++|...|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            45556666666666677777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHCCChHHHHHHHHHhhhhc
Q 004622          594 LLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      ++...|+.+.|.+.|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            7777777777777777666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.26  E-value=2.3e-09  Score=107.32  Aligned_cols=156  Identities=22%  Similarity=0.168  Sum_probs=130.9

Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004622          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (741)
Q Consensus       446 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  525 (741)
                      |....+++..+..++..|++++|+..+...+...|+|+..+...+.+++..++.++|.+.+++++.++|..+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHH
Q 004622          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI  605 (741)
Q Consensus       526 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  605 (741)
                      .+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|..                 ..+..+...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence            88888888888888888888888888888888888888887665543                 4556677788888888


Q ss_pred             HHHHHhhhhcCCc
Q 004622          606 KDLSSGSRTMMPH  618 (741)
Q Consensus       606 ~~~~~al~~~~~~  618 (741)
                      ..+.++.+....+
T Consensus       446 ~~l~~A~~~~~~~  458 (484)
T COG4783         446 IFLMRASQQVKLG  458 (484)
T ss_pred             HHHHHHHHhccCC
Confidence            8888887765333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.22  E-value=4.5e-09  Score=105.26  Aligned_cols=154  Identities=20%  Similarity=0.158  Sum_probs=141.2

Q ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004622          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG  490 (741)
Q Consensus       411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  490 (741)
                      .|....+++..+..++..|++++|...++..+...|+|+..+...+.++...|+..+|.+.+++++.++|..+....++|
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            37778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Q 004622          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA  570 (741)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A  570 (741)
                      ..|++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|...                 .+..+...|++++|
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A  444 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA  444 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence            9999999999999999999999999999999999999999987766543                 45667778999999


Q ss_pred             HHHHHHHHhhC
Q 004622          571 LECLQQVLYID  581 (741)
Q Consensus       571 ~~~~~~al~~~  581 (741)
                      +..+..+.+..
T Consensus       445 ~~~l~~A~~~~  455 (484)
T COG4783         445 IIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHhc
Confidence            99999888765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.17  E-value=1.3e-10  Score=88.54  Aligned_cols=67  Identities=30%  Similarity=0.335  Sum_probs=64.7

Q ss_pred             ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 004622           68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL  134 (741)
Q Consensus        68 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p  134 (741)
                      ++..|.++|.+++..|+|++|+..|+++++++|+++.+++.+|.++..+| ++++|+..|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            56789999999999999999999999999999999999999999999999 79999999999999998

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.16  E-value=1.1e-08  Score=98.90  Aligned_cols=182  Identities=16%  Similarity=0.129  Sum_probs=132.7

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHH
Q 004622          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW  452 (741)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~  452 (741)
                      ..+..++..|...+..|+|++|+..|++++..+|..+.+   .+.+|.++++.+++++|+..+++.++.+|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            467778899999999999999999999999999988644   48999999999999999999999999988764   568


Q ss_pred             HHHHHHHHHcC---------------C---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004622          453 KRRGQARAALG---------------E---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (741)
Q Consensus       453 ~~la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  514 (741)
                      +.+|.++...+               +   ..+|+..++..++..|++.-+              .+|...+..+-.   
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence            88888764443               1   346788899999999977432              111111111100   


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622          515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQV  577 (741)
Q Consensus       515 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (741)
                      .-..--+.+|..|.+.|.|..|+.-++.+++..|+.   .+++..++.+|...|..++|.......
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            011122356777777788888888888888777664   457777778888888877777665443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.15  E-value=7.3e-09  Score=97.77  Aligned_cols=175  Identities=21%  Similarity=0.221  Sum_probs=115.0

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHH
Q 004622          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW  452 (741)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~  452 (741)
                      .....++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|+++.|+..+++.++..|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            346778899999999999999999999999998876   58899999999999999999999999999988764   578


Q ss_pred             HHHHHHHHHcC-----------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622          453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (741)
Q Consensus       453 ~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  521 (741)
                      +.+|.++....           ...+|+..|+..+...|++..+-              +|...+..+-.   .-..--+
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~  145 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHEL  145 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHH
Confidence            88888765542           24477788888888888763221              11111111000   0011123


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCChHHH
Q 004622          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKA  570 (741)
Q Consensus       522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A  570 (741)
                      .+|..|.+.|.+..|+..++.+++..|+.+   .++..++.+|..+|..+.|
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            456666677777777777777777666653   4566666677777766633

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.15  E-value=1e-09  Score=113.01  Aligned_cols=113  Identities=22%  Similarity=0.284  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      +...|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (741)
                      ++++|+..|++++.++|++..+...++.+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888888888887777775544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.11  E-value=1.9e-10  Score=91.52  Aligned_cols=81  Identities=30%  Similarity=0.349  Sum_probs=73.0

Q ss_pred             hcCCHHHHHHHHHHHHhccC---ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 004622           48 SLRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALS  124 (741)
Q Consensus        48 ~~g~~~~Ai~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  124 (741)
                      .+|+|+.|+..|+++++..+   +...++.+|.||+++|+|++|+..+++ +..+|.++..++.+|.++..+|++++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            37999999999999999885   456688899999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHH
Q 004622          125 VWEKG  129 (741)
Q Consensus       125 ~~~~a  129 (741)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.11  E-value=2.6e-08  Score=96.19  Aligned_cols=183  Identities=11%  Similarity=0.022  Sum_probs=115.4

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 004622          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT  521 (741)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  521 (741)
                      .+..++..|......|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++.+|+++   .+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45566677777777777777777777777777766443   36777777777777777777777777766653   5566


Q ss_pred             HHHHHHHHcCC------------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622          522 YLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       522 ~la~~~~~~~~------------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  583 (741)
                      .+|.++...+.                  ..+|+..|++.++..|++..+              .+|...+..+-   ..
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~~  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---DR  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---HH
Confidence            67766544431                  235566666666666665321              11111111110   00


Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH-LIWNLTRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                      -..--+..|..|.+.|.|..|+.-++.+++..|+. .....+..++..|..+|..++|....+.+
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            11223356777888888888888888888877765 22333778888888888888887655544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.10  E-value=3.4e-08  Score=94.56  Aligned_cols=308  Identities=13%  Similarity=0.047  Sum_probs=211.5

Q ss_pred             hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCc---hhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH
Q 004622          305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSS---DSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV  381 (741)
Q Consensus       305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~  381 (741)
                      +......|..+|...++++|+..+.+.+....+..   ..+-.+..+..++|.|+++....-.....  ..-.++.....
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~--a~~~~ds~~~~   83 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT--ARELEDSDFLL   83 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            44556678999999999999999999997653322   24445667778889888887753222221  11122333345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------H
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------E  450 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------~  450 (741)
                      .++.++++.+...-++.+++.+....+..-...     ..+...+|..+..++.++++++.|+++++...++.      .
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            677788888888888888888887777643222     25666788888888889999999998887644332      3


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 004622          451 AWKRRGQARAALGESVEAIQDLSKALEFEPN----S------ADILHERGIVNFKFKDFNAAVEDLSACVKLD------K  514 (741)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p  514 (741)
                      ++..+|..+....++++|+-+..++.++...    +      .-+++.++..+...|...+|.++.+++.++.      +
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra  243 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA  243 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence            6778888888888999988888888776422    1      2356778888888888888888888887652      2


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChH-----HHHHHHHHHHhhCcc
Q 004622          515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSE-----KALECLQQVLYIDKR  583 (741)
Q Consensus       515 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~p~  583 (741)
                      -.......+|.+|...|+.+.|..-|+++......      ...++...+.++....-..     .|++.-++++++...
T Consensus       244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~  323 (518)
T KOG1941|consen  244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS  323 (518)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence            22355667888888888888888888888765322      2345555555554433323     377777777765432


Q ss_pred             c------HHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          584 F------SKAYHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       584 ~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      -      ...+..++.+|..+|.-++-...+.++-+.
T Consensus       324 IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  324 IGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            1      345677888888888777776666665444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.4e-10  Score=102.89  Aligned_cols=100  Identities=26%  Similarity=0.321  Sum_probs=91.5

Q ss_pred             HHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004622           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (741)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~  112 (741)
                      +++..-+..++++|..+.|..||.+|++||.++|. +..|.|||.||+++++|+.+..+|+++++++|+..++++.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            34445557799999999999999999999999955 57789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhc
Q 004622          113 FSALGRKEEALSVWEKGYEHA  133 (741)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~l~  133 (741)
                      ++....+++|+..+++++.+.
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHH
Confidence            999999999999999997654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.09  E-value=1.4e-08  Score=95.87  Aligned_cols=52  Identities=8%  Similarity=-0.112  Sum_probs=27.8

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHhhhhcCCc-hHHHHHHHHHHHHHhCCCHHHH
Q 004622          589 HLRGLLLHGLGQHKKAIKDLSSGSRTMMPH-LIWNLTRWRNLCFNAWPFIRRR  640 (741)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A  640 (741)
                      +..|..|.+.|.+..|+..++.+++..|+. .....+..++.+|..+|..+.|
T Consensus       145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            345566666666666666666666665554 1122355666666666666533

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.08  E-value=2e-10  Score=114.79  Aligned_cols=119  Identities=23%  Similarity=0.248  Sum_probs=111.2

Q ss_pred             HhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (741)
Q Consensus        35 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  113 (741)
                      ++..-+.+++++|+.++|+.|+..|++||+++ +++..+.+||.++++.++|..|+.++.++++++|.+.++|+++|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            34555688999999999999999999999999 67888999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 004622          114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK  154 (741)
Q Consensus       114 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  154 (741)
                      +.++++.+|+..|++...+.|+.+. ++..+..+.......
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~-~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPD-ATRKIDECNKIVSEE  122 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 999998888887653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.06  E-value=7e-10  Score=83.32  Aligned_cols=65  Identities=26%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q 004622           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (741)
Q Consensus        73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  137 (741)
                      +.+|..+++.|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999985

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=7.2e-10  Score=104.79  Aligned_cols=103  Identities=24%  Similarity=0.245  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CC----hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004622           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YE----IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG  110 (741)
Q Consensus        36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g  110 (741)
                      +..-|-+++++|+.++|+.|+..|+++|... ++    ..+|.|||.|.+.+|||..|+.+|.+++.++|.+.+|+++=+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            3455789999999999999999999999966 33    445899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622          111 CAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      .|++.+.++++|....+..+.++-+...
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            9999999999999999988877765544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.1e-08  Score=97.18  Aligned_cols=120  Identities=17%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG---ESVEAIQDLS  473 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~  473 (741)
                      .+.-+.-++.-+..+|++++.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+.   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            4444555555566666666666666666666666666666666666666666666666665554433   2445556666


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004622          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (741)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  516 (741)
                      +++..+|.+..+...+|..++..|+|.+|+..++..++..|.+
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            6666666666666666666666666666666666666655444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.01  E-value=1.1e-08  Score=94.06  Aligned_cols=117  Identities=17%  Similarity=0.183  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 004622          482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (741)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  558 (741)
                      ....++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+.++++++...|.+...+..+|
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            34456666666666666666666666666654442   346666667777777777777777777776666666666667


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       559 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      .++...|+...+...+..++.                    .+++|++.+++++..+|++
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            766666666555544444432                    2566677777777777766

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.01  E-value=3.2e-08  Score=87.99  Aligned_cols=198  Identities=18%  Similarity=0.145  Sum_probs=133.8

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (741)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  458 (741)
                      ..+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|...-++.+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            34567788888888888889999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  538 (741)
                      ++.-|++.-|.+.+.+-.+.+|++|---..+-..- ..-++.+|..-+.+-.+...+....|+..+..   +|+..+ ..
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e~  217 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-ET  217 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-HH
Confidence            88889999999998888888888875333222221 22356666655544333333333333322222   222211 12


Q ss_pred             HHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622          539 AHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (741)
Q Consensus       539 ~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (741)
                      .++++.....++       .+.++.+|..+...|+.++|...|+-++..+
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            233333222222       3456667777777777777777777666543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.01  E-value=1e-08  Score=88.18  Aligned_cols=104  Identities=24%  Similarity=0.331  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR  455 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l  455 (741)
                      +.++..|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+..|++++...|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            445666666666666666766666666666654   3566666666666666666666666666665553   4556666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 004622          456 GQARAALGESVEAIQDLSKALEFEPNSADI  485 (741)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  485 (741)
                      |.++...|++++|+..+++++...|++..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            666666666666666666666666665443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.8e-08  Score=95.77  Aligned_cols=123  Identities=19%  Similarity=0.119  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 004622          499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---NSEKALECLQ  575 (741)
Q Consensus       499 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~  575 (741)
                      .+.-+.-++..+..+|++..-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++....   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            4455566666777788888888888888888888888888888888888888888888887766553   3567778888


Q ss_pred             HHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622          576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW  621 (741)
Q Consensus       576 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  621 (741)
                      +++..+|.+..+.+.+|..++..|+|.+|...++..+...|.+.++
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            8888888888888888888888888888888888888877776443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.00  E-value=9.1e-09  Score=94.37  Aligned_cols=98  Identities=16%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 004622          465 SVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEA  539 (741)
Q Consensus       465 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~  539 (741)
                      +..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344444444433333333  3344555555555555555555555555544332   23455555555555555555555


Q ss_pred             HHHHHHhCcccHHHHHHHHHHHH
Q 004622          540 HLKAIQLDRNFLEAWGHLTQFYQ  562 (741)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~  562 (741)
                      +++++.+.|.....+..+|.++.
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHH
Confidence            55555555555555555555554

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=7.9e-09  Score=93.47  Aligned_cols=117  Identities=21%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc------c---CC----------hhhHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 004622           38 TARIELAKLCSLRNWSKAIRILDSLLAQ------S---YE----------IQDICNRAFCYSQLELHKHVIRDCDKALQL   98 (741)
Q Consensus        38 ~~~~~~~~~~~~g~~~~Ai~~~~~al~~------~---~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   98 (741)
                      .-+-+++++|+.|+|++|+..|..||..      .   .+          ...+.|.+.|++..|+|-+++..|..+|..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            3478999999999999999999999641      1   12          223689999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 004622           99 DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK  154 (741)
Q Consensus        99 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  154 (741)
                      +|.|.+|+|++|.++...=+.++|...|.++|+++|.-......-+..+......+
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek  315 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK  315 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987765555565555555444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.99  E-value=1.1e-08  Score=87.96  Aligned_cols=99  Identities=25%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHH
Q 004622          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQ  559 (741)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~  559 (741)
                      ++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++...|++   +.++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            3444444444444444444444444444333   2334444444444444444444444444443332   233444444


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCccc
Q 004622          560 FYQDLANSEKALECLQQVLYIDKRF  584 (741)
Q Consensus       560 ~~~~~~~~~~A~~~~~~al~~~p~~  584 (741)
                      ++...|++++|+..+++++...|++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCC
Confidence            4444444444444444444444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=4.5e-08  Score=87.06  Aligned_cols=201  Identities=18%  Similarity=0.189  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004622          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (741)
Q Consensus       415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (741)
                      +..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH
Q 004622          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH-LKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~  573 (741)
                      --|++.-|...+.+..+.+|+++.--..+=.. ...-+..+|..-+ +++...+.+ ...|+..+..   .|+..+ ...
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---LgkiS~-e~l  218 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LGKISE-ETL  218 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---HhhccH-HHH
Confidence            99999999999999999999998433222222 2234566666544 444443322 3333332222   222211 122


Q ss_pred             HHHHHhhCccc-------HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622          574 LQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW  621 (741)
Q Consensus       574 ~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  621 (741)
                      ++++.....++       .++++.+|..+...|+.++|...|+-++..+.-++++
T Consensus       219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE  273 (297)
T COG4785         219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVE  273 (297)
T ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHH
Confidence            33333332222       5679999999999999999999999998876555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.97  E-value=1.5e-06  Score=85.27  Aligned_cols=224  Identities=27%  Similarity=0.310  Sum_probs=187.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCChHHHH
Q 004622          394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI  469 (741)
Q Consensus       394 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~  469 (741)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            56778888888888887776  367888888999999999999999998887  67788888889999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622          470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (741)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  545 (741)
                      ..+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999999888777555666666 88899999999999999988766   3456666667777888899999999999999


Q ss_pred             hCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622          546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP  617 (741)
Q Consensus       546 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  617 (741)
                      ..+. ....+..++..+...+++..|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            8888 68888899999999999999999999999888886777777777777777789999999998888875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.96  E-value=2.9e-08  Score=91.28  Aligned_cols=121  Identities=22%  Similarity=0.271  Sum_probs=80.8

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 004622          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (741)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~  452 (741)
                      ..+.....++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            344555667777777777888888888888877765543   35677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004622          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (741)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  516 (741)
                      ..+|.++...|+...+...+..++.                    .+++|++++++++..+|++
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            7777777777666555544444332                    2455666666666666554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.96  E-value=3.4e-06  Score=82.71  Aligned_cols=204  Identities=27%  Similarity=0.341  Sum_probs=179.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004622          380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (741)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~  457 (741)
                      ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL  137 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence            356777888899999999999999999987  678888999999999999999999999999999988877665666666


Q ss_pred             -HHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Q 004622          458 -ARAALGESVEAIQDLSKALEFEP---NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLALSSIGE  532 (741)
Q Consensus       458 -~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  532 (741)
                       ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++...+. ....+..++..+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             89999999999999999988776   35566777777788899999999999999999999 68999999999999999


Q ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  583 (741)
                      ++.|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999987778888888888778899999999999999887

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.95  E-value=5.2e-08  Score=86.69  Aligned_cols=124  Identities=19%  Similarity=0.172  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHH
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQAR  459 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~  459 (741)
                      ..+......++...+...++..+..+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+...+|.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~   95 (145)
T PF09976_consen   16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL   95 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            34444456788888888888888888877   4566778888888888888888888888776554   34667778888


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (741)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (741)
                      ...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus        96 ~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   96 LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            888888888888755 33334456677778888888888888888887763

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.95  E-value=2e-07  Score=89.38  Aligned_cols=295  Identities=15%  Similarity=0.155  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC----C--cHHHHH
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNP----S--AGEAWK  453 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~--~~~~~~  453 (741)
                      -....|.-++...++++|+....+.+..-.+.   ...+-.+..+...+|.+++++...-..+....    .  ..+++.
T Consensus         8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l   87 (518)
T KOG1941|consen    8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL   87 (518)
T ss_pred             HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888889999999999999888764443   24455567788888888887766544443221    1  235788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 004622          454 RRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTY  522 (741)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~  522 (741)
                      +++..+....++.+++.+-.-.+.+....     ..+...+|..+..++.++++++.|+.+++...++.      .++..
T Consensus        88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~  167 (518)
T KOG1941|consen   88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS  167 (518)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence            88999988889999999888887765433     35677789999999999999999999998743332      56788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------cccHH
Q 004622          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRFSK  586 (741)
Q Consensus       523 la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~  586 (741)
                      +|..+....++++|.-+..++.++....          .-+++.++..+..+|..-.|.++.+++.++.      +-...
T Consensus       168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar  247 (518)
T KOG1941|consen  168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR  247 (518)
T ss_pred             HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence            9999999999999999999988764321          3467788999999999999999999988763      22355


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHhhhhcCC--c---hHHHHHHHHHHHHHhCCCHHH-----HHHHHHhhcc-------
Q 004622          587 AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP--H---LIWNLTRWRNLCFNAWPFIRR-----RLLCTRLLKS-------  649 (741)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~---~~~~~~~~la~~~~~~g~~~~-----A~~~~~~~~~-------  649 (741)
                      ....+|.+|...|+.+.|..-|+++......  +   ...+ +...+.+.....-...     |++..+.+.+       
T Consensus       248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~a-l~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~  326 (518)
T KOG1941|consen  248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEA-LDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA  326 (518)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence            6778999999999999999999999765321  1   1222 4445555544333322     4433322211       


Q ss_pred             CCc--ccchhhHHHHhcCCCchhHhhhHHHH
Q 004622          650 TVS--FAGLTLMEILIPSSRNIGAKDCIPRM  678 (741)
Q Consensus       650 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~  678 (741)
                      ...  .....++.+|...|..++-...+..+
T Consensus       327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra  357 (518)
T KOG1941|consen  327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRA  357 (518)
T ss_pred             hHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            111  35667788888888877776666553

>PRK11906 transcriptional regulator; Provisional

Probab=98.94  E-value=6.7e-08  Score=97.78  Aligned_cols=160  Identities=13%  Similarity=0.096  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCCc
Q 004622          384 RLSRGIAQVNEG---KYASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSA  448 (741)
Q Consensus       384 ~~~~a~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~  448 (741)
                      ++..|...+..+   ....|..+|.+++   ..+|....++..++.|++..         ....+|.+..+++++++|.+
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            366777776554   4567888999999   88899899999999888765         23556777888888888888


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H
Q 004622          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-L  527 (741)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~  527 (741)
                      +.++..+|.+....++++.|...|++++.++|+.+.+++..|.+..-.|+.++|+..++++++++|....+-...-.+ .
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~  417 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM  417 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888765444333333 3


Q ss_pred             HHcCCHHHHHHHHHHH
Q 004622          528 SSIGEYKKAEEAHLKA  543 (741)
Q Consensus       528 ~~~~~~~~A~~~~~~a  543 (741)
                      +-..-.++|+..|-+-
T Consensus       418 ~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        418 YVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HcCCchhhhHHHHhhc
Confidence            3445566777666553

>PRK15331 chaperone protein SicA; Provisional

Probab=98.93  E-value=2.6e-08  Score=86.31  Aligned_cols=97  Identities=10%  Similarity=0.011  Sum_probs=90.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      .-+-.+|.+|+|++|...|+-....+ .|+..+..+|.|+..+|+|++|+..|-.+..++++++...+..|.|++.+|+.
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            44667899999999999999998888 88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChH
Q 004622          120 EEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       120 ~~A~~~~~~al~l~p~~~~  138 (741)
                      +.|+..|+.++. .|.+..
T Consensus       122 ~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        122 AKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHHHHHHh-CcchHH
Confidence            999999999998 576666

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.93  E-value=4.9e-09  Score=79.85  Aligned_cols=66  Identities=29%  Similarity=0.423  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC-ChHHHHHHHHHhhhhcC
Q 004622          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  616 (741)
                      +..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 45555555555555554

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.92  E-value=9.8e-10  Score=104.00  Aligned_cols=225  Identities=17%  Similarity=0.096  Sum_probs=176.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  464 (741)
                      -..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.+..|++...+..|...+..++.++.....+|...+.+....|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------HHHHHHHHHHcCCHHH
Q 004622          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---------YTYLGLALSSIGEYKK  535 (741)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~~~~~~  535 (741)
                      ..+|.+.++.++++.|++.+..-.++.+-.    ..++    +-+.+..|....+         ...-|..+...|.++.
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~  252 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV  252 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence            999999999999999998766555444322    1111    1111222222111         1223666777888888


Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      ++.++.+-+.....+...-.+ +..+.+..+++.++....+++..+|.........+.+-.-.|...++...++.++.+.
T Consensus       253 ~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~  331 (536)
T KOG4648|consen  253 PVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA  331 (536)
T ss_pred             ceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence            888887766655544433333 6677788899999999999888888766666666666666778888889999999888


Q ss_pred             CCc
Q 004622          616 MPH  618 (741)
Q Consensus       616 ~~~  618 (741)
                      |.+
T Consensus       332 P~~  334 (536)
T KOG4648|consen  332 PAV  334 (536)
T ss_pred             ccc
Confidence            876

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.5e-06  Score=80.40  Aligned_cols=253  Identities=15%  Similarity=0.072  Sum_probs=178.5

Q ss_pred             HHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004622          347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA  426 (741)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  426 (741)
                      +-++-.|+|..++++        ....... +......+.+.+.|+..|.+..-+......-   .....+...++....
T Consensus        16 Rn~fY~Gnyq~~ine--------~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~   83 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINE--------AEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLE   83 (299)
T ss_pred             HHHHHhhHHHHHHHH--------HHhhccc-cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhh
Confidence            346678888888884        2222222 2556666777888888888876655443322   122355556666665


Q ss_pred             HcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622          427 FQRELEAAISDFTEAIQSN--PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (741)
Q Consensus       427 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (741)
                      .-++.++-+.-....+...  ..+......-|.++...|++++|+......     .+.++...-..++.++.+.+-|.+
T Consensus        84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~  158 (299)
T KOG3081|consen   84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEK  158 (299)
T ss_pred             CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666555555544332  223345556677888999999999888762     356666666778888899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622          505 DLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (741)
Q Consensus       505 ~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (741)
                      .++++.+.+.+.  .+..+|..+..    .+++.+|.-+|+..-+..|..+.....++.++..+|+|++|...++.++..
T Consensus       159 ~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  159 ELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             HHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999988876543  33344444433    456888999999988878888889999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHCCChHHHHH-HHHHhhhhcCCc
Q 004622          581 DKRFSKAYHLRGLLLHGLGQHKKAIK-DLSSGSRTMMPH  618 (741)
Q Consensus       581 ~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~  618 (741)
                      ++++++++.++..+-...|...++.+ .+.+.....|++
T Consensus       237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            99999999999998888888876654 445555566766

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.92  E-value=8.5e-08  Score=85.32  Aligned_cols=117  Identities=21%  Similarity=0.076  Sum_probs=69.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChH
Q 004622          495 KFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSE  568 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~  568 (741)
                      ..++...+...++..+..+|+.   ..+.+.+|.+++..|++++|+..|+.++...|+.   +.+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3555666666666666666665   3445556666666666666666666666655433   235556666666666666


Q ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS  612 (741)
Q Consensus       569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (741)
                      +|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            666666442 2223334556666666666666666666666553

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.91  E-value=1.8e-07  Score=93.48  Aligned_cols=98  Identities=21%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc-------c
Q 004622          519 AYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------F  584 (741)
Q Consensus       519 ~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~  584 (741)
                      .+..+|.+|... |++++|+.+|+++++.....      ...+..+|.++...|+|++|+..|+++....-+       -
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            444555555555 66666666666665543211      234455666666666666666666666543211       1


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  616 (741)
                      ...++..+.++...|++..|...+++....+|
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            12344555566666666666666666665554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.91  E-value=6.9e-08  Score=103.47  Aligned_cols=134  Identities=19%  Similarity=0.172  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHh--CCCcH
Q 004622          383 FRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQR--------ELEAAISDFTEAIQS--NPSAG  449 (741)
Q Consensus       383 ~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~l~~--~~~~~  449 (741)
                      -++..|..++..++   +..|+.+|+++++.+|+++.++..++.++....        +...+.....+++..  +|.++
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~  420 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP  420 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence            34667777766554   778888888888888888888888777765432        123333344443332  44445


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (741)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  517 (741)
                      .++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            5555555555555555555555555555555 345555555555555555555555555555555554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.90  E-value=4.5e-08  Score=89.75  Aligned_cols=101  Identities=19%  Similarity=0.155  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (741)
Q Consensus       518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  594 (741)
                      ..++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..+++++.+.|.....+..+|.+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            444555555555566666666666655554432   23555556666666666666666666665555555555555555


Q ss_pred             HH-------HCCChH-------HHHHHHHHhhhhcCCc
Q 004622          595 LH-------GLGQHK-------KAIKDLSSGSRTMMPH  618 (741)
Q Consensus       595 ~~-------~~g~~~-------~A~~~~~~al~~~~~~  618 (741)
                      +.       ..|+++       +|+..|++++..+|++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            55       444433       5556666666666655

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.90  E-value=2.1e-08  Score=82.20  Aligned_cols=89  Identities=31%  Similarity=0.465  Sum_probs=33.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Q 004622          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (741)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~  568 (741)
                      +|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+...+..+|.++...|+++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHH
Q 004622          569 KALECLQQV  577 (741)
Q Consensus       569 ~A~~~~~~a  577 (741)
                      +|...+.++
T Consensus        86 ~a~~~~~~~   94 (100)
T cd00189          86 EALEAYEKA   94 (100)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.2e-08  Score=97.44  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=115.8

Q ss_pred             CCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622          301 TNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS  380 (741)
Q Consensus       301 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  380 (741)
                      .-..+...+.-|+.+|+.|+|..|...|++++..-+..-..-            .++...        .       ....
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~------------~ee~~~--------~-------~~~k  256 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFD------------EEEQKK--------A-------EALK  256 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCC------------HHHHHH--------H-------HHHH
Confidence            446677888899999999999999999999987543211100            011000        0       0011


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  460 (741)
                      .-++++++.++...++|..|+..+.++|..+|+|..+++..|.++...|+++.|+..|++++++.|.|..+...+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999888888888776


Q ss_pred             HcCChHHH-HHHHHHHHhhCC
Q 004622          461 ALGESVEA-IQDLSKALEFEP  480 (741)
Q Consensus       461 ~~~~~~~A-~~~~~~al~~~p  480 (741)
                      ....+.+. .+.|.+++..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            66555443 667777766543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.89  E-value=2.5e-08  Score=81.73  Aligned_cols=97  Identities=28%  Similarity=0.414  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      ++.+|..+...|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44556666666666666666666666666655666666666666666666666666666666665556666666666666


Q ss_pred             ChHHHHHHHHHHHhhCC
Q 004622          464 ESVEAIQDLSKALEFEP  480 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p  480 (741)
                      +++.|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            66666666666555544

>PRK11906 transcriptional regulator; Provisional

Probab=98.89  E-value=1.6e-07  Score=95.07  Aligned_cols=146  Identities=13%  Similarity=0.077  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622          465 SVEAIQDLSKAL---EFEPNSADILHERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (741)
Q Consensus       465 ~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  532 (741)
                      .+.|+..|.+++   .++|..+.++..++.+++..         ....+|....+++++++|.++.++..+|.+....++
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence            344555566666   55565566655555555432         123445555556666666666666666666655566


Q ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH-HHHCCChHHHHHHHHH
Q 004622          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQHKKAIKDLSS  610 (741)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~  610 (741)
                      ++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|....+-...-++ .+.....++|+..|-+
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            66666666666666666666666666666666666666666666666666543333222222 3333444555555444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.89  E-value=3.3e-07  Score=102.23  Aligned_cols=218  Identities=13%  Similarity=0.036  Sum_probs=191.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCChHHHHHH
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQD  471 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~----~~~~~~la~~~~~~~~~~~A~~~  471 (741)
                      -.+..+.|++.+..+|+....|...-..+.+.++.++|.+.+++++.. ++..    ...|..+-++...-|.-+.-.+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            345567788999999999999999999999999999999999999864 3332    23455555555566777778888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Q 004622          472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--  549 (741)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--  549 (741)
                      |++|.+... ...++..|..+|...+.+++|.++++..++...+....|..+|..++.+.+-+.|...+.+|++.-|.  
T Consensus      1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            999888753 46788999999999999999999999999998888999999999999999999999999999999988  


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      +.......|++-++.|+.+.+...|+..+..+|.-.+.|..+...-.+.|+.+.+...|++++.+.
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            788888999999999999999999999999999999999999999999999999999999998765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.88  E-value=8.9e-08  Score=102.60  Aligned_cols=141  Identities=16%  Similarity=0.106  Sum_probs=76.2

Q ss_pred             hCCCCHHHH--HHHHHHHHHccc---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------hHHHHHHHHHHH
Q 004622          410 EDPMYPEAL--IGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--------SVEAIQDLSKAL  476 (741)
Q Consensus       410 ~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al  476 (741)
                      .-|.++.+|  +..|..+...+.   ...|+.+|+++++++|++..++..++.++.....        ...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            345555444  455555555433   6678888888888888887777777766644321        223333333333


Q ss_pred             hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622          477 EF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (741)
Q Consensus       477 ~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  551 (741)
                      .+  +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            32  344444555555555555555555555555555555 244555555555555555555555555555555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.8e-06  Score=79.98  Aligned_cols=262  Identities=13%  Similarity=0.024  Sum_probs=194.9

Q ss_pred             HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622          306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL  385 (741)
Q Consensus       306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (741)
                      +.+..+-+. |-.|+|..++..-.+.-... .+......+...|...|.+...+.+           +.........+..
T Consensus        10 d~LF~iRn~-fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~e-----------I~~~~~~~lqAvr   76 (299)
T KOG3081|consen   10 DELFNIRNY-FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISE-----------IKEGKATPLQAVR   76 (299)
T ss_pred             hhHHHHHHH-HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccc-----------cccccCChHHHHH
Confidence            344444444 44789999988887776654 6777777888888888887766553           2222233344555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      ..+...-.-++.++-+....+.+..  +..+......-|.++...|++++|+....+.     .+.++...-..++.+..
T Consensus        77 ~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~  151 (299)
T KOG3081|consen   77 LLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMH  151 (299)
T ss_pred             HHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHH
Confidence            5666666666666666665555443  2333455666778999999999999888773     34556666677888999


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  539 (741)
                      +++-|.+.++++.+++.  ...+..||..+..    .+++.+|.-+|++.-+..|..+......+.++..+|+|++|...
T Consensus       152 r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l  229 (299)
T KOG3081|consen  152 RFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL  229 (299)
T ss_pred             HHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence            99999999999998874  3445555555543    34789999999999998888999999999999999999999999


Q ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCcccHHH
Q 004622          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL-ECLQQVLYIDKRFSKA  587 (741)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~  587 (741)
                      ++.++..++++++++.++..+-...|...++. +.+.+....+|.++.+
T Consensus       230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            99999999999999999999999999887765 4556666677876543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.87  E-value=1e-08  Score=81.39  Aligned_cols=79  Identities=30%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622          531 GEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       531 ~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  608 (741)
                      |+++.|+.+++++++..|.  +...++.+|.+++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|++.|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4445555555555544442  233444445555555555555555544 4444444444444455555555555555544


Q ss_pred             HH
Q 004622          609 SS  610 (741)
Q Consensus       609 ~~  610 (741)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.87  E-value=3.3e-05  Score=83.38  Aligned_cols=124  Identities=10%  Similarity=-0.019  Sum_probs=105.9

Q ss_pred             HHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHc
Q 004622          315 SASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNE  394 (741)
Q Consensus       315 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  394 (741)
                      ....++|.+|+....+.++.+|+..-+....|-.++++|+.++|..        +++......+.+...+-.+-.+|...
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~--------~Le~~~~~~~~D~~tLq~l~~~y~d~   90 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALK--------LLEALYGLKGTDDLTLQFLQNVYRDL   90 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHH--------HHhhhccCCCCchHHHHHHHHHHHHH
Confidence            4557899999999999999999999999999999999999999997        88888888888888888889999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 004622          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (741)
Q Consensus       395 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~  447 (741)
                      |++++|..+|++++..+|+ .+.+..+-.+|.+.+.|.+=.+.--+..+..|.
T Consensus        91 ~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk  142 (932)
T KOG2053|consen   91 GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK  142 (932)
T ss_pred             hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999 888888888888888776644443333334443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.84  E-value=7.5e-08  Score=83.50  Aligned_cols=109  Identities=14%  Similarity=0.101  Sum_probs=97.8

Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (741)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  453 (741)
                      ....+...+..+..|..++..|++++|..+|+-+...+|.+++.+..||.|+..+++|++|+..|..+..++++++...+
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            34455556778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 004622          454 RRGQARAALGESVEAIQDLSKALEFEPNSA  483 (741)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~  483 (741)
                      ..|.|+...|+.+.|...|..++. .|.+.
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            999999999999999999999988 45443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.82  E-value=1.9e-07  Score=93.41  Aligned_cols=193  Identities=17%  Similarity=0.121  Sum_probs=117.3

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHH
Q 004622          422 GTARAFQRELEAAISDFTEAIQSNP--S----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHER  489 (741)
Q Consensus       422 a~~~~~~~~~~~A~~~~~~~l~~~~--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l  489 (741)
                      |.+|...+++++|.+.|.++....-  +    ....+...+.++... ++++|+.++++++.+.-.  +    ...+..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3444444555555555554433211  0    112344445554443 677777777777665311  1    4467778


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------cHHHHH
Q 004622          490 GIVNFKF-KDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-------FLEAWG  555 (741)
Q Consensus       490 a~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~  555 (741)
                      |.+|... |++++|+++|++++.....  .    ...+..+|.++...|+|++|+..|+++....-+       -...+.
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            8888888 8899999999988876322  1    245677888899999999999999988765321       123556


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHH--CCChHHHHHHHHHhhhhc
Q 004622          556 HLTQFYQDLANSEKALECLQQVLYIDKRF-----SKAYHLRGLLLHG--LGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~  615 (741)
                      ..+.++...|++..|...+++....+|..     ......+-.++..  ...++.|+..|.+...++
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence            77788888999999999999988888743     2333444444433  346777777777776665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.81  E-value=1.6e-08  Score=75.83  Aligned_cols=63  Identities=30%  Similarity=0.433  Sum_probs=37.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~  448 (741)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345566666666666666666666666666666666666666666666666666666666654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.79  E-value=2.3e-06  Score=79.89  Aligned_cols=190  Identities=15%  Similarity=0.153  Sum_probs=126.2

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---H
Q 004622          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---A  451 (741)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~  451 (741)
                      ...+..++..|...+..|++++|+..|+.+...+|..   ..+...++.++++.+++++|+..+++-+.+.|+++.   +
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            4457889999999999999999999999999988876   478899999999999999999999999999988754   5


Q ss_pred             HHHHHHHHHHcC--------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004622          452 WKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (741)
Q Consensus       452 ~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  523 (741)
                      ++..|.++...=        -...|+..++..+...|++.-+-.....+           ..+...+      ..--..+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~I  173 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAI  173 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHH
Confidence            677777765432        24567788888888888763221110000           0000000      1111335


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622          524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (741)
Q Consensus       524 a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  584 (741)
                      |..|.+.|.+..|+..++.+++..|+.   .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            566666666666666666666655443   3455566666666666666655443333333443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.78  E-value=2.8e-07  Score=89.59  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHH
Q 004622          381 VDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGEAWK  453 (741)
Q Consensus       381 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~  453 (741)
                      ....+..|..+ +..|+|++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|++++...|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34555666655 55789999999999999999887   578899999999999999999999999888776   467788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 004622          454 RRGQARAALGESVEAIQDLSKALEFEPNSADI  485 (741)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  485 (741)
                      .+|.++...|++++|...|+++++.+|++..+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            88888888888888988888888888877644

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.78  E-value=1.8e-07  Score=76.09  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=102.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHH
Q 004622           14 NKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDC   92 (741)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~   92 (741)
                      +....++..-||.+-...+-.|-..++ ++--+-+.|+.+.|++.|+++|.+- .++.+|.|||.++--.|+.++|+.++
T Consensus        22 ~~~~aE~~lede~~~~~~~e~S~~LEl-~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDL  100 (175)
T KOG4555|consen   22 NLIPAESDLKDEEPDTQAIKASRELEL-KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDL  100 (175)
T ss_pred             cccchhhhhcccCCchHHHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHH
Confidence            444556666777777776655555444 3334678999999999999999988 88999999999999999999999999


Q ss_pred             HHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622           93 DKALQLDPTLLQ----AYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus        93 ~~al~~~p~~~~----a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      ++++++.-+-..    ++..+|.+|..+|+.+.|...|+.+-++......
T Consensus       101 n~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen  101 NKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR  150 (175)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence            999999754433    8999999999999999999999999988765433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.77  E-value=5e-06  Score=93.22  Aligned_cols=209  Identities=12%  Similarity=0.000  Sum_probs=113.5

Q ss_pred             HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 004622          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSN  445 (741)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~  445 (741)
                      .+....+|++.-.|+..-..++..++.+.|.+.+++++.. ++...    ..|..+-.....-|.-+...+.|+++.+..
T Consensus      1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence            3344445555555555555555555566666666665542 22221    222222222222344444455555555432


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 004622          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYL  523 (741)
Q Consensus       446 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l  523 (741)
                       +...++..|..+|...+++++|.++++.+++...+...+|..+|..+++.++-+.|...+.+|++.-|.  +.......
T Consensus      1528 -d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1528 -DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred             -chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence             223455555556666666666666666666655555556666666666666666666666666665555  44555555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622          524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (741)
Q Consensus       524 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (741)
                      |.+-++.|+.+.+...|+..+..+|.-.+.|.-+...-.+.|+.+.+...|++++.+
T Consensus      1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            555666666666666666666666666666666666666666666666666666543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.76  E-value=3.3e-07  Score=89.08  Aligned_cols=102  Identities=17%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Q 004622          484 DILHERGIVN-FKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGH  556 (741)
Q Consensus       484 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~  556 (741)
                      ...+..+..+ ...|+|++|+..|+..++..|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3444444433 34455666666666666655555   3455556666666666666666666665555443   445555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622          557 LTQFYQDLANSEKALECLQQVLYIDKRFS  585 (741)
Q Consensus       557 la~~~~~~~~~~~A~~~~~~al~~~p~~~  585 (741)
                      +|.++...|++++|...|+++++..|+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            56666556666666666666665555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=6.7e-08  Score=74.51  Aligned_cols=63  Identities=27%  Similarity=0.332  Sum_probs=58.8

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622           76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus        76 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      ..+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++.+|+..|+++++.+|+++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            568899999999999999999999999999999999999999999999999999999998887

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.69  E-value=6.7e-08  Score=73.27  Aligned_cols=64  Identities=22%  Similarity=0.216  Sum_probs=53.0

Q ss_pred             HhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 004622           80 SQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFL  144 (741)
Q Consensus        80 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  144 (741)
                      ++.|+|++|+..+++++..+|++.++++.+|.+|...|++++|...+++++..+|+++. +...+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE-YQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH-HHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH-HHHHH
Confidence            56788888998898888888988888888899999999999999999888888888766 44444

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.69  E-value=5.8e-07  Score=91.93  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (741)
Q Consensus       422 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  501 (741)
                      -.++...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.+++...|.+...+...+..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34444556677777777776666653   444566666666777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (741)
Q Consensus       502 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  543 (741)
                      |+.+.++++...|.+...|+.|+.+|...|+++.|+..++.+
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            777777777777777777777777777777777777666543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=2.5e-05  Score=78.37  Aligned_cols=322  Identities=15%  Similarity=0.058  Sum_probs=194.2

Q ss_pred             HhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc--------cHHHHHHH
Q 004622          316 ASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI--------SVDFRLSR  387 (741)
Q Consensus       316 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  387 (741)
                      ....+...+....+.+.....+.+.++...+..++-.|++..|.+.       ....-....+.        ..-+|.++
T Consensus       217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~Kl-------L~~sni~~~~g~~~T~q~~~cif~NNl  289 (696)
T KOG2471|consen  217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKL-------LLVSNIHKEAGGTITPQLSSCIFNNNL  289 (696)
T ss_pred             HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHH-------HHhcccccccCccccchhhhheeecCc
Confidence            3445556666666777777777888888999999999999999884       22222222222        22345789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 004622          388 GIAQVNEGKYASAISIFDQILK-E--------DP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (741)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  449 (741)
                      |.+++..|.|.-+..+|.++++ .        .|         ...+.+++.|..|...|++-.|.++|.+++.....+|
T Consensus       290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP  369 (696)
T KOG2471|consen  290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP  369 (696)
T ss_pred             ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999996 1        11         2357899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC---hHHHHHHHHH--------------HHhh----CCCC------HHHHHHHHHHHHHcC-----
Q 004622          450 EAWKRRGQARAALGE---SVEAIQDLSK--------------ALEF----EPNS------ADILHERGIVNFKFK-----  497 (741)
Q Consensus       450 ~~~~~la~~~~~~~~---~~~A~~~~~~--------------al~~----~p~~------~~~~~~la~~~~~~~-----  497 (741)
                      ..|..+|.|.+...+   .++......+              .+-+    .+..      +..-..++.++.+.+     
T Consensus       370 rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~  449 (696)
T KOG2471|consen  370 RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLN  449 (696)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCc
Confidence            999999999865321   1111000000              0000    0000      111111222211111     


Q ss_pred             CHHHHHHHHHHHHHh----------------------------CC-CCH-----------HHHHHHHHHHHHcCCHHHHH
Q 004622          498 DFNAAVEDLSACVKL----------------------------DK-ENK-----------SAYTYLGLALSSIGEYKKAE  537 (741)
Q Consensus       498 ~~~~A~~~~~~al~~----------------------------~p-~~~-----------~~~~~la~~~~~~~~~~~A~  537 (741)
                      .-..--..+.-+...                            .| ..+           ..+-+.+.+-..+|+.-.|+
T Consensus       450 e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL  529 (696)
T KOG2471|consen  450 EKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKAL  529 (696)
T ss_pred             hhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence            000000000000000                            01 110           23445666677778888888


Q ss_pred             HHHHHHHHhCcccHHHHHHHHHHH-----HHcCChHHHHHHHHHH---------------------------------Hh
Q 004622          538 EAHLKAIQLDRNFLEAWGHLTQFY-----QDLANSEKALECLQQV---------------------------------LY  579 (741)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~-----~~~~~~~~A~~~~~~a---------------------------------l~  579 (741)
                      ..-++.++. |+-..++..+|.+|     .-+.+..+|...+.--                                 -+
T Consensus       530 ~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q  608 (696)
T KOG2471|consen  530 SAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQ  608 (696)
T ss_pred             HHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcc
Confidence            777777654 33344555554443     4456666666554331                                 11


Q ss_pred             hCccc-----HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch-HHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622          580 IDKRF-----SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL-IWNLTRWRNLCFNAWPFIRRRLLCTRL  646 (741)
Q Consensus       580 ~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  646 (741)
                      ..|..     ...++++|.++.-+|++++|...+..+..+-+... +.+ ....-.+-..+|+...|+...+.
T Consensus       609 ~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A-~~lavyidL~~G~~q~al~~lk~  680 (696)
T KOG2471|consen  609 SVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQA-TVLAVYIDLMLGRSQDALARLKQ  680 (696)
T ss_pred             cccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHH-HHHHHHHHHhcCCCcchHHHHHh
Confidence            11222     34578899999999999999999988887766321 233 44444555788888888855544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.69  E-value=6.6e-06  Score=76.83  Aligned_cols=189  Identities=14%  Similarity=0.039  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 004622          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTY  522 (741)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~  522 (741)
                      +..++.-|....+.|++++|+..|+.+....|..   ..+...++..+++.+++++|+...++.+.+.|+++   .+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            4556667777777777777777777777666654   34666677777777777777777777777766654   34555


Q ss_pred             HHHHHHHcC--------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622          523 LGLALSSIG--------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (741)
Q Consensus       523 la~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  594 (741)
                      .|.+++..=        -..+|+..|+..+...|++..+-.....+           ..+...+      ..--...|..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iary  176 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIARY  176 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHHH
Confidence            555544321        12345555555566555543211100000           0000000      1112346777


Q ss_pred             HHHCCChHHHHHHHHHhhhhcCCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCccc
Q 004622          595 LHGLGQHKKAIKDLSSGSRTMMPH-LIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFA  654 (741)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  654 (741)
                      |.+.|.+-.|+..++.+++..|+. .....+..+..+|..+|-.++|-..-+.+....|..
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            888888888888888887765544 122237777788888888888887777776666644

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.68  E-value=3.8e-05  Score=82.94  Aligned_cols=227  Identities=14%  Similarity=0.027  Sum_probs=172.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 004622          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (741)
Q Consensus       391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~  470 (741)
                      ....+++..|.....+.++..|+.+.+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+++.++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678999999999999999999999999999999999999999988888877888888889999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHH---------HHHHHH
Q 004622          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIGEYK---------KAEEAH  540 (741)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~---------~A~~~~  540 (741)
                      .|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+++.. |..+..+.......+         -|...+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999999998 8888888899999999988887777777788888744 333444433333332         344455


Q ss_pred             HHHHHhC-ccc-HHHHHHHHHHHHHcCChHHHHHHHHHHH-h-hCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622          541 LKAIQLD-RNF-LEAWGHLTQFYQDLANSEKALECLQQVL-Y-IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       541 ~~al~~~-~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al-~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  616 (741)
                      ++.++.. +-. ..-....-.++..+|++++|...+..-+ + ..+.+...-......+...+++.+-.+...+.+..++
T Consensus       178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            5555554 211 1112223345677889999999884333 3 3344444445667778888999999888889988888


Q ss_pred             Cc
Q 004622          617 PH  618 (741)
Q Consensus       617 ~~  618 (741)
                      ++
T Consensus       258 Dd  259 (932)
T KOG2053|consen  258 DD  259 (932)
T ss_pred             cc
Confidence            86

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.67  E-value=6.3e-07  Score=91.63  Aligned_cols=114  Identities=18%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 004622          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  574 (741)
                      ..++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+...
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA  257 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA  257 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            344555555555555444433   23334555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHh
Q 004622          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (741)
Q Consensus       575 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (741)
                      ++++...|++...|+.|+.+|...|+++.|+..+..+
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            5555555555555555555555555555555554433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=5.1e-05  Score=80.77  Aligned_cols=338  Identities=13%  Similarity=0.037  Sum_probs=206.9

Q ss_pred             hcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHH---HhHHH-HHHHhhccCCccHHHHHHHHHHHH
Q 004622          317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK---RNKKF-CVTRISKSKSISVDFRLSRGIAQV  392 (741)
Q Consensus       317 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~  392 (741)
                      ..|+.+.|.+..+-.     ++...|.+++....+..+++-|.--.-   .+... .+.+..+ ++.  +.-...|....
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi  811 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI  811 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence            357777776654432     355678888888887777776644211   11100 2222222 222  22234566777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 004622          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (741)
Q Consensus       393 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  472 (741)
                      ..|-.++|..+|++.-.        +-.+-..|...|.+++|.+..+.--.+  .....|++.|..+...++.+.|+++|
T Consensus       812 eLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Aleyy  881 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYY  881 (1416)
T ss_pred             HHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHH
Confidence            88999999999988654        334556777788888887766542221  12346777888888888888888888


Q ss_pred             HHH----------HhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Q 004622          473 SKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKL--------------------  512 (741)
Q Consensus       473 ~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------  512 (741)
                      +++          +.-+|          .++..|.+-|..+...|+.+.|+.+|..+-..                    
T Consensus       882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA  961 (1416)
T KOG3617|consen  882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA  961 (1416)
T ss_pred             HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence            865          22233          24556777888888888888888888876432                    


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Cccc--HH------------HHHHHHHHHHHcC-ChHHH
Q 004622          513 -DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNF--LE------------AWGHLTQFYQDLA-NSEKA  570 (741)
Q Consensus       513 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~--~~------------~~~~la~~~~~~~-~~~~A  570 (741)
                       ...+..+.+.+|+.|...|++.+|+..|.++-..      ..++  .+            -....+..|...| +...|
T Consensus       962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~A 1041 (1416)
T KOG3617|consen  962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKA 1041 (1416)
T ss_pred             HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHH
Confidence             2345567888999999999999999888776432      2221  11            1112233344444 45555


Q ss_pred             HHHHHHH------Hh-----------------hCc-ccHHHHHHHHHHHHHCCChHHHHHHHHH------hhhhc-----
Q 004622          571 LECLQQV------LY-----------------IDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSS------GSRTM-----  615 (741)
Q Consensus       571 ~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~-----  615 (741)
                      +..|.++      ++                 ++| .++..+...+..+....+|++|...+-.      ++.+-     
T Consensus      1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred             HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5554432      11                 233 3577788888888888888888765433      33321     


Q ss_pred             -----------CCc-------hHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcccchhhHHHHhcCCCchhHhhhHHH
Q 004622          616 -----------MPH-------LIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPR  677 (741)
Q Consensus       616 -----------~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  677 (741)
                                 |..       ....++..+|.+..++|.|..|.+-|....     ....-.+.++..|+.++- .+|..
T Consensus      1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG-----dKl~AMraLLKSGdt~KI-~FFAn 1195 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG-----DKLSAMRALLKSGDTQKI-RFFAN 1195 (1416)
T ss_pred             chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh-----hHHHHHHHHHhcCCcceE-EEEee
Confidence                       110       122347788888899999988885444322     123445777888887653 34433


Q ss_pred             H
Q 004622          678 M  678 (741)
Q Consensus       678 ~  678 (741)
                      +
T Consensus      1196 ~ 1196 (1416)
T KOG3617|consen 1196 T 1196 (1416)
T ss_pred             c
Confidence            3

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.67  E-value=7.4e-07  Score=74.70  Aligned_cols=94  Identities=24%  Similarity=0.223  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 004622          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLG  524 (741)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la  524 (741)
                      +++.+|.++-..|+.++|+..|++++......   ..+++.+|..+...|++++|+..+++.+...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            34445555555555555555555555443222   234445555555555555555555555554444   334444445


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 004622          525 LALSSIGEYKKAEEAHLKAI  544 (741)
Q Consensus       525 ~~~~~~~~~~~A~~~~~~al  544 (741)
                      .++...|++++|+..+-.++
T Consensus        83 l~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555544443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.65  E-value=0.00012  Score=71.71  Aligned_cols=257  Identities=18%  Similarity=0.075  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  459 (741)
                      +-+++.-+....-.|+++.|.+-|+.++. +|.. .-.+..|-.-....|..+.|..+.+++....|.-+.++...-...
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            34455566667778888888888877664 3331 112222222334668888888888888888888888777777777


Q ss_pred             HHcCChHHHHHHHHHHHhh---CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004622          460 AALGESVEAIQDLSKALEF---EPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (741)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  531 (741)
                      +..|+++.|++..+.....   .++-.     -.+...+.... .-+...|...-.+++++.|+...+-..-+..++..|
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~  277 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDG  277 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence            7888888888887766543   22211     11222222222 235777888888888888888888788888888888


Q ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH---HHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ---VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  608 (741)
                      +..++-.+++.+.+..|. +.++    .+|....--+.++.-+++   ...+.|++.+..+..+..-..-|++..|..--
T Consensus       278 ~~rKg~~ilE~aWK~ePH-P~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A  352 (531)
T COG3898         278 NLRKGSKILETAWKAEPH-PDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA  352 (531)
T ss_pred             chhhhhhHHHHHHhcCCC-hHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence            888888888888887765 3332    233333333334443433   34567888888888888888888888888888


Q ss_pred             HHhhhhcCCchHHHHHHHHHHHHHhC-CCHHHHH-HHHHhh
Q 004622          609 SSGSRTMMPHLIWNLTRWRNLCFNAW-PFIRRRL-LCTRLL  647 (741)
Q Consensus       609 ~~al~~~~~~~~~~~~~~la~~~~~~-g~~~~A~-~~~~~~  647 (741)
                      +.+....|..   .++..++.+-... |+-.+.. +.-+.+
T Consensus       353 eaa~r~~pre---s~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         353 EAAAREAPRE---SAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHhhhCchh---hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            8888887763   3377778877554 8887777 444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.63  E-value=5.7e-06  Score=72.15  Aligned_cols=149  Identities=9%  Similarity=0.059  Sum_probs=99.8

Q ss_pred             cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004622          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (741)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~  540 (741)
                      .=+++.......+.+...|. ..-.+.+|..+...|++.+|...|++++. ....++..+..++...+..+++..|...+
T Consensus        69 ~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          69 KLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             hcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            33455555555555555553 34456677777777777777777777765 35566677777777777777777777777


Q ss_pred             HHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622          541 LKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS  612 (741)
Q Consensus       541 ~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (741)
                      ++..+.+|.  .++....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|...+....
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            777776654  3556666777777777777777777777777776 5666667777777777666665554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.62  E-value=1e-06  Score=73.80  Aligned_cols=94  Identities=23%  Similarity=0.158  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 004622          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERG  490 (741)
Q Consensus       417 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la  490 (741)
                      +++.+|.++-..|+.++|+..|++++......   ..++..+|..+...|++++|+..+++++...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            34444444444444444444444444432221   234444455555555555555555555444444   334444444


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 004622          491 IVNFKFKDFNAAVEDLSACV  510 (741)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al  510 (741)
                      .++...|++++|+..+-.++
T Consensus        83 l~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            44455555555554444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.62  E-value=0.00018  Score=70.50  Aligned_cols=286  Identities=14%  Similarity=0.036  Sum_probs=203.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHc
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAAL  462 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~  462 (741)
                      ..|.+....||-..|.+.-.+.-+.-..+  +-++..-++.-.-.|+++.|.+-|+..+. +|..- -.+..|-.--...
T Consensus        89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~  167 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL  167 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence            45777778899999998888876543333  45556667777888999999999988764 33321 1222222333567


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---H--HHHHHHHHHHHcCCHH
Q 004622          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---DKENK---S--AYTYLGLALSSIGEYK  534 (741)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~---~--~~~~la~~~~~~~~~~  534 (741)
                      |..+.|..+-+.+-...|.-+.++...-...+..|+|+.|+++.+.....   .++..   .  .+...+.... .-+..
T Consensus       168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~  246 (531)
T COG3898         168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPA  246 (531)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChH
Confidence            99999999999999999998888888888888999999999998876543   22221   1  2222222222 34578


Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHh---
Q 004622          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG---  611 (741)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---  611 (741)
                      .|...-.++.++.|+...+-..-+..++..|+..++-.+++.+.+..|. +.+    +.+|....--+.++.-++++   
T Consensus       247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L  321 (531)
T COG3898         247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKL  321 (531)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHH
Confidence            8899999999999999998888999999999999999999999998886 443    33344433334455555555   


Q ss_pred             hhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhHHHHhcC-CCchhHhhhHHHHHh
Q 004622          612 SRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLMEILIPS-SRNIGAKDCIPRMYV  680 (741)
Q Consensus       612 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  680 (741)
                      ..+.|++ .+. ...++..-..-|++..|..--+......|  ..+.-|+.+-... |+..++...+.+..+
T Consensus       322 ~slk~nn-aes-~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         322 ESLKPNN-AES-SLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HhcCccc-hHH-HHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            3456777 666 88888999999999988855555555555  3556666666655 888888777766654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.61  E-value=6e-07  Score=76.23  Aligned_cols=98  Identities=19%  Similarity=0.241  Sum_probs=87.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccC----ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChh---HHHHHHHHH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQSY----EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ---AYILKGCAF  113 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~  113 (741)
                      .++-+.+++|+|++|++.|+.....-|    ...+...++-+|++.|+|++|+..+++-++++|+++.   +++.+|.++
T Consensus        15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            345568999999999999999887542    3445789999999999999999999999999999987   899999999


Q ss_pred             HHcCC---------------HHHHHHHHHHHHHhcCCChH
Q 004622          114 SALGR---------------KEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       114 ~~~g~---------------~~~A~~~~~~al~l~p~~~~  138 (741)
                      +.+..               ...|...|++.+..-|+++-
T Consensus        95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            99987               88999999999999999876

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.60  E-value=0.00024  Score=74.79  Aligned_cols=287  Identities=15%  Similarity=0.100  Sum_probs=155.9

Q ss_pred             hHHHHhhhhHHHhcCChhhHHHHHHHh------hcc----CCCCc-hhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHh
Q 004622          305 HDVHDKLSSDSASLNDSNTNSESYSKS------SIS----DNKSS-DSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRI  373 (741)
Q Consensus       305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a------~~~----~p~~~-~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~  373 (741)
                      .+.+...|..+-+..+|++|+++|++.      +++    .|..+ ..-...+.-+...|+++.|++.+-.         
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie---------  731 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE---------  731 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH---------
Confidence            345566788888889999999988763      222    12211 1223344445556666666663211         


Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (741)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  453 (741)
                             +...............+.+|+.+++.+-..... ...|-..+.-|...|+++.|.+.|.++-.        ..
T Consensus       732 -------a~~~~kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~  795 (1636)
T KOG3616|consen  732 -------ANCLIKAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADL--------FK  795 (1636)
T ss_pred             -------hhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcch--------hH
Confidence                   122233334445566777777776655433222 33455567777788888888877766421        12


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------------CHHHHHHHHHHH------HH--
Q 004622          454 RRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------------DFNAAVEDLSAC------VK--  511 (741)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------------~~~~A~~~~~~a------l~--  511 (741)
                      .-...|.+.|+|+.|.+.-.+...  |.. ...|...+.-+-..|             .++.|+..|.+.      ++  
T Consensus       796 dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv  873 (1636)
T KOG3616|consen  796 DAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV  873 (1636)
T ss_pred             HHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH
Confidence            223456667777777766655432  322 223333343333333             444455555442      11  


Q ss_pred             --hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Ccc-----------------cHH--HHHHH------
Q 004622          512 --LDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRN-----------------FLE--AWGHL------  557 (741)
Q Consensus       512 --~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~-----------------~~~--~~~~l------  557 (741)
                        .+|+. ...+..+|.-+...|+...|...|-++-..      ...                 +..  +.+..      
T Consensus       874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksigg  953 (1636)
T KOG3616|consen  874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGG  953 (1636)
T ss_pred             HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCc
Confidence              12332 245666777777778777777766554221      110                 000  00100      


Q ss_pred             ---HHHHHHcCChHHHHHH------HHHHHh-----hCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          558 ---TQFYQDLANSEKALEC------LQQVLY-----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       558 ---a~~~~~~~~~~~A~~~------~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                         ..++.+.|-.+.|+..      |+-++.     .....+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus       954 daavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen  954 DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred             HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence               1122333444444332      111111     122346778889999999999999999999999987655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.59  E-value=2.1e-07  Score=70.56  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=48.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004622          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~  457 (741)
                      +..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777777666665554

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=1.4e-06  Score=82.10  Aligned_cols=105  Identities=22%  Similarity=0.286  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ  457 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~  457 (741)
                      .+..|.-++..|+|..|...|..-++..|++   +.++++||.+++.+|+++.|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6788888999999999999999999999886   6889999999999999999999999999887654   678999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 004622          458 ARAALGESVEAIQDLSKALEFEPNSADILHE  488 (741)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  488 (741)
                      +....|+.++|..+|+++++.+|....+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999987765443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.55  E-value=5e-08  Score=93.28  Aligned_cols=102  Identities=21%  Similarity=0.287  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004622           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (741)
Q Consensus        37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  115 (741)
                      ...|+...+++..|+++.||+.|+.+|+++ +....+..|+.++++++.+..|+.+|..+++++|+..+.|-.+|.+...
T Consensus       115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl  194 (377)
T KOG1308|consen  115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL  194 (377)
T ss_pred             HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence            456788999999999999999999999999 8888899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCChH
Q 004622          116 LGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       116 ~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      +|++++|...+..+.+++-+-..
T Consensus       195 lg~~e~aa~dl~~a~kld~dE~~  217 (377)
T KOG1308|consen  195 LGNWEEAAHDLALACKLDYDEAN  217 (377)
T ss_pred             hhchHHHHHHHHHHHhccccHHH
Confidence            99999999999999999865433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=0.00059  Score=73.04  Aligned_cols=83  Identities=11%  Similarity=0.020  Sum_probs=61.9

Q ss_pred             HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622          306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL  385 (741)
Q Consensus       306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (741)
                      ..++.-|..+-..|+.+.|+..|..+-.        +..+..+..-+|+.++|...             .....+..+.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~i-------------A~esgd~AAcY  971 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARI-------------AEESGDKAACY  971 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHH-------------HHhcccHHHHH
Confidence            4677788888889999999999988765        33445556677887777662             12334456777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 004622          386 SRGIAQVNEGKYASAISIFDQILK  409 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~  409 (741)
                      .+|+.|.+.|++.+|+.+|.++-.
T Consensus       972 hlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  972 HLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHH
Confidence            899999999999999999887643

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.52  E-value=3.1e-06  Score=72.00  Aligned_cols=86  Identities=21%  Similarity=0.223  Sum_probs=73.1

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHH
Q 004622          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW  452 (741)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~  452 (741)
                      .....++..|...+..|+|.+|++.|+.+....|..   ..+...++.+|+..+++++|+..+++.++++|+++   .++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            446678889999999999999999999999988865   57888999999999999999999999999998875   467


Q ss_pred             HHHHHHHHHcCC
Q 004622          453 KRRGQARAALGE  464 (741)
Q Consensus       453 ~~la~~~~~~~~  464 (741)
                      +..|.+++.+..
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            888888777654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.52  E-value=2.5e-06  Score=80.44  Aligned_cols=102  Identities=20%  Similarity=0.126  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 004622          452 WKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGL  525 (741)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~  525 (741)
                      .+..|.-++..|+|..|...|...++.+|++   ++++++||.+++.+|+|++|...|..+++..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4555555666666666666666666666654   4556666666666666666666666666554443   355666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 004622          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEA  553 (741)
Q Consensus       526 ~~~~~~~~~~A~~~~~~al~~~~~~~~~  553 (741)
                      +...+|+.++|...|+++++..|+...+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            6666666666666666666666655443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=3.1e-06  Score=74.60  Aligned_cols=111  Identities=27%  Similarity=0.333  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la  456 (741)
                      +-+-.-|.-++..|+|.+|..-|..++...|..+     ..|.+.|.++++++.++.|+..+.++++++|.+..++...|
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            3344668889999999999999999999998753     56778899999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (741)
                      .+|..+..+++|+..|.+.++.+|....+.-....+
T Consensus       176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999999999999876655544443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=0.00022  Score=66.08  Aligned_cols=225  Identities=15%  Similarity=0.112  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------H-HHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------------------P-EALIGRGTARAFQRELEAAISDFTEA  441 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~~~~~~A~~~~~~~  441 (741)
                      ...|...-.++.+...+++|...+...-+.|..+                  | ......|.+....|+..+.+.-+...
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L  148 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL  148 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3455555566667777777776665554433211                  1 12233455556667666666555444


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Q 004622          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAY  520 (741)
Q Consensus       442 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  520 (741)
                      ...-       ..+-.........+..++.+++=+      ..+.+.+..++...|.|.-.+..+.+.++.+ |.++...
T Consensus       149 ~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~  215 (366)
T KOG2796|consen  149 KTVV-------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL  215 (366)
T ss_pred             HHHH-------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence            3211       111222222333355555555533      4567788889999999999999999999987 6677888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622          521 TYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (741)
Q Consensus       521 ~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  594 (741)
                      ..+|.+..+.|+.+.|..+|+++-+..      .....+..+.+.++.-.+++..|...+.+++..+|.++.+-.+.|.|
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            889999999999999999998655432      22345667788888999999999999999999999999999999999


Q ss_pred             HHHCCChHHHHHHHHHhhhhcCCc
Q 004622          595 LHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ....|+..+|++.++.++...|..
T Consensus       296 llYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcc
Confidence            999999999999999999999876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.45  E-value=1.1e-06  Score=67.67  Aligned_cols=59  Identities=22%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 004622          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (741)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  550 (741)
                      +|...+++++|++++++++..+|+++..+..+|.++..+|++.+|+..++++++..|++
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            33344444444444444444444444444444444444444444444444444444433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.42  E-value=5.2e-05  Score=66.34  Aligned_cols=150  Identities=21%  Similarity=0.229  Sum_probs=105.7

Q ss_pred             HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVED  505 (741)
Q Consensus       427 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~  505 (741)
                      +.=+++....-..+.+...|.. .-.+.+|......|++.+|...|++++. +.-.++..+..+++..+..+++..|...
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t  146 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT  146 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence            3334555555555555555543 3355677777788888888888877775 4556777777888888888888888888


Q ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004622          506 LSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL  578 (741)
Q Consensus       506 ~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  578 (741)
                      +++..+.+|.  .+.....+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+..+|..-+....
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            8887777664  3566677788888888888888888888887776 6666677777778887777665555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.36  E-value=1.5e-06  Score=88.08  Aligned_cols=67  Identities=18%  Similarity=0.221  Sum_probs=62.8

Q ss_pred             CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622           67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEHA  133 (741)
Q Consensus        67 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~al~l~  133 (741)
                      +.+..++|+|.+|.++|+|++|+..|+++|+++|++..+   |+.+|.+|..+|++++|+.+|++|+++.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            456679999999999999999999999999999999865   9999999999999999999999999983

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.34  E-value=5.7e-06  Score=72.58  Aligned_cols=97  Identities=18%  Similarity=0.286  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhcc-CChhhHHHHHHHHHhh----------hcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--
Q 004622           52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQL----------ELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR--  118 (741)
Q Consensus        52 ~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--  118 (741)
                      |+.|.+.++.....+ .++..+++-|.+++.+          ..+++|+.-++.||.++|+..+|++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            678999999998888 7788888888888776          446789999999999999999999999999988765  


Q ss_pred             ---------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004622          119 ---------KEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (741)
Q Consensus       119 ---------~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  149 (741)
                               ++.|...|++|...+|+|.. .+..|.....
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~~k  125 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRKSLEMAAK  125 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHh
Confidence                     77889999999999999999 7777765543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=4.7e-05  Score=76.46  Aligned_cols=288  Identities=10%  Similarity=0.037  Sum_probs=193.9

Q ss_pred             HhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHH-HHchhcHHHHHHHHHHhHHH--HHHHhh-----ccCCcc
Q 004622          309 DKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKL-SFKWDMLKETSNEAKRNKKF--CVTRIS-----KSKSIS  380 (741)
Q Consensus       309 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~a~~~~~~~~~~--~~~~~~-----~~~~~~  380 (741)
                      .-.+...+..+.|+..++.+...-.++..+..++.+.+.+ |++.|..+...- .+....+  +.....     -+....
T Consensus        21 ~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~l-l~el~aL~~~~~~~~~~~~gld~~~~   99 (696)
T KOG2471|consen   21 LCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVL-LKELEALTADADAPGDVSSGLSLKQG   99 (696)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHH-HHHHHHHHHhhccccchhcchhhhcc
Confidence            3346667788999999999998888776666655555544 444444332211 1111100  111110     011222


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CC--C
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQS------NP--S  447 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~--~  447 (741)
                      .-..+..|.+++....+.+|++.....+..-...     ...-+..-..+....+-++|+.++.-.-++      .+  +
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn  179 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN  179 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence            3467788888888899999998877766532211     122233444555566667776654432211      11  0


Q ss_pred             c-------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622          448 A-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (741)
Q Consensus       448 ~-------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  502 (741)
                      +                         ..+.......+.+..+...+....+.++.+..+.+......+..++..|++.+|
T Consensus       180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA  259 (696)
T KOG2471|consen  180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA  259 (696)
T ss_pred             ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence            0                         012333344556677777888888888888888899999999999999999999


Q ss_pred             HHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--------c---------ccHHHHH
Q 004622          503 VEDLSAC-VKLDKE--------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-D--------R---------NFLEAWG  555 (741)
Q Consensus       503 ~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--------~---------~~~~~~~  555 (741)
                      .+.+... +...|.        ....|.++|.++++.|.|.-+..+|.++++. +        |         ....+++
T Consensus       260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY  339 (696)
T KOG2471|consen  260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY  339 (696)
T ss_pred             HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence            9988664 222332        2245789999999999999999999999961 1        1         1356889


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 004622          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (741)
Q Consensus       556 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  597 (741)
                      +.|..|...|+.-.|.++|.++......+|..|..+|.+...
T Consensus       340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.26  E-value=0.0083  Score=61.80  Aligned_cols=116  Identities=11%  Similarity=-0.101  Sum_probs=81.5

Q ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH-HHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       530 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  608 (741)
                      ..-...|...|.++-+.......++..-|.+ |...++.+-|...|+-.+...++.+..-......+...|+-..|...|
T Consensus       379 ~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LF  458 (656)
T KOG1914|consen  379 AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALF  458 (656)
T ss_pred             hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHH
Confidence            3334555556666554332222333322222 456788999999999999999999888888888889999999999999


Q ss_pred             HHhhhh--cCCchHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622          609 SSGSRT--MMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRL  646 (741)
Q Consensus       609 ~~al~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  646 (741)
                      ++++..  .|+. ...+|...-..-...|+....+...+.
T Consensus       459 Er~l~s~l~~~k-s~~Iw~r~l~yES~vGdL~si~~lekR  497 (656)
T KOG1914|consen  459 ERVLTSVLSADK-SKEIWDRMLEYESNVGDLNSILKLEKR  497 (656)
T ss_pred             HHHHhccCChhh-hHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            999876  4444 334477777778888998888755444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.00048  Score=63.90  Aligned_cols=186  Identities=11%  Similarity=0.104  Sum_probs=134.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  465 (741)
                      .-|.+....|+..+.+.-+......       ..............+..++.+++-+      ..+.+.+..++...|.|
T Consensus       127 lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy  193 (366)
T KOG2796|consen  127 LHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEY  193 (366)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhh
Confidence            4455556667777666655544321       1111222222233355566665543      24566777888888888


Q ss_pred             HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622          466 VEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       466 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~  538 (741)
                      .-.+..+.+.++.+ |.++.....+|.+.++.|+.+.|..+++..-+..      .....+..+.+.++...+++..|..
T Consensus       194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r  273 (366)
T KOG2796|consen  194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHR  273 (366)
T ss_pred             hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHH
Confidence            88889999988887 5667788888999999999988888888654432      2334566777888888889999999


Q ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (741)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  584 (741)
                      .+.+++..+|.++.+.++.|.|+.-.|+..+|++.++.++...|..
T Consensus       274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999999999999999888863

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00074  Score=62.08  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----CCcH
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG  449 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~~~~  449 (741)
                      ...+..-+..+...++|++|..++.++.+...++      ..++-..+........+.++..+++++..+.     |+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            4456666777778888999988888888655543      2344445555556666777777777765542     2222


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004622          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSA  508 (741)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~  508 (741)
                      ..-...+--.....++++|++.|++++.+...+      .+.+...++++.+...|.+|-..+.+
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            222222222334445555555555555443221      12333444455555555554444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.21  E-value=3.7e-05  Score=62.91  Aligned_cols=97  Identities=24%  Similarity=0.268  Sum_probs=74.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc----HHHHHHHHHHHH
Q 004622          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLH  596 (741)
Q Consensus       521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~  596 (741)
                      -..|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+.    ..++...|.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3456677777888888888888888888888888888888888888888888888888775432    345777888888


Q ss_pred             HCCChHHHHHHHHHhhhhcCC
Q 004622          597 GLGQHKKAIKDLSSGSRTMMP  617 (741)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~~~  617 (741)
                      ..|+.+.|...|+.+-++...
T Consensus       127 l~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCCH
Confidence            888888888888888776543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.19  E-value=4.8e-06  Score=65.00  Aligned_cols=65  Identities=18%  Similarity=0.299  Sum_probs=35.2

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      ...++.++|.+|..+|++++|+.+|++++++.       |....++.++|.++...|++++|++++++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34455555555555566666665555555431       112344556666666666666666666666544

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.18  E-value=7.1e-06  Score=83.27  Aligned_cols=70  Identities=27%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622          512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA---WGHLTQFYQDLANSEKALECLQQVLYID  581 (741)
Q Consensus       512 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (741)
                      .+|+++.+++++|.+|+..|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.+++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            478889999999999999999999999999999999998854   9999999999999999999999999873

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0004  Score=63.30  Aligned_cols=96  Identities=15%  Similarity=0.054  Sum_probs=47.6

Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH-------HH
Q 004622          522 YLGLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KA  587 (741)
Q Consensus       522 ~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~  587 (741)
                      .+|.+|... .++++|+.+|+++-+.....      ...+...+..-...++|.+|+..|++.....-+++       ..
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy  197 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY  197 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence            344444432 55555555555554443221      12334444445555666666666666554333321       22


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622          588 YHLRGLLLHGLGQHKKAIKDLSSGSRTMMP  617 (741)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~  617 (741)
                      ++.-|.+++...+.-.+...+++..+++|.
T Consensus       198 flkAgLChl~~~D~v~a~~ALeky~~~dP~  227 (288)
T KOG1586|consen  198 FLKAGLCHLCKADEVNAQRALEKYQELDPA  227 (288)
T ss_pred             HHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence            344455555555555555556666566554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.14  E-value=5.3e-06  Score=64.75  Aligned_cols=64  Identities=28%  Similarity=0.417  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (741)
Q Consensus       517 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  580 (741)
                      ..++.++|.+|..+|++++|+.+|++++++.       |....++.++|.++...|++++|+.++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455566666666666666666666665441       112445666666666666666666666666654

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.14  E-value=0.013  Score=59.19  Aligned_cols=126  Identities=7%  Similarity=-0.091  Sum_probs=87.3

Q ss_pred             hhhhHHHhcCChhhHHHHHHHhhccCCCCchhHH------HHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622          310 KLSSDSASLNDSNTNSESYSKSSISDNKSSDSTE------SRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF  383 (741)
Q Consensus       310 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  383 (741)
                      -.|..+-+++++.+|.+.|.+......+.+..+.      .+..+| -..+.+....        .........+.....
T Consensus        11 ~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~--------~l~~l~~~~~~s~~l   81 (549)
T PF07079_consen   11 FQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEK--------QLMELRQQFGKSAYL   81 (549)
T ss_pred             HhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHH--------HHHHHHHhcCCchHH
Confidence            3588899999999999999999877655543222      222333 2333332222        455556667777888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---------------PEALIGRGTARAFQRELEAAISDFTEAIQS  444 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  444 (741)
                      .+..|...++.+.|.+|++.+......-...               ...-...+.++...|++.++...+++.+..
T Consensus        82 ~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   82 PLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            8899999999999999999887665541111               111235688999999999999999887753

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.08  E-value=5.5e-05  Score=66.53  Aligned_cols=87  Identities=26%  Similarity=0.332  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--  464 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--  464 (741)
                      |+.|.+.++.....+|.+++.++.-|.++..+.+          +++|+.-|+.++.++|+..+++..+|.++...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5677888888888888888888888877776643          3456666777777777777777777777765542  


Q ss_pred             ---------hHHHHHHHHHHHhhCCCCH
Q 004622          465 ---------SVEAIQDLSKALEFEPNSA  483 (741)
Q Consensus       465 ---------~~~A~~~~~~al~~~p~~~  483 (741)
                               |++|..+|+++...+|++.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence                     3444444444444555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.00061  Score=65.45  Aligned_cols=160  Identities=14%  Similarity=0.058  Sum_probs=120.9

Q ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHH
Q 004622          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNF  494 (741)
Q Consensus       419 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~  494 (741)
                      ..-+.+....|+..+|.....+.++..|.+.-++..--.+++..|+...-...+++.+-. +|+-   ..+.-.++..+.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            334555667788888888888888888888888777778888888888888888888776 5544   344455667778


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHHH
Q 004622          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA  570 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A  570 (741)
                      ..|-|++|.+..+++++++|.+..+....+.++...|++.++.+...+.-..-...    ..-|...+.++...+.|+.|
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a  266 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA  266 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence            88889999999999999999888888888888888899888888776643322211    12344567777778888888


Q ss_pred             HHHHHHHH
Q 004622          571 LECLQQVL  578 (741)
Q Consensus       571 ~~~~~~al  578 (741)
                      +..|.+-+
T Consensus       267 leIyD~ei  274 (491)
T KOG2610|consen  267 LEIYDREI  274 (491)
T ss_pred             HHHHHHHH
Confidence            88887655

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.00037  Score=66.89  Aligned_cols=158  Identities=14%  Similarity=0.050  Sum_probs=133.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHc
Q 004622          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-DKEN---KSAYTYLGLALSSI  530 (741)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~  530 (741)
                      -+.+....|++.+|....++.++..|.+.-++..--..++.+|+.......+++.+.. +|+-   ..+.-.++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3455667899999999999999999999988888888999999999999999999877 6665   34455567788889


Q ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHCCChHHHHH
Q 004622          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIK  606 (741)
Q Consensus       531 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~  606 (741)
                      |-|++|.+...++++++|.+..+...++.++...|++.++.++..+--......    ..-|..-|.++...+.|+.|++
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            999999999999999999999999999999999999999999988765433221    2236667888888999999999


Q ss_pred             HHHHhh
Q 004622          607 DLSSGS  612 (741)
Q Consensus       607 ~~~~al  612 (741)
                      .|.+-+
T Consensus       269 IyD~ei  274 (491)
T KOG2610|consen  269 IYDREI  274 (491)
T ss_pred             HHHHHH
Confidence            998764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.00  E-value=7.7e-06  Score=51.26  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 004622           92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (741)
Q Consensus        92 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~  123 (741)
                      |+++|+++|+++.+++.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            78999999999999999999999999999996

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.00  E-value=0.012  Score=63.15  Aligned_cols=115  Identities=19%  Similarity=0.070  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHHHHHH
Q 004622          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALEC  573 (741)
Q Consensus       498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~  573 (741)
                      ..+.|.+++....+..|+....++..|+++...|+.++|+..|++++.....-    .-.++.++.++..+.+|++|..+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            44555566666666666666556666666666666666666666555322221    12445556666666666666666


Q ss_pred             HHHHHhhCccc-HHHHHHHHHHHHHCCCh-------HHHHHHHHHhh
Q 004622          574 LQQVLYIDKRF-SKAYHLRGLLLHGLGQH-------KKAIKDLSSGS  612 (741)
Q Consensus       574 ~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al  612 (741)
                      +.+..+.+.-. .-..+..|.++...|+.       ++|.+.|.++-
T Consensus       328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            66655543322 22334455555555555       55555555543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.96  E-value=1.7e-05  Score=53.48  Aligned_cols=42  Identities=24%  Similarity=0.158  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004622           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (741)
Q Consensus        70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~  111 (741)
                      ..+..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345666777777777777777777777777777777766664

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.95  E-value=0.0067  Score=61.44  Aligned_cols=128  Identities=13%  Similarity=0.042  Sum_probs=79.0

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cccHHHHHHHHHH-
Q 004622          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTE-  440 (741)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-  440 (741)
                      ...++....-.+++....+-..|....+|+.-+.+.+.+-..    .++.+.+.+.+|.++.+   .|+.++|+..+.. 
T Consensus       129 i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~  208 (374)
T PF13281_consen  129 IRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV  208 (374)
T ss_pred             HHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence            333444444455566666666777778888777777766554    34456667777777777   7788888888777 


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622          441 AIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (741)
Q Consensus       441 ~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (741)
                      .....+.+++.+..+|.+|-..         ...++|+..|.++.+..|+ ...-.+++.++...|
T Consensus       209 l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  209 LESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAG  273 (374)
T ss_pred             HhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcC
Confidence            4445566777777777776432         1255666666666666642 233334444444444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0011  Score=60.58  Aligned_cols=134  Identities=14%  Similarity=0.102  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------H
Q 004622          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------K  517 (741)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~  517 (741)
                      .+...+.+|. .+++++|+.++++++++..+..      ..+..+|.+|..- .++++|+.+|+++-+.....      .
T Consensus        76 ~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN  154 (288)
T KOG1586|consen   76 TYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN  154 (288)
T ss_pred             HHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence            3444444443 3466777777777766654332      2344677777654 77778888887776653322      1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (741)
Q Consensus       518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  585 (741)
                      ..+...+..-...++|.+|+..|+++....-+++       ..++.-|.+++...+.-.+...+++..+++|...
T Consensus       155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            3445556666677888888888887766554442       2345567777777777777777777777888543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.93  E-value=0.0013  Score=67.25  Aligned_cols=188  Identities=13%  Similarity=0.033  Sum_probs=110.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 004622          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (741)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~  467 (741)
                      ........+.+.-++.-++|++++|+.+.+|..++.-  ......+|.++++++++......    .........|..-+
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~e  248 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFWE  248 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchhh
Confidence            3344667899999999999999999999999888753  23346788888888876432211    01111111111111


Q ss_pred             HHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          468 AIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (741)
Q Consensus       468 A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a  543 (741)
                             .....+.  ...+...+|.+..+.|+.++|++.++..++.+|.  +..++.++..++...+.|.++...+.+.
T Consensus       249 -------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  249 -------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             -------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                   1111111  1334556777777777777777777777766654  3356677777777777777777776665


Q ss_pred             HHh-CcccHHHHHHHHHHHHHc-CC---------------hHHHHHHHHHHHhhCcccHHHH
Q 004622          544 IQL-DRNFLEAWGHLTQFYQDL-AN---------------SEKALECLQQVLYIDKRFSKAY  588 (741)
Q Consensus       544 l~~-~~~~~~~~~~la~~~~~~-~~---------------~~~A~~~~~~al~~~p~~~~~~  588 (741)
                      -++ -|.++...+.-+.+..+. ++               -..|++.+.+|++.+|.-+..+
T Consensus       322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            433 244444444433332221 11               1245677777877777655443

The molecular function of this protein is uncertain.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.037  Score=56.40  Aligned_cols=206  Identities=14%  Similarity=0.071  Sum_probs=134.0

Q ss_pred             HcccHHHHHHHHHHHHHhCCC------cH--------HHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------C
Q 004622          427 FQRELEAAISDFTEAIQSNPS------AG--------EAWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S  482 (741)
Q Consensus       427 ~~~~~~~A~~~~~~~l~~~~~------~~--------~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~  482 (741)
                      ..|-+++|.++-++++.....      ..        ..+-.++.|-.-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            446677787777777654211      11        12345566667789999988888777654   343       2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------
Q 004622          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---------  550 (741)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------  550 (741)
                      +.+...+|......+.++.|...|..+.+.... +.  ....++|..|...|+-+.-.+.++.   +.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence            456777888888888899999998888876433 22  3455678888887775544444333   33332         


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc---CCchH
Q 004622          551 -LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM---MPHLI  620 (741)
Q Consensus       551 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~  620 (741)
                       ..+++..|...+.++++.+|...+.+.+++...      ..-.+..+|.+....|+..++.+...-++.+.   |+. +
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di-~  522 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI-P  522 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc-h
Confidence             346667777788888999999888888876521      12345667888888888888888777776543   332 2


Q ss_pred             HHH--HHHHHHHHHhCCC
Q 004622          621 WNL--TRWRNLCFNAWPF  636 (741)
Q Consensus       621 ~~~--~~~la~~~~~~g~  636 (741)
                      ..+  ...+-.++...|+
T Consensus       523 vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  523 VQLWSSSILTDLYQALGE  540 (629)
T ss_pred             HHHHHHHHHHHHHHHhCc
Confidence            221  2234456666666

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.91  E-value=0.014  Score=62.03  Aligned_cols=149  Identities=17%  Similarity=0.113  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 004622          485 ILHERGIVNFKFKDFNAAVEDLSAC------VKL----DKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQL-------  546 (741)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~-------  546 (741)
                      .|-.-|.++.+..++++|+++|++.      +++    .|... ..-...|.-+...|+++.|+..|-.+-..       
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa  742 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA  742 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence            3445567777777777777766552      222    23222 22233455555666666666555432110       


Q ss_pred             -----------------Ccc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622          547 -----------------DRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       547 -----------------~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  608 (741)
                                       +.. -...|-.++.-|...|+|+.|.+.|.++-.        ...-...|-+.|++.+|.+.-
T Consensus       743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHH
Confidence                             000 012334566677777888888777766421        222334566777777776665


Q ss_pred             HHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHH
Q 004622          609 SSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCT  644 (741)
Q Consensus       609 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  644 (741)
                      .++..  |+. ...+|...+.-+...|+|.+|...|
T Consensus       815 ~e~~~--~e~-t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  815 EECHG--PEA-TISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHhcC--chh-HHHHHHHhHHhHHhhcchhhhhhee
Confidence            55532  333 2233555566666666666665433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.88  E-value=0.00094  Score=68.23  Aligned_cols=184  Identities=16%  Similarity=0.098  Sum_probs=127.7

Q ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (741)
Q Consensus       422 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  501 (741)
                      ..-..+..+.+.-++..+++++++|+.++++..+|.-  ......+|..+++++++......    .........|..- 
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~-  247 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW-  247 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh-
Confidence            3334566778888999999999999999999888753  23447889999999887653221    1111111112111 


Q ss_pred             HHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622          502 AVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQV  577 (741)
Q Consensus       502 A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (741)
                            ......+.+  ..+...+|.|..++|+.++|++.++..++..|.  +..+..+|..++...+.|.++...+.+.
T Consensus       248 ------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  248 ------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             ------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                  111111122  355677999999999999999999999988775  4568999999999999999999999886


Q ss_pred             Hhh-CcccHHHHHHHHHHHHH-CCC---------------hHHHHHHHHHhhhhcCCc
Q 004622          578 LYI-DKRFSKAYHLRGLLLHG-LGQ---------------HKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       578 l~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~  618 (741)
                      -++ -|+.+...+..|.+..+ .++               -..|.+.+.+|++.+|--
T Consensus       322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence            443 35666666665554433 111               234778999999998765

The molecular function of this protein is uncertain.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=5.3e-05  Score=69.10  Aligned_cols=94  Identities=20%  Similarity=0.180  Sum_probs=75.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  464 (741)
                      -..|..++....|..|+.+|.+++..+|..+..+.+.+.|+++..+++.+.....+++++.|+....++.+|.+......
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34566777777888888888888888888778888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhh
Q 004622          465 SVEAIQDLSKALEF  478 (741)
Q Consensus       465 ~~~A~~~~~~al~~  478 (741)
                      +++|+..+.++..+
T Consensus        94 ~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   94 YDEAIKVLQRAYSL  107 (284)
T ss_pred             ccHHHHHHHHHHHH
Confidence            88888888887554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.86  E-value=0.00056  Score=68.10  Aligned_cols=131  Identities=10%  Similarity=0.001  Sum_probs=59.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004622          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (741)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  531 (741)
                      ..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|.++|+.+++..|.+...|......+...+
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~   84 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN   84 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence            3333344444444455555555543333344444444444333 233333555555555555555554444444445555


Q ss_pred             CHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622          532 EYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  583 (741)
                      +.+.|...|++++..-|...   .+|......-...|+.+...++.+++.+..|.
T Consensus        85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            55555555555544433322   34444455555555555555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=2.8e-05  Score=49.14  Aligned_cols=32  Identities=34%  Similarity=0.468  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622          104 QAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  135 (741)
                      .+++.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.85  E-value=0.0006  Score=67.89  Aligned_cols=136  Identities=15%  Similarity=0.035  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004622          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (741)
Q Consensus       417 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (741)
                      +|..+.....+.+..+.|...|.++.+..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566666777777778888888888886656667788888888666 4555558888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 004622          496 FKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (741)
Q Consensus       496 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  552 (741)
                      .|+.+.|..+|++++..-|...   .+|......-...|+.+....+.+++.+..|+...
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            8888888888888887766544   56777777777888888888888888888777443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.82  E-value=3.3e-05  Score=48.79  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (741)
Q Consensus        70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  102 (741)
                      ..|+++|.+|..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            568999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.78  E-value=0.021  Score=59.66  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc------
Q 004622          481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RN------  549 (741)
Q Consensus       481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~------  549 (741)
                      .....+...+.+..+.|.++.|...+.++...++.    .+.+.+..+.++...|+..+|+..++..+... ..      
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            34566777777777777777777777777665421    35566666777777777777777777666511 00      


Q ss_pred             ---------------------------cHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 004622          550 ---------------------------FLEAWGHLTQFYQDL------ANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (741)
Q Consensus       550 ---------------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  596 (741)
                                                 ...++..+|......      +..++++..|.++++..|....+|+..|..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence                                       123445555555555      66777777777777777777777777776655


Q ss_pred             H
Q 004622          597 G  597 (741)
Q Consensus       597 ~  597 (741)
                      .
T Consensus       304 ~  304 (352)
T PF02259_consen  304 K  304 (352)
T ss_pred             H
Confidence            4

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.0075  Score=55.71  Aligned_cols=29  Identities=14%  Similarity=0.020  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622          416 EALIGRGTARAFQRELEAAISDFTEAIQS  444 (741)
Q Consensus       416 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~  444 (741)
                      ..|..-+.+|....++++|..++.++.+-
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~   60 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG   60 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            34445555555666666666666666543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.74  E-value=7.4e-05  Score=47.17  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622          104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  136 (741)
                      .+++.+|.++..+|++++|+..|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.73  E-value=8.4e-05  Score=50.10  Aligned_cols=40  Identities=25%  Similarity=0.164  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRG  422 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  422 (741)
                      .++.+|..+...|++++|++.|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4455555555555555555555555555555555555554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.70  E-value=0.088  Score=54.64  Aligned_cols=217  Identities=11%  Similarity=-0.009  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcC-
Q 004622          400 AISIFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNP-SAGEAWKRRGQARAALG-  463 (741)
Q Consensus       400 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~-  463 (741)
                      -.-.|++++..-+-.+++|+..+..+...++              .+++..+|++++..-. .+...++.++..-...- 
T Consensus       264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~  343 (656)
T KOG1914|consen  264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD  343 (656)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence            3345777887778888888887777776666              7788888998886432 23344445544433322 


Q ss_pred             --ChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHH
Q 004622          464 --ESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEA  539 (741)
Q Consensus       464 --~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~  539 (741)
                        +++.....+++++.+...++ -++..+-..-.+..-...|...|.++-+..-....++..-|. -|...++..-|..+
T Consensus       344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrI  423 (656)
T KOG1914|consen  344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRI  423 (656)
T ss_pred             cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHH
Confidence              36777788888887654443 345555556666667788999999987754333344433333 35568999999999


Q ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--Ccc-cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  616 (741)
                      |+-.++..++.+..-......+...++-..|...|++++..  .|+ ...+|..+-..-..-|+....++.=++-....|
T Consensus       424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            99999999999998888899999999999999999999976  433 357788888888888999988888777665555

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00034  Score=64.16  Aligned_cols=120  Identities=16%  Similarity=0.063  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 004622          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (741)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (741)
                      ..++...|+-+++.|+|.+|...|+.++..-          -.+..+.+-.+      .+.++++......+.++++|+.
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l----------~~L~lkEkP~e------~eW~eLdk~~tpLllNy~QC~L  241 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICL----------RNLQLKEKPGE------PEWLELDKMITPLLLNYCQCLL  241 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHH----------HHHHhccCCCC------hHHHHHHHhhhHHHHhHHHHHh
Confidence            5577778888888888888888888776421          00000000000      0112223333557788888899


Q ss_pred             HcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       563 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ..|+|-++++.....+..+|.+..+++..|.++...-+..+|...|.++++++|.-
T Consensus       242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            99999999999999999999999999999999988889999999999999988875

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.68  E-value=0.034  Score=58.04  Aligned_cols=120  Identities=17%  Similarity=0.264  Sum_probs=90.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC----
Q 004622          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKL-DKE----  515 (741)
Q Consensus       445 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~----  515 (741)
                      .......+...+.+....|.++.|...+.++....+.    .+.+.+..+.++...|+..+|+..++..+.. ...    
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            3345667888888888888888888888888776521    4677778888888888888888888877761 110    


Q ss_pred             ----------------------C-------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 004622          516 ----------------------N-------KSAYTYLGLALSSI------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (741)
Q Consensus       516 ----------------------~-------~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~  560 (741)
                                            .       ..++..+|......      +..++++..|.++++.+|....+|+.+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                  0       13455566666666      888999999999999999999999998887


Q ss_pred             HHHc
Q 004622          561 YQDL  564 (741)
Q Consensus       561 ~~~~  564 (741)
                      +...
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            6543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.66  E-value=0.00011  Score=74.49  Aligned_cols=110  Identities=22%  Similarity=0.070  Sum_probs=95.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhh---hcHHHHHHHHHHHHHhCCCChh
Q 004622           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQ  104 (741)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~  104 (741)
                      ...+++....-+.+++..|..+.+..||..|.+++... ....++.|||.++++.   |+.-.|+.+|-.++++||...+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k  446 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK  446 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence            34445545555688999999999999999999999877 6778899999999987   7888999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622          105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      |+++++.++..++++.+|+.....+....|.+..
T Consensus       447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            9999999999999999999988887777776655

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.65  E-value=0.0077  Score=60.99  Aligned_cols=181  Identities=14%  Similarity=-0.003  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCChHHHHHHHHH-HHhhCCCCHHHH
Q 004622          415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA---LGESVEAIQDLSK-ALEFEPNSADIL  486 (741)
Q Consensus       415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~  486 (741)
                      +++...+-.+|....+|+.-++..+..-..    -++.+.+.+.+|.++.+   .|+.++|+..+.. .....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            566777778888999999888888877665    44566677788888888   8899999999988 445566778888


Q ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 004622          487 HERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL  557 (741)
Q Consensus       487 ~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  557 (741)
                      ..+|.+|-..         ...++|+..|.++.+.+|+. ..-.+++.++...|...+...-+++..          ..+
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l  289 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG----------VKL  289 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH----------HHH
Confidence            8888887532         12445555555555555322 222223333333332111111111110          001


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       558 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      .....+.|..+            .-.+-+.+..++.+..-.|++++|++++++++...|+.
T Consensus       290 ~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  290 SSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            11111111100            11223444556666677778888888888877777665

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0093  Score=55.72  Aligned_cols=204  Identities=17%  Similarity=0.202  Sum_probs=155.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH-HHH
Q 004622          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI  469 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-~A~  469 (741)
                      .....-..|+.+-..++..+|.+..+|...-.++..++ +..+-++++...++.+|.+..+|...-.+....|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34456678889999999999999988888777776654 6778889999999999999999999988888889888 888


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHH
Q 004622          470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG-----EYKKAEEAHLKA  543 (741)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~-----~~~~A~~~~~~a  543 (741)
                      +..+.++..+..+-.+|...-.+....+.|+.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+.
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~  213 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK  213 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877766666543222211 11     234456677888


Q ss_pred             HHhCcccHHHHHHHHHHHHH-cC--ChHHHHHHHHHHH-hhCcccHHHHHHHHHHH
Q 004622          544 IQLDRNFLEAWGHLTQFYQD-LA--NSEKALECLQQVL-YIDKRFSKAYHLRGLLL  595 (741)
Q Consensus       544 l~~~~~~~~~~~~la~~~~~-~~--~~~~A~~~~~~al-~~~p~~~~~~~~la~~~  595 (741)
                      +...|++..+|..|.-++.. .|  .+.+-.......+ ......|..+-.+..+|
T Consensus       214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY  269 (318)
T ss_pred             HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence            88999999999999888876 44  2444555555544 22334455555555555

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.60  E-value=0.00011  Score=74.60  Aligned_cols=107  Identities=24%  Similarity=0.352  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  465 (741)
                      ..+...+..++|+.|+..|.++++++|+++..+...+..+.+.+++..|+..+.++++.+|....+|+..|.+....+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            55677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004622          466 VEAIQDLSKALEFEPNSADILHERGIV  492 (741)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~  492 (741)
                      .+|...|+....+.|+++.+...+..+
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            999999999999999998887666554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0004  Score=66.79  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=88.1

Q ss_pred             cCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc
Q 004622          300 QTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI  379 (741)
Q Consensus       300 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  379 (741)
                      ...+.+..++.-|+.+|+.++|..|+..|.+.+.....|+..                                      
T Consensus        76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl--------------------------------------  117 (390)
T KOG0551|consen   76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL--------------------------------------  117 (390)
T ss_pred             ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH--------------------------------------
Confidence            334578889999999999999999999999999876555441                                      


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 004622          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (741)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~  446 (741)
                      ++..|.++|-+.+..|+|..|+..+.+++..+|.+..+++.-+.|++.+.++++|..+++..+..+.
T Consensus       118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            2334556777778888899999999999999999999999999999999999999988888766543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.58  E-value=0.00015  Score=45.66  Aligned_cols=33  Identities=30%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (741)
Q Consensus        70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  102 (741)
                      ..++.+|.++.++|++++|+..+++++.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            568899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.55  E-value=0.0039  Score=64.56  Aligned_cols=111  Identities=15%  Similarity=0.011  Sum_probs=90.1

Q ss_pred             HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 004622          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (741)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~  449 (741)
                      ...+..+.+...+..-+..+...|+..+|..++..++-..|...  .++..+|.++.+.|...+|--.+..++...|...
T Consensus       204 ~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t  283 (886)
T KOG4507|consen  204 EGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT  283 (886)
T ss_pred             HhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence            33445556666666556666678999999999999998877653  5778899999999999999999988888777766


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (741)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (741)
                      .-++.++.++...+++......|..+.+..|..
T Consensus       284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             ccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            678899999999999999999999888888753

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.54  E-value=8.9e-05  Score=46.44  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=15.4

Q ss_pred             HHHHHhhCcccHHHHHHHHHHHHHCCChHHH
Q 004622          574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (741)
Q Consensus       574 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  604 (741)
                      |+++++++|+++.+|+++|.+|...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            3444455555555555555555555555444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.011  Score=56.82  Aligned_cols=150  Identities=17%  Similarity=0.152  Sum_probs=102.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH--H
Q 004622          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG--Q  457 (741)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la--~  457 (741)
                      ..+.-+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+...-....+. ......+  .
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~  211 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIE  211 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHH
Confidence            344556677788899999999999999999999999999999999999999999988776643222221 1111111  2


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 004622          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG  531 (741)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~  531 (741)
                      .+.+.....+. ..+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+..  +..+...+-.++...|
T Consensus       212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            22222222221 2345556678888888888888888888888888888887776443  3344444444444444

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.52  E-value=0.27  Score=55.27  Aligned_cols=290  Identities=11%  Similarity=0.003  Sum_probs=188.3

Q ss_pred             cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cH
Q 004622          380 SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AG  449 (741)
Q Consensus       380 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~  449 (741)
                      .+.+.+.+|.+++ ...+++.|..++++++.....+      ..+.+.++.++.+.+... |...+++.++...+   ..
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~  136 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA  136 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence            3457889999988 6899999999999998876432      234567788888888777 99999999886544   22


Q ss_pred             H-HHHHH--HHHHHHcCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 004622          450 E-AWKRR--GQARAALGESVEAIQDLSKALEFE--PNSADI----LHERGIVNFKFKDFNAAVEDLSACVKLDK------  514 (741)
Q Consensus       450 ~-~~~~l--a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p------  514 (741)
                      . ..+.+  .......+++..|++.++......  +.++.+    ....+.+....+..+++++.++++.....      
T Consensus       137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~  216 (608)
T PF10345_consen  137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP  216 (608)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence            2 12222  333333479999999999998876  344433    33446677778888889988888854321      


Q ss_pred             C----CHHHHHHH--HHHHHHcCCHHHHHHHHHHHH---Hh---Cc---c---c-----------------H--------
Q 004622          515 E----NKSAYTYL--GLALSSIGEYKKAEEAHLKAI---QL---DR---N---F-----------------L--------  551 (741)
Q Consensus       515 ~----~~~~~~~l--a~~~~~~~~~~~A~~~~~~al---~~---~~---~---~-----------------~--------  551 (741)
                      +    ...++..+  -.++...|+++.+...+++.-   ..   .+   .   +                 +        
T Consensus       217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~  296 (608)
T PF10345_consen  217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK  296 (608)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence            1    12333333  234566788777766554432   11   11   0   0                 0        


Q ss_pred             -----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc--------------------------HHHHHHHHHHHHHCCC
Q 004622          552 -----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--------------------------SKAYHLRGLLLHGLGQ  600 (741)
Q Consensus       552 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------~~~~~~la~~~~~~g~  600 (741)
                           -++..-|......+..++|.++++++++.-.+.                          ....+..+.+..-.++
T Consensus       297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~  376 (608)
T PF10345_consen  297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD  376 (608)
T ss_pred             HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence                 122333455566677778888888887541110                          1235667888888999


Q ss_pred             hHHHHHHHHHhhhhc---CC----chHHHHHHHHHHHHHhCCCHHHHHHHHH--------hhccCCc------ccchhhH
Q 004622          601 HKKAIKDLSSGSRTM---MP----HLIWNLTRWRNLCFNAWPFIRRRLLCTR--------LLKSTVS------FAGLTLM  659 (741)
Q Consensus       601 ~~~A~~~~~~al~~~---~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~~~~~~~------~~~~~l~  659 (741)
                      +..|...++.+....   |.    .....+++..|..+...|+.+.|...|.        ......+      .+..++.
T Consensus       377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~  456 (608)
T PF10345_consen  377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA  456 (608)
T ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence            999999988876542   22    1223448889999999999999998886        3333333      3556666


Q ss_pred             HHHhcCCCchh
Q 004622          660 EILIPSSRNIG  670 (741)
Q Consensus       660 ~~~~~~g~~~~  670 (741)
                      -++...+.-.+
T Consensus       457 ~I~~~~~~~~~  467 (608)
T PF10345_consen  457 IILQYESSRDD  467 (608)
T ss_pred             HHhHhhcccch
Confidence            66666655433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.081  Score=49.71  Aligned_cols=122  Identities=11%  Similarity=0.048  Sum_probs=60.6

Q ss_pred             CChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc-HHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCH
Q 004622          319 NDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM-LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKY  397 (741)
Q Consensus       319 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~  397 (741)
                      ..-..|+.+-..++..+|.+-+++...-.++..++. ..+.++        .+..+...+|.+..+|...-.+....|++
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~--------~l~eI~e~npKNYQvWHHRr~ive~l~d~  128 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELE--------YLDEIIEDNPKNYQVWHHRRVIVELLGDP  128 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence            344455555666666666655555555444433322 222222        44444455555555555444444444544


Q ss_pred             H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622          398 A-SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (741)
Q Consensus       398 ~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~  448 (741)
                      . .-+++.+.++..+.++..+|...-.+....+.++.-+.+....++.+-.+
T Consensus       129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N  180 (318)
T KOG0530|consen  129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN  180 (318)
T ss_pred             ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence            4 44455555555555555555555555555555555555555555444333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.081  Score=58.82  Aligned_cols=144  Identities=21%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004622          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (741)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  459 (741)
                      .+..|..+|.+.+..|...+|++.|-++     ++|..|.....+..+.|.|++-+.++.-+.+... .+.+-..+..+|
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence            3455666666666666666666665443     3355555555666666666666666555544321 111222233334


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (741)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  539 (741)
                      ...++..+-.+.+     ..|+.+. ....|.-++..|.|+.|.-+|..        ..-|..++..+..+|+|..|...
T Consensus      1177 Akt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred             HHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444443332222     2333322 33455556666666666555543        23345566666677777777766


Q ss_pred             HHHH
Q 004622          540 HLKA  543 (741)
Q Consensus       540 ~~~a  543 (741)
                      .+++
T Consensus      1243 aRKA 1246 (1666)
T KOG0985|consen 1243 ARKA 1246 (1666)
T ss_pred             hhhc
Confidence            6655

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.2  Score=51.37  Aligned_cols=354  Identities=12%  Similarity=0.033  Sum_probs=203.4

Q ss_pred             hhhHHHhcC-ChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHh-hccCCc---cH
Q 004622          311 LSSDSASLN-DSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRI-SKSKSI---SV  381 (741)
Q Consensus       311 lg~~~~~~~-~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~---~~  381 (741)
                      ++..+.... .+..|...+.+++++....+-    ....++.+..-..++..|.+.        +..- ...++.   ..
T Consensus        94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el--------Lavga~sAd~~~~~yl  165 (629)
T KOG2300|consen   94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL--------LAVGAESADHICFPYL  165 (629)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH--------HhccccccchhhhHHH
Confidence            344444333 667788888888888766553    344566666666666666662        1111 111111   11


Q ss_pred             HHHH--HHHHHHHHcCCHH---HHHHHHHHHHHhCCCCH-------HHHHHHHHHH-HHcccHHHHHHHHHHH---HHh-
Q 004622          382 DFRL--SRGIAQVNEGKYA---SAISIFDQILKEDPMYP-------EALIGRGTAR-AFQRELEAAISDFTEA---IQS-  444 (741)
Q Consensus       382 ~~~~--~~a~~~~~~g~~~---~A~~~~~~al~~~p~~~-------~~~~~la~~~-~~~~~~~~A~~~~~~~---l~~-  444 (741)
                      ..++  ..+..+....+..   .+...+.++.+....++       ..+..+-.+| ...|+...+...+++.   +.. 
T Consensus       166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti  245 (629)
T KOG2300|consen  166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI  245 (629)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence            2222  3333444444433   44444444444333332       2233333333 3456666555555433   221 


Q ss_pred             CCC------------cH-----------HHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCC------CHH--------H
Q 004622          445 NPS------------AG-----------EAWKRRGQA--RAALGESVEAIQDLSKALEFEPN------SAD--------I  485 (741)
Q Consensus       445 ~~~------------~~-----------~~~~~la~~--~~~~~~~~~A~~~~~~al~~~p~------~~~--------~  485 (741)
                      .+.            .+           .++..+-.+  -+..|-+++|.++-++++.....      ...        .
T Consensus       246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~  325 (629)
T KOG2300|consen  246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL  325 (629)
T ss_pred             CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence            110            00           111111111  12346678888888877765311      112        3


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-c--HH
Q 004622          486 LHERGIVNFKFKDFNAAVEDLSACVKL---DKE-------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-F--LE  552 (741)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~  552 (741)
                      +-.+..+-.-.|++.+|++....+.+.   .|.       .+..++.+|......+.++.|...|..+.+.... +  ..
T Consensus       326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~  405 (629)
T KOG2300|consen  326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF  405 (629)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence            445566777889999999888877664   444       2356777888888899999999999999887533 2  33


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCccc----------HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc----
Q 004622          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----------SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH----  618 (741)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----  618 (741)
                      ...++|.+|...|+-+.--+.++   .+.|.+          ..+++..|...+..+++.+|...+.+.++.....    
T Consensus       406 ~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r  482 (629)
T KOG2300|consen  406 CNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR  482 (629)
T ss_pred             HHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence            45678999999887654444333   344432          4567888999999999999999999999875322    


Q ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHh---hccCCc------ccchhhHHHHhcCCC--chhHhhhH
Q 004622          619 LIWNLTRWRNLCFNAWPFIRRRLLCTRL---LKSTVS------FAGLTLMEILIPSSR--NIGAKDCI  675 (741)
Q Consensus       619 ~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~------~~~~~l~~~~~~~g~--~~~A~~~~  675 (741)
                      .....+..++.+....|+..++...-+-   +....|      ++..-+-.++...|.  .....+.|
T Consensus       483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~  550 (629)
T KOG2300|consen  483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF  550 (629)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence            1222366789999999999998743322   122222      122233456666776  44444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.0028  Score=56.60  Aligned_cols=100  Identities=26%  Similarity=0.212  Sum_probs=78.1

Q ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHHhccCChhh----HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChh-HHHHHH
Q 004622           37 ITARIELAK-LCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-AYILKG  110 (741)
Q Consensus        37 ~~~~~~~~~-~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~~g  110 (741)
                      .....++++ +++.|++++|+..++.++....+...    -.++|++.+..|.+++|+..++....  +++.. .--.+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence            333444444 56999999999999999986633322    47899999999999999998877543  33322 366799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622          111 CAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      .++...|+-++|+..|++++..++++..
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            9999999999999999999999866544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.39  E-value=0.078  Score=58.44  Aligned_cols=260  Identities=15%  Similarity=0.011  Sum_probs=173.2

Q ss_pred             cHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHh
Q 004622          380 SVDFRLSRGIAQVN-----EGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQS  444 (741)
Q Consensus       380 ~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~  444 (741)
                      +......+|.++..     ..|.+.|+.+|+.+...     ...++.+.+.+|.+|.+..     +...|+.++.++.+.
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            34455566766664     36899999999998771     1114667888999998853     678899999998776


Q ss_pred             CCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCH
Q 004622          445 NPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENK  517 (741)
Q Consensus       445 ~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~  517 (741)
                      .  ++.+.+.+|.++....   ++..|..+|..+....  +..+.+.++.+|..-    .+...|..++.++.+.+  ++
T Consensus       323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~  396 (552)
T KOG1550|consen  323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NP  396 (552)
T ss_pred             C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Ch
Confidence            4  5677888899887655   5689999999888765  688888899888643    47889999999999887  45


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHH---HHH-HHHHHHHH----cCChHHHHHHHHHHHhhCcccHHHH
Q 004622          518 SAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQD----LANSEKALECLQQVLYIDKRFSKAY  588 (741)
Q Consensus       518 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~---~~~-~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  588 (741)
                      .+...++..+... +.++.+...+....+..-..+.   ++. ........    ..+...+...+.++..  ..+..+.
T Consensus       397 ~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~  474 (552)
T KOG1550|consen  397 SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAI  474 (552)
T ss_pred             hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHH
Confidence            5555555554432 7777776666555444322211   111 11101111    1244556666665543  4557778


Q ss_pred             HHHHHHHHHC----CChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhC-C--CHHHHHHHHHhhccCCc
Q 004622          589 HLRGLLLHGL----GQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAW-P--FIRRRLLCTRLLKSTVS  652 (741)
Q Consensus       589 ~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~~~~~~~  652 (741)
                      ..+|.+|..-    .+++.|...|.++....    ... .+.+|.++..- |  ....|..++........
T Consensus       475 ~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~-~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~  540 (552)
T KOG1550|consen  475 LKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQA-LFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS  540 (552)
T ss_pred             hhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHH-HhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence            8888888765    45888999998887776    244 77888888532 2  14666666666555444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.014  Score=55.97  Aligned_cols=125  Identities=18%  Similarity=0.120  Sum_probs=54.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCChH
Q 004622          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-EAWGHLTQFYQDLANSE  568 (741)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~  568 (741)
                      +.-....|++.+|...+..++...|++..+...++.++...|+.+.|...+...-....... .........+.+.....
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            33344445555555555555555555555555555555555555544444433211111110 00000111122222221


Q ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      +. ..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+
T Consensus       221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            11 12333444556666666666666666666666666555555543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.35  E-value=0.26  Score=54.69  Aligned_cols=232  Identities=15%  Similarity=0.032  Sum_probs=138.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--
Q 004622          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--Y-------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--  448 (741)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--  448 (741)
                      ++...+..++......++.+|..+..++...-+.  .       .......|.+....|+++.|++..+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            3455667788888888888888888887664433  1       2444556777788888888888888888876654  


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----hC
Q 004622          449 ---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--FNAAVEDLSACVK----LD  513 (741)
Q Consensus       449 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--~~~A~~~~~~al~----~~  513 (741)
                         ..+...+|.+..-.|++++|..+...+.+.....      ..+....+.++..+|+  +.+....+...-.    ..
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~  573 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK  573 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence               3456677888888888888888888877763221      2234445677777773  3333333333222    23


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc--
Q 004622          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--  584 (741)
Q Consensus       514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  584 (741)
                      |.+.......+.++...-+++.+..-....++..    |...   -.++.++.+.+..|++++|...+..........  
T Consensus       574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~  653 (894)
T COG2909         574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY  653 (894)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence            3333232223333222222555555444444432    2221   123478888888888888888887776542221  


Q ss_pred             -----HHHHHHHHHHHHHCCChHHHHHHHHHh
Q 004622          585 -----SKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (741)
Q Consensus       585 -----~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (741)
                           ..++..........|+...|.....+.
T Consensus       654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence                 111222233344567888877777764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.34  E-value=0.00044  Score=43.52  Aligned_cols=33  Identities=36%  Similarity=0.468  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622          104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  136 (741)
                      ++++.+|.+|..+|++++|+..|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            467777777777777777777777777777743

...

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.34  E-value=0.4  Score=53.24  Aligned_cols=231  Identities=14%  Similarity=0.010  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 004622          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---  482 (741)
Q Consensus       415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  482 (741)
                      |......+.......++.+|..++.++...-+.         ........|.+....|++++|++..+.++..-|.+   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            455566777788888888888888887654333         12344556777788899999999999998887765   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----hCc
Q 004622          483 --ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--YKKAEEAHLKAIQ----LDR  548 (741)
Q Consensus       483 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--~~~A~~~~~~al~----~~~  548 (741)
                        ..++..+|.+..-.|++++|..+...+.+.....      ..+....+.++..+|+  +.+....+...-.    ..|
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~  574 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP  574 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence              3467778888888899999998888887763322      2334445777777883  2333333333222    223


Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----Cccc--HH-HHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc---
Q 004622          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYI----DKRF--SK-AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH---  618 (741)
Q Consensus       549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  618 (741)
                      -+.......+.++...-+++.+.......++.    .|..  .. ++..++.+....|+.++|...+.+...+....   
T Consensus       575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~  654 (894)
T COG2909         575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH  654 (894)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence            33233333333333322355555444444433    2322  22 23478888999999999988888876543211   


Q ss_pred             --hHHHHHHHHHHHHHhCCCHHHHH-HHHH
Q 004622          619 --LIWNLTRWRNLCFNAWPFIRRRL-LCTR  645 (741)
Q Consensus       619 --~~~~~~~~la~~~~~~g~~~~A~-~~~~  645 (741)
                        ....++.-........|+...|. +.++
T Consensus       655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence              11221222333446778888877 4444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.32  E-value=0.012  Score=63.27  Aligned_cols=152  Identities=11%  Similarity=-0.069  Sum_probs=113.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 004622          495 KFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (741)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  563 (741)
                      -.|+-+.++..+.++.+...-. +.+      ++.....+.    .....+.|...+.......|+..-.++..|+++..
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~  279 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL  279 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            4577788888888876632111 111      111111111    24567889999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCH--
Q 004622          564 LANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFI--  637 (741)
Q Consensus       564 ~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~--  637 (741)
                      .|+.++|++.|++++......    .-.++.+++++..+.+|++|..+|.+..+.+.-. .....|..|.|+...|+.  
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~~~~~  358 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLGREEE  358 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccchh
Confidence            999999999999988543332    3457889999999999999999999999876544 333366778999999999  


Q ss_pred             -----HHHHHHHHhh
Q 004622          638 -----RRRLLCTRLL  647 (741)
Q Consensus       638 -----~~A~~~~~~~  647 (741)
                           ++|..+++.+
T Consensus       359 ~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  359 AKEHKKEAEELFRKV  373 (468)
T ss_pred             hhhhHHHHHHHHHHH
Confidence                 7777666654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.29  E-value=0.23  Score=49.51  Aligned_cols=123  Identities=12%  Similarity=0.004  Sum_probs=84.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhC----C---C-------c
Q 004622          392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----P---S-------A  448 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~----~---~-------~  448 (741)
                      ...|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.+.-    +   .       .
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            56788999999998886644    222    356677777778888 8889988888887762    1   1       1


Q ss_pred             HHHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004622          449 GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (741)
Q Consensus       449 ~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  514 (741)
                      ..++..++.++...+.++   +|...++.+-...|+.+.++...-.+..+.++.+.+.+.+.+++...+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            235667777787776644   455555566666677777765555555567788888888888877543

It is also involved in sporulation [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.041  Score=49.43  Aligned_cols=117  Identities=16%  Similarity=0.094  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHH
Q 004622          501 AAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECL  574 (741)
Q Consensus       501 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~  574 (741)
                      +......+....+|.+.   .+...++..+...+++++|+..++.++....+.   .-+-.+++.+....|++++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444555555555554   334557888888899999999999888654432   335678899999999999998877


Q ss_pred             HHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       575 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ....... -.+..-...|.++...|+.++|...|++++..+++.
T Consensus       150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            6543211 113345678999999999999999999999887554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.16  E-value=0.011  Score=47.80  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CChh----------hHHHHHHHHHhhhcHHHHHHHHHHHHHh----
Q 004622           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS---YEIQ----------DICNRAFCYSQLELHKHVIRDCDKALQL----   98 (741)
Q Consensus        36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~---~~~~----------~~~~~a~~~~~~g~~~~A~~~~~~al~~----   98 (741)
                      +|-.-.++-+-+..|-|++|..-|.+|+++.   |...          ++..++.++..+|+|++++...+++|.-    
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            4555577778899999999999999998844   2222          2467888999999999999888888753    


Q ss_pred             ---CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622           99 ---DPT----LLQAYILKGCAFSALGRKEEALSVWEKGYE  131 (741)
Q Consensus        99 ---~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  131 (741)
                         +.+    |+.+.+.+|.++..+|+.++|+..|+.+-+
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence               333    355889999999999999999999999643

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.15  E-value=0.29  Score=49.43  Aligned_cols=166  Identities=20%  Similarity=0.066  Sum_probs=95.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----c
Q 004622          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----L  462 (741)
Q Consensus       391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~  462 (741)
                      ....+++..|...+..+-..  ..+.....++.+|...    .+..+|..+|+.+.  ...++.+.+.+|.+|..    .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence            34567778888887776652  2235666677766644    35677777777443  34556677777777765    3


Q ss_pred             CChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 004622          463 GESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----I  530 (741)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~  530 (741)
                      .+..+|..+|+++....-.. ....+.+|..|..-.       +...|...|.++-...  ++.+.+.+|.+|..    .
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence            36777777777777765333 233666666665431       1224555555555443  45555555555533    2


Q ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Q 004622          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (741)
Q Consensus       531 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~  565 (741)
                      .++.+|..+|.++-+...  ....+.++ ++...|
T Consensus       205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            355566666666555444  44555555 444333

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.12  E-value=0.55  Score=57.78  Aligned_cols=122  Identities=13%  Similarity=0.062  Sum_probs=92.1

Q ss_pred             hhhhhHHHHHhhh-hhhhhhhhhhhhhHHHH--HHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHH
Q 004622            3 KRKLLDSRYRLNK-THKTICEIDELVRVDSV--MASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFC   78 (741)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~   78 (741)
                      ++-+.++.+.+.+ .+-.|++.|.+-.+-++  ......+.+.  ..-..|+|+.|..+|++++..+ ++...+...-.+
T Consensus      1415 ~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil--~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~s 1492 (2382)
T KOG0890|consen 1415 EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQIL--EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKS 1492 (2382)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHH--HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHh
Confidence            3456778888888 99999999999998884  3333333344  3557899999999999999998 556667777788


Q ss_pred             HHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH-HHHHHcCCHHHHHHHH
Q 004622           79 YSQLELHKHVIRDCDKALQLDPTLLQAYILKG-CAFSALGRKEEALSVW  126 (741)
Q Consensus        79 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g-~~~~~~g~~~~A~~~~  126 (741)
                      -+..|.+...+...+-.....++..+-++.+| .+-..++++|.-....
T Consensus      1493 ml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1493 MLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             hhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            89999999999988888777777777555544 3447788887665443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.11  E-value=0.13  Score=56.86  Aligned_cols=175  Identities=21%  Similarity=0.071  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC---
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG---  463 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~---  463 (741)
                      ...|..+++.+...  .+..+...+|.+|..-     .+.+.|+.+++.+...     .-.++.+.+.+|.+|....   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            45677777766543  3456666777776644     4777788888777651     1113445666777776632   


Q ss_pred             --ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 004622          464 --ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYK  534 (741)
Q Consensus       464 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~  534 (741)
                        +...|+.++.++-...  ++++.+.+|.++..-.   ++..|.++|..+...  .+..+.+.++.+|..    ..+..
T Consensus       306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence              4566777777666654  4556666666665544   456677777766653  456666666666654    34566


Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 004622          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLY  579 (741)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~  579 (741)
                      .|..++.++.+..  .+.+...++.++..- +.+..+...+.....
T Consensus       382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence            7777777776665  344444444444332 555555544444433

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.10  E-value=0.16  Score=51.27  Aligned_cols=184  Identities=22%  Similarity=0.150  Sum_probs=127.7

Q ss_pred             HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cC
Q 004622          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FK  497 (741)
Q Consensus       426 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~  497 (741)
                      ...+.+..|...+..+-..  .++.....++.+|...    .+..+|..+|..+.  ...++...+.+|.+|..    ..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~  127 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL  127 (292)
T ss_pred             cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence            4556778888888877652  2336677777777653    35788999998444  44567888889988887    45


Q ss_pred             CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cC
Q 004622          498 DFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIG-------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LA  565 (741)
Q Consensus       498 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~  565 (741)
                      +..+|..+|.++....-.. ..+.+.+|..|..-.       +...|...|.++-...  ++.+...+|.+|..    ..
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~  205 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR  205 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence            8899999999998874433 344777777776642       2336788888877665  56777888877755    34


Q ss_pred             ChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC---------------ChHHHHHHHHHhhhhcCCc
Q 004622          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---------------QHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~~  618 (741)
                      ++.+|..+|.++-+...  ....+.++ ++...|               +...|..++..+....+..
T Consensus       206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence            78888888888887665  67777777 666555               5555666666665554443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.04  E-value=0.48  Score=48.41  Aligned_cols=84  Identities=10%  Similarity=-0.041  Sum_probs=59.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhccCCh-h-----hHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622           46 LCSLRNWSKAIRILDSLLAQSYEI-Q-----DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (741)
Q Consensus        46 ~~~~g~~~~Ai~~~~~al~~~~~~-~-----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~  119 (741)
                      +=++|++++|..+|++...-..+. .     .+.+|-.--+=+.+.+.--...-..-+..|+.+...+..|....+.|++
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~   95 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY   95 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence            447899999999999987755333 2     2344443223334454444444455556788888899999999999999


Q ss_pred             HHHHHHHHHH
Q 004622          120 EEALSVWEKG  129 (741)
Q Consensus       120 ~~A~~~~~~a  129 (741)
                      +.|++.+..-
T Consensus        96 ~kal~~ls~w  105 (549)
T PF07079_consen   96 RKALQALSVW  105 (549)
T ss_pred             HHHHHHHHHH
Confidence            9999888764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.03  E-value=0.016  Score=51.48  Aligned_cols=59  Identities=19%  Similarity=0.122  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (741)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (741)
                      +...++..+...|++++|+..+.+++..+|.+..++..+..+|...|+..+|+..|+++
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555555554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.00  E-value=0.025  Score=50.24  Aligned_cols=57  Identities=25%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (741)
Q Consensus       521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (741)
                      ..++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            334444445555555555555555555555555555555555555555555555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.00  E-value=0.003  Score=43.91  Aligned_cols=37  Identities=27%  Similarity=0.280  Sum_probs=17.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHH
Q 004622           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL  108 (741)
Q Consensus        72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  108 (741)
                      ++.+|..+.++|+|++|...++.+|+.+|+|.+|...
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3444555555555555555555555555555544433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.97  E-value=0.0013  Score=41.29  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (741)
Q Consensus        70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  102 (741)
                      ..|+.+|.+|..+|++++|+..++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            468899999999999999999999999999964

...

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.89  E-value=0.75  Score=56.66  Aligned_cols=334  Identities=12%  Similarity=-0.005  Sum_probs=190.9

Q ss_pred             hhhhHHHhcCChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622          310 KLSSDSASLNDSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL  385 (741)
Q Consensus       310 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (741)
                      .++...++.+.|.+|+.++++- ...+....    .+..+-.+|...++.+.....        ... ....    ..+.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv--------~~~-r~a~----~sl~ 1453 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGV--------SAR-RFAD----PSLY 1453 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhH--------HHH-hhcC----ccHH
Confidence            5788889999999999999985 22222111    222333366666665554331        111 0001    1233


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCC
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG-QARAALGE  464 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~~~~~  464 (741)
                      ..-..+...|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+..++ .+-+..++
T Consensus      1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred             HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc
Confidence            44556677899999999999999999998888888888888888888888877766655555444444433 22355566


Q ss_pred             hHHHHHHHH-------------H-HHhhCCCCHHHH-HHHHHH----------HHHcCCHHHHHHHHHHHHHh-------
Q 004622          465 SVEAIQDLS-------------K-ALEFEPNSADIL-HERGIV----------NFKFKDFNAAVEDLSACVKL-------  512 (741)
Q Consensus       465 ~~~A~~~~~-------------~-al~~~p~~~~~~-~~la~~----------~~~~~~~~~A~~~~~~al~~-------  512 (741)
                      ++.-..+..             + .+.....+.-.. ..+...          ....|-|..+.++.-++...       
T Consensus      1534 wD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1534 WDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred             hhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            555444422             0 011111111100 011000          00111333333333332211       


Q ss_pred             ------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC----cccHHHHHHHHHHHHHcCChHHHHHHH
Q 004622          513 ------DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LD----RNFLEAWGHLTQFYQDLANSEKALECL  574 (741)
Q Consensus       513 ------~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~----~~~~~~~~~la~~~~~~~~~~~A~~~~  574 (741)
                            .+++     ..-|.+....-....+..+-+-.+++++-   .+    ..-...|...|++....|+++.|..++
T Consensus      1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred             HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence                  1111     12222222221112223444444555432   12    234679999999999999999999998


Q ss_pred             HHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc-CC----------c----hHHHHHHHHHHHHHhCCCHH-
Q 004622          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM-MP----------H----LIWNLTRWRNLCFNAWPFIR-  638 (741)
Q Consensus       575 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~----------~----~~~~~~~~la~~~~~~g~~~-  638 (741)
                      -.|.+..  -+.++...|..+...|+-..|+..+++.++.+ |+          .    ....+.+..+......|+++ 
T Consensus      1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred             Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence            8887766  46888999999999999999999999998654 22          1    01112444555556666653 


Q ss_pred             HHH-HHHHhhccCCc---ccchhhH
Q 004622          639 RRL-LCTRLLKSTVS---FAGLTLM  659 (741)
Q Consensus       639 ~A~-~~~~~~~~~~~---~~~~~l~  659 (741)
                      .++ .+|+.+....|   ..++.+|
T Consensus      1772 ~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             HHHHHHHHHHHHHcccccCceeeHH
Confidence            333 67777665555   3445555

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.89  E-value=0.00093  Score=64.76  Aligned_cols=94  Identities=28%  Similarity=0.392  Sum_probs=84.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 004622          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (741)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  466 (741)
                      .+.-.+..|.+++|++.|..++..+|.....+...+.++..+++...|+..+..++.++|+....+...+.....+|+|+
T Consensus       120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE  199 (377)
T ss_pred             HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence            45556778899999999999999999999999999999999999999999999999999999888888899999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 004622          467 EAIQDLSKALEFEP  480 (741)
Q Consensus       467 ~A~~~~~~al~~~p  480 (741)
                      +|...+..+.+++-
T Consensus       200 ~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  200 EAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999988764

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.88  E-value=0.83  Score=48.60  Aligned_cols=169  Identities=10%  Similarity=-0.076  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Q 004622          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQ  562 (741)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~  562 (741)
                      ..|......-...|+++...-.|++++--.......|...+......|+.+-|-..+..+.++. |..+.....-+.+-.
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            3455566666777888888888888877777777777777777777788877777777776664 555666666677777


Q ss_pred             HcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHH---HHHHHhhhhcCCc-hHHHHHHHHHHHH-HhCCCH
Q 004622          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI---KDLSSGSRTMMPH-LIWNLTRWRNLCF-NAWPFI  637 (741)
Q Consensus       563 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~-~~~~~~~~la~~~-~~~g~~  637 (741)
                      ..|++..|...+++..+..|+...+-..........|+.+.+.   +.+.....-..+. ....++...++.. .-.++.
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~  457 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA  457 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence            7778888888888887766777777666666777777777776   3333332211111 1223344444433 344556


Q ss_pred             HHHHHHHHhhccCCc
Q 004622          638 RRRLLCTRLLKSTVS  652 (741)
Q Consensus       638 ~~A~~~~~~~~~~~~  652 (741)
                      +.|........+..|
T Consensus       458 ~~a~~~l~~~~~~~~  472 (577)
T KOG1258|consen  458 DLARIILLEANDILP  472 (577)
T ss_pred             HHHHHHHHHhhhcCC
Confidence            666654444444433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.83  E-value=0.61  Score=46.48  Aligned_cols=130  Identities=14%  Similarity=0.020  Sum_probs=90.2

Q ss_pred             HhcCChhhHHHHHHHhhccC-CCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHc
Q 004622          316 ASLNDSNTNSESYSKSSISD-NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNE  394 (741)
Q Consensus       316 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  394 (741)
                      .++|+++.|..++.++-... ..++.....++                                   +.++..|......
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La-----------------------------------~~~yn~G~~l~~~   48 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELA-----------------------------------RVCYNIGKSLLSK   48 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHH-----------------------------------HHHHHHHHHHHHc
Confidence            45788888888888877655 33444333333                                   3455677778888


Q ss_pred             C-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHcccHH---HHHHHHHHHHHhCCCcHHHHHHHH
Q 004622          395 G-KYASAISIFDQILKE----DPM---Y-------PEALIGRGTARAFQRELE---AAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       395 g-~~~~A~~~~~~al~~----~p~---~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la  456 (741)
                      + +++.|...++++.+.    .+.   .       ..++..++.+|...+.++   +|...++.+-...|+.+..+...-
T Consensus        49 ~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l  128 (278)
T PF08631_consen   49 KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKL  128 (278)
T ss_pred             CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            8 999999999988876    211   1       356778888888877654   455556666666788777775555


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCC
Q 004622          457 QARAALGESVEAIQDLSKALEFEP  480 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p  480 (741)
                      .+....++.+.+.+.+.+++...+
T Consensus       129 ~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  129 EILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHhccCChhHHHHHHHHHHHhcc
Confidence            555558889999999999887654

It is also involved in sporulation [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.80  E-value=0.13  Score=52.37  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cCChHHHHHHHHHH
Q 004622          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD---LANSEKALECLQQV  577 (741)
Q Consensus       501 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a  577 (741)
                      .-+.+|++|++.+|++...+..+-.+..+..+.++...-+++++..+|+++..|...-.....   .-.+......|.++
T Consensus        49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~  128 (321)
T PF08424_consen   49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC  128 (321)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            344455555555555555555444444445555555555555555555555544433322221   12334444444444


Q ss_pred             HhhC------------------cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622          578 LYID------------------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       578 l~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      +..-                  .....++..+.......|..+.|+..++-.++.+
T Consensus       129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            4321                  0113456677778888899999999999888875

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.80  E-value=0.0078  Score=62.41  Aligned_cols=91  Identities=19%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             hcCCHHHHHHHHHHHHhcc--CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 004622           48 SLRNWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (741)
Q Consensus        48 ~~g~~~~Ai~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  125 (741)
                      -.|+-..|+.++..|+...  .......++|...++.|..-.|-..+..+|.++...+-.++.+|.+++.+.+.+.|+++
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            4689999999999999877  34445899999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHhcCCChH
Q 004622          126 WEKGYEHALHQSA  138 (741)
Q Consensus       126 ~~~al~l~p~~~~  138 (741)
                      |+.|++++|+++.
T Consensus       699 ~~~a~~~~~~~~~  711 (886)
T KOG4507|consen  699 FRQALKLTTKCPE  711 (886)
T ss_pred             HHHHHhcCCCChh
Confidence            9999999999998

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.79  E-value=0.21  Score=50.86  Aligned_cols=164  Identities=14%  Similarity=0.112  Sum_probs=84.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 004622          402 SIFDQILKEDPMYPEALIGRGTARAFQRE------------LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI  469 (741)
Q Consensus       402 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~  469 (741)
                      .-|++.++.+|.+..+|..+....-..-.            .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34667777777777777776655443321            334455566666666666665555555555555556666


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          470 QDLSKALEFEPNSADILHERGIVNFK---FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (741)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  546 (741)
                      +.+++++..+|++...|...-.....   .-.++.....|.+++..-.......          .........+      
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~----------~~~~~~~~~~------  149 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR----------MTSHPDLPEL------  149 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc----------cccccchhhH------
Confidence            66666666666655555444333222   2234555555555544211000000          0000000000      


Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (741)
Q Consensus       547 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  581 (741)
                      ......++..+.....+.|..+.|+..++-.++.+
T Consensus       150 e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  150 EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            00113355566667777788888888777777764

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.74  E-value=1.1  Score=47.87  Aligned_cols=122  Identities=10%  Similarity=-0.019  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Q 004622          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLH  596 (741)
Q Consensus       518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~  596 (741)
                      ..|..........|+++...-.|++++--.......|...+......|+.+-|...+..+.++ .|..+.+...-+.+-.
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            456666677778999999999999999888888999999999999999999998888888876 4566777888888888


Q ss_pred             HCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHH
Q 004622          597 GLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRL  641 (741)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~  641 (741)
                      ..|++..|...+++..+.-|.. ... -........+.|+.+.+.
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~-v~~-~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGL-VEV-VLRKINWERRKGNLEDAN  420 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCch-hhh-HHHHHhHHHHhcchhhhh
Confidence            8999999999999998877765 444 455566677788888877

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.70  E-value=0.013  Score=40.72  Aligned_cols=47  Identities=17%  Similarity=0.056  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622          104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      +.++.++..+.++|+|++|+...+.+|+++|+|.+ +......+...+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q-a~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ-AQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHH
Confidence            35788999999999999999999999999999999 666555554444

>PRK10941 hypothetical protein; Provisional

Probab=96.67  E-value=0.019  Score=55.93  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus        72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      ..|+-.+|++.++++.|+..++.++.++|+++.-+--+|.+|.++|.+..|...++.-++..|+++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            4677889999999999999999999999999988888999999999999999999999999999998

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.66  E-value=0.0033  Score=39.10  Aligned_cols=31  Identities=16%  Similarity=0.200  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622          105 AYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (741)
Q Consensus       105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  135 (741)
                      |++.+|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.64  E-value=0.078  Score=54.59  Aligned_cols=169  Identities=14%  Similarity=0.017  Sum_probs=96.3

Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HH
Q 004622          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GE  450 (741)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~  450 (741)
                      ....|..++.++.++.++..+|++..|.+++++++-.........+..-..-...|.-.   --|     ..+.|   ..
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r---L~~-----~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR---LDY-----RRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc---cCC-----ccccchHHHH
Confidence            34567777777777777777777777777777765321111000000000000000000   000     01112   23


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHH
Q 004622          451 AWKRRGQARAALGESVEAIQDLSKALEFEPN-SAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYTYL  523 (741)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l  523 (741)
                      +.+.....+.+.|-+..|+++.+-.+.++|. |+- +++.+-....+.++|+--+..++........     -+...+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            4556666777788888888888888888887 543 4444455556777777777777665542111     23455666


Q ss_pred             HHHHHHcCCH---------------HHHHHHHHHHHHhCccc
Q 004622          524 GLALSSIGEY---------------KKAEEAHLKAIQLDRNF  550 (741)
Q Consensus       524 a~~~~~~~~~---------------~~A~~~~~~al~~~~~~  550 (741)
                      +.+++..++-               +.|...+.+|+...|.-
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            7777777776               77888888888877764

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.43  E-value=0.18  Score=51.90  Aligned_cols=169  Identities=14%  Similarity=0.015  Sum_probs=100.6

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---H
Q 004622          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---D  484 (741)
Q Consensus       408 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~  484 (741)
                      +..+|-+.+++..++.++..+|+...|.+.+++++-.........+..-..-...|.-        +.--..+.|-   .
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~--------rL~~~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC--------RLDYRRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc--------ccCCccccchHHHH
Confidence            3557777777777777777777777777777776532211000000000000000000        0000012232   2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-c----cHHHHHHH
Q 004622          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-N----FLEAWGHL  557 (741)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~----~~~~~~~l  557 (741)
                      +++.....+.+.|-+..|.++.+-.+.++|. |+. +.+.+-....+.++++--+..++....... +    -|..-+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            4555667778889999999999999999998 663 444455555677888777777766554211 1    23456667


Q ss_pred             HHHHHHcCCh---------------HHHHHHHHHHHhhCccc
Q 004622          558 TQFYQDLANS---------------EKALECLQQVLYIDKRF  584 (741)
Q Consensus       558 a~~~~~~~~~---------------~~A~~~~~~al~~~p~~  584 (741)
                      +.++...++.               +.|...+.+|+...|.-
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            7777777777               78888888888887753

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.38  E-value=0.0074  Score=37.42  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (741)
Q Consensus        71 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  102 (741)
                      +++++|.++.+.|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999999975

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.35  E-value=0.15  Score=44.75  Aligned_cols=80  Identities=20%  Similarity=0.038  Sum_probs=38.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCC
Q 004622          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (741)
Q Consensus       521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  600 (741)
                      ..+..+-...++.+++...+.-..-+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..+|+
T Consensus        14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            33344444444444444444444444455444444445555555555555555555444444444444444444444444

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.32  E-value=0.0096  Score=56.76  Aligned_cols=66  Identities=20%  Similarity=0.016  Sum_probs=60.6

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus        73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      .+.|.-..+.|+.++|...|+.++.++|.+++++...|.....-++.-+|-++|-+||.++|.|+.
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            344455566799999999999999999999999999999999999999999999999999999998

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0052  Score=60.08  Aligned_cols=110  Identities=17%  Similarity=0.046  Sum_probs=93.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-----------CC---------hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIRDCDKALQLDP  100 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-----------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  100 (741)
                      -..++.|++++|+.|..-|.+++.--           +|         ...+.+.+.+-++.+.+..|+..+..++..+|
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~  306 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER  306 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence            34678899999999999999987511           11         01146788999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622          101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       101 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      +..++++++|..+..+.++++|+..++.+....|++.. +...+.......
T Consensus       307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~-i~~~~~~~~~~~  356 (372)
T KOG0546|consen  307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA-IEEELENVRQKK  356 (372)
T ss_pred             hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH-HHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999 766666555444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.30  E-value=0.0092  Score=37.96  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622          105 AYILKGCAFSALGRKEEALSVWEKGYEHA  133 (741)
Q Consensus       105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~  133 (741)
                      ++..+|.+|..+|++++|+..|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46677777888888888888887755443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.26  E-value=0.33  Score=51.95  Aligned_cols=188  Identities=14%  Similarity=0.071  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCChHH
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---------EAWKRRGQARAALGESVE  467 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---------~~~~~la~~~~~~~~~~~  467 (741)
                      .++|+++.    +.+|. +..|..++......-.++-|...|-++-.. |.-.         .--...|.+-..-|+|++
T Consensus       679 ledA~qfi----EdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fee  752 (1189)
T KOG2041|consen  679 LEDAIQFI----EDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE  752 (1189)
T ss_pred             hHHHHHHH----hcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence            44444443    34554 888888888888777777777777665321 1110         001223444444578888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (741)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  545 (741)
                      |.+.|-.+-+.+        .-..++.+.|+|-....+++..-.-+.  .-..++.++|..+..+..|++|.++|.+.-.
T Consensus       753 aek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  753 AEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             hhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            887775442221        111234455665555544443211111  1135667777777777777777777765422


Q ss_pred             hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (741)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (741)
                              .-++..++....+|++-.    .....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus       825 --------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  825 --------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             --------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence                    123344444444444322    22233355555555556666655655555555433

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.22  E-value=2.9  Score=47.02  Aligned_cols=90  Identities=14%  Similarity=-0.054  Sum_probs=53.6

Q ss_pred             hcCCHHHHHHHHHHHHhccCChhh-------HHHHHHHHHhhhcHHHHHHHHHHHHHhCCC----ChhHHHHH--HHHHH
Q 004622           48 SLRNWSKAIRILDSLLAQSYEIQD-------ICNRAFCYSQLELHKHVIRDCDKALQLDPT----LLQAYILK--GCAFS  114 (741)
Q Consensus        48 ~~g~~~~Ai~~~~~al~~~~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~~--g~~~~  114 (741)
                      +..|++.|..++++++.+......       .+-++.++.+.+... |+..++++++.--+    .+.-.+++  ...+.
T Consensus        72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~  150 (608)
T PF10345_consen   72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL  150 (608)
T ss_pred             HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            777888888888888776522221       234566666666666 88888877776544    12222222  22333


Q ss_pred             HcCCHHHHHHHHHHHHHhc--CCChH
Q 004622          115 ALGRKEEALSVWEKGYEHA--LHQSA  138 (741)
Q Consensus       115 ~~g~~~~A~~~~~~al~l~--p~~~~  138 (741)
                      ..+++..|+..++....+.  ++++.
T Consensus       151 ~~~d~~~Al~~L~~~~~~a~~~~d~~  176 (608)
T PF10345_consen  151 QHKDYNAALENLQSIAQLANQRGDPA  176 (608)
T ss_pred             hcccHHHHHHHHHHHHHHhhhcCCHH
Confidence            3367777888877777665  34444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.19  E-value=1.1  Score=45.64  Aligned_cols=214  Identities=11%  Similarity=-0.011  Sum_probs=142.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---
Q 004622          402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF---  478 (741)
Q Consensus       402 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---  478 (741)
                      -.+++++..-|-.++.|+.........++-+.|+...++++...|.   ....++.+|...++.+....+|+++++.   
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r  365 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR  365 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence            3567778888888899998888888899999999888888776665   5667777777777766666666665432   


Q ss_pred             ---------------CCC-CHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc
Q 004622          479 ---------------EPN-SADI-----------LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG-LALSSI  530 (741)
Q Consensus       479 ---------------~p~-~~~~-----------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~  530 (741)
                                     +|. .++.           +..+-..-.+..-.+.|...|-++-+..-....++..-| .-+...
T Consensus       366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~  445 (660)
T COG5107         366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT  445 (660)
T ss_pred             HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence                           010 0111           111122222334456677777776554322223332222 234567


Q ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHCCChHHHHHHH
Q 004622          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       531 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~  608 (741)
                      |++..|-.+|+-.+...|+++......-..+...++-..|...|++++..-.+.  ..+|-.+-..-..-|+...+...=
T Consensus       446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe  525 (660)
T COG5107         446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE  525 (660)
T ss_pred             CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence            888888888888888888887766666677778888888888888777543332  455666666666778888888777


Q ss_pred             HHhhhhcCCc
Q 004622          609 SSGSRTMMPH  618 (741)
Q Consensus       609 ~~al~~~~~~  618 (741)
                      ++..+..|..
T Consensus       526 ~rf~e~~pQe  535 (660)
T COG5107         526 ERFRELVPQE  535 (660)
T ss_pred             HHHHHHcCcH
Confidence            7777777765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.18  E-value=0.0069  Score=55.34  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622           77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      ....+.++.+.|.+.+.+++.+-|.+...|+++|....+.|+++.|.+.|++.|+++|++..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34567789999999999999999999999999999999999999999999999999998866

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.18  E-value=0.02  Score=62.20  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=102.8

Q ss_pred             hhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----ChhhHHHHHHHHHhh--hcHHHHHHHHHHHHHhC
Q 004622           27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-----EIQDICNRAFCYSQL--ELHKHVIRDCDKALQLD   99 (741)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~-----~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~   99 (741)
                      ..+.-+..-+...+.|.+.+|.+++|..|.--|..++.+-|     ....+.+.+.||+.+  |+|.+++.+|.-++...
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~  123 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ  123 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence            44455566667788999999999999999888888887552     222367888888765  89999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       100 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      |....+.+.++.+|..+++++-|.+...-....+|.+.. +...........
T Consensus       124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~-~~eif~elk~ll  174 (748)
T KOG4151|consen  124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS-ASEIFEELKGLL  174 (748)
T ss_pred             chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999977 555555555444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.42  Score=50.54  Aligned_cols=125  Identities=19%  Similarity=0.128  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 004622          468 AIQDLSKALEFEPNSADILHE--RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK-AI  544 (741)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-al  544 (741)
                      ++..+...+.++|.++..+..  ++..+...+....+.-....++..+|++..+..+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            455555555555555554322  244555555555666666666666666666666666555555444444433333 55


Q ss_pred             HhCcccHHHHHHH------HHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHH
Q 004622          545 QLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (741)
Q Consensus       545 ~~~~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  592 (741)
                      ...|.+......+      +.....+|+..++...++++....|.++.+...+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~  183 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM  183 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence            5555555443333      55555555556666666666666665544443333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.94  E-value=0.15  Score=44.73  Aligned_cols=84  Identities=17%  Similarity=0.113  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  461 (741)
                      ..++.....-...++.+++...+..+--..|..++.-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34445555556666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCh
Q 004622          462 LGES  465 (741)
Q Consensus       462 ~~~~  465 (741)
                      .|+.
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            6553

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.89  E-value=2.9  Score=48.56  Aligned_cols=93  Identities=8%  Similarity=0.053  Sum_probs=74.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHh-cc---CChhhHHHHHHHHHhh-------hcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622           45 KLCSLRNWSKAIRILDSLLA-QS---YEIQDICNRAFCYSQL-------ELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (741)
Q Consensus        45 ~~~~~g~~~~Ai~~~~~al~-~~---~~~~~~~~~a~~~~~~-------g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  113 (741)
                      .++..+.|++|+..|++.-. .+   ....+.+..|.+.+..       ..+++|+..|++ |.-.|.-|--|...|.+|
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  562 (932)
T PRK13184        484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVY  562 (932)
T ss_pred             HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHH
Confidence            35678899999999999766 22   2344456677666554       368888888876 445688888999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCChH
Q 004622          114 SALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       114 ~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      ..+|+++|=+++|.-|++.-|++|.
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        563 QRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            9999999999999999999999988

>smart00028 TPR Tetratricopeptide repeats

Probab=95.85  E-value=0.015  Score=35.53  Aligned_cols=31  Identities=35%  Similarity=0.411  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622          105 AYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (741)
Q Consensus       105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  135 (741)
                      +++.+|.++..+|++++|...|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3445555555555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.82  E-value=2.7  Score=43.30  Aligned_cols=49  Identities=8%  Similarity=0.020  Sum_probs=41.8

Q ss_pred             hHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHH
Q 004622          313 SDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (741)
Q Consensus       313 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~  361 (741)
                      ......|+.-.|-+....++...|.++......+.+....|.|+.+...
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~  345 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQD  345 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHH
Confidence            3455678888899999999999999999888889999999999988774

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.80  E-value=0.14  Score=41.60  Aligned_cols=103  Identities=16%  Similarity=0.105  Sum_probs=63.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          387 RGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      +|..++..|++-+|+++.+..+..++++.   ..+...|.++..+.            ......+....+.+        
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl--------   61 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL--------   61 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH--------
Confidence            46678889999999999999998887765   34445555554332            12211122222222        


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                         .+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus        62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               3456666666677766666777766666666666666666666653

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.70  E-value=0.052  Score=54.34  Aligned_cols=89  Identities=12%  Similarity=0.192  Sum_probs=75.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCChhh-------------------HHHHHHHHHhhhcHHHHHHHHHHHHHhCCC
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD-------------------ICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~-------------------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  101 (741)
                      .++...|.+|+|..|+.-|.-||++.....+                   -..+..||+++++.+-|+.-.-+.+.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            5677789999999999999999884311111                   146788999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622          102 LLQAYILKGCAFSALGRKEEALSVWEKG  129 (741)
Q Consensus       102 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a  129 (741)
                      ++-.|++.+.++..+.+|.+|-..+--+
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998865544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.67  E-value=0.022  Score=36.14  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHhh
Q 004622          588 YHLRGLLLHGLGQHKKAIKDLSSGS  612 (741)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al  612 (741)
                      +..+|.+|...|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455666666666666666666643

>smart00028 TPR Tetratricopeptide repeats

Probab=95.62  E-value=0.023  Score=34.62  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=29.4

Q ss_pred             hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (741)
Q Consensus        70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  102 (741)
                      ..+.++|.++..+|++++|+..++++++.+|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            457889999999999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.59  E-value=0.14  Score=41.55  Aligned_cols=44  Identities=16%  Similarity=0.125  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (741)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  579 (741)
                      +++++.++..+.|..+..++.+|.-+.....|++++...++++.
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            44555555555555555555555544444445555555555443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.55  E-value=0.89  Score=48.44  Aligned_cols=85  Identities=8%  Similarity=-0.112  Sum_probs=47.3

Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcccchhhHHHHh
Q 004622          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILI  663 (741)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~  663 (741)
                      ..+.+..++..+..+..+.-|-+.|++.-     +     ...+...+...+++.+|...-...-+-.+.+++..++.+.
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~g-----D-----~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA  815 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMG-----D-----LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA  815 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhc-----c-----HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence            34445555555555555555555555431     1     2234455566666666665555544445556666666666


Q ss_pred             cCCCchhHhhhHHHH
Q 004622          664 PSSRNIGAKDCIPRM  678 (741)
Q Consensus       664 ~~g~~~~A~~~~~~~  678 (741)
                      ...++++|-..|.++
T Consensus       816 E~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  816 ENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hhhhHHHHHHHHHHh
Confidence            666666666655444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.54  E-value=6.6  Score=45.73  Aligned_cols=351  Identities=11%  Similarity=-0.087  Sum_probs=173.1

Q ss_pred             HHhhhhHHHhcCChhhHHHHHHHhhccCCCCch---hHHHHHHHHHchh-------cHHHHHHHHHHhHHHHHHHhhccC
Q 004622          308 HDKLSSDSASLNDSNTNSESYSKSSISDNKSSD---STESRSKLSFKWD-------MLKETSNEAKRNKKFCVTRISKSK  377 (741)
Q Consensus       308 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~  377 (741)
                      +......+...+.|+.|+..|++.-...|...+   +....|....++-       .+.+|+.+        ++. .-..
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~  548 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSE--------FSY-LHGG  548 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHH--------HHH-hcCC
Confidence            344567888899999999999999999988655   4444444443322       23333332        222 2345


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCCCcHHHH
Q 004622          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQSNPSAGEAW  452 (741)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~  452 (741)
                      +..+--++..|.+|...|++++-+++|.-+++..|.+|..-...-.+-+++.     +-..|....--++...|.....-
T Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (932)
T PRK13184        549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR  628 (932)
T ss_pred             CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence            5666778889999999999999999999999999988754433333222221     12233344444444444322110


Q ss_pred             --------------------------------HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 004622          453 --------------------------------KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (741)
Q Consensus       453 --------------------------------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (741)
                                                      +.+-. -+-.|..---.+.++++....|  ..++...-.+...+|.++
T Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  705 (932)
T PRK13184        629 EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFL-SFWSGFTPFLPELFQRAWDLRD--YRALADIFYVACDLGNWE  705 (932)
T ss_pred             HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHH-HHHhcCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhccHH
Confidence                                            00000 1112333333344445444433  244444555566777777


Q ss_pred             HHHHHHHHHHHh-----CCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHcCC
Q 004622          501 AAVEDLSACVKL-----DKENKS--------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE-AWGHLTQFYQDLAN  566 (741)
Q Consensus       501 ~A~~~~~~al~~-----~p~~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~  566 (741)
                      -+.......-..     .|.+..        .+..-..+......++++...+.   ..+|.... +....+.-....++
T Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  782 (932)
T PRK13184        706 FFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPTLILYAFDLFAIQALLDEE  782 (932)
T ss_pred             HHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHHHHHHHHHHHHHHHHHhcc
Confidence            655544433221     111110        11111222233345555554322   22333221 11111221222222


Q ss_pred             hHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHCCChHHHHHHHHHhhh-hcCCchHHHHHHHHHHHHHhCCCHHHHHH
Q 004622          567 SEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGSR-TMMPHLIWNLTRWRNLCFNAWPFIRRRLL  642 (741)
Q Consensus       567 ~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~  642 (741)
                      .+.-....+..-...+   ...........+|....++++|-+.+...-. .-..+..+. ....|..+.-.++-+-|..
T Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  861 (932)
T PRK13184        783 GESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEA-FVLYGCYLALTEDREAAKA  861 (932)
T ss_pred             chHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchH-HHHHHHHHHhcCchhHHHH
Confidence            2222222222211111   1233344556677778888888887754421 111221233 5555666666777776666


Q ss_pred             HHHhhccCCcccchhhHHHHhcCCCchhHhhh
Q 004622          643 CTRLLKSTVSFAGLTLMEILIPSSRNIGAKDC  674 (741)
Q Consensus       643 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  674 (741)
                      .+....+..+......+..+.-.|...+....
T Consensus       862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  893 (932)
T PRK13184        862 HFSGCREDALFPRSLDGDIFDYLGKISDNLSW  893 (932)
T ss_pred             HHhhccccccCcchhhccccchhccccccccH
Confidence            55555544443333344444455555554443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.53  E-value=4.5  Score=43.82  Aligned_cols=79  Identities=9%  Similarity=-0.037  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  461 (741)
                      +++..+|..+.....+++|.++|.+.-.        .-.+..|+++...|++-.    .+...-|++...+-.+|..+..
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~s  864 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTS  864 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHh
Confidence            3444555555555555555555543211        122333444444443322    2222234444444555555555


Q ss_pred             cCChHHHHHHH
Q 004622          462 LGESVEAIQDL  472 (741)
Q Consensus       462 ~~~~~~A~~~~  472 (741)
                      .|--++|.+.|
T Consensus       865 vGMC~qAV~a~  875 (1189)
T KOG2041|consen  865 VGMCDQAVEAY  875 (1189)
T ss_pred             hchHHHHHHHH
Confidence            55555555544

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.51  E-value=1.6  Score=41.42  Aligned_cols=50  Identities=14%  Similarity=0.133  Sum_probs=35.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 004622          394 EGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQ  443 (741)
Q Consensus       394 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~  443 (741)
                      ..+.++|+..|+++++..+...    .++-.+..++++++++++-.+.|.+.+.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            4477888888888888776642    4556666777777887777777777653

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.91  Score=47.68  Aligned_cols=66  Identities=20%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhC---cc----cHHHHHHHHHHHHHCCC-hHHHHHHHHHhhhhcCCc
Q 004622          553 AWGHLTQFYQDLANSEKALECLQQVLYID---KR----FSKAYHLRGLLLHGLGQ-HKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~  618 (741)
                      -+..+|.++..+|+...|..+|..+++..   ..    .|.+++.+|.++..+|. ..++..++.+|-+...+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            45667888899999999998888887431   11    26788899999999888 889999999987776444

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.40  E-value=0.12  Score=40.91  Aligned_cols=48  Identities=27%  Similarity=0.163  Sum_probs=24.9

Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622           89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (741)
Q Consensus        89 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  136 (741)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|+.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344555555555555555555555555555555555555555555443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.37  E-value=4.2  Score=42.44  Aligned_cols=94  Identities=11%  Similarity=-0.006  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc
Q 004622           56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEHA  133 (741)
Q Consensus        56 i~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~  133 (741)
                      +..|..|...- .+...|.+-....-+.+.+.+--..|..++..+|++++.|+.-+.-.+.-|. .+.|...|.++|..+
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            46788887644 6889998888888888889999999999999999999999999998888887 999999999999999


Q ss_pred             CCChHHHHHHHHHHHHH
Q 004622          134 LHQSADLKQFLELEELL  150 (741)
Q Consensus       134 p~~~~~~~~~l~~~~~~  150 (741)
                      |+++. ++...-.....
T Consensus       171 pdsp~-Lw~eyfrmEL~  186 (568)
T KOG2396|consen  171 PDSPK-LWKEYFRMELM  186 (568)
T ss_pred             CCChH-HHHHHHHHHHH
Confidence            99999 55544443333

>PRK10941 hypothetical protein; Provisional

Probab=95.35  E-value=0.21  Score=48.81  Aligned_cols=73  Identities=12%  Similarity=-0.033  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 004622          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL  557 (741)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  557 (741)
                      .+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-...
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            3445556677777777777777777777777777777777777777777777777777777777766654433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.24  E-value=0.071  Score=51.08  Aligned_cols=74  Identities=26%  Similarity=0.416  Sum_probs=62.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  458 (741)
                      +..|.-....|+.++|..+|+.++..+|.+++++...|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34555667789999999999999999999999999999998888889999999999999999988887766543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.20  E-value=0.25  Score=39.17  Aligned_cols=42  Identities=26%  Similarity=0.355  Sum_probs=16.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (741)
Q Consensus       506 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  547 (741)
                      +++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+
T Consensus        11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d   52 (90)
T PF14561_consen   11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD   52 (90)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            333333444444444444444444444444444444444333

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.20  E-value=1.8  Score=41.13  Aligned_cols=192  Identities=13%  Similarity=0.093  Sum_probs=119.1

Q ss_pred             cCChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc-HHHHHHHHHHHH
Q 004622          318 LNDSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS-VDFRLSRGIAQV  392 (741)
Q Consensus       318 ~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~  392 (741)
                      ..+.++|+..|++++++.|...+    ++.....++++++++++.+........+....+....+.. ....+...   .
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyi---S  116 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYI---S  116 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH---h
Confidence            34778899999999999876544    6777889999999999999987777665555444332221 11111111   1


Q ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHcccHHHHHHHHHHHHHhCCC------------cHHHHHH
Q 004622          393 NEGKYASAISIFDQILKE--DPMYPEAL----IGRGTARAFQRELEAAISDFTEAIQSNPS------------AGEAWKR  454 (741)
Q Consensus       393 ~~g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~  454 (741)
                      ...+.+--..+|+..+..  +..+...|    ..+|.+|+..++|.+-.+.+.+.-.....            ..+++..
T Consensus       117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl  196 (440)
T KOG1464|consen  117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL  196 (440)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence            223333334444443331  22333333    46888899888888877777665443211            1234555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          455 RGQARAALGESVEAIQDLSKALEFEPN--SADILH----ERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~----~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                      -...|..+.+-.+-...|++++.+...  +|.+.-    .=|..+.+.|+|++|-..|-++++.
T Consensus       197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence            566777777777777788888776432  222221    2245677788888888888887775

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=3.7  Score=40.56  Aligned_cols=273  Identities=12%  Similarity=-0.005  Sum_probs=165.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCCCc--H
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAI---QSNPSA--G  449 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~l---~~~~~~--~  449 (741)
                      +..+.......++++++..|..++..  .|.+        ..+...+|..+.+.|+.++-........   ..-+..  .
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            45566667778889999999998874  2221        3567789999999998887655554432   222211  1


Q ss_pred             HHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--C
Q 004622          450 EAWKRRGQAR-AALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKL----DKE--N  516 (741)
Q Consensus       450 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~--~  516 (741)
                      .....+-... ...+....-+..+..+++.......      .-..+..+|...++|.+|+......+.-    +..  -
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence            1122222222 2233455556666666654432222      2345678899999999999887776652    222  2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cccHH--HHHHHHHHHHHcCChHHHHHHHHHHHhhCc---ccHH
Q 004622          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLE--AWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSK  586 (741)
Q Consensus       517 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~  586 (741)
                      ..++..-..+|+...+..+|...+..+-...     |....  .-..-|.++....+|.-|..+|-++++-..   ++..
T Consensus       168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~  247 (411)
T KOG1463|consen  168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK  247 (411)
T ss_pred             eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence            3556666788888889999988887765432     33222  223346667777899999999999987532   1223


Q ss_pred             H---HHHHHHHHHHCCChHHHHHHH--HHhhhhcCCchHHHHHHHHHHHHH--hCCCHHHHHHHHHhhccCCcccchhhH
Q 004622          587 A---YHLRGLLLHGLGQHKKAIKDL--SSGSRTMMPHLIWNLTRWRNLCFN--AWPFIRRRLLCTRLLKSTVSFAGLTLM  659 (741)
Q Consensus       587 ~---~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~l~  659 (741)
                      +   +-.+-.+-...+..++--..+  +.+++....+ ..+ ....+.++.  .+.+|+.|+.-|+.-...+|.+...+.
T Consensus       248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~-i~A-mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~  325 (411)
T KOG1463|consen  248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRD-IDA-MKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQ  325 (411)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcc-hHH-HHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHH
Confidence            3   333444444556666544433  4455554444 566 777777774  467899999777776666664443333

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.63  Score=49.53  Aligned_cols=93  Identities=20%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CCh------hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  113 (741)
                      ..+.+.|+-.+|..+++.|...+.-- .+.      ....+++.||+.+.+.+.|.+.++.|-+.||.++-..+..-++.
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~  438 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF  438 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            35677899999999999999998732 211      11457788999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhc
Q 004622          114 SALGRKEEALSVWEKGYEHA  133 (741)
Q Consensus       114 ~~~g~~~~A~~~~~~al~l~  133 (741)
                      ...|+-++|+.+..+.....
T Consensus       439 ~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  439 LAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHhcchHHHHHHHHHHHhhh
Confidence            99999999999988866544

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=6  Score=41.88  Aligned_cols=81  Identities=12%  Similarity=0.088  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLS  507 (741)
Q Consensus       432 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~  507 (741)
                      +...+.+.......|+++......+..+...|+.+.|+..++..+.  +.-    .-.++.+|.++.-+.+|..|-..+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3344444444555666666666666666666666666666665555  111    2235556666666666777766666


Q ss_pred             HHHHhCC
Q 004622          508 ACVKLDK  514 (741)
Q Consensus       508 ~al~~~p  514 (741)
                      ...+.+.
T Consensus       328 ~L~desd  334 (546)
T KOG3783|consen  328 LLRDESD  334 (546)
T ss_pred             HHHhhhh
Confidence            6655443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=3.8  Score=39.39  Aligned_cols=265  Identities=12%  Similarity=0.012  Sum_probs=151.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcccHHHHHHHHHH---HHHhC--CCcHHH
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE---AIQSN--PSAGEA  451 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~---~l~~~--~~~~~~  451 (741)
                      +.+|+.....+++++|+..|.+++.....        ...+...++.+|...|++..--+....   +....  |....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            46777888899999999999999875211        235678899999999987654444333   22221  111222


Q ss_pred             HHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 004622          452 WKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKS  518 (741)
Q Consensus       452 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~  518 (741)
                      ...+..-+ .....++.-+..+...++......      ..-..+..++++.|.|.+|+......+..      .|.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            22221111 123345556666666655432222      22334667888999999999887766542      233346


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCc---ccHHH-
Q 004622          519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA-  587 (741)
Q Consensus       519 ~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~-  587 (741)
                      ++..-..+|....+..++...+..+...     +|....+-  ..-|..++.-.+|.-|..+|-++++-..   .+..+ 
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc  246 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC  246 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence            6666778888888888887777666443     34433222  2335566777889999999988886533   22333 


Q ss_pred             ----HHHHHHHHHHCCChHHHHHHHH--HhhhhcCCchHHHHHHHHHHHH--HhCCCHHHHHHHHHhhccCCc
Q 004622          588 ----YHLRGLLLHGLGQHKKAIKDLS--SGSRTMMPHLIWNLTRWRNLCF--NAWPFIRRRLLCTRLLKSTVS  652 (741)
Q Consensus       588 ----~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~~~~~~~  652 (741)
                          |..+..+.  .+..++-...+.  ..++...+..+++ ....+..+  ..+.+|..|+..|.--...++
T Consensus       247 ~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~a-m~avaea~~NRsL~df~~aL~qY~~el~~D~  316 (421)
T COG5159         247 VSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRA-MLAVAEAFGNRSLKDFSDALAQYSDELHQDS  316 (421)
T ss_pred             HHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHH-HHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence                22233332  233333322222  2233222222444 55666666  345678888855554433444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=1.4  Score=46.69  Aligned_cols=133  Identities=20%  Similarity=0.069  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 004622          400 AISIFDQILKEDPMYPEALIG--RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK-AL  476 (741)
Q Consensus       400 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al  476 (741)
                      ++..+...+..+|.++..+..  +...+...+....+.-.+...+..+|.+..+..+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            666666666677877766433  466666778888888888888888999888888888888777766666555554 77


Q ss_pred             hhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622          477 EFEPNSADILHER------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (741)
Q Consensus       477 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  532 (741)
                      ...|.+......+      +.....+|+..++.....++....|.++.....+........+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs  191 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS  191 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence            7788887665555      7777788888888888888888888887665555444333333

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.61  E-value=0.21  Score=51.02  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004622          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (741)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  540 (741)
                      ..|+.-.|-+-+..++...|.++......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|....
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence            34555555555556666666666655556666666666666665555544443333344444445555566666666555


Q ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc
Q 004622          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (741)
Q Consensus       541 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  582 (741)
                      +-.+...-+++++...-+......|-++++..++++.+.++|
T Consensus       381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~  422 (831)
T PRK15180        381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP  422 (831)
T ss_pred             HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence            555554444444444444444555555666666666665554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.50  E-value=1.2  Score=38.48  Aligned_cols=85  Identities=16%  Similarity=0.133  Sum_probs=40.7

Q ss_pred             HcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHH
Q 004622          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLL  642 (741)
Q Consensus       563 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  642 (741)
                      ..++.+++...+...--+.|+.+..-..-|+++...|++.+|+..|+...+-.+.. +.. --.++.|+..+||..--..
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~-kAL~A~CL~al~Dp~Wr~~   99 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYG-KALLALCLNAKGDAEWHVH   99 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHH-HHHHHHHHHhcCChHHHHH
Confidence            34555555555554444555555555555555555555555555555554443332 222 3344555555555544443


Q ss_pred             HHHhhcc
Q 004622          643 CTRLLKS  649 (741)
Q Consensus       643 ~~~~~~~  649 (741)
                      ....+..
T Consensus       100 A~~~le~  106 (153)
T TIGR02561       100 ADEVLAR  106 (153)
T ss_pred             HHHHHHh
Confidence            3333333

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.47  E-value=11  Score=42.93  Aligned_cols=240  Identities=16%  Similarity=0.106  Sum_probs=125.5

Q ss_pred             CchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHH
Q 004622          303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD  382 (741)
Q Consensus       303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  382 (741)
                      .++.++..+|......+...+|++.|-++     +|+..+.....+..+.|.|++-+..+..+.+       +......+
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-------k~~E~~id 1169 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-------KVREPYID 1169 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-------hhcCccch
Confidence            34567888888888899999999988664     5777788888888888888888774222221       11111111


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  462 (741)
                      .  .+..+|...++..+-.++.     ..|+.+ -.-..|.-++..+.|+.|.-+|...        .-|..++..+...
T Consensus      1170 ~--eLi~AyAkt~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 S--ELIFAYAKTNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYL 1233 (1666)
T ss_pred             H--HHHHHHHHhchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHH
Confidence            1  2223344445544433322     234432 2334555555666666655555432        2344555666666


Q ss_pred             CChHHHHHHHHHHHhhC---------------------C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622          463 GESVEAIQDLSKALEFE---------------------P----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (741)
Q Consensus       463 ~~~~~A~~~~~~al~~~---------------------p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  517 (741)
                      |+|+.|...-+++-...                     .    -+++-+-.+...|...|-|++-+..++.++-+...+.
T Consensus      1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred             HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence            66666666555542110                     0    0123334445555566666666666666665555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Q 004622          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKAL  571 (741)
Q Consensus       518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~  571 (741)
                      ..+..+|.+|.+- ++++-.++++-....        .-+....|..+..+|.+-..|+.|.
T Consensus      1314 gmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            5555555555432 233333333322111        0112334555555555555555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.43  E-value=0.62  Score=40.19  Aligned_cols=82  Identities=12%  Similarity=0.012  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  463 (741)
                      ++.........++.+++...+..+--..|+.++.-..-|.++...|++.+|+..++...+..+..+.+.-.++.|+...|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444444456777777777776666777777777777777777777777777777776666666666666666666666


Q ss_pred             Ch
Q 004622          464 ES  465 (741)
Q Consensus       464 ~~  465 (741)
                      +.
T Consensus        93 Dp   94 (153)
T TIGR02561        93 DA   94 (153)
T ss_pred             Ch
Confidence            53

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.35  E-value=5.2  Score=38.51  Aligned_cols=201  Identities=8%  Similarity=-0.013  Sum_probs=105.1

Q ss_pred             HhhhhHHHhcCChhhHHHHHHHhhccCCC--------CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622          309 DKLSSDSASLNDSNTNSESYSKSSISDNK--------SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS  380 (741)
Q Consensus       309 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  380 (741)
                      .++++...+.+++++|+..|.+.+.....        .......++.+|...|++..-.+......... .  .-..|..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~--~ftk~k~   83 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-E--DFTKPKI   83 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-H--HhcchhH
Confidence            35678888999999999999999976211        23367788899999988776555311111100 0  0011111


Q ss_pred             HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCC
Q 004622          381 VDFRLSRGIA-QVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQS------NPS  447 (741)
Q Consensus       381 ~~~~~~~a~~-~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~  447 (741)
                      ..+...+-.. -.....++.-+..+...++-....      ...-..+...+++.|+|.+|+......+..      .|.
T Consensus        84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~  163 (421)
T COG5159          84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN  163 (421)
T ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence            1111111111 112233444444444444322111      112234566677777777777766555432      233


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          448 AGEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNSADI--LHERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                      -..++..-..+|....+..++...+..+-..     .|....+  -..-|.....-.+|..|..+|-++++-
T Consensus       164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            3445555566666666666655555444322     2222111  222244555666777777777777664

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.18  E-value=0.23  Score=41.69  Aligned_cols=85  Identities=13%  Similarity=0.006  Sum_probs=62.6

Q ss_pred             cCChhhHHHHHHHHHhhh---cHHHHHHHHHHHHH-hCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHH
Q 004622           66 SYEIQDICNRAFCYSQLE---LHKHVIRDCDKALQ-LDPTL-LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL  140 (741)
Q Consensus        66 ~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  140 (741)
                      +......+++|.+..+..   +-.+.+..++..++ -.|.. -+..|.++..+.++|+|+.++......|+.+|+|.+ +
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q-a  107 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ-A  107 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH-H
Confidence            455666788888888774   45577788888886 44433 347778888888889999999999999999998888 6


Q ss_pred             HHHHHHHHHHH
Q 004622          141 KQFLELEELLT  151 (741)
Q Consensus       141 ~~~l~~~~~~~  151 (741)
                      ..+-......+
T Consensus       108 ~~Lk~~ied~i  118 (149)
T KOG3364|consen  108 LELKETIEDKI  118 (149)
T ss_pred             HHHHHHHHHHH
Confidence            66555555554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.16  E-value=3.9  Score=36.31  Aligned_cols=119  Identities=14%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             HcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHH
Q 004622          427 FQRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFN  500 (741)
Q Consensus       427 ~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~  500 (741)
                      +.+..++|+..|..+-+..-..  .-+.+..+.+..+.|+...|+..|..+-...|-.    ..+...-+.++...|.|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3445555555555544332221  2234555556666666666666666554443211    112334445555666666


Q ss_pred             HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622          501 AAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (741)
Q Consensus       501 ~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  545 (741)
                      +-....+..-. .+|-...+...||..-++.|++.+|..+|.+...
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            55444433211 2333344555566666666666666666666554

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.12  E-value=0.95  Score=38.17  Aligned_cols=66  Identities=23%  Similarity=0.174  Sum_probs=54.0

Q ss_pred             hcCCHHHHHHHHHHHHh-cc--CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622           48 SLRNWSKAIRILDSLLA-QS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (741)
Q Consensus        48 ~~g~~~~Ai~~~~~al~-~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  113 (741)
                      ...|.++-|.+++..++ -.  ..-.+.+.+|..+.++|+|++++..++..++.+|+|.+|.-..-.+.
T Consensus        47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie  115 (149)
T KOG3364|consen   47 DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE  115 (149)
T ss_pred             chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            45577888999999997 22  33445789999999999999999999999999999998876654443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.11  E-value=2.8  Score=34.49  Aligned_cols=92  Identities=21%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hCC
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------SNP  446 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-------~~~  446 (741)
                      ..|.-.+..|-|++|...++++.+....            +..++..|+..+..+|+|++++....+++.       ++.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            3345556678888888888888875432            134566777777888888777666555553       333


Q ss_pred             CcHH----HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622          447 SAGE----AWKRRGQARAALGESVEAIQDLSKALE  477 (741)
Q Consensus       447 ~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~  477 (741)
                      +...    +.+..+..+...|+.++|+..|+.+-+
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            3322    234455555556666666666655543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.08  E-value=1.1  Score=42.46  Aligned_cols=66  Identities=12%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622          379 ISVDFRLSRGIAQVNEGKYASAIS-------IFDQILKEDPM------YPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (741)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~-------~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  444 (741)
                      ..+..++.+|+.|...|+-+....       .|.+++.....      .....+.+|.+..+.|++++|..+|.+++..
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            335667788888888888544444       44444433221      1356667777777777777777777777764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.91  E-value=0.29  Score=50.75  Aligned_cols=86  Identities=15%  Similarity=-0.009  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHH
Q 004622          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (741)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (741)
                      ...|+..|.+++...|.....+.+.+.++.+.   |+.-.|+.-...++.++|....+++.|+.++..++++.+|++...
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~  469 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW  469 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence            34455555555555555555555555544443   333444555555555555555555555555555555555555555


Q ss_pred             HhhhhcCCc
Q 004622          610 SGSRTMMPH  618 (741)
Q Consensus       610 ~al~~~~~~  618 (741)
                      .+....|.+
T Consensus       470 alq~~~Ptd  478 (758)
T KOG1310|consen  470 ALQMSFPTD  478 (758)
T ss_pred             HHhhcCchh
Confidence            444444433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.79  E-value=0.98  Score=41.30  Aligned_cols=98  Identities=12%  Similarity=0.032  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--cc----HHHH
Q 004622          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RF----SKAY  588 (741)
Q Consensus       518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~  588 (741)
                      .++..+|..|.+.|+.++|++.|.++.+.....   .+.+..+..+....+++.....++.++-..-.  .+    ....
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            445556666666666666666666655543221   34555556666666666666666666554321  11    1123


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622          589 HLRGLLLHGLGQHKKAIKDLSSGSRTM  615 (741)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~  615 (741)
                      ...|..+...++|..|.+.|-.+....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            344555666677777777776665443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.60  E-value=6.7  Score=42.19  Aligned_cols=176  Identities=13%  Similarity=0.046  Sum_probs=95.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Q 004622          386 SRGIAQVNEGKYASAISIFDQI------LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQ  457 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~  457 (741)
                      .+|..+.-.|++.+|.++|.+.      ++...+  .-.+..+.-++..|..++-....++-.+  .+-+.|.   .-|.
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAE  711 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAE  711 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHH
Confidence            4677777788888888888653      222111  1234455555666665554444443221  1122222   2355


Q ss_pred             HHHHcCChHHHHHHH----------HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004622          458 ARAALGESVEAIQDL----------SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (741)
Q Consensus       458 ~~~~~~~~~~A~~~~----------~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  527 (741)
                      .+...|+.++|+...          +-+-+++..+.+.+..++..+.....+.-|-+.|.+.-..        ..+...+
T Consensus       712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlH  783 (1081)
T KOG1538|consen  712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLH  783 (1081)
T ss_pred             HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhhe
Confidence            666777777776533          2222334444555666666666666666666666654221        1234455


Q ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (741)
Q Consensus       528 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  577 (741)
                      ...++|++|....++--+.-|   .+++-.|+.+....++++|.+.|.++
T Consensus       784 ve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  784 VETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             eecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh
Confidence            667777777766655433332   35555666666666666666555544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.55  E-value=1.4  Score=40.34  Aligned_cols=94  Identities=20%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHH
Q 004622          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENK----SAYT  521 (741)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~  521 (741)
                      ++..+|..|...|+.+.|++.|.++.......   .+.+..+..+.+..+++.....++.++-....  .+.    ....
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            44555555555555555555555554433211   23444455555555555555555555544311  111    1122


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 004622          522 YLGLALSSIGEYKKAEEAHLKAI  544 (741)
Q Consensus       522 ~la~~~~~~~~~~~A~~~~~~al  544 (741)
                      .-|..+...++|.+|...|-.+.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccC
Confidence            23444555556666555555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.54  E-value=1  Score=42.54  Aligned_cols=67  Identities=24%  Similarity=0.191  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhC--c----ccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622          551 LEAWGHLTQFYQDLANSE-------KALECLQQVLYID--K----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP  617 (741)
Q Consensus       551 ~~~~~~la~~~~~~~~~~-------~A~~~~~~al~~~--p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  617 (741)
                      +..+..+|++|...|+.+       .|...|.+++...  |    +...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            345566777777777643       3444444444332  1    12456777888888888888888888888765433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.45  E-value=0.15  Score=47.03  Aligned_cols=58  Identities=21%  Similarity=0.334  Sum_probs=39.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (741)
Q Consensus       527 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  584 (741)
                      ....++.+.|.+.|.+++...|+....|+.+|....+.|+.+.|.+.|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3455666666667777777766666667777776666677777777777777666654

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.30  E-value=5.8  Score=42.21  Aligned_cols=35  Identities=20%  Similarity=0.062  Sum_probs=29.2

Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL  408 (741)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al  408 (741)
                      ....|..++.++.++.+...+|+.+.|....++++
T Consensus       277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L  311 (665)
T KOG2422|consen  277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGL  311 (665)
T ss_pred             eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            34568889999999999999999988888887776

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.19  E-value=0.64  Score=54.07  Aligned_cols=175  Identities=10%  Similarity=0.044  Sum_probs=123.6

Q ss_pred             CchHHHHhhhhHHHhcCChhhHHH------HHHHh-hccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc
Q 004622          303 GTHDVHDKLSSDSASLNDSNTNSE------SYSKS-SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK  375 (741)
Q Consensus       303 ~~~~~~~~lg~~~~~~~~~~~A~~------~~~~a-~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  375 (741)
                      ..++.....|......+.+.+|.+      .+... -..+|.....+..++.++.+.|++++|+....++....-.....
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            455566667777777888887777      66633 34577888899999999999999999999766665544455566


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-
Q 004622          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-  446 (741)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-  446 (741)
                      ..+.....+..++...+..++...|...+.++...        .|.-.....+++.++...++++.|+.+.+.++.... 
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            77777788888888888888888888888888763        344344556777777777888888888888876432 


Q ss_pred             -------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622          447 -------SAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (741)
Q Consensus       447 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (741)
                             .....+..++..+...+++..|+...+....
T Consensus      1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence                   1233455556666666666655555554443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=1.2  Score=47.54  Aligned_cols=97  Identities=16%  Similarity=0.045  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004622          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (741)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l  455 (741)
                      ..+.+.|.-++...+|..+++.|...+...|.+      ......++.||..+.+.+.|.++++.+-+.+|.++-....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            345677888899999999999999999887765      35667889999999999999999999999999999888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhh
Q 004622          456 GQARAALGESVEAIQDLSKALEF  478 (741)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~  478 (741)
                      -.+....|.-++|+.........
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            88888999999999988877654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.87  E-value=6.6  Score=34.94  Aligned_cols=143  Identities=15%  Similarity=0.098  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHH
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQ  457 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~  457 (741)
                      -|..+.-+.+.+..++|+.-|..+-+..-..  .-+....+.+..+.|+...|+..|..+-...|-.    ..+...-+.
T Consensus        61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~  140 (221)
T COG4649          61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY  140 (221)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence            3455666677899999999998877654443  3566778899999999999999999987654422    124555677


Q ss_pred             HHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004622          458 ARAALGESVEAIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (741)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  527 (741)
                      ++...|.|+.-....+..-. .+|-...+.-.||..-++.|++.+|.+.|..... +...+....+.+.+.
T Consensus       141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            78889999887766654322 2344466788899999999999999999999876 444454444444443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.84  E-value=1.3  Score=51.61  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------C
Q 004622          381 VDFRLSRGIAQVNEGKYASAIS------IFDQI-LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------N  445 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~  445 (741)
                      ..-....|......|.+.+|.+      .+... -...|.....+..++.++...|++++|+..-.++.-+        .
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            3445667777777778877777      44422 2245666777888888888888888888776665422        2


Q ss_pred             CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (741)
Q Consensus       446 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (741)
                      |+....+.+++......++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.++..
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            344556666776666666777777766666543        2333444556666666666666676666666653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.81  E-value=4.6  Score=42.97  Aligned_cols=45  Identities=22%  Similarity=0.193  Sum_probs=22.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~  441 (741)
                      .+.|+.+.|.+..++     .+++..|..+|.....+|+++-|.++|+++
T Consensus       329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            344555555443321     223455555555555555555555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.85  E-value=0.59  Score=29.50  Aligned_cols=33  Identities=12%  Similarity=0.038  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCCC
Q 004622          104 QAYILKGCAFSALGRKEEALSV--WEKGYEHALHQ  136 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~--~~~al~l~p~~  136 (741)
                      +.++.+|..+...|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566777788888888888888  44776676654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.66  E-value=0.35  Score=46.72  Aligned_cols=84  Identities=7%  Similarity=0.058  Sum_probs=49.0

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (741)
Q Consensus       439 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~  517 (741)
                      .++-...|+++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++.+|+++
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            33344455566666666655555566666666666666666666666554 33445555666666666666666666666


Q ss_pred             HHHHH
Q 004622          518 SAYTY  522 (741)
Q Consensus       518 ~~~~~  522 (741)
                      ..|..
T Consensus       177 ~iw~e  181 (435)
T COG5191         177 RIWIE  181 (435)
T ss_pred             hHHHH
Confidence            55543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.64  E-value=17  Score=38.98  Aligned_cols=155  Identities=16%  Similarity=0.058  Sum_probs=88.3

Q ss_pred             cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----C-----------
Q 004622          394 EGKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-----N-----------  445 (741)
Q Consensus       394 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~-----------  445 (741)
                      ..-|++|...|.-++..            .|-+.+.+..++.+...+|+.+.|.....+++=.     .           
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45677888777777654            2445677778888888888888888887777621     1           


Q ss_pred             -----CCcHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH----
Q 004622          446 -----PSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN-FKFKDFNAAVEDLSACVK----  511 (741)
Q Consensus       446 -----~~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al~----  511 (741)
                           |.+-.   +++..-..+.+.|-+..|.++++-.++++|. ++-+...+-.+| .+..+|.--+..++..-.    
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l  410 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL  410 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence                 11211   2222333445567777777777777777776 555444444333 345556555555554422    


Q ss_pred             -hCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcc
Q 004622          512 -LDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDRN  549 (741)
Q Consensus       512 -~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~  549 (741)
                       .-|+-. .-..+|..|.....   -..|...+.+|+...|.
T Consensus       411 ~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  411 SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence             223322 12234444544443   45566667777766664

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.36  E-value=2.9  Score=40.92  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH  132 (741)
Q Consensus        72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  132 (741)
                      +..++..+...|+++.++..+++.+..+|.+-++|..+-.+|...|+...|+..|++.-++
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            5678888999999999999999999999999999999999999999999999999997653

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=91.27  E-value=17  Score=36.20  Aligned_cols=269  Identities=13%  Similarity=0.048  Sum_probs=139.5

Q ss_pred             hhhHHHhcCChhhHHHHHHHhhcc--CCCC--------chhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622          311 LSSDSASLNDSNTNSESYSKSSIS--DNKS--------SDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS  380 (741)
Q Consensus       311 lg~~~~~~~~~~~A~~~~~~a~~~--~p~~--------~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  380 (741)
                      ..+.....+++++++..|...+..  .|.+        ......++..+.+.|+..+-.........+... +.  .+..
T Consensus        10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~-v~--Kaka   86 (411)
T KOG1463|consen   10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSS-VS--KAKA   86 (411)
T ss_pred             HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH-hh--hHHH
Confidence            445556667788999999998873  2221        236678888898888887766643333332211 10  0111


Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----C--CC
Q 004622          381 VDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQS----N--PS  447 (741)
Q Consensus       381 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~--~~  447 (741)
                      +...-.+-... ...+....-+..+...++-....      ...-..+...|...++|.+|+......+..    +  +.
T Consensus        87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l  166 (411)
T KOG1463|consen   87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL  166 (411)
T ss_pred             HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            11111111111 11233334444444444322111      112235667777778888877776655432    2  12


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCH
Q 004622          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFE-----PNSA--DILHERGIVNFKFKDFNAAVEDLSACVKLDK---ENK  517 (741)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~  517 (741)
                      -.+++..-..+|....+..+|...+..|-...     |...  ..-..-|.++....+|..|..+|-++++-..   ++.
T Consensus       167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v  246 (411)
T KOG1463|consen  167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV  246 (411)
T ss_pred             eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence            23455555666777777777766666554321     2111  1222234555556777777777777776421   112


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCcccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCc
Q 004622          518 ---SAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQDL--ANSEKALECLQQVLYIDK  582 (741)
Q Consensus       518 ---~~~~~la~~~~~~~~~~~A~~~--~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p  582 (741)
                         ..+..+-.|-...+..++--..  -..+++....+..++...+.++...  .+|+.|+..|..-+..+|
T Consensus       247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence               2233334444455555543333  2344555555566666666666443  456666666666555444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.26  E-value=0.5  Score=30.83  Aligned_cols=30  Identities=37%  Similarity=0.354  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622          104 QAYILKGCAFSALGRKEEALSVWEKGYEHA  133 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  133 (741)
                      .++..+|.+|...|++++|+..+++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            456778888888888888888888877553

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.08  E-value=8.3  Score=39.40  Aligned_cols=147  Identities=19%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 004622          393 NEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (741)
Q Consensus       393 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~  471 (741)
                      ..|.+ .+++..=.+.+..+|+...+|...-.++...-...          +..|..            ...-.++-+.+
T Consensus        40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~~e------------k~~~ld~eL~~   97 (421)
T KOG0529|consen   40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEPLE------------KQALLDEELKY   97 (421)
T ss_pred             hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCHHH------------HHHhhHHHHHH
Confidence            34444 46667777777788887777665544433221100          111100            01123444444


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 004622          472 LSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLALSSI----GEYKKAEEAHLKAIQ  545 (741)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~  545 (741)
                      ...+++.+|+...+|+.+..++.+.+  ++..=+.+++++++.+|.+..+|...=.+....    ....+=+.+..+++.
T Consensus        98 ~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~  177 (421)
T KOG0529|consen   98 VESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN  177 (421)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence            55555555555555555555554443  234445555555555555544443332222211    113344445555555


Q ss_pred             hCcccHHHHHHHHHHH
Q 004622          546 LDRNFLEAWGHLTQFY  561 (741)
Q Consensus       546 ~~~~~~~~~~~la~~~  561 (741)
                      .++.+..+|.....++
T Consensus       178 ~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  178 DNFSNYSAWHYRSLLL  193 (421)
T ss_pred             ccchhhhHHHHHHHHH
Confidence            5555555555444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.93  E-value=5  Score=42.69  Aligned_cols=133  Identities=19%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  535 (741)
                      ......++++++.+..... ++-|.- ......++..+.+.|-++.|+...        .++...+.+   ..+.|+.+.
T Consensus       269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHH
Confidence            3344578999988777522 122222 455677788888889888887654        345555554   457799988


Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      |.+..++     .+++..|..||......|+++-|..+|+++-.        +..+..+|...|+.+.=.+..+.+...
T Consensus       337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            8776433     34678999999999999999999999887632        345666777777765555555444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.90  E-value=0.37  Score=27.81  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHH
Q 004622          104 QAYILKGCAFSALGRKEEALSVWE  127 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~~~  127 (741)
                      .+++.+|.++...|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356777777777777777777664

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.76  E-value=0.5  Score=30.84  Aligned_cols=30  Identities=17%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             hhHHHHHHHHHhhhcHHHHHHHHHHHHHhC
Q 004622           70 QDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (741)
Q Consensus        70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~   99 (741)
                      ..+.++|.+|...|++++|+..+++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            457899999999999999999999998763

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.73  E-value=0.55  Score=45.42  Aligned_cols=86  Identities=12%  Similarity=0.044  Sum_probs=66.5

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622          404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR-RGQARAALGESVEAIQDLSKALEFEPNS  482 (741)
Q Consensus       404 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (741)
                      |.++....|+++..|...+......|.+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++.+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            445555667778888888877778888888888888888888888887766 4445667788888888888888888888


Q ss_pred             HHHHHHH
Q 004622          483 ADILHER  489 (741)
Q Consensus       483 ~~~~~~l  489 (741)
                      +.+|...
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            8776654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.71  E-value=1.9  Score=41.59  Aligned_cols=67  Identities=18%  Similarity=0.126  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus        72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      ..++=.+++..++++.|....++.+.++|+++-.+--+|.+|.++|-+.-|+.+++..++..|+.+.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3455668999999999999999999999999999999999999999999999999999999999988

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.70  E-value=0.57  Score=29.97  Aligned_cols=30  Identities=27%  Similarity=0.206  Sum_probs=23.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622          104 QAYILKGCAFSALGRKEEALSVWEKGYEHA  133 (741)
Q Consensus       104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  133 (741)
                      +.+..+|.+-+..++|++|+..|+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788888888888888888888887664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.68  E-value=11  Score=38.70  Aligned_cols=97  Identities=23%  Similarity=0.217  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHH
Q 004622          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVE  504 (741)
Q Consensus       431 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~  504 (741)
                      .++-+.+...+++.+|+...+|+.+..++.+.+.  +..-++..+++++.+|.+-.+|...=.+....    ....+=+.
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~  170 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE  170 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence            3444555555555555555555555555554432  44555555555555555544443332222211    12344455


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Q 004622          505 DLSACVKLDKENKSAYTYLGLAL  527 (741)
Q Consensus       505 ~~~~al~~~p~~~~~~~~la~~~  527 (741)
                      +..+++..++.+..+|.....++
T Consensus       171 ftt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  171 FTTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             HHHHHHhccchhhhHHHHHHHHH
Confidence            55555555555555555544443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.59  E-value=1.8  Score=32.72  Aligned_cols=57  Identities=9%  Similarity=-0.029  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCC-hhh---HHHHHHHHHhhhcHHHHHHHHHHHHH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQSYE-IQD---ICNRAFCYSQLELHKHVIRDCDKALQ   97 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~~-~~~---~~~~a~~~~~~g~~~~A~~~~~~al~   97 (741)
                      -++.++|.+.+.++|+..++++++..++ +..   +..+..+|...|+|++.+...-.=+.
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788999999999999999986632 222   34566788888999988877655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=90.24  E-value=21  Score=36.43  Aligned_cols=124  Identities=15%  Similarity=-0.009  Sum_probs=58.9

Q ss_pred             HHcCChHHHHHHHHHHHhhC-CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-CHHHHHHHH
Q 004622          460 AALGESVEAIQDLSKALEFE-PNS--------ADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKE-NKSAYTYLG  524 (741)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~-p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~la  524 (741)
                      +..+++.+|...-+..+..- -.+        +..|+.+..+|...|+...-...+...+..     +.. -....+.+-
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL  216 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL  216 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence            34466666666655544321 111        234555555555555544444444433332     111 122334445


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622          525 LALSSIGEYKKAEEAHLKAIQL----DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       525 ~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  583 (741)
                      ..|...+.|+.|.....+..--    +...+..++.+|.+..-+++|..|.+++-+|+...|.
T Consensus       217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            5555555666655554444311    0112334455566666666666666666666665554

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.24  E-value=27  Score=36.86  Aligned_cols=202  Identities=11%  Similarity=-0.027  Sum_probs=127.4

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la  456 (741)
                      .+.+..++..+-.++-..-.+.-...++.+++....+ -.+++.++.||... ..++-...+++.++.+-++...-..++
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa  139 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA  139 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence            3444445555555565666666677788888876554 78889999999888 567778888999998888888888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhhC-CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH-HHHHHHHHH
Q 004622          457 QARAALGESVEAIQDLSKALEFE-PN--S---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA-YTYLGLALS  528 (741)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~-p~--~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~-~~~la~~~~  528 (741)
                      ..|.. ++...+...|.+++... |.  +   .++|..+-.  +--.+.+.-+....+.-...... ..+ +..+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            88866 88888999999887653 21  1   122222211  11223333333333332222111 122 222234455


Q ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHhhCcc
Q 004622          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------------------LANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       529 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~al~~~p~  583 (741)
                      ...++++|+..+...++.+..+..+.-++...+..                    -.++.+++.-|++.+..+..
T Consensus       217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG  291 (711)
T COG1747         217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG  291 (711)
T ss_pred             cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence            67788888888888888887777666665554444                    34567777777777765543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.97  E-value=1.6  Score=35.10  Aligned_cols=60  Identities=15%  Similarity=0.072  Sum_probs=40.5

Q ss_pred             HHhhhcHHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622           79 YSQLELHKHVIRDCDKALQLDP---------TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus        79 ~~~~g~~~~A~~~~~~al~~~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      .++.|+|.+|++.+.+......         ...-+.+.+|.++...|++++|+..++.++++...+.+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            3455666666555555444321         12346788888999999999999999999887655444

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.76  E-value=2  Score=34.53  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=47.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcc-----CC-----hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCh
Q 004622           44 AKLCSLRNWSKAIRILDSLLAQS-----YE-----IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL  103 (741)
Q Consensus        44 ~~~~~~g~~~~Ai~~~~~al~~~-----~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  103 (741)
                      ......|||..|++.+.+.....     ..     ..+..++|.++...|++++|+..+++++.+-....
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            45678999999988877776522     11     23368899999999999999999999999865443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=89.63  E-value=23  Score=35.05  Aligned_cols=140  Identities=16%  Similarity=0.041  Sum_probs=78.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  465 (741)
                      .+-.......+..+-++.-..+++++|....++..++.-  ...-..+|...++++++...    ..++........|..
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~  262 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQ  262 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccc
Confidence            344445566777778888888888888888888777653  23345677777777776432    112222222222222


Q ss_pred             HHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 004622          466 VEAIQDLSKALEFEPNSA--DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       466 ~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~  538 (741)
                      .+|.      .+.+ .+.  .+-..++.+..++|+..+|++.++...+..|-..  ..+-++-..+....-|.+...
T Consensus       263 ~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa  332 (556)
T KOG3807|consen  263 HEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA  332 (556)
T ss_pred             hhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221      1111 122  2345677888888888888888888777666322  233344444444444443333

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.18  E-value=30  Score=35.89  Aligned_cols=206  Identities=9%  Similarity=-0.025  Sum_probs=142.2

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 004622          437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----  512 (741)
Q Consensus       437 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----  512 (741)
                      .+++++...|-.+++|+.........++-+.|+...++++...|.   ....++.+|...++-+....+|+++.+.    
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~  366 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK  366 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence            467778888888999999999999999999999999999888775   6667778887777777766777666532    


Q ss_pred             --------------CCCC-HH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH-HHHHcC
Q 004622          513 --------------DKEN-KS-----------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ-FYQDLA  565 (741)
Q Consensus       513 --------------~p~~-~~-----------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~~~~  565 (741)
                                    +|.. ..           ++...-..-.+..-.+.|...|.++-+..--...++..-|. -+...|
T Consensus       367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~  446 (660)
T COG5107         367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG  446 (660)
T ss_pred             HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence                          1110 11           11112222233444667777777776543222333333232 245679


Q ss_pred             ChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004622          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTR  645 (741)
Q Consensus       566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  645 (741)
                      ++.-|...|+-.+...|+.+..-...-..+...++-..|...|+.++..-.......+|..+...-..-|+...++...+
T Consensus       447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~  526 (660)
T COG5107         447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEE  526 (660)
T ss_pred             CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence            99999999999999999988777777778888999999999999887643322233446666677777888877764433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=88.47  E-value=3  Score=42.31  Aligned_cols=91  Identities=20%  Similarity=0.058  Sum_probs=67.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDP--------MY----------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~  447 (741)
                      .-|..++.+++|..|.--|..+++...        ..          ..+--.+..||.++++.+.|+....+.+.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            334556666666666666666665421        11          123456888999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004622          448 AGEAWKRRGQARAALGESVEAIQDLSKAL  476 (741)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al  476 (741)
                      ...-+...|.++....+|.+|-+.+--+.
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888899999999999988877655443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.37  E-value=1  Score=28.80  Aligned_cols=30  Identities=20%  Similarity=0.096  Sum_probs=25.5

Q ss_pred             hhHHHHHHHHHhhhcHHHHHHHHHHHHHhC
Q 004622           70 QDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (741)
Q Consensus        70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~   99 (741)
                      ..+..+|.+.+..++|++|+.+++++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            346778889999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.33  E-value=9.7  Score=35.08  Aligned_cols=73  Identities=19%  Similarity=0.189  Sum_probs=49.0

Q ss_pred             cHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 004622          430 ELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN----SADILHERGIVNFKFKDFNAAV  503 (741)
Q Consensus       430 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~  503 (741)
                      .-+.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+.    +++++..|+.++.+.|+++.|.
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            345566555544322 1245677777777665 56778888888888877543    4778888888888888888774

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.27  E-value=3.3  Score=39.98  Aligned_cols=66  Identities=15%  Similarity=0.043  Sum_probs=42.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 004622          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW  554 (741)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  554 (741)
                      +=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            334555666666666666666666666666666666666666666666666666666666655543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=88.05  E-value=34  Score=35.06  Aligned_cols=129  Identities=13%  Similarity=0.034  Sum_probs=84.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----C-CcHHHHH
Q 004622          389 IAQVNEGKYASAISIFDQILKEDP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQSN-----P-SAGEAWK  453 (741)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~-~~~~~~~  453 (741)
                      ..++.++++.+|..+-+..+..-.         -.+..|+.+..+|...|+...-...+...+...     . .......
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN  213 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN  213 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence            344456888888887776654211         124567778888888888666555555444321     1 1223445


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622          454 RRGQARAALGESVEAIQDLSKALEFE--P--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (741)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~--p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  517 (741)
                      .+-..|...+.|+.|-....+..--.  .  .-+..++.+|.+..-+++|..|.+++-.++...|.+.
T Consensus       214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            56667777888888888776654111  1  1245677888888889999999999999999988753

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.94  E-value=29  Score=34.11  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=15.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004622          482 SADILHERGIVNFKFKDFNAAVEDL  506 (741)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~  506 (741)
                      ++..+..+|..+++.|++.+|..+|
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            4666666677776666666665554

; PDB: 3LKU_E 2WPV_G.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.83  E-value=40  Score=35.67  Aligned_cols=202  Identities=12%  Similarity=-0.078  Sum_probs=131.7

Q ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004622          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (741)
Q Consensus       412 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (741)
                      |-+-..+..+-.++.....+.-....+.+.+... .+.-+++.++.+|... ..++-...+++.++.+-++...-..++.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            4344455556666666666777777788888765 4567888999999887 6677888999999999888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHH-HHHHHHHHH
Q 004622          492 VNFKFKDFNAAVEDLSACVKL-DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAW-GHLTQFYQD  563 (741)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~-~~la~~~~~  563 (741)
                      .|.+ ++-..+..+|.+++.. -|..     ..+|..+-.  +--.+.+.-+....+.-.... ....+. ..+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            8877 8889999999998864 2311     122322211  112233333333333222211 112222 222244566


Q ss_pred             cCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH--------------------CCChHHHHHHHHHhhhhcCCc
Q 004622          564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--------------------LGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       564 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~~~~  618 (741)
                      ..++.+|+..+...++.+..+..+.-.+...+..                    -.++.+++..|++.+..+..+
T Consensus       218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence            7889999999999998888777766665555444                    456778888888887766555

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=87.38  E-value=56  Score=36.85  Aligned_cols=258  Identities=11%  Similarity=0.048  Sum_probs=143.9

Q ss_pred             CChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHH---HcC
Q 004622          319 NDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV---NEG  395 (741)
Q Consensus       319 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~g  395 (741)
                      +.-+.-+..++.-+.+++.+......+..++...|++++...        ....+....|..+..|.....-..   ..+
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~--------ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~  164 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQ--------ARLEMSEIAPLPPHLWLEWLKDELSMTQSE  164 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHH--------HHHHHHHhcCCChHHHHHHHHHHHhhccCc
Confidence            344556777788888888899999999999999999887766        555555666667766665544333   347


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcccHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHH
Q 004622          396 KYASAISIFDQILKEDPMYPEALIGRGTA-------RAFQRELEAAISDFTEAIQSNPS-------AGEAWKRRGQARAA  461 (741)
Q Consensus       396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~-------~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~  461 (741)
                      +..++...|++++... +++..|...+..       +...++++.-...|.+++..-..       ....+..+-..|..
T Consensus       165 ~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~  243 (881)
T KOG0128|consen  165 ERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLC  243 (881)
T ss_pred             chhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence            8888999999998643 334444444433       34456677777788887764221       22334444444544


Q ss_pred             cCChHHHHHHHHHHHhhCCCCHHH----HHHHH---HHHHHcCCHHHHHHHHHH-------HHHhCCCCHHHHHHHHHHH
Q 004622          462 LGESVEAIQDLSKALEFEPNSADI----LHERG---IVNFKFKDFNAAVEDLSA-------CVKLDKENKSAYTYLGLAL  527 (741)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~----~~~la---~~~~~~~~~~~A~~~~~~-------al~~~p~~~~~~~~la~~~  527 (741)
                      .-..++-+.++...+... -+.++    +....   .......+++.|..-+.+       .++..|.-...|..+-...
T Consensus       244 n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe  322 (881)
T KOG0128|consen  244 NVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFE  322 (881)
T ss_pred             hHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            444455666666655544 22211    11111   011122333333333222       2222333334444444555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCcccHH
Q 004622          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFSK  586 (741)
Q Consensus       528 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~  586 (741)
                      ...|+.-.-...+++++.-.+.+...|...+...- .++-.+.+...+.+++...|-...
T Consensus       323 ~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd  382 (881)
T KOG0128|consen  323 KKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD  382 (881)
T ss_pred             HhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH
Confidence            55666665566666666666666666655554332 223334445555555555554333

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=86.83  E-value=8  Score=29.39  Aligned_cols=60  Identities=7%  Similarity=0.042  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcccHHHHHHHHHHHHH
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL---IGRGTARAFQRELEAAISDFTEAIQ  443 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l~  443 (741)
                      .+..|.-++...+.++|+..++++++..++.+.-+   -.+..+|...|++.+.+.+..+-+.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667778888888888888888777765443   4445566777777777776554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=86.14  E-value=36  Score=33.41  Aligned_cols=199  Identities=14%  Similarity=0.048  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcccHH-HHHHHHHHHHHh------CCCcHHH
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQRELE-AAISDFTEAIQS------NPSAGEA  451 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~------~~~~~~~  451 (741)
                      ++.=+..+.+.|++..|.++..-.++.     .+.+......++.+....+.-+ +-....+++++-      .-.++..
T Consensus        13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L   92 (260)
T PF04190_consen   13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL   92 (260)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred             HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence            344456666777777666655554442     2333444455665555554222 222333333332      2346889


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc
Q 004622          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL-ALSSI  530 (741)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~  530 (741)
                      +..+|..+...|++.+|..+|-..     +++......-             -...-..+..|.....+...+. .|...
T Consensus        93 H~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~-------------ll~~~~~~~~~~e~dlfi~RaVL~yL~l  154 (260)
T PF04190_consen   93 HHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVM-------------LLEEWSTKGYPSEADLFIARAVLQYLCL  154 (260)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHH-------------HHHHHHHHTSS--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHH-------------HHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence            999999999999998888777432     1222211100             0011112234444444444433 35556


Q ss_pred             CCHHHHHHHHHHHHHh----Cc----------ccHHHHH--HHHHHHHHcCC---hHHHHHHHHHHHhhCcccHHHHHHH
Q 004622          531 GEYKKAEEAHLKAIQL----DR----------NFLEAWG--HLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAYHLR  591 (741)
Q Consensus       531 ~~~~~A~~~~~~al~~----~~----------~~~~~~~--~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l  591 (741)
                      ++...|...+....+.    .|          .....++  .+-..-++.++   +..-.+.|+..++.+|.....+..+
T Consensus       155 ~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~I  234 (260)
T PF04190_consen  155 GNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKI  234 (260)
T ss_dssp             TBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence            7777777766555544    22          1111111  11111223333   3333445556666677777778888


Q ss_pred             HHHHHHCCC
Q 004622          592 GLLLHGLGQ  600 (741)
Q Consensus       592 a~~~~~~g~  600 (741)
                      |..|+....
T Consensus       235 G~~yFgi~~  243 (260)
T PF04190_consen  235 GQLYFGIQP  243 (260)
T ss_dssp             HHHHH---S
T ss_pred             HHHHCCCCC
Confidence            888877543

; PDB: 3LKU_E 2WPV_G.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=86.12  E-value=1  Score=44.66  Aligned_cols=133  Identities=15%  Similarity=0.160  Sum_probs=85.5

Q ss_pred             CchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHH
Q 004622          303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD  382 (741)
Q Consensus       303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  382 (741)
                      ...+..+..|+..++.++++.|..-|.++...-...            ...+-.+..+           ++.........
T Consensus       220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~------------s~~~~~e~~~-----------~~~~~~~~r~~  276 (372)
T KOG0546|consen  220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQ------------SRDREKEQEN-----------RIPPLRELRFS  276 (372)
T ss_pred             hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccc------------cccccccccc-----------ccccccccccc
Confidence            334556678999999999999999999988643110            0000000000           01111222223


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  458 (741)
                      .....+.+-+..+.+..|+.....++..++....+++..+..+....++++|++.+..+....|++......+...
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV  352 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence            3344667777777888887777777777777777888888888888888888888888888888777655444443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.99  E-value=2.9  Score=26.38  Aligned_cols=18  Identities=28%  Similarity=0.383  Sum_probs=6.9

Q ss_pred             HHHHHHHHcCCHHHHHHH
Q 004622          386 SRGIAQVNEGKYASAISI  403 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~  403 (741)
                      .+|..+...|++++|+..
T Consensus         6 ~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    6 GLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHH
Confidence            333344444444444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.68  E-value=1.2  Score=25.64  Aligned_cols=21  Identities=19%  Similarity=0.026  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHCCChHHHHHHH
Q 004622          588 YHLRGLLLHGLGQHKKAIKDL  608 (741)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~  608 (741)
                      ...+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            334444444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.44  E-value=5  Score=39.34  Aligned_cols=64  Identities=16%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (741)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~  444 (741)
                      ..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3455677888888888888888888888888888888888888888888888888888877653

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.19  E-value=3.7  Score=35.67  Aligned_cols=54  Identities=22%  Similarity=0.135  Sum_probs=41.4

Q ss_pred             ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622           68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (741)
Q Consensus        68 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~  121 (741)
                      .......+|...+..|+|.-|...++.++..+|++..++..++.+|.++|.-.+
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            344456778888888999999999999999999999999999999988876543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.04  E-value=6.5  Score=36.20  Aligned_cols=71  Identities=17%  Similarity=0.049  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHhcc--CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHcCCHHHH
Q 004622           51 NWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL----LQAYILKGCAFSALGRKEEA  122 (741)
Q Consensus        51 ~~~~Ai~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A  122 (741)
                      +-+.|...|-++-..+  .++...+.+|..|. ..+.++|+..+.++|++.+..    ++.+..++.++.++|+++.|
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            3456666666655444  55555566665555 578888888888888875433    66788888888888888776

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.93  E-value=40  Score=32.84  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=11.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 004622          522 YLGLALSSIGEYKKAEEAHLKAI  544 (741)
Q Consensus       522 ~la~~~~~~~~~~~A~~~~~~al  544 (741)
                      .+|..|+..|++++|+.+|+.+.
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~  205 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAA  205 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            44455555555555555555543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.81  E-value=2.8  Score=40.47  Aligned_cols=57  Identities=23%  Similarity=0.196  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (741)
Q Consensus        73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  129 (741)
                      ...+..|...|.+.+|+..+++++.+||-+-.-+..+-.+|..+|+-=+|...|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            455678999999999999999999999999999999999999999988999988884

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.70  E-value=37  Score=33.09  Aligned_cols=25  Identities=8%  Similarity=-0.019  Sum_probs=16.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILK  409 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~  409 (741)
                      +.+..+++..|+..+|+.-|++-+.
T Consensus        14 ~ki~rl~l~~~~~~~Av~q~~~H~~   38 (247)
T PF11817_consen   14 FKICRLYLWLNQPTEAVRQFRAHID   38 (247)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            4555677777777777777766554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=83.97  E-value=82  Score=35.65  Aligned_cols=246  Identities=10%  Similarity=-0.045  Sum_probs=109.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 004622          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (741)
Q Consensus       392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~  471 (741)
                      ...+++..-+.++.    ..|.+.......+......|+.++|.....++.......+.....+-..+...|........
T Consensus       110 a~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w  185 (644)
T PRK11619        110 ARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYL  185 (644)
T ss_pred             HHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHH
Confidence            34566666655332    24777777777788888889888887777777654433333333332333222322221111


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHH-----------H-HcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 004622          472 LSKALEFEPNSADILHERGIVN-----------F-KFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~-----------~-~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~  538 (741)
                      -+--+.+...+......+...+           . -..+...+...+..   ..|... .....++..-....+.+.|..
T Consensus       186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~  262 (644)
T PRK11619        186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARL  262 (644)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence            1111111111111111111111           0 00111111111110   011111 112223333344556677777


Q ss_pred             HHHHHHHhCccc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622          539 AHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       539 ~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      .+.+.....+-+    ..++..+|.-....+...+|..++..+..... +.........+....++++.+..++...-..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~  341 (644)
T PRK11619        263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPME  341 (644)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence            776543333211    22333444333333225566666665443221 2233333333444667776666666654322


Q ss_pred             cCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622          615 MMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL  647 (741)
Q Consensus       615 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  647 (741)
                      ..+.  ....|++|+.+...|+.++|...|+.+
T Consensus       342 ~~~~--~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        342 AKEK--DEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             hccC--HhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2222  222677777777777777777666655

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=83.86  E-value=12  Score=37.17  Aligned_cols=92  Identities=16%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             HhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHH
Q 004622           47 CSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSALGRKEEALS  124 (741)
Q Consensus        47 ~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~  124 (741)
                      -+.-||..=..+|.-...+.+++..-.|||.+..+.-=.+.++...+-....  -..+...+-.+|..+.++|+.++|..
T Consensus       307 aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~  386 (415)
T COG4941         307 AEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARA  386 (415)
T ss_pred             cCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHH
Confidence            4667887777777776667799999999999999888888888887665554  23555688889999999999999999


Q ss_pred             HHHHHHHhcCCChH
Q 004622          125 VWEKGYEHALHQSA  138 (741)
Q Consensus       125 ~~~~al~l~p~~~~  138 (741)
                      .|++++.+.++..+
T Consensus       387 aydrAi~La~~~ae  400 (415)
T COG4941         387 AYDRAIALARNAAE  400 (415)
T ss_pred             HHHHHHHhcCChHH
Confidence            99999999998877

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.39  E-value=2.1  Score=28.46  Aligned_cols=25  Identities=8%  Similarity=0.041  Sum_probs=16.9

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHH
Q 004622           73 CNRAFCYSQLELHKHVIRDCDKALQ   97 (741)
Q Consensus        73 ~~~a~~~~~~g~~~~A~~~~~~al~   97 (741)
                      +++|.+|+.+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566677777777777777777663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=83.22  E-value=88  Score=35.42  Aligned_cols=262  Identities=10%  Similarity=-0.056  Sum_probs=139.2

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------------HHHHHHHHHHHHcccHHHHHHH
Q 004622          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------------------EALIGRGTARAFQRELEAAISD  437 (741)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------------~~~~~la~~~~~~~~~~~A~~~  437 (741)
                      ..|.+.......+......|+-++|.....++-......+                  .-+.......+..|+...|...
T Consensus       124 ~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l  203 (644)
T PRK11619        124 EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYL  203 (644)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3466666667777778888888777776666544332211                  1222223333444444444333


Q ss_pred             HHHH-------------HHhCCC-----------cH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHH
Q 004622          438 FTEA-------------IQSNPS-----------AG--EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----DILH  487 (741)
Q Consensus       438 ~~~~-------------l~~~~~-----------~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~  487 (741)
                      ...+             +..+|.           +.  .....++.......+.+.|...+.+.....+-+.    .++.
T Consensus       204 ~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~  283 (644)
T PRK11619        204 AKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRD  283 (644)
T ss_pred             HHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            2211             111111           00  1112223333344556666666665444333222    2233


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Q 004622          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (741)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~  567 (741)
                      .+|.-....+...+|...+..+.... .+..............++++....++...-..........+.+|..+...|+.
T Consensus       284 ~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~  362 (644)
T PRK11619        284 IVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRK  362 (644)
T ss_pred             HHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCH
Confidence            34433333322455666666544322 23333444444555788888777777765443344566778888888888999


Q ss_pred             HHHHHHHHHHHhhCccc----------------------H------HHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch
Q 004622          568 EKALECLQQVLYIDKRF----------------------S------KAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL  619 (741)
Q Consensus       568 ~~A~~~~~~al~~~p~~----------------------~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  619 (741)
                      ++|...|+++.... +.                      .      ......+..+...|....|...+..++.. .+  
T Consensus       363 ~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~--  438 (644)
T PRK11619        363 AEAEEILRQLMQQR-GFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-RS--  438 (644)
T ss_pred             HHHHHHHHHHhcCC-CcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC--
Confidence            99988888875421 10                      0      01233455566667777777776666554 22  


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHH
Q 004622          620 IWNLTRWRNLCFNAWPFIRRRLLC  643 (741)
Q Consensus       620 ~~~~~~~la~~~~~~g~~~~A~~~  643 (741)
                      ... ...++.+....|.++.++..
T Consensus       439 ~~~-~~~la~~A~~~g~~~~ai~~  461 (644)
T PRK11619        439 KTE-QAQLARYAFNQQWWDLSVQA  461 (644)
T ss_pred             HHH-HHHHHHHHHHCCCHHHHHHH
Confidence            233 56666777777777777643

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.96  E-value=12  Score=34.67  Aligned_cols=63  Identities=11%  Similarity=-0.034  Sum_probs=54.1

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHH
Q 004622           77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (741)
Q Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  139 (741)
                      ..+++.+...+|+...+.-++.+|.+...+..+-..|.-.|+|+.|...++-+-.++|+....
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~   71 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG   71 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence            356777888889999998899999998888888888999999999999999999999888773

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.44  E-value=27  Score=36.49  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHH--HHHHHHHcccHHHHHHHHHHHHHh
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALIG--RGTARAFQRELEAAISDFTEAIQS  444 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~l~~  444 (741)
                      ....+..+++.++|..|...|+.+...-|....  .+..  .|..+...-++.+|.+.++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            346677888999999999999999886344333  3333  345556778899999999988765

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=82.24  E-value=38  Score=30.57  Aligned_cols=184  Identities=16%  Similarity=0.116  Sum_probs=113.9

Q ss_pred             cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622          380 SVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARA-----FQRELEAAISDFTEAIQSNPSAGEAWK  453 (741)
Q Consensus       380 ~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~~~~~~A~~~~~~~l~~~~~~~~~~~  453 (741)
                      .++....+|..+.. +.+|++|..+|..--..+. .+..-+.+|..+.     ..++...|++.+..+-.  .+.+.+..
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~  109 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR  109 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence            34455556655543 5678888888876554333 2566666665554     23578889999988765  55677888


Q ss_pred             HHHHHHHHc-----C--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004622          454 RRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (741)
Q Consensus       454 ~la~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  526 (741)
                      .+|.++..-     +  +..+|.+++.++-.+.  +..+.+.|...|+.-.+  +       +....|..... ...+..
T Consensus       110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~~~  177 (248)
T KOG4014|consen  110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRAEL  177 (248)
T ss_pred             hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchhhh
Confidence            888777643     2  3678999999887765  56666667666654321  1       11123311100 012334


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CChHHHHHHHHHHHhh
Q 004622          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYI  580 (741)
Q Consensus       527 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~  580 (741)
                      +.-..+.+.|.++--++-++.  ++.+..++.+.|..-    ++-++|..+-.++.++
T Consensus       178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            445678888988888887764  456666777666432    3567777777777665

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=81.99  E-value=75  Score=33.75  Aligned_cols=90  Identities=13%  Similarity=0.009  Sum_probs=73.6

Q ss_pred             hHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCC-HHHHH
Q 004622          323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAI  401 (741)
Q Consensus       323 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~  401 (741)
                      .-...|+.+....+.|+..+........+.+.+.+..+        .+..+...+|.+++.|..-|.-.+..+. .+.|.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~k--------i~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saR  160 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKK--------IFAAMLAKHPNNPDLWIYAAKWEFEINLNIESAR  160 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHH--------HHHHHHHhCCCCchhHHhhhhhHHhhccchHHHH
Confidence            35778889998888899988888777766666766666        7777888899999999998888877665 89999


Q ss_pred             HHHHHHHHhCCCCHHHHHH
Q 004622          402 SIFDQILKEDPMYPEALIG  420 (741)
Q Consensus       402 ~~~~~al~~~p~~~~~~~~  420 (741)
                      .+|.+.++.+|+++..|..
T Consensus       161 alflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  161 ALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHHHHHhhcCCCChHHHHH
Confidence            9999999999999877643

>PF13041 PPR_2: PPR repeat family

Probab=81.79  E-value=4.3  Score=27.80  Aligned_cols=37  Identities=5%  Similarity=0.136  Sum_probs=25.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc--CChhhHHHHHH
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICNRAF   77 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~--~~~~~~~~~a~   77 (741)
                      ..+.-+++.|++++|.++|++..+.+  |+...|.-+-.
T Consensus         8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~   46 (50)
T PF13041_consen    8 TLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN   46 (50)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            44555788888888888888888766  66655544433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=80.12  E-value=6.8  Score=38.99  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 004622          502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (741)
Q Consensus       502 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  563 (741)
                      |..+|.+|..+.|.+...++.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45667777777777777777777777777777677766666665554446666666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	741
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		9e-14
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-11
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-05
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		1e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-08
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-07
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-04
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		3e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-04
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		6e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-04
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		4e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 71/135 (52%)
Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
            EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E    
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            ++LD  +  A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + +
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 569 KALECLQQVLYIDKR 583
           +A+E  Q+ L +D R
Sbjct: 121 EAIEYYQKALELDPR 135

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++LD  N  A+  LG A    G+Y +A E + KA++LD N  EA        Q+L N
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------KQNLGN 119
Query: 567 SEK 569
           +++
Sbjct: 120 AKQ 122

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAWK  G A    G+  +AI+   KALE +PN+A   +  G   +K  D+  A+E  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++LD  N  A+   G A    G+Y+KA E + KA++LD N  +A        Q+L N
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA-------KQNLGN 119
Query: 567 SEK 569
           +++
Sbjct: 120 AKQ 122

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y+KA E + KA++LD N   AW +L   Y    + +KA+E  Q+ L
Sbjct: 11  AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 579 YIDKRFSKAYXXXXXXXXXXXXXKKAIKD 607
            +D   +KA+             +KAI+D
Sbjct: 71  ELDPNNAKAWYRRGNAYYKQGDYQKAIED 99

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 75/151 (49%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           G  +  + + + AI  + + ++++P+  E   + G+    +G   +AI+ L K +  +  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA+  +  G  NF   +  AA++ L   + L+     AY  LGL   S+GE+ KA EA+ 
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           K I +   F+ A+  +   Y+     ++A++
Sbjct: 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE  PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++L   N  A+  LG A    G+Y +A E + KA++L  N  EA        Q+L N
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA-------KQNLGN 119
Query: 567 SEK 569
           +++
Sbjct: 120 AKQ 122

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 77/194 (39%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q NP        
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G    ALG   EA     KA+E +PN A      G V     +   A+      V LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +    + A++  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 575 QQVLYIDKRFSKAY 588
           ++ + +   F  AY
Sbjct: 261 RRAIELQPHFPDAY 274

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIG 531
              ++LD  N  A   LG A    G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           NSA+  +  G   +K  D++ A+E     ++LD  N  A+  LG A    G+Y +A E +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
            KA++LD N  EA        Q+L N+++
Sbjct: 67  QKALELDPNNAEA-------KQNLGNAKQ 88

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP      K +G      G+  +A++  ++A++  P  A +   R     K  +F  A++
Sbjct: 12  NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A S+L +  EA++ ++K  E
Sbjct: 50  CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 49/105 (46%)
Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + + +  E  K  G  +  +     A+    KA+E  P +A     R     K  ++  A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           V+D    + +D     AY  +GLALSS+ ++ +A   + KA++LD
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   +  K +G      G+   A++  ++A++ +P +A +   R     K  +F  A++
Sbjct: 9   NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++LD +    Y      L ++ E+ KA+ A+  A+Q+D +  EA
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 98  LDPTLLQAYILKGCA 112
            DP  ++AYI K  A
Sbjct: 202 KDPNFVRAYIRKATA 216

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 98  LDPTLLQAYILKGCAFSALGRKEEAL 123
            DP  ++AYI K  A  A+     AL
Sbjct: 67  KDPNFVRAYIRKATAQIAVKEYASAL 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	741
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-49
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-46
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-37
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-34
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-48
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-44
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-39
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-30
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-48
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-47
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-47
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-46
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-46
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-46
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-43
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-40
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-38
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-21
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-47
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-36
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-46
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-42
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-40
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-37
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-33
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-28
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-40
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-37
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-30
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-43
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-40
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-39
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-38
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-33
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-43
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-31
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-24
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-40
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-39
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-38
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-40
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-31
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-29
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-27
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-20
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-36
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-33
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-27
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-38
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-25
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-24
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-36
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-35
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-35
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-34
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-34
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-33
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-30
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-30
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-30
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-27
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-25
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-23
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-22
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-34
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-29
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-34
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-25
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-30
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-30
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-23
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-25
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-27
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-22
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-26
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-25
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-24
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-22
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-24
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-17
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-20
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	6e-21
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-20
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-18
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-19
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-18
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-15
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	8e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-17
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-14
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-14
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-11
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-16
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	9e-16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-12
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	9e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-15
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-15
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-14
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-14
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-14
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-10
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-14
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-14
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-14
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	9e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-11
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	9e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-10
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-10
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-10
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-10
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-10
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	5e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	9e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-10
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	7e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-08
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	5e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	4e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	6e-07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-07
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	6e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	4e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  176 bits (450), Expect = 3e-49
 Identities = 48/223 (21%), Positives = 90/223 (40%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   EA+   G      G+  EAI+    AL  +P+  D             D   AV+
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
              + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
                A+   ++ + +D  F  AY   G +L       +A+  
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  172 bits (439), Expect = 1e-47
 Identities = 53/222 (23%), Positives = 83/222 (37%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           + G      G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q N
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P         G    ALG   EA     KA+E +PN A      G V     +   A+  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
               V LD     AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +  
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             + A++  ++ + +   F  AY      L   G   +A   
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  171 bits (437), Expect = 2e-47
 Identities = 45/228 (19%), Positives = 91/228 (39%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
              R   G      G+   A + + + ++  P +  A    G     Q E+  AI  F +
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A+  +P+  +A+   G           A+    +AL   PN A +      V ++    +
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A++     ++L      AY  L  AL   G   +AE+ +  A++L     ++  +L   
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            ++  N E+A+   ++ L +   F+ A+     +L   G+ ++A+   
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  171 bits (437), Expect = 2e-47
 Identities = 47/227 (20%), Positives = 90/227 (39%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++   A V  G    A+  +   L+ +P         G        LE A + + +
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  + + F+
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      + L   +   +  L       G    A + + +AI+L  +F +A+ +L   
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            ++  +  +A +C    L +    + + +    +    G  ++A++ 
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  170 bits (432), Expect = 1e-46
 Identities = 40/221 (18%), Positives = 83/221 (37%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                    +   +       +K++P+  EA    G     + +L+ AI  +  A++  P
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +     A  A G+   A+Q    AL++ P+   +  + G +         A    
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++       A++ LG   ++ GE   A     KA+ LD NFL+A+ +L    ++   
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            ++A+    + L +    +  +     + +  G    AI  
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  160 bits (407), Expect = 2e-43
 Identities = 40/213 (18%), Positives = 79/213 (37%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +G+   AI  F++ +  DP + +A I  G      R  + A++ +  A+  +P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +               G    AI    +A+E +P+  D          +      A +  
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +  ++L   +  +   L       G  ++A   + KA+++   F  A  +L    Q    
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
            ++AL   ++ + I   F+ AY   G  L  + 
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  143 bits (364), Expect = 1e-37
 Identities = 32/190 (16%), Positives = 64/190 (33%)

Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
            +          + EAA     +  +  P                     +    + A++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
             P  A+     G V  +      A+E     ++L  +    Y  L  AL + G+ + A 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597
           +A++ A+Q + +       L    + L   E+A  C  + +     F+ A+   G + + 
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 598 LGQHKKAIKD 607
            G+   AI  
Sbjct: 182 QGEIWLAIHH 191

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  135 bits (342), Expect = 1e-34
 Identities = 33/180 (18%), Positives = 71/180 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G        +  A++ + + L   P +             Q  ++ AI  +  AI+  P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +A+     A    G   EA    + AL   P  AD L+    +  +  +   AV   
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              +++  E  +A++ L   L   G+ ++A   + +AI++   F +A+ ++    +++ +
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  A++  +  L          +       L   +       KA++  P    A+  
Sbjct: 121 VQAYVSALQY-NPDLYCVR-----SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 109 KGCAFSALGRKEEALSVWEK 128
            GC F+A G    A+  +EK
Sbjct: 175 LGCVFNAQGEIWLAIHHFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + ++  A+R+        Y      N A         +  ++    ALQ +P L      
Sbjct: 87  IEHYRHALRL-KPDFIDGY-----INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G    ALGR EEA + + K
Sbjct: 141 LGNLLKALGRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           S    + AI+  + LLA++Y      N    Y +    +  I     AL+L P  +  YI
Sbjct: 52  SAHFSTLAIKQ-NPLLAEAY-----SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105

Query: 108 LKGCAFSALGRKEEALSVWEK 128
               A  A G  E A+  +  
Sbjct: 106 NLAAALVAAGDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
            I+LA    +  + +AI +       +Y     CN A    +           + AL+L 
Sbjct: 252 LIDLA----IDTYRRAIEL-QPHFPDAY-----CNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEK 128
           PT   +           G  EEA+ ++ K
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+R+     A S       N A    +    +  +R   KAL++ P    A+       
Sbjct: 296 TALRL-CPTHADSL-----NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 114 SALGRKEEALSVWEKGYEHAL 134
              G+ +EAL      Y+ A+
Sbjct: 350 QQQGKLQEAL----MHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 41  IELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +P L +AY   G  +   G+ +EA+  +  
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ +     A  +      N A  Y +  L    I    +A++L P    AY     A 
Sbjct: 228 RALSL-SPNHAVVH-----GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

Query: 114 SALGRKEEALSVWEKGYEHAL 134
              G   EA       Y  AL
Sbjct: 282 KEKGSVAEAEDC----YNTAL 298

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D     +Y      N      +  +    +    +AL L P     +    C +
Sbjct: 194 KAVTL-DPNFLDAY-----INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 114 SALGRKEEALSVWEK 128
              G  + A+  + +
Sbjct: 248 YEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KAI       A ++      N    ++        I   +KA+ LDP  L AYI  G   
Sbjct: 160 KAIET-QPNFAVAW-----SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 114 SALGRKEEALSVWEK 128
                 + A++ + +
Sbjct: 214 KEARIFDRAVAAYLR 228

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 7/55 (12%)

Query: 561 YQDLANS-------EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             +LA+        E A     Q+   +   +    L   +     +  ++    
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS 56

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  177 bits (450), Expect = 3e-48
 Identities = 44/305 (14%), Positives = 106/305 (34%), Gaps = 14/305 (4%)

Query: 317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF-KWDMLKETSNEAKRNKKFCVTRISK 375
            +        +Y +S+ +D +  +   +  K S   +D   E+  +A R  +  + + ++
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 376 SKSISVDFRL---SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
            + +     +     GI +  +     A     + ++  P    + I      A + +  
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDST 287

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
              + F +A++ + +    +  RGQ    L    +A +D  KA E +P +     +   +
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
            ++   F+      S   +   E      +    L+   ++ KA + +  AI+L+     
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407

Query: 553 AWGHL---------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            +  +               + N  +A   L++   +D R  +A      +        +
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467

Query: 604 AIKDL 608
           AI   
Sbjct: 468 AITLF 472

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  164 bits (417), Expect = 9e-44
 Identities = 30/230 (13%), Positives = 78/230 (33%), Gaps = 11/230 (4%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
             +   +        + FD+ LK D         RG      +  + A  DF +A + +P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                + +         +  +     S+A    P + ++ +    +     DF+ A++  
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395

Query: 507 SACVKLDKENKSAYTYLGLALS---------SIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
              ++L+ +    Y  +   +          ++  + +A     KA +LD    +A   L
Sbjct: 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            Q      + ++A+   ++   + +   +      +      + ++ I+ 
Sbjct: 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQ--AITFAEAAKVQQRIRS 503

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  150 bits (381), Expect = 6e-39
 Identities = 33/237 (13%), Positives = 67/237 (28%), Gaps = 13/237 (5%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF------------QRELE 432
           ++   +     K     + +D+  + D      L                      R  E
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             +    E  +       + +  G  +    + + A +D+ KA+E  P   +      ++
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
                D           +KLD  N S Y + G     +  Y +A +   KA +LD   + 
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
            +  L          +       +         +  +    +L       KA+K   
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  124 bits (313), Expect = 3e-30
 Identities = 35/250 (14%), Positives = 78/250 (31%), Gaps = 29/250 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  AI  ++  L+     P              +L+  +   T+A++  P
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKA---LEFEPNSADILHERGIVNFKFKDFNAAV 503
              +   RR  A   LG+  +A+ DLS      +F   S + + ER +            
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 504 EDLSACVKLDKENKSAYTYLGL-------------ALSSIGEYKKAEEAHLKAIQLDRNF 550
            D+        E  +                    +   I + +     + ++ + D+  
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190

Query: 551 LEAWGHLTQ------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
           +    +L +            F +     E+ L+   +   + ++ + +    G+     
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250

Query: 599 GQHKKAIKDL 608
                A +D+
Sbjct: 251 NDPLGAHEDI 260

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  107 bits (268), Expect = 2e-24
 Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 19/216 (8%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           E   Y  AL  +G      ++ + AI  +  A++        +        ++G+  + +
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVV 59

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CVKLDKENKSAYTYL--GLA 526
           +  +KALE +P+ + +L  R   N     F  A+ DLS   +  D  + S    L   L 
Sbjct: 60  EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

Query: 527 LSSIGEYKKAEEAHLKAIQLD-------------RNFLEAWGHLTQFYQDLANSEKALEC 573
             ++ + K+       A                 +            +  +   E     
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             +    DK          L       + KA +  +
Sbjct: 180 YDESNEADKELMNGL--SNLYKRSPESYDKADESFT 213

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
           N + CY  +   K V+    KAL+L P   +  + +  A   LG+  +A+        + 
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
               A ++  LE      A  +
Sbjct: 104 DFNDASIEPMLERNLNKQAMSK 125

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           + +          +  A ++ ++  K DP   +A IG    +  Q +++ AI+ F E+  
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
              +  E  +    A AA  +         + +  +P  A  + E
Sbjct: 478 LARTMEEKLQAITFAEAAKVQ---------QRIRSDPVLAKKIQE 513

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+++ DS  +  Y      +R      L+ +    +D DKA +LDP  +  YI   C  
Sbjct: 295 KALKL-DSNNSSVY-----YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348

Query: 114 SALGRKEEALSVWEK 128
               + ++  +++ +
Sbjct: 349 YRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV---------IRDCDKALQLD 99
           L+ +  AI + ++ L   Y        A    +  L                 +KA +LD
Sbjct: 392 LKQYDLAIEL-ENKLDGIY-----VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA--LHQSADLKQFLELEELLTAAKQD 156
           P   QA I            +EA++++E+  + A  + +      F E  ++    + D
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 13/83 (15%), Positives = 24/83 (28%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                +   A   +   +     +      A   +            DKAL+LD      
Sbjct: 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G     L   ++A   ++K
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDK 329

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            +++ KA   LD      Y        A    +            +A +  P   +    
Sbjct: 324 GKDFDKAKE-LDPENIFPY-----IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +     ++AL  ++ 
Sbjct: 378 FAEILTDKNDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 51  NWSKAIRILDSLLAQSYEIQDI--------CNRAFCYSQLELHKHVIRDCDKALQLDPTL 102
           +++KA R+ +  L ++ E + +         +                D  KA++L P  
Sbjct: 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR- 269

Query: 103 LQAYILKGCAFSALGRKEEALSVWEK 128
           + +YI      +      E  + ++K
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDK 295

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 15/90 (16%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
               +S+A R       +          A   +        ++  D A++L+  L   Y+
Sbjct: 357 CETLFSEAKRK-FPEAPEVP-----NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410

Query: 108 LKGCAFS---------ALGRKEEALSVWEK 128
                            +    EA ++ EK
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLEK 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  175 bits (446), Expect = 9e-48
 Identities = 31/223 (13%), Positives = 59/223 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +      A    G     L   ++ +  L
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  173 bits (441), Expect = 5e-47
 Identities = 30/223 (13%), Positives = 56/223 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +  +   A    G     L      +   
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRP 469

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  172 bits (438), Expect = 9e-47
 Identities = 31/223 (13%), Positives = 61/223 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++A +    +A    
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A    +   Q L 
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +  +   A    G     L   ++ +  L
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  172 bits (437), Expect = 1e-46
 Identities = 29/224 (12%), Positives = 59/224 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +       + + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             ++ L  L Q   +  +   A          L   ++ +  L 
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  171 bits (434), Expect = 4e-46
 Identities = 28/223 (12%), Positives = 57/223 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +  +   A          L   ++ +  L
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  171 bits (434), Expect = 4e-46
 Identities = 29/223 (13%), Positives = 57/223 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE 392

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +      A          L   ++ +  L
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  162 bits (412), Expect = 3e-43
 Identities = 33/223 (14%), Positives = 61/223 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            RG     E  +A   ++    L   P    A+      +     ++  +    +A    
Sbjct: 43  KRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +          +   A +  
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +  +   A    G     L   ++ +  L
Sbjct: 223 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  153 bits (389), Expect = 4e-40
 Identities = 30/225 (13%), Positives = 55/225 (24%), Gaps = 8/225 (3%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A         ++   ++      +A  L    + A          L 
Sbjct: 401 LCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALE 460

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK--KAIKDL 608
           +    L      L          +   + L  LG      A+K L
Sbjct: 461 SIVAQLSRPDPALAAL------TNDHLVALACLGGRPALDAVKKL 499

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  147 bits (372), Expect = 6e-38
 Identities = 31/222 (13%), Positives = 56/222 (25%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +       +     +   P
Sbjct: 10  WSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A       + AL      +  L +A    P     +          +     +  L
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  E   A         ++   +       +A  L    + A        Q L  
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            ++ L  L Q   +  +   A    G     L   ++ +  L
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 95.2 bits (237), Expect = 9e-21
 Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 4/161 (2%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK--FKDFNAAVEDLS 507
               +   ARA       A +     L+ +      + +RG V        +  A+    
Sbjct: 5   HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG-- 62

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
           A + L  E   A         ++   ++      +A  L    + A        Q L   
Sbjct: 63  APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETV 122

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           ++ L  L Q   +      A          L   +  +  L
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +A   L      +       +       LE  + ++    +A  L P  + A       
Sbjct: 368 CQAHG-LTPEQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 113 FSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
             AL   +  L V  +          A+  +   +  LE +   L+    
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 9e-08
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQDR 157
           A         AL   +  L V  +          A+  +   KQ LE ++ LL    Q  
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

Query: 158 SVTCEY 163
            +T E 
Sbjct: 406 GLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       + +     LE  + ++    +A  L P  + A    G   
Sbjct: 267 QAHG-LTPQQVVAI-----ASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+      KQ LE ++ LL  
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L    +A   L      +       +       LE  + ++    +A  L P  + A   
Sbjct: 92  LPVLCQAHG-LTPQQVVAI-----ASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 109 KGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
                 AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 199

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L      + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       +       LE  + ++    +A  L P  + A        
Sbjct: 233 QAHG-LTPQQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+  +   KQ LE ++ LL  
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           ++  I +       LE  + ++    +A  L P  + A         AL   +  L V  
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 128 K------GYEHALHQSADLKQFLE-LEELLTA 152
           +          A+      KQ LE ++ LL  
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 10/100 (10%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E+   +     A +       A E     +QLD   L          +    + +A+   
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKI-----AKRGGVTAVEAVHAW 56

Query: 575 QQVLY-----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
           +  L      +      A          L   ++ +  L 
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLC 96

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  167 bits (426), Expect = 2e-47
 Identities = 36/222 (16%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G       ++  AI  +++  +        L  R  A   + E E AIS   +A++   
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +K   ++ A +G +   + DL K +E+   S    H    +  K ++    ++  
Sbjct: 70  EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKA 128

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
            A   ++ E        G    +  ++  A +A+ + I+        + +       L +
Sbjct: 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             +A+    + +  D  F +AY  +      + ++  A++ L
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  163 bits (415), Expect = 6e-46
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 1/216 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R  A+  +G+Y +AIS  +  +++             + A        + D  + I+   
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            +     R       L  + + ++         P  A+     G   F   D+  AV+  
Sbjct: 104 KS-LTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +  +K   E+   Y+    AL+ +  + +A     KAI+ D NF+ A+         +  
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              ALE L      D   +     R +        +
Sbjct: 223 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  136 bits (345), Expect = 2e-36
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 2/196 (1%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               +     G      R+ + AI  + +A + +         R  A    GE   AI  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+ A+E                 +  +    + DL   ++  +++ + +      L+ + 
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLR 119

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
             +K  +       ++    E      + Y   ++   A++   +++      ++ Y  R
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 592 GLLLHGLGQHKKAIKD 607
              L  L    +AI D
Sbjct: 180 AAALAKLMSFPEAIAD 195

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 35/130 (26%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
            + AD     G   +K + F+ A+E  +   +L K + +       A    GEY+ A   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
              A++  R                                       Y +       +G
Sbjct: 61  LNDAVEQGREMRAD----------------------------------YKVISKSFARIG 86

Query: 600 QHKKAIKDLS 609
                + DL 
Sbjct: 87  NAYHKLGDLK 96

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +++ I+      A+ Y      NRA   ++L      I DC+KA++ DP  ++AYI 
Sbjct: 159 VKAYTEMIKR-APEDARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212

Query: 109 KGCAFSALGRKEEALSVWEKGYEH 132
           K  A  A+     AL   +     
Sbjct: 213 KATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           NRA    +   ++  I   + A++    +   Y +   +F+ +G     L   +K
Sbjct: 43  NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L +  K I      L            A   ++L   +  ++  +    ++P   +   L
Sbjct: 92  LGDLKKTIEYYQKSLT-------EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +G  +        A+  + +
Sbjct: 145 EGKEYFTKSDWPNAVKAYTE 164

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L+       + +   A+             Y       + ++   + ++  P   + Y  
Sbjct: 125 LKKAEAEAYV-NPEKAEEA-----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +  A + L    EA++   K
Sbjct: 179 RAAALAKLMSFPEAIADCNK 198

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +   + A+      +   Y        +  ++++    H + D  K ++     L  +  
Sbjct: 58  ISTLNDAVEQ-GREMRADY-----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR- 110

Query: 109 KGCAFSALGRKEEALSVWEK 128
                + L   E+ L   E 
Sbjct: 111 TADILTKLRNAEKELKKAEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + + +KAI   D    ++Y       +A     ++ +   +   D A   D  +      
Sbjct: 193 IADCNKAIEK-DPNFVRAY-----IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 109 KGCAFSALGRKE 120
           +          +
Sbjct: 247 REIDQLYYKASQ 258

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  165 bits (419), Expect = 2e-46
 Identities = 35/243 (14%), Positives = 79/243 (32%), Gaps = 14/243 (5%)

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD- 437
           ++ D              YA AI +F+++  +    P     R        + + A  D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 438 --FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
             +   + +  +    ++  G+     G+   AIQ    A++ +    D+  + G   + 
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
             +F  A++ +   ++    +   +  LG A     EY KA+ + +K ++L  N    + 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 556 HLTQFYQDLANSEK---ALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKA 604
              +         K   A    ++++ +             +A               KA
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 605 IKD 607
              
Sbjct: 241 DAA 243

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  154 bits (392), Expect = 1e-42
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 14/229 (6%)

Query: 387 RGIAQVNEGKYASAIS---IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           R +      KY  A      +   +             G     + +   AI  +  A+ 
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
            + +  + + + G      G    AIQ + K +        + +E G   +  K++  A 
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA---HLKAIQLD--------RNFLE 552
                 ++L       Y +   A ++     K   A   + K I++            +E
Sbjct: 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
           A  ++  +Y    +  KA    + +L +D    KA     + L     H
Sbjct: 223 ANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 3/96 (3%)

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL---E 572
           N          L     Y +A E   K      N    +      Y +LA  + A    E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                +   K  S  +   G +L   GQ   AI+  
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY 97

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+   D+     Y           +         I+  +K ++   T  + +   G A+
Sbjct: 99  AAVDR-DTTRLDMY-----GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152

Query: 114 SALGRKEEALSVWEK 128
                  +A S + K
Sbjct: 153 YYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
           +       F     N  +A+E   ++          Y+ R +  + L ++  A KD+ +
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
             +       +  +             +       I+    A+  D T L  Y   G  F
Sbjct: 65  SKVNA-TKAKSADF-----EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 114 SALGRKEEALSVWEK 128
              G    A+   EK
Sbjct: 119 YNKGNFPLAIQYMEK 133

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    +   +   I   +K           Y  +   +  L + + A    E  Y   
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-YFSK 66

Query: 134 L 134
           +
Sbjct: 67  V 67

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCD---KALQLDPT 101
           L    N+++AI + + L A+ Y    I   RA CY +L  +    +D +     +     
Sbjct: 13  LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72

Query: 102 LLQAYILKGCAFSALGRKEEALSVWEK 128
               +   G      G+   A+  ++ 
Sbjct: 73  KSADFEYYGKILMKKGQDSLAIQQYQA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 17/89 (19%)

Query: 51  NWSKAIRILDSLLAQSYEIQDICNRAFCYSQLEL---HKHVIRDCDKALQLDPT------ 101
           ++ K + +    +   Y       RA   +  +            +K +++         
Sbjct: 164 SFVKVLEL-KPNIYIGY-----LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 102 --LLQAYILKGCAFSALGRKEEALSVWEK 128
             L++A       ++    K +A + W+ 
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKN 246

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  163 bits (414), Expect = 6e-46
 Identities = 50/215 (23%), Positives = 84/215 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +       G Y  A   F + ++E+       I      +   ELE A++ + +A++ + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           SA  A+   G          EA     KAL     + D+ +  G V  K +    A+  L
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              V+L++ +  A    G+ L++ G   +A        + D    +A+ +    Y    N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            EKALE L + + I      A H + LL H    H
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  152 bits (387), Expect = 3e-42
 Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 3/214 (1%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  +  +      M     +GRG+      + E A   FT+AI+ N      + 
Sbjct: 5   HHHHHHSSGLVPRGSHMASMTGGQQMGRGSE---FGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
                 +++ E   A+    KALE + ++A   +  G V    + +  A +     ++  
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            EN   +  LG  L  + + K A     +A++L+ N  EA         +    ++AL  
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
              V   D   + A++  G+        +KA++ 
Sbjct: 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  129 bits (328), Expect = 4e-34
 Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 4/181 (2%)

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARA----ALGESVEAIQDLSKALEFEPNSADIL 486
           + ++      +    P         G  +       G+  +A +  +KA+E     A   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                +     +   A+      ++LD    +AY   G        YK+A++   KA++ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                + +  L      L   + AL  LQ+ + +++  ++A    G+ L   G   +A+ 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 607 D 607
            
Sbjct: 181 Q 181

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  + KA+ + DS  A +Y           Y   E++K      +KAL+        + +
Sbjct: 77  LAFYDKALEL-DSSAATAY-----YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G     L + + AL       + A+
Sbjct: 131 LGTVLVKLEQPKLAL----PYLQRAV 152

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + +    ++           C +   +    +       + DP    A+   G  +
Sbjct: 150 RAVEL-NENDTEAR-----FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203

Query: 114 SALGRKEEALSVWEK 128
           +    +E+AL + +K
Sbjct: 204 AYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           +   ++KAI   +   A  Y      N A   S +   +  +   DKAL+LD +   AY 
Sbjct: 42  AAEAFTKAIEE-NKEDAIPY-----INFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 108 LKGCAFSALGRKEEALSVWEK 128
             G  +      +EA  ++EK
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEK 116

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+R         +             +LE  K  +    +A++L+    +A    G   
Sbjct: 116 KALRA-GMENGDLF-----YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169

Query: 114 SALGRKEEALSVWEK 128
           +  G  +EALS +  
Sbjct: 170 ANEGMLDEALSQFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            +  ++      +        +    S+   ++       KA++ +      YI      
Sbjct: 10  HSSGLVPRGSHMASMTGG--QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 114 SALGRKEEALSVWEK 128
           S++   E AL+ ++K
Sbjct: 68  SSVNELERALAFYDK 82

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  ++      D   A ++      N    Y+  E  +  +   DKA+ + P  + A   
Sbjct: 179 LSQFAAVTEQ-DPGHADAF-----YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 109 KGCAFSALGR 118
           K         
Sbjct: 233 KKLLGHHHHH 242

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  167 bits (424), Expect = 1e-44
 Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 17/237 (7%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI    +     A  +  + +   P    + I      A +   +     F +A+  NP
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +  RGQ    L +   A +D  KA    P +     +   + +K   F  +    
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--------- 557
           +             T+    L+  G++  A + +  A +L+    +    +         
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

Query: 558 -------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
                       D      A++ L +   +D R  +A      L   + +  +AI+ 
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  154 bits (390), Expect = 6e-40
 Identities = 38/288 (13%), Positives = 87/288 (30%), Gaps = 7/288 (2%)

Query: 326 ESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL 385
              S  S++ +    S E   + +     +K  +    +++      +  + S++  F +
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173

Query: 386 SRGIAQVN----EGKYASAISIFDQILKEDPMYPEA--LIGRGTARAFQRELEAAISDFT 439
                +V+       Y +A ++    L+      +   L+             + +S  T
Sbjct: 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
                  +A  A    G         ++A   L +++   P   +      +     ++ 
Sbjct: 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS 292

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
               +     V L+ E    Y + G     + +YK A+E   KA  L+   +  +  L  
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
                    ++     +         +       +L   G    AIK 
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  145 bits (368), Expect = 4e-37
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        Y +A   F +    +P      I        Q +   + + F E     P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF---------- 496
           +  E      +     G+   AI+    A   E     I    G +  K           
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 497 ------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
                 + FNAA++ L+   +LD  ++ A   L      + +  +A E    +  L R  
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
            E     T  + + A  +K L     +    +     Y  +G+L
Sbjct: 496 DEKLQATT--FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  133 bits (336), Expect = 5e-33
 Identities = 43/236 (18%), Positives = 76/236 (32%), Gaps = 14/236 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        +  AI  +   ++ DP  P              +LE  I   T+A++  P
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKAL---EFEPNSADILHERGIVNFKFKDFN-AA 502
              +A  RR  A  +LG   +A+ DLS      +F+  S + + ER +     K  N   
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAW 554
            +D     ++   N S  ++ G+  S +          Y  A      A+Q   +  +  
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210

Query: 555 GHL--TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             +      +        L        + +  + A    G+          A   L
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  117 bits (296), Expect = 6e-28
 Identities = 40/241 (16%), Positives = 77/241 (31%), Gaps = 15/241 (6%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTAR-AFQRELEAAIS 436
               L R  A  + G +  A+     +           E ++ R   + A +   E    
Sbjct: 93  SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHE 488
           D     Q  PS        G   + L             A   LS AL+   ++ D  + 
Sbjct: 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 489 RGIVNFK--FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                       +++ +   +    L +    A  Y G+          A+    ++I L
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                 ++  L     D  NS++  +  Q+ + ++  +   Y+ RG +   L  +K A +
Sbjct: 273 HPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 607 D 607
           D
Sbjct: 332 D 332

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 4/116 (3%)

Query: 498 DFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
                  D++    L    +          G    +   + +A + +  AI+LD N    
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
           + +++  Y    + EK +E   + L I    SKA   R      LG    A+ DLS
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.1 bits (164), Expect = 9e-12
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435
            K+  +  + S+   Q++E K+ +AI +  +  + DP   +A IG    +    +++ AI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             F ++     +  E  +    A AA  +  + ++           +      +G++
Sbjct: 483 ELFEDSAILARTMDEKLQATTFAEAAKIQ--KRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 8/150 (5%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  AI + D      Y      N + CY      + VI    KAL++ P   +A + 
Sbjct: 45  IKYYQYAIEL-DPNEPVFY-----SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98

Query: 109 KGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVS 166
           +  A  +LG   +A+        +     A ++  LE      A K   +     E   S
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 167 NSMSSLTVSESGLNANDKMSETSENHNKSD 196
             + S T   S     D   E S  +  S+
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + +     +Y      +R   Y  L+ +K+   D  KA  L+P  +  YI   C  
Sbjct: 301 KAVDL-NPEYPPTY-----YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354

Query: 114 SALGRKEEALSVWEK 128
              G+  E+ + + +
Sbjct: 355 YKQGKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 14/83 (16%), Positives = 26/83 (31%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                N   A  +L   +            A   +  E  +   +   KA+ L+P     
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +  L   + A   ++K
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             ++ KA  + +      Y        A    +           ++     PTL +    
Sbjct: 330 KEDFQKAQSL-NPENVYPY-----IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +  G  + A+  ++ 
Sbjct: 384 FAEILTDRGDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 54  KAIRI----------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
            A R+          +  L+ ++  +    ++       E     I+   KA +LDP   
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           QA I        + + +EA+ ++E 
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                +              +++ L PT   +YI      +     +E    ++K
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 35  SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC---NRAFCYSQLELHKHVIRD 91
               + +E++ + +  N+  A  +L   L + Y   D              +++  ++  
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                 L      A    G          +A  + ++
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 8/79 (10%)

Query: 49  LRNWSKAIRI---LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
             + ++   +        A         NR   +   +     I+    A++LDP     
Sbjct: 7   EPDIAQLKGLSPSQRQAYAVQL-----KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 106 YILKGCAFSALGRKEEALS 124
           Y      + + G  E+ + 
Sbjct: 62  YSNISACYISTGDLEKVIE 80

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  161 bits (410), Expect = 4e-44
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 27/273 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ I  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
                 A  +RG      G+  EA  D  K L+  P+  +       +            
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR------------GLLLHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +                  L  
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246

Query: 598 LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLC 630
            G++  A     S  +T      + +     +C
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  155 bits (394), Expect = 6e-42
 Identities = 43/259 (16%), Positives = 91/259 (35%), Gaps = 31/259 (11%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF------------- 427
              RL RG   + +GK   A   F ++LK +P   E                        
Sbjct: 71  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130

Query: 428 --QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
               +  AAI+   + ++      E  + R +     GE  +AI DL  A + + ++ + 
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL------------GLALSSIGEY 533
            ++   + ++  D   ++ ++  C+KLD+++K  + +                L   G Y
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF----YQDLANSEKALECLQQVLYIDKRFSKAYH 589
             A   +   ++ + +  E      +     +       +A+    +VL ++     A  
Sbjct: 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310

Query: 590 LRGLLLHGLGQHKKAIKDL 608
            R         + +AI+D 
Sbjct: 311 DRAEAYLIEEMYDEAIQDY 329

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  150 bits (382), Expect = 2e-40
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
           K+  +    S+ +   +   Y +AI+  D+IL+      E    R      + E   AIS
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD------------ 484
           D   A +      EA+ +       LG+   ++ ++ + L+ + +               
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAH 540
            L E      +   +  A     + +K +         +   +    S   +  +A    
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            + +Q++ + + A     + Y      ++A++  +     ++   +           L Q
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 601 HKK 603
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  141 bits (358), Expect = 5e-37
 Identities = 37/209 (17%), Positives = 76/209 (36%), Gaps = 15/209 (7%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            E  +  G       +L  A+S F  A+  +P    A+ RR     A+G+S  A+ DL+K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG---------- 524
            +  + +      +RG +  K    + A +D    +K +   +                 
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 525 -----LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579
                L      +Y  A     K +++     E      + +       KA+  L+    
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           +    ++A++    L + LG H+ ++ ++
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEV 211

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  123 bits (310), Expect = 1e-30
 Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 15/176 (8%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E     G+   A G+  +A+     A++ +P++    + R  V        AA+ DL+  
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF--------- 560
           + L  +  +A    G  L   G+  +AE+   K ++ + +  E     +Q          
Sbjct: 64  IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123

Query: 561 ------YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
                   D A+   A+  L ++L +    ++   LR       G+ +KAI DL +
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  109 bits (275), Expect = 4e-26
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF- 427
            +   SK KS + +            G +  ++S   + LK D  +          +   
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 428 -----------QRELEAAISDFTEAIQSNPSAGE----AWKRRGQARAALGESVEAIQDL 472
                            A S +   +++ PS  E    + +R     +   + VEAI+  
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           S+ L+ EP++ + L +R       + ++ A++D  A  + ++ ++     L  A   + +
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 533 YKK 535
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100
           L     ++ A    +S++        Y ++       C+S+ E     IR C + LQ++P
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303

Query: 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
             + A   +  A+      +EA+  +E   EH
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K + L      A + 
Sbjct: 23  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAA 153
           +G      G+ +EA   ++K        +      + L +  E++ L + A
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
                +++ AI  LD +L      A+  E      RA C+ +    +  I D   A +L 
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRE-----LRAECFIKEGEPRKAISDLKAASKLK 184

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
               +A+      +  LG  E +LS         L 
Sbjct: 185 SDNTEAFYKISTLYYQLGDHELSLSE----VRECLK 216

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 39  ARIELAKLC-SLRNWSKAIRILD----------------SLLAQSYEIQDICNRAFCYSQ 81
           AR++   L        +A                     S L ++ E+Q + ++A     
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132

Query: 82  LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
              +   I   DK L++     +   L+   F   G   +A+S      + A  
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD----LKAASK 182

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           ++R  S+ +++ +     +       +RA  Y   E++   I+D + A + +    Q   
Sbjct: 291 AIRICSEVLQM-EPDNVNAL-----KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344

Query: 108 LKGCAFSALGRKEE 121
               A   L + ++
Sbjct: 345 GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 46  LCSLRNWSKAIRILDSLLA---QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102
                   KAI  L +       + E       +  Y QL  H+  + +  + L+LD   
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEA--FYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

Query: 103 LQAYILKGCAFSALGRKEEALSVWEKG-YEHALHQSADLKQFLELE 147
            + +             E A  +   G Y  A    +  +  ++ E
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT---SKYESVMKTE 264

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
           +++                  +     A+  DP    AY  +   F A+G+ + AL
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL 57

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  162 bits (411), Expect = 2e-43
 Identities = 54/273 (19%), Positives = 97/273 (35%), Gaps = 27/273 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ IQ 
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---------------LHER 489
                 A  +RG      G+  EA  D  K L+  P+  +                L  +
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL------------LHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +     +            L  
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269

Query: 598 LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLC 630
            G++  A     S  +T      + +     +C
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  153 bits (389), Expect = 2e-40
 Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 31/259 (11%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTAR 425
              RL RG   + +GK   A   F ++LK +P   E                L  +    
Sbjct: 94  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
               +  AAI+   + ++      E  + R +     GE  +AI DL  A + + ++ + 
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------------LSSIGEY 533
            ++   + ++  D   ++ ++  C+KLD+++K  + +                L   G Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF----YQDLANSEKALECLQQVLYIDKRFSKAYH 589
             A   +   ++ + +  E      +     +       +A+    +VL ++     A  
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333

Query: 590 LRGLLLHGLGQHKKAIKDL 608
            R         + +AI+D 
Sbjct: 334 DRAEAYLIEEMYDEAIQDY 352

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  150 bits (382), Expect = 2e-39
 Identities = 33/239 (13%), Positives = 77/239 (32%), Gaps = 16/239 (6%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
            S+ +     G Y +AI+  D+IL+      E    R      + E   AISD   A + 
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
                EA+ +       LG+   ++ ++ + L+ + +          V            
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266

Query: 494 -FKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
             +   +  A     + +K +         +   +    S   +  +A     + +Q++ 
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           + + A     + Y      ++A++  +     ++   +           L Q +K    
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  147 bits (374), Expect = 2e-38
 Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 26/237 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+    E  Y  +++             E  +  G       +L  A+S F  A+  +P
Sbjct: 9   SGVDLGTENLYFQSMA-----------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP 57

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ RR     A+G+S  A+ DL+K ++ + +      +RG +  K    + A +D 
Sbjct: 58  DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117

Query: 507 SACVKLDKENKSAYTYL---------------GLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              +K +                          L     G+Y  A     K +++     
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           E      + +       KA+  L+    +    ++A++    L + LG H+ ++ ++
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  141 bits (358), Expect = 2e-36
 Identities = 47/297 (15%), Positives = 100/297 (33%), Gaps = 26/297 (8%)

Query: 326 ESYSKSSISDNKSSDSTESRSKLSFKWDMLK--ETSNEAKRNKKF-----CVTRISKSKS 378
           + + K   S+   ++  E++S+L    +M +    +  A  +  +      + +I +   
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438
              + R  R    + EG+   AIS      K      EA     T      + E ++S+ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 439 TEAIQSNPSAGEAWKRRGQARAA------------LGESVEAIQDLSKALEFEPNSADIL 486
            E ++ +      +    Q +               G   +A       ++ EP+ A+  
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

Query: 487 HE----RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                       K +    A+   S  ++++ +N +A      A      Y +A + +  
Sbjct: 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLH 596
           A + + N  +    L +  + L  S+K        +  + +     KAY    L  H
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  132 bits (335), Expect = 2e-33
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M+       G     +     +++D            E     G+   A G+  +A+   
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQF 49

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
             A++ +P++    + R  V        AA+ DL+  ++L  +  +A    G  L   G+
Sbjct: 50  HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQF---------------YQDLANSEKALECLQQV 577
             +AE+   K ++ + +  E     +Q                     +   A+  L ++
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
           L +    ++   LR       G+ +KAI DL +
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 23/152 (15%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                  + K   AI +  ++L+ +P    AL  R  A   +   + AI D+  A + N 
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSK------------------ALEFEPNSADILHE 488
           +  +  +   +A+  L +S +                         AL++ P++     E
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE 420

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
           +     KF D  AA E LS     D E +  +
Sbjct: 421 KKKAEKKFIDIAAAKEVLS-----DPEMRKKF 447

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCS----------LRNWSKAIRILD 60
           Y+L     ++ E+ E +++D           ++ KL               ++ A    +
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281

Query: 61  SLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115
           S++        Y ++       C+S+ E     IR C + LQ++P  + A   +  A+  
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341

Query: 116 LGRKEEALSVWEKGYEH 132
               +EA+  +E   EH
Sbjct: 342 EEMYDEAIQDYETAQEH 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K +QL      A + 
Sbjct: 46  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAAKQDR 157
           +G      G+ +EA   ++K               + L +  E++ L + A    
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 8e-10
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALH 135
           A+      +  LG  E +LS         L 
Sbjct: 213 AFYKISTLYYQLGDHELSLSE----VRECLK 239

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 39  ARIELAK-LCSLRNWSKAIRILD----------------SLLAQSYEIQDICNRAFCYSQ 81
           AR++    L       +A                     S L +S E+Q + ++A     
Sbjct: 96  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155

Query: 82  LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
              +   I   DK L++     +   L+   F   G   +A+S      + A  
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD----LKAASK 205

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 7/142 (4%)

Query: 8   DSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY 67
            + +        I  +D+++ V    A     R E           KAI  L +      
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC--FIKEGEPRKAISDLKAASKLKN 208

Query: 68  EIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVW 126
           +  +     +  Y QL  H+  + +  + L+LD    + +             E A  + 
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268

Query: 127 EKG-YEHALHQSADLKQFLELE 147
             G Y  A    +  +  ++ E
Sbjct: 269 RDGRYTDAT---SKYESVMKTE 287

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+ ++ ++     +       +RA  Y   E++   I+D + A + +    Q       A
Sbjct: 319 SEVLQ-MEPDNVNAL-----KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372

Query: 113 FSALGRKEEA 122
              L + ++ 
Sbjct: 373 QRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 10/79 (12%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
           L +   + +++  ++  L                         +     A+  DP    A
Sbjct: 13  LGTENLYFQSMADVEKHL----------ELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62

Query: 106 YILKGCAFSALGRKEEALS 124
           Y  +   F A+G+ + AL 
Sbjct: 63  YYRRATVFLAMGKSKAALP 81

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  157 bits (398), Expect = 2e-43
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 4/224 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+   + G  A A + F Q L   P  PE     G         +AA   F   ++ +P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A   RG A    G    A  DL    + +PN         +   K  D   A E L
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-LDEKQAKEVL 167

Query: 507 SACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +   + +  +  +   L +I      ++ +        L  +  E   +L ++Y  
Sbjct: 168 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           L + + A    +  +  +      +    L L  LGQ +  + +
Sbjct: 228 LGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  138 bits (351), Expect = 5e-37
 Identities = 40/228 (17%), Positives = 70/228 (30%), Gaps = 8/228 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE---EAHLKAIQLDRNFLEAWGHLTQF 560
           +DL A  + D  +     +L LA   + E +  E   +   K+ +    +     +L   
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             +    E+          + +  S+     G     LG    A    
Sbjct: 192 S-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  121 bits (306), Expect = 7e-31
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 4/193 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI     G + +A   FD +L+ DP Y  A + RG A  +    + A  D     Q +P
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAV 503
           +          A   L E  +A + L +  E         +          +        
Sbjct: 143 NDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
            D +    L +       YLG    S+G+   A      A+  + +      +       
Sbjct: 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261

Query: 564 LANSEKALECLQQ 576
           L   +  L    Q
Sbjct: 262 LGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  101 bits (254), Expect = 4e-24
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 3/165 (1%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           + + +       +   Q    L    + +         +   A +L+ERG++        
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A  D S  + +  +    + YLG+ L+  G +  A EA    ++LD  +  A  +    
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
                  + A + L      D           L    L + +   
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 165

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 4/93 (4%)

Query: 519 AYTYLGLALSSIGEYKKA----EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               L + L    + +      E+        D    +        Y  L     A    
Sbjct: 7   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF 66

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            Q L I     + ++  G+ L   G    A + 
Sbjct: 67  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + +        +  ++  +  R   Y  L L      D  +AL + P + + +   G  
Sbjct: 29  EQILASRALTDDERAQL--LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 113 FSALGRKEEALSVWEKGYEHAL 134
            +  G  + A     + ++  L
Sbjct: 87  LTQAGNFDAAY----EAFDSVL 104

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
              LA      ++S+A+ I    + + +            +Q           D  L+LD
Sbjct: 58  LRALA----RNDFSQALAI-RPDMPEVF-----NYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           PT   A++ +G A    GR + A       Y+
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             + +    +    L+++            Y  L            A+  +      +  
Sbjct: 201 KADATDNTSL-AEHLSETN-----FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 254

Query: 109 KGCAFSALGRKEEALSVWEK 128
                S LG+ ++ L+  ++
Sbjct: 255 ALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCY----SQLELHKHVIRDCDKALQLDPTLLQ 104
             +  +A  +L     +S + Q   N    Y    S+  L + +  D      L   L +
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
                G  + +LG  + A ++++ 
Sbjct: 217 TNFYLGKYYLSLGDLDSATALFKL 240

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  149 bits (379), Expect = 4e-40
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 10/230 (4%)

Query: 387 RGIAQVNEGK-YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            G   +  G     A     +    +  Y  A I  G + A + E + A++ +  A Q  
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                     G        S  A +  S+AL   P    ++HE G+V F+  ++  A + 
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215

Query: 506 LSACVKLDKE---------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
               ++  K           +     LG     + +Y +A + H +A+ L       +  
Sbjct: 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA 275

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
           +   +  + N E A++     L + +  + +  + G  +       +A  
Sbjct: 276 IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYI 325

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  146 bits (371), Expect = 4e-39
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 10/232 (4%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSN 445
                V   K      +  +++   P  P +    G        + E A    ++A    
Sbjct: 62  HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
            + G AW   G + A   E  +A+     A +        +   G+      +   A   
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------NFLEAWGH 556
            S  + +  E+      +G+     GE+K AE+  L A++  +          +     +
Sbjct: 182 FSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           L    + L    +AL+  +Q L +  + +  Y   G +   +G  + A+   
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  144 bits (366), Expect = 2e-38
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 10/239 (4%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++D  +S          +     +   ++++DP +   L           +         
Sbjct: 21  NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           + +   PS   +W   G     +G   E A + LSKA   E          G       +
Sbjct: 81  KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
            + A+       +L K       Y+GL        K AE    +A+ +          + 
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 559 QFYQDLANSEKALECLQQVLYIDK---------RFSKAYHLRGLLLHGLGQHKKAIKDL 608
                    + A +     L   K         ++    +  G +   L ++ +A+   
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 9/162 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+          A   F Q L   P  P  +   G       E + A   F +A++   
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 447 SAG---------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
           + G               G     L +  EA+    +AL   P +A      G ++    
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           +F  AV+     + L +++  + T LG  +       +A   
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQL-ELHKHVIRDCDKALQL 98
           L  L   ++   +   L+        S+           Y  +   ++H  R   KA  L
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSW-----FAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           + T   A+I  G +F+     ++A++     Y  A 
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAA----YFTAA 152

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                ++    ++   ++ +  +    +        +L     +     K + L P+   
Sbjct: 32  HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

Query: 105 AYILKGCAFSALGRK-EEALSVWEK 128
           ++   GC +  +G K E A     K
Sbjct: 92  SWFAVGCYYLMVGHKNEHARRYLSK 116

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
              L+ +++A+      L              + +S +   ++ +     AL L      
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305

Query: 105 AYILKGCAFSALGRKEEAL 123
           +  + G          EA 
Sbjct: 306 SVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 9/75 (12%), Positives = 21/75 (28%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
               I +S+      +  + + A  +      K   +     ++ DP       +     
Sbjct: 7   SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66

Query: 114 SALGRKEEALSVWEK 128
             L +  E   +  K
Sbjct: 67  VELNKANELFYLSHK 81

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R  SKA   L+     ++           ++    H   +     A QL        + 
Sbjct: 111 RRYLSKATT-LEKTYGPAW-----IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G  +      + A    E+ +  AL
Sbjct: 165 IGLEYGLTNNSKLA----ERFFSQAL 186

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
            + +  A+  + ++  +    +      N      +L+ +   +    +AL L P     
Sbjct: 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           Y   G   S +G  E A+      +  AL
Sbjct: 273 YSAIGYIHSLMGNFENAVDY----FHTAL 297

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 10/76 (13%), Positives = 16/76 (21%), Gaps = 6/76 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
             A ++                    Y      K   R   +AL + P         G  
Sbjct: 149 FTAAQL-MKGCHLPM-----LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

Query: 113 FSALGRKEEALSVWEK 128
               G  + A   +  
Sbjct: 203 AFQNGEWKTAEKWFLD 218

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  149 bits (378), Expect = 5e-40
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 15/239 (6%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +  P   EA    G  +A   +   AI     A   
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---------------LHER 489
           +P           +      +  A+  L   L  +P    +               +   
Sbjct: 85  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                   ++      L A ++++  +   +  LG+  +    Y  A     +A++L  +
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             + W  L     +    ++AL+   + L I+  + +  +   +    + Q+  A K L
Sbjct: 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  129 bits (327), Expect = 3e-33
 Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 15/228 (6%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G      + +        MY E  +  G +      L  A   F    Q+ P   EAW+ 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G  +A   +   AI  L+ A   +P    +     + +    + NAA+  L A +    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 515 ENKSAY---------------TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           + +                         ++  EY++       A++++ N  +    L  
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            Y    N + A   L++ + +    ++ ++  G  L    + ++A+  
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA 228

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  111 bits (279), Expect = 6e-27
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 20/218 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTARAFQR 429
            +  ++  NE    +A++     L   P Y +                +       A   
Sbjct: 93  AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           E     +    A++ NP+  +     G           A  +L +A+E  P+ A + ++ 
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G           A++  +  + ++         + ++ S++ +Y  A +  ++AI +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
                G  ++       +    +  + +L +  R    
Sbjct: 273 GTTPTGEASR-----EATRSMWDFFRMLLNVMNRPDLV 305

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 4/102 (3%)

Query: 511 KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
             +  N           GL++  +    +A  A     Q      EAW  L     +   
Sbjct: 11  PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK 70

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
              A+  L     +D +    +    +          A+  L
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 112

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 13/78 (16%), Positives = 21/78 (26%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G   +    +         + E           LAN  +A    + V        +A+  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 591 RGLLLHGLGQHKKAIKDL 608
            GL      +   AI  L
Sbjct: 61  LGLTQAENEKDGLAIIAL 78

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++   + E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 31  MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 91  VHAALAVSHTNEHNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 7/55 (12%), Positives = 21/55 (38%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  F ++    ++        AL+++P   Q +   G  ++     + A +   +
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 6/55 (10%), Positives = 13/55 (23%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +L          +   Q  P   +A+   G   +   +   A+     
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+ + +   AQ +      +    Y+    +     +  +A++L P   Q +   G   
Sbjct: 163 AALEM-NPNDAQLH-----ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216

Query: 114 SALGRKEEALSVWEKGYEHAL 134
           +   R +EAL      Y  AL
Sbjct: 217 ANGNRPQEALDA----YNRAL 233

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  148 bits (375), Expect = 3e-39
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 12/236 (5%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG     I   +  + +DP   EA    G  +A     +AAI      ++ 
Sbjct: 69  FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+  +A      +        +A + L   ++  P    ++  +       +  + +  
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188

Query: 505 DLSACVKL------------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           D S    +            D  +    T LG+     GE+ +A +A   A+ +      
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            W  L     +   SE+A+E   + L I   F ++ +  G+    LG +++A+ + 
Sbjct: 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  126 bits (318), Expect = 9e-32
 Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 12/235 (5%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +S      N+   +++   +    +            G  R  + +L   I     AI  
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P   EAW+  G  +A       AI  L + LE +PN+   L    +          A E
Sbjct: 95  DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154

Query: 505 DLSACVKLDKENKSAYTYLGL----------ALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            L   +K + + K                  +       +  +E +L+A   + + ++  
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214

Query: 555 GH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
               L   +       +A++     L +       ++  G  L    + ++A++ 
Sbjct: 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  125 bits (317), Expect = 1e-31
 Identities = 38/223 (17%), Positives = 83/223 (37%), Gaps = 12/223 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI Q       +AI    + L+  P   +AL+    +       + A       I+ NP
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLS----------KALEFEPNS--ADILHERGIVNF 494
                 K +  +        ++  D S          +A     +    D+    G++  
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              +FN A++  +A + +  E+ S +  LG  L++    ++A EA+ +A+++   F+ + 
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597
            +L     +L    +A+      L + ++      +    + G
Sbjct: 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  119 bits (300), Expect = 2e-29
 Identities = 37/224 (16%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 397 YASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
             S    +D++  E + M     I        Q  + A+   +    ++           
Sbjct: 12  VESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEE 71

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  R   G+    I  +  A+  +P  A+     GI   + ++  AA+  L  C++L   
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           N  A   L ++ ++    + A EA    I+ +  +     +            K+     
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191

Query: 576 QVLYIDKRFSKAYHL------------RGLLLHGLGQHKKAIKD 607
            +  + + + +A H              G+L H  G+  +AI  
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  113 bits (284), Expect = 3e-27
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 8/190 (4%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPN-- 481
             E E A +      +        W    +R   +     ++   +    K   F     
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 482 --SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                   E G+   K  D    +  + A +  D  +  A+ +LG+  +     + A  A
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             + ++L  N L+A   L   Y + ++ + A E L+  +  + ++      +        
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 600 QHKKAIKDLS 609
           +  K+  D S
Sbjct: 182 RMSKSPVDSS 191

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 34/193 (17%), Positives = 57/193 (29%), Gaps = 38/193 (19%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSN 445
             + V+         ++ +   ++     P+   G G       E   AI  F  A+   
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P     W R G   A    S EA++  ++ALE +P                         
Sbjct: 244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR--------------------- 282

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-- 563
                        +   LG++  ++G Y++A    L A+ L R                 
Sbjct: 283 -------------SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNI 329

Query: 564 LANSEKALECLQQ 576
            A    AL  + Q
Sbjct: 330 WAALRIALSLMDQ 342

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           K     +    I  +++ + Q     +         ++ E  +  I    + L+L P  L
Sbjct: 74  KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           +A +    +++    +++A    + 
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +       I   + A+  DP   +A+   G   +    ++ A+   ++
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 10/82 (12%)

Query: 54  KAIRIL-DSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           +A     D +                +         I   + AL + P     +   G  
Sbjct: 202 EAAHQNGDMIDPDLQ-----TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256

Query: 113 FSALGRKEEALSVWEKGYEHAL 134
            +   R EEA+      Y  AL
Sbjct: 257 LANGDRSEEAVEA----YTRAL 274

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  150 bits (380), Expect = 2e-38
 Identities = 38/229 (16%), Positives = 77/229 (33%), Gaps = 7/229 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +    G+      I + ++   P      +  G       ++  A   F+++   +P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
             G AW     + A  GE  +AI   + A      +       G+ + +  +   A E L
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQ 559
            +   L + +      LG+   +  + + A      A+ L +        +   W +L  
Sbjct: 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            Y+ L   + A++ L Q L +    +  +    L+         AI  L
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  149 bits (377), Expect = 5e-38
 Identities = 48/216 (22%), Positives = 76/216 (35%), Gaps = 7/216 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI  +   K + A   F +    DP +  A IG   + A + E + AIS +T A +   
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +   G     LG  + A + L  +         +L+E G+V F   D   A+   
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498

Query: 507 SACVKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
              + L K+ +S        +  LG A   +  Y  A +A  + + L  N       +  
Sbjct: 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
            Y        A+  L + L I      A  L    L
Sbjct: 559 VYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  149 bits (377), Expect = 5e-38
 Identities = 40/261 (15%), Positives = 83/261 (31%), Gaps = 7/261 (2%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY 414
           L +TS+E +  +             S D  L +        ++   ++I  +IL+ DP  
Sbjct: 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +       +     E         + +  +P     W   G     + +  EA +  SK
Sbjct: 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +   +P                 + + A+   +   +L +     Y +LG+    +G   
Sbjct: 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKA 587
            A E    +  L +        L     + ++ + A+   Q  L +       +K ++  
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 588 YHLRGLLLHGLGQHKKAIKDL 608
           +   G     L  +  AI  L
Sbjct: 519 WANLGHAYRKLKMYDAAIDAL 539

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  144 bits (366), Expect = 1e-36
 Identities = 29/223 (13%), Positives = 70/223 (31%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
              + + +          +   +       + L+ +      +      ++  T+ ++ +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P   + +     +    GE  +     +  ++  P  A      GI        + A   
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
            S    +D +   A+     + +  GE+ +A  A+  A +L +     +  L   +  L 
Sbjct: 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N   A E LQ    + +      +  G++       + AI   
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  135 bits (342), Expect = 2e-33
 Identities = 36/258 (13%), Positives = 86/258 (33%), Gaps = 5/258 (1%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRL--SRGIAQVNEGKYASAISIFDQILKEDP 412
           L   +N  ++++K     + +   I ++  +   RG    N   +  A   + + L  D 
Sbjct: 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 413 MYPEAL--IGRGTARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
              EA   +          E +  +  +++   + + +   +       + +  + +   
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +D   ++     S+D+L  +    F    F   +   +  +++D  N   Y     +L  
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            GE  K        +         W  +  +Y  +    +A     +   +D +F  A+ 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411

Query: 590 LRGLLLHGLGQHKKAIKD 607
                    G+H +AI  
Sbjct: 412 GFAHSFAIEGEHDQAISA 429

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  114 bits (288), Expect = 7e-27
 Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 7/184 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +   EG++  AIS +    +         +  G        +  A      +     
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFE-------PNSADILHERGIVNFKFKDF 499
                    G       +   AI     AL             A      G    K K +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +AA++ L+  + L   + + +T + L          A     +++ +  N + A   L +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

Query: 560 FYQD 563
             ++
Sbjct: 593 ALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  109 bits (273), Expect = 7e-25
 Identities = 26/255 (10%), Positives = 67/255 (26%), Gaps = 19/255 (7%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----------------PEA 417
               + S   R       V    +  A+++  +                           
Sbjct: 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202

Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA--ALGESVEAIQ-DLSK 474
              RG         + A   + EA+  +    EA+ +        A  E    ++ + S 
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST 262

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
             + +      L+   +     +D     ED  + +   +++          L     + 
Sbjct: 263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
                  K +++D   L+ +        +     K       ++      +  +   G+ 
Sbjct: 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382

Query: 595 LHGLGQHKKAIKDLS 609
              + +  +A +  S
Sbjct: 383 YLCVNKISEARRYFS 397

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 44/306 (14%), Positives = 93/306 (30%), Gaps = 27/306 (8%)

Query: 311 LSSDSASLNDSN-TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC 369
           + S   + N  +   + +Y         +++++ S+        M    +N +       
Sbjct: 12  MQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLK 71

Query: 370 VTRISKSKSISVDFRLSRGIAQ--VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF 427
                 + S+S +  L R      + + +Y  A  + +++L      P            
Sbjct: 72  ERNAQNTDSLSREDYL-RLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCC 129

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
             +   A    T+    N S+             L +   A+                  
Sbjct: 130 TGDYARAKCLLTKEDLYNRSSA-CRYLAAFCLVKLYDWQGALNL---------------- 172

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
             G  N   KD   A + L     + K   S     G   +++  + +A+E + +A+ +D
Sbjct: 173 -LGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 548 RNFLEAWGHLTQFYQDLANSEKALE---CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
               EA+  L   +   A+ E  L            D  F ++ ++  L         + 
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 605 IKDLSS 610
            +D  S
Sbjct: 291 AEDYLS 296

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           L      +K   I + L+      A ++           Y  +       R   K+  +D
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTW-----LAVGIYYLCVNKISEARRYFSKSSTMD 403

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           P    A+I    +F+  G  ++A+S     Y  A 
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISA----YTTAA 434

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 14/90 (15%), Positives = 28/90 (31%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
            V +   ++        + G A      Y +AI   +Q L                   +
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQA 458
           +    AI+   E++  +P+   A     +A
Sbjct: 564 KIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 3/125 (2%)

Query: 5   KLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA 64
            L  ++       +   +    +      +  +  + +   L     +   + I   +L 
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT--LFVRSRFIDVLAITTKILE 333

Query: 65  QS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
              Y +           +      +    +  +   P     ++  G  +  + +  EA 
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 124 SVWEK 128
             + K
Sbjct: 394 RYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 54  KAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            A+ ++    +          N    Y +L+++   I   ++ L L       +      
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559

Query: 113 FSALGRKEEALSVWEK 128
           +        A++   +
Sbjct: 560 YLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           +I  A     R +SK+   +D     ++        A  ++    H   I     A +L 
Sbjct: 388 KISEA----RRYFSKSST-MDPQFGPAW-----IGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
                 Y+  G     LG    A    +  Y 
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 6/76 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           + A R+        Y           + QL            +  L           G  
Sbjct: 431 TTAARL-FQGTHLPY-----LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484

Query: 113 FSALGRKEEALSVWEK 128
                  + A++ ++ 
Sbjct: 485 AFNKSDMQTAINHFQN 500

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  144 bits (366), Expect = 5e-38
 Identities = 48/241 (19%), Positives = 91/241 (37%), Gaps = 17/241 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 68  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+LD  +        LG+  +  GEY KA +    A+ + 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307

Query: 608 L 608
            
Sbjct: 308 F 308

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  107 bits (269), Expect = 3e-25
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---------------QR 429
           ++  ++  NE     A  I    L+  P Y   +                          
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195

Query: 430 ELEAAISDFTEAIQSNPSAGEA--WKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
                   F  A++ +P++ +       G      GE  +A+   + AL   PN   + +
Sbjct: 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           + G           AV      ++L      +   LG++  ++G +++A E  L+A+ + 
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
           R      G      +                         +    L L  LGQ      
Sbjct: 316 RKSRGPRGEGGAMSE-----------------------NIWSTLRLALSMLGQSDAYGA 351

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  102 bits (257), Expect = 9e-24
 Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 26/237 (10%)

Query: 396 KYASAISI----FDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAG- 449
           ++  A S      D   K      E       A  +     +   + + +  Q       
Sbjct: 2   EFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPL 61

Query: 450 ---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    G  R   G+   A+     A++ +P   +     G    + +    A+  L
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ------- 559
             C++L  +N++A   L ++ ++    ++A E     ++    +        +       
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181

Query: 560 --------FYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIK 606
                        +   +  E     + +             G+L +  G++ KA+ 
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 31/183 (16%), Positives = 51/183 (27%), Gaps = 31/183 (16%)

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADI 485
           F+R   A  SD     +      E  KR  +A   L +  +       K  +FE  +   
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
            H                                    GL     G+   A      A+Q
Sbjct: 63  DHP------------------------------QPFEEGLRRLQEGDLPNAVLLFEAAVQ 92

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
            D   +EAW +L     +      A+  L++ L +      A     +        ++A 
Sbjct: 93  QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 152

Query: 606 KDL 608
           + L
Sbjct: 153 EIL 155

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +     +   A+ + ++ + Q  +  +         ++ E     I    + L+L P   
Sbjct: 73  RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
            A +    +F+    + +A  +   
Sbjct: 133 TALMALAVSFTNESLQRQACEILRD 157

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           K  +  +    + +             Q     + +   + A+Q DP  ++A+   G   
Sbjct: 51  KGYQFEEENPLRDHP--QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 108

Query: 114 SALGRKEEALSVWEK 128
           +   ++  A+S   +
Sbjct: 109 AENEQELLAISALRR 123

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 54  KAIRIL-DSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            A+R+   S+          C     ++    +   +     AL + P     +   G  
Sbjct: 206 AAVRLDPTSIDPDVQ-----CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260

Query: 113 FSALGRKEEALSVWEKGYEHAL 134
            +   + EEA++     Y  AL
Sbjct: 261 LANGNQSEEAVAA----YRRAL 278

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  149 bits (376), Expect = 3e-37
 Identities = 29/223 (13%), Positives = 58/223 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P     +          +     +  
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPV 655

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 656 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE 715

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +      A    G     L   ++ +  L
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 758

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  147 bits (373), Expect = 8e-37
 Identities = 32/225 (14%), Positives = 63/225 (28%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG     E  +AS  ++    L   P    A+      +     ++  +    +A   
Sbjct: 162 AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+   A       + AL      +  L +A    P+    +          +     + 
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            L     L  +   A    G    ++   ++      +A  L  + + A        Q L
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
              ++ L  L Q   +      A    G     L   ++ +  L 
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 386

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  147 bits (371), Expect = 1e-36
 Identities = 28/223 (12%), Positives = 58/223 (26%), Gaps = 1/223 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 257 PDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPV 316

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L  + + A        Q L 
Sbjct: 317 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 376

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +      A    G     L   ++ +  L
Sbjct: 377 TVQRLLPVLCQAHGLTPDQVVAIASNG-GKQALETVQRLLPVL 418

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  144 bits (363), Expect = 1e-35
 Identities = 28/224 (12%), Positives = 58/224 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             ++ L  L Q   +      A          L   ++ +  L 
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLC 657

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  141 bits (356), Expect = 9e-35
 Identities = 27/223 (12%), Positives = 56/223 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 502 SNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 561

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L  + + A        Q L 
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   + +    A          L   ++ +  L
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  139 bits (352), Expect = 3e-34
 Identities = 29/223 (13%), Positives = 58/223 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P+    +   G      +     +  
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 587

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +    A         ++   ++      +A  L    + A        Q L 
Sbjct: 588 LCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +      A    G     L   ++ +  L
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 690

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  138 bits (348), Expect = 9e-34
 Identities = 28/224 (12%), Positives = 60/224 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q      +   A+      +     ++  +    +A    
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 689

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +E   A         ++   ++      +A  L  + + A        Q L 
Sbjct: 690 LCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             ++ L  L Q   +      A          L   ++ +  L 
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLC 793

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  137 bits (345), Expect = 2e-33
 Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 1/224 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  Q         + +  Q     P    A+      +     ++  +    +     
Sbjct: 401 SNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT 459

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL    + +  L +A    P+    +                +  
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L  + + A        Q L 
Sbjct: 520 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 579

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             ++ L  L Q   + +    A          L   ++ +  L 
Sbjct: 580 TVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  128 bits (323), Expect = 1e-30
 Identities = 27/224 (12%), Positives = 55/224 (24%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             ++ L  L Q   +      A          L   ++ +  L 
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLC 827

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  128 bits (322), Expect = 1e-30
 Identities = 29/222 (13%), Positives = 58/222 (26%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +    +  +     +   P
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP 189

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A       + AL      +  L +A    P     +          +     +  L
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  +   A         ++   ++      +A  L  + + A        Q L  
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            ++ L  L Q   +      A          L   ++ +  L
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  127 bits (319), Expect = 3e-30
 Identities = 26/224 (11%), Positives = 55/224 (24%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +   L    + A        Q L 
Sbjct: 758 LCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALE 817

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             ++ L  L Q   + +    A          L   ++ +  L 
Sbjct: 818 TVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  117 bits (294), Expect = 3e-27
 Identities = 27/223 (12%), Positives = 56/223 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q          A+      +     ++  +    +A    
Sbjct: 672 SNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPV 791

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L ++ + A        Q L 
Sbjct: 792 LCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             ++ L  L Q   +      A          L   ++ +  L
Sbjct: 852 TVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVL 894

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  112 bits (281), Expect = 1e-25
 Identities = 30/214 (14%), Positives = 53/214 (24%), Gaps = 2/214 (0%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
            Y   I+   +   ED +          ARA +  L  A       +Q +        +R
Sbjct: 107 TYQHIITALPEATHEDIV--GVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKR 164

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G   A               L   P     +          +     +  L     L   
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPA 224

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
              A         ++   ++      +A  L  + + A        Q L   ++ L  L 
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284

Query: 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
           Q   +      A    G     L   ++ +  L 
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLC 318

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  105 bits (264), Expect = 2e-23
 Identities = 25/224 (11%), Positives = 56/224 (25%), Gaps = 1/224 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 706 SNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 765

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL      +  L +           +          +     +  
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L ++   A         ++   ++      +   L  + + A        Q L 
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             ++ L  L Q   +      A    G     L   ++ +  L 
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASNG-GKQALETVQRLLPVLC 928

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  101 bits (253), Expect = 3e-22
 Identities = 36/240 (15%), Positives = 65/240 (27%), Gaps = 13/240 (5%)

Query: 382 DFRLSRGIAQVNEGKYASAI-SIFDQILKEDPMYPEALIGRGTARAFQRE-------LEA 433
           D   +  +     G        I  ++      + EAL+G G   A           L  
Sbjct: 44  DASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGT 103

Query: 434 AISDFTEAIQSNPSAGEA-----WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
               +   I + P A         K+   ARA      +A +     L+ +      + +
Sbjct: 104 VAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAK 163

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           RG V        +      A + L      A         ++   ++      +A  L  
Sbjct: 164 RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 223

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             + A        Q L   ++ L  L Q   +      A          L   ++ +  L
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 93.2 bits (231), Expect = 1e-19
 Identities = 24/239 (10%), Positives = 55/239 (23%), Gaps = 2/239 (0%)

Query: 386  SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            S    +         + +  Q          A+      +     ++  +    +A    
Sbjct: 774  SNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 833

Query: 446  PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                 A       + AL      +  L +     P+    +          +     +  
Sbjct: 834  QDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV 893

Query: 506  LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
            L     L  +   A    G   + +   ++      +   L  + + A    +   Q L 
Sbjct: 894  LCQDHGLTLDQVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE 952

Query: 566  NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLT 624
              ++ L  L Q   +      A    G     L      +         +    +  L 
Sbjct: 953  TVQRLLPVLCQDHGLTPNQVVAIASNG-GKQALESIVAQLSRPDPALAALTNDHLVALA 1010

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 30  DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHV 88
             V+A A     + A    L    + + +L      +   +  I +       LE  + +
Sbjct: 190 AQVVAIASNNGGKQA----LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

Query: 89  IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQ 142
           +    +A  L P  + A         AL   +  L V  +          A+      KQ
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305

Query: 143 FLE-LEELLTAAKQ 155
            LE ++ LL    Q
Sbjct: 306 ALETVQRLLPVLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L    + A         AL   +  L V  + + 
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627

Query: 132 H------ALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                  A+      KQ LE ++ LL    Q   +T + 
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 6e-06
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 7e-06
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 49  LRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           L    + + +L      + E +  I +       LE  + ++    +A  L P  + A  
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739

Query: 108 LKGCAFSALGRKEEALSVWEKG------YEHALHQSADLKQFLE-LEELLTAAKQDRSVT 160
             G    AL   +  L V  +          A+  +   KQ LE ++ LL    QD  +T
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 161 CEYDV 165
               V
Sbjct: 800 LAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L      + + +  I +       LE  + ++    +A  L P  + 
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

Query: 105 AYILKGCAFSALGRKEEALSVWEKG------YEHALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQ 624

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK----- 128
           +       LE  + ++    +A  L P  + A    G    AL   +  L V  +     
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 129 -GYEHALHQSADLKQFLE-LEELLTAAKQ 155
                A+      KQ LE ++ LL    Q
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       +       LE  + ++    +A  L P  + A        
Sbjct: 285 QAHG-LTPDQVVAIA-----SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK 338

Query: 114 SALGRKEEALSVWEK 128
            AL   +  L V  +
Sbjct: 339 QALETVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 48  SLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY 106
           +L    + + +L         ++  I +       L   + ++    +A  L P  + A 
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534

Query: 107 ILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
              G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L P  + A    G    AL   +  L V  + + 
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 132 ------HALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
                  A+  +   +    ++ LL    Q   +T + 
Sbjct: 391 LTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 69  IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  I +       LE  + ++    +   L P  + A         AL   ++ L V  +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 129 ------GYEHALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                     A+  +   KQ L  ++ LL    Q   +T + 
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 14/84 (16%), Positives = 29/84 (34%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L P  + A         AL   +  L V  + + 
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHG 797

Query: 132 HALHQSADLKQFLELEELLTAAKQ 155
             L Q   +   +  ++ L   ++
Sbjct: 798 LTLAQVVAIASNIGGKQALETVQR 821

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  128 bits (324), Expect = 4e-34
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 18/207 (8%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA----------------LIGRGT 423
           SVD  L +  A +  G+   A+S F Q +  +    E                       
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A    R  + A   + E +Q  P+  +  +   + +   G+  +A++   K L+ E ++ 
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                 G   +   +     +E     +    + + A    GL+      Y+KA  +  K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEK 569
            I    +  EA   L +  +      +
Sbjct: 183 VILRFPST-EAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  114 bits (287), Expect = 4e-29
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 19/196 (9%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             + ++ + +A     +   A+S F + I  N    E +                     
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN----------------- 45

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
              +    S+ +  E  +   K ++++ A       ++    N              G+ 
Sbjct: 46  -VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE-KALECLQQVLYIDKRFSKAYHLRG 592
           K A   + K +QL+ + L A   L  +Y   A  E K LE   + L    +   A +  G
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164

Query: 593 LLLHGLGQHKKAIKDL 608
           L      +++KA   L
Sbjct: 165 LSKLFTTRYEKARNSL 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  100 bits (250), Expect = 3e-24
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 2/166 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
           T + K+  IS        +A      Y  A   + ++L++ P   + L      +  + +
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLSKALEFEPNSADILHER 489
            + A+  + + +Q       A    G       E   + ++   K L          +  
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           G+       +  A   L   +      ++  T L   L    E  +
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKT-LDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDIC-----------NRAFCYSQLELHKHV 88
                   +A+      +       + Y   ++              A  Y +   +   
Sbjct: 14  AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73

Query: 89  IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                + LQ  P  +             G++++AL ++EK
Sbjct: 74  YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRA-FCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           LR + K +++ ++    +           + Y   E  K  +    K L     +  A  
Sbjct: 108 LRMYEKILQL-EADNLAAN-----IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161

Query: 108 LKGCAFSALGRKEEALSVWEKGYE 131
             G +     R E+A +  +K   
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 3/110 (2%)

Query: 22  EIDELVRVDSVMASAITARIELAK-LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCY 79
           E+     VD     +     ELA      RN+ KA      LL      +  +   A   
Sbjct: 39  EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ 98

Query: 80  SQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE-EALSVWEK 128
                 K  +R  +K LQL+   L A I  G  +     +E + L    K
Sbjct: 99  VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  128 bits (325), Expect = 9e-34
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 3/221 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
               V  G +    +   +  K      +A I  G     +   E A     +A++ +PS
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS 69

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           + +A            E   A ++  KAL  +  +A +L+  G   ++ K +  A + L 
Sbjct: 70  SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

Query: 508 ACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
              +  L  E    +  LGL    + +  +A+E   K+++L+RN       +        
Sbjct: 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
               A +          + +++  L   L         A  
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  105 bits (263), Expect = 2e-25
 Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 2/183 (1%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R       +  +  +    A +A+ + G      G + +A   L KALE +P+SAD   
Sbjct: 16  PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-- 545
              +V     +   A E+    +  D  N       G  L     Y++A +  L+A Q  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
           L       + +L      +    +A E  ++ L +++           LL+   ++  A 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195

Query: 606 KDL 608
           +  
Sbjct: 196 QYY 198

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  100 bits (252), Expect = 6e-24
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 2/175 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-- 444
             +    E +   A   + + L  D      L   G     Q+  E A     EA Q   
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P     ++  G     + +  +A +   K+L    N   +  E   + +K +++  A +
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
                 +   +N  +            +   A    L+  +L    LE      +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  123 bits (311), Expect = 1e-32
 Identities = 26/169 (15%), Positives = 60/169 (35%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +GI+    G+Y+ A+ + +Q+   D    +  +  G A      ++        ++   P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +     G     + +   A+  L K  E  P + ++    G+       F+ A++  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
              + L       +  +  +   +G +++A     KA +LD        
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  116 bits (294), Expect = 3e-30
 Identities = 31/180 (17%), Positives = 70/180 (38%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
           D +       +G + A       A+    +   ++    +     G A    G      +
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
            L ++L   P++  +    G+   + + ++ AV  L    + +  N +    LG+AL ++
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G + +A ++   A+ L  N  +    +   Y+ +   E+AL   ++   +D+  S    L
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  116 bits (293), Expect = 4e-30
 Identities = 27/166 (16%), Positives = 61/166 (36%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           + ++      ++ +G + A  G   +A+  L +  + +    D+    GI   K    + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
             E L   +    +N    T LGL    + +Y  A    +K  + +         L    
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            +L   ++A++  +  L +     K +         +G+H++A+  
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +++        +             Y Q++ +   +    K  + +P         G A 
Sbjct: 67  RSLAD-APDNVKVA-----TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 114 SALGRKEEALSVWEK 128
             LGR +EA+  ++ 
Sbjct: 121 DNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 5/55 (9%), Positives = 20/55 (36%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           ++   +++   +   +   ++    D   +   +  G A+   G  +    + E+
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 7/80 (8%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +    +     D+            +    Y +           +++L   P  ++   +
Sbjct: 28  VMLLEQVYDA-DAFDVDVA-----LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G  +  + + + A+ +  K
Sbjct: 82  LGLTYVQVQKYDLAVPLLIK 101

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           K     + +                   L      I     AL L P   + +     ++
Sbjct: 101 KVAEA-NPINFNVR-----FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154

Query: 114 SALGRKEEALSVWEK 128
             +GR EEAL  ++K
Sbjct: 155 EQMGRHEEALPHFKK 169

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  124 bits (313), Expect = 2e-32
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 12/206 (5%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +  +  G         +AA++ F  A++ NP   EA     + +  LG    A+++   
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 475 ALEFEPNSADILHERGIV-----------NFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
            +   P                                A+  L    +++      +   
Sbjct: 65  LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           GL  + +GE  KAE +  +A+ L+ +  E    L + Y  +   ++AL    + L    +
Sbjct: 125 GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLS 609
                      L   G+ ++A +  +
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAA 209

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-----------RAFQRELEAAI 435
               Q+  G    A+     ++   P Y    +    A              +  LE A+
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
           S   +A + NP       +RG   A LGE  +A   L +AL  E    +I      +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLS 163

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               + A+   +  ++   ++         AL   G+ ++A  A         +
Sbjct: 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 48/177 (27%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           +Q+     +   R G    ALG    A+    +AL+  P   +                 
Sbjct: 1   MQTAE---QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----------------- 40

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
                            A  +L      +G    A E     +     +L  +  L++ Y
Sbjct: 41  -----------------ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 562 QDLANS-----------EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             L              E+AL  L+    ++ R++  +  RGL+   LG+  KA   
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS 140

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + D+   +          A  Y  +      +    KAL+  P  L   +    A 
Sbjct: 143 QALALEDT--PEIR-----SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195

Query: 114 SALGRKEEALSVWEKGYEHALH 135
              G+ EEA       + H  H
Sbjct: 196 LLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           Q+          L  +   +   ++AL+ +P   +A          LG    A     + 
Sbjct: 6   QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA----LEN 61

Query: 130 YEHAL 134
            +  +
Sbjct: 62  GKTLV 66

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A++  +    ++         A    +L L    + +    +   P  L  Y++   A+
Sbjct: 30  RALKE-NPQDPEAL-----YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146
            AL R+ E     +   E AL   + LK    +
Sbjct: 84  VALYRQAEDRERGKGYLEQAL---SVLKDAERV 113

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 17/86 (19%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV-----------IRDCDKALQLDPTL 102
             +          Y        +  Y  L                 +     A +++P  
Sbjct: 64  TLVAR-TPRYLGGY-----MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

Query: 103 LQAYILKGCAFSALGRKEEALSVWEK 128
              ++ +G  ++ LG +++A +  ++
Sbjct: 118 APLHLQRGLVYALLGERDKAEASLKQ 143

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  128 bits (324), Expect = 7e-32
 Identities = 39/234 (16%), Positives = 85/234 (36%), Gaps = 20/234 (8%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSNPSAGEAW 452
           + +    +   +++L    +  +AL+ +G A          A    ++A++  P   EAW
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVN--FKFKDFNAAVE 504
            + G+     G+   A    S AL    N         +L +    +     +    +V 
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 505 DLSACVKLDKENKSAYTYLGLALSS--------IGEYKKAEEAHLKAIQLDR---NFLEA 553
                V++D  +  ++  LG A  S            ++A  A+ +A ++DR   +  + 
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             +    ++   +  +ALE   Q   +D  + +       LL  L +    ++ 
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  109 bits (273), Expect = 2e-25
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 22/207 (10%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNS 482
            +  Q E+E  +    E + S     +A   +G+A     + S EA   LSKA++ EP  
Sbjct: 77  QQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL- 541
            +  ++ G V +K  D  +A    S  +   K NK +   L + L  +      E +   
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 542 --------KAIQLDRNFLEAW-----GHLTQFY---QDLANSEKALECLQQVLYIDKR-- 583
                    A+Q+D     +W      +L+ ++   Q+   S++AL    Q   +D++  
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 584 -FSKAYHLRGLLLHGLGQHKKAIKDLS 609
                +  R  L      + +A++  S
Sbjct: 256 SNPDLHLNRATLHKYEESYGEALEGFS 282

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 87.0 bits (215), Expect = 4e-18
 Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 55/211 (26%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEAL---------IGRGTARAFQRELEAAISD 437
            G     +G   SA + F   L        +L         +   +     R +  ++  
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 438 FTEAIQSNPSAGEAWKRRGQARAA-----------LGESVEAIQDLSKALEFEPNSADIL 486
              A+Q +   G +W   G A  +             +++ A     K      ++ D  
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD-- 259

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                                            +            Y +A E   +A  L
Sbjct: 260 --------------------------------LHLNRATLHKYEESYGEALEGFSQAAAL 287

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQV 577
           D  + E      Q  + L+     LE   + 
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 85.8 bits (212), Expect = 8e-18
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 22/219 (10%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           Q +    M  +            + L   +  F ++     S  +A +++   +    E 
Sbjct: 28  QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ---EEM 84

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLG 524
            + +Q + + L      A  L  +G       D++  A   LS  VKL+ E   A+  LG
Sbjct: 85  EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG 144

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---------NSEKALECLQ 575
                 G+   A      A+   +N   +  +L+   + L          +   ++   +
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 576 QVLYIDKRFSKAYHLRGLLL--------HGLGQHKKAIK 606
             + +D    +++++ G                 ++A+ 
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 80.8 bits (199), Expect = 4e-16
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 6/168 (3%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFK 497
              Q             +A+  L +    +  L    +  FE +S +    +       +
Sbjct: 25  TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD--VQE 82

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY-KKAEEAHLKAIQLDRNFLEAWGH 556
           +    ++ +   +   +    A    G AL+   +Y  +AE    KA++L+   +EAW  
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           L + Y    +   A  C    L   K    +     ++L  L      
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGD 189

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 2/117 (1%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
           ++ +  S + D  L+R      E  Y  A+  F Q    DP +PE          F   L
Sbjct: 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +    +       +     R            ++       LE +P     L  
Sbjct: 309 TSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKP--LSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            NRA  +   E +   +    +A  LDP   +    +      L R    L    K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 54  KAIRILDSLLAQSYEIQDIC-NRAFCYSQL-ELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           K ++ ++ +L  +         +    +   +          KA++L+P L++A+   G 
Sbjct: 86  KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145

Query: 112 AFSALGRKEEALSVWEK 128
            +   G    A + +  
Sbjct: 146 VYWKKGDVTSAHTCFSG 162

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  110 bits (277), Expect = 1e-27
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 37/228 (16%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             + +    +  +    Y  A +  +  LK DP    A + R     + +  + A   F 
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 440 EAIQSNPSAGEAWKRRGQA-RAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKF 496
           +A+   P + E     G      L    E++    KAL     P                
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI------------ 114

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
                                 A    G+  +  G++  AE    +++     F  A+  
Sbjct: 115 ----------------------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           L +          A    ++     +       L G  +     + +A
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 94.3 bits (235), Expect = 6e-22
 Identities = 21/169 (12%), Positives = 44/169 (26%), Gaps = 3/169 (1%)

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           +          +         +  +A   +  AL+ +P +      R  +    K  + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQ 559
            E     + +  ++       G  L   +    ++     KA+          A  +   
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                     A   L++ L    +F  A+          GQ   A    
Sbjct: 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF 170

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A  Y + + ++      + AL+ DP    A++++   +  L   ++A    ++ +  A
Sbjct: 13  QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA----QESFRQA 68

Query: 134 L 134
           L
Sbjct: 69  L 69

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  112 bits (282), Expect = 1e-26
 Identities = 41/262 (15%), Positives = 75/262 (28%), Gaps = 30/262 (11%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QREL 431
           + +S  +D        +    +   A   F++ L++ P  PE   G   A          
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILH 487
           + AI    +AI+ NP               +     E  E  + + +ALE  P   D+L 
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--------------- 532
                  +  + + A+E L   ++    N   +  +G    +                  
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

Query: 533 ----YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA- 587
                  A     KA + + N       L   +      E+A    Q+    +       
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 588 ---YHLRGLLLHGLGQHKKAIK 606
                     L+ +    KAI 
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIH 393

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  106 bits (266), Expect = 2e-24
 Identities = 37/297 (12%), Positives = 92/297 (30%), Gaps = 26/297 (8%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           F W++++  ++      K       +++             +  +G+  +A+    +  +
Sbjct: 20  FTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEE 79

Query: 410 ---------EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAW 452
                     +                   L        +               + E  
Sbjct: 80  LIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139

Query: 453 KRRGQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN---AAVEDLS 507
              G  R   G +    A     KALE +P + +      I +++  ++     A++ L 
Sbjct: 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

Query: 508 ACVKLDKENKSAYTYLGLALSSI----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             ++L+ +N+     L L L  +     E  + E+   +A++      +      +FY+ 
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLI 620
               +KA+E L++ L      +  +   G            +++     +  +  LI
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELI 316

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 96.5 bits (240), Expect = 4e-21
 Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 33/237 (13%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
              +      + ++ L++ P   + L         + E + AI    +A++  P+     
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 453 KRRGQA-------------------RAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
            + G                     R  L     A+  L KA E   N   +      ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344

Query: 494 FKFKDFNAAVEDLSACVKLDKENKSA----YTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                +  A          +    +       Y    L  +    KA    ++ +++++ 
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
             E    +    Q +A  +  L         +   S+A H+   L     + ++A +
Sbjct: 405 SRE-KEKMKDKLQKIA--KMRLS-------KNGADSEALHVLAFLQELNEKMQQADE 451

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 84.2 bits (208), Expect = 3e-17
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 33/228 (14%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-------------------RAFQ 428
                 + +   AI +  + L+  P         G                     R   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD--IL 486
             +  A++   +A ++N +            A   +  EA     K    E       +L
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 487 HER--GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
           H R      ++ K  + A+      VK++++++     +   L  I +           +
Sbjct: 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-KMKDKLQKIAK---------MRL 423

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
             +    EA   L    +     ++A E  ++ L        A    G
Sbjct: 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  109 bits (272), Expect = 9e-25
 Identities = 32/186 (17%), Positives = 75/186 (40%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
            P + ++L      +  Q  +E A+  + +A++  P    A           G+  EA+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
              +A+   P  AD     G    + +D   A++  +  ++++     A++ L       
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G   +A  ++  A++L  +F +A+ +L    Q + +     E +++++ I     +   L
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 591 RGLLLH 596
             +  H
Sbjct: 185 PSVHPH 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  107 bits (269), Expect = 2e-24
 Identities = 46/322 (14%), Positives = 103/322 (31%), Gaps = 13/322 (4%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
               +  +G    A+ ++ + L+  P +  A     +    Q +L+ A+  + EAI+ +P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +  +A+   G     + +   A+Q  ++A++  P  AD       ++    +   A+   
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG------HLTQF 560
              +KL  +   AY  L   L  + ++   +E   K + +  + LE         H +  
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLI 620
           Y       KA+      L +DK                    +      S      P   
Sbjct: 195 YPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH 254

Query: 621 WNLTRWRNLCFNAWPFIRRRL-------LCTRLLKSTVSFAGLTLMEILIPSSRNIGAKD 673
              +       + +      L          +++     F  L+ +     ++  I    
Sbjct: 255 LMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDG 314

Query: 674 CIPRMYVKRFTDSLPCVILSKR 695
               + +  +T      + + R
Sbjct: 315 IHILVNMNGYTKGARNELFALR 336

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  102 bits (255), Expect = 1e-22
 Identities = 32/165 (19%), Positives = 64/165 (38%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           S P+  ++       +   G   EA++   KALE  P  A        V  +      A+
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
                 +++      AY+ +G  L  + + + A + + +AIQ++  F +A  +L   ++D
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             N  +A+   +  L +   F  AY      L  +       + +
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L ++ +AIR +    A +Y      N      +++  +  ++   +A+Q++P    A+  
Sbjct: 63  LMHYKEAIR-ISPTFADAY-----SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 109 KGCAFSALGRKEEALSVWEKGYE-------------HALHQSADLKQFLELEELLTAAKQ 155
                   G   EA++ +    +             H L    D   + E  + L +   
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176

Query: 156 D 156
           D
Sbjct: 177 D 177

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 8e-04
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 19  KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSAD-LKQFLELEELLTAAKQ 155
           AY   G     +   + AL  + +       +  A    A   K    + E + + + 
Sbjct: 79  AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  101 bits (253), Expect = 2e-24
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 35/196 (17%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVED 505
               A+ +RG       +   AI+DL +AL     N        G+   +FK F      
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL---QFKLFACE--- 122

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                            +    +   E+KKAEE    A  +                  +
Sbjct: 123 -------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHS 157

Query: 566 NSEKALECLQQVLYID 581
             +KA+EC+ +    +
Sbjct: 158 KIDKAMECVWKQKLYE 173

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 82.1 bits (203), Expect = 7e-18
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G   A   +   A+   S     +   + I    G +    K+   A +  +  +  DK
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY   G+      +Y  A +   +A+   R      G+    Y+ L    K   C 
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQLIDYKILGLQFKLFAC- 121

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                      +  +    +     + KKA + L+
Sbjct: 122 -----------EVLYNIAFMYAKKEEWKKAEEQLA 145

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           +    G+  +   ++K A +A                ++   Y  L N  +A +   + +
Sbjct: 8   SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSI 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             DK  + AY  RG+L +   ++  AIKDL 
Sbjct: 65  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
               ++W  A+    ++      I    N    Y+ L+      +   +++  D  L  A
Sbjct: 16  AADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +    + + A+   ++
Sbjct: 74  YFQRGMLYYQTEKYDLAIKDLKE 96

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 38/150 (25%)

Query: 376 SKSISVDFRLS-----RGIAQVNEGKYASAISIFDQILKEDP----------------MY 414
           ++SI+ D  L+     RG+      KY  AI    + L +                    
Sbjct: 61  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            E L       A + E + A      A                      +  +A++ + K
Sbjct: 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWK 168

Query: 475 ALEFEPNSADI-----LHERGIVNFKFKDF 499
              +EP    +      +ER +     KD+
Sbjct: 169 QKLYEPVVIPVGRLFRPNERQVAQLAKKDY 198

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 22/92 (23%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKAL-QLDPTLLQAYIL--- 108
           +++I   D  LA +Y       R   Y Q E +   I+D  +AL QL    L  Y +   
Sbjct: 61  TRSINR-DKHLAVAY-----FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 109 ------------KGCAFSALGRKEEALSVWEK 128
                           ++     ++A      
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 95.0 bits (237), Expect = 3e-23
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q+    + +A+  + + ++ +P        R  A +       A+ D   AI  +P
Sbjct: 18  EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +  +A+ R G A ++L + VEA+    KALE +P++        I   K ++
Sbjct: 78  AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
              + + +  E  K  G  +  +     A+    KA+E  P +A     R     K  ++
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             AV+D    + +D     AY  +GLALSS+ ++ +A   + KA++LD +          
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY------ 116

Query: 560 FYQDLANSEKALE 572
              +L  +E  L 
Sbjct: 117 -KSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 30/124 (24%), Positives = 53/124 (42%)

Query: 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468
           +ED    E L   G  +      EAA+  + +AI+ NP+    +  R  A + LG    A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528
           +QD  +A+  +P  +      G+          AV      ++LD +N++  + L +A  
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 529 SIGE 532
            + E
Sbjct: 126 KLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 26/124 (20%), Positives = 49/124 (39%)

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
           E +   A+ L   G    K ++F AAV      ++L+  N   +     A S +G Y  A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596
            +   +AI +D  + +A+G +      L    +A+   ++ L +D           +   
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 597 GLGQ 600
            L +
Sbjct: 126 KLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            KAI  L+   A  +     CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A
Sbjct: 36  GKAIE-LNPANAVYF-----CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89

Query: 113 FSALGRKEEALSVWEKGYEH 132
            S+L +  EA++ ++K  E 
Sbjct: 90  LSSLNKHVEAVAYYKKALEL 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 353 DMLKETSNEAKRNKKFCVTRISK-SKSISVD-----FRLSRGIAQVNEGKYASAISIFDQ 406
           + LK   NE  + + F    +    K+I ++     +  +R  A    G YA A+   ++
Sbjct: 13  ERLKTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 407 ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
            +  DP Y +A    G A +   +   A++ + +A++ +P           A   L E+
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 90.9 bits (227), Expect = 7e-22
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+                      
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------------------- 104

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                       A+  LG A    G+Y +A E + KA++LD
Sbjct: 105 ------------AWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 89.0 bits (222), Expect = 4e-21
 Identities = 45/132 (34%), Positives = 70/132 (53%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E     
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           ++LD  +  A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121

Query: 570 ALECLQQVLYID 581
           A+E  Q+ L +D
Sbjct: 122 AIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.4 bits (101), Expect = 7e-05
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+  
Sbjct: 55  IEYYQKALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G A+   G  +EA+  ++K
Sbjct: 109 LGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 26  KALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 80  YKQGDYDEAIEYYQK 94

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 96.5 bits (240), Expect = 6e-21
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 2/177 (1%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +    +     A++  P    AW     A   +G++      + + L   P   + +   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G V +  +    A   L        E+     +LG AL   G+ + A  A+ +A QL   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--GQHKKA 604
                  L  + + L +         QV     +   A      L       +    
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 24/170 (14%), Positives = 44/170 (25%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
                 +      ++  P    A +    A     +  A        +  +P   EA  R
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G+ R       EA   L +A +  P    I    G          AA    +   +L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           E       L      + +++  +    +        + A        +D 
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA 172

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 86.4 bits (214), Expect = 8e-18
 Identities = 16/142 (11%), Positives = 31/142 (21%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
            +    +  L  A+   P                 D  A    +   + L   +  A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    +   + +A     +A             L    +D   +E A     +   +  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
                          L   +  
Sbjct: 123 EEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 23/111 (20%), Positives = 35/111 (31%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           D    +  L A V+   ++  A+  L  A   +G+    E A  + + L     EA   L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            +         +A   LQQ               G  L   GQ + A    
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 24/143 (16%), Positives = 43/143 (30%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
               L    A++  G   +      + L   P +PEA+   G  R  Q+    A     +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A  + P         G A    G++  A    ++A +  P    I  +      +  D+ 
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

Query: 501 AAVEDLSACVKLDKENKSAYTYL 523
           A     +       +   A    
Sbjct: 143 ALDVLSAQVRAAVAQGVGAVEPF 165

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 11/78 (14%), Positives = 25/78 (32%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +  +       A++       AW  L      + ++      +Q+ L +     +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 591 RGLLLHGLGQHKKAIKDL 608
            G +     +H +A   L
Sbjct: 63  LGRVRWTQQRHAEAAVLL 80

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 8/114 (7%)

Query: 39  ARIELAK-LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
           A + LA     + + +     +   LA      + +          + H        +A 
Sbjct: 25  AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFL 144
              P      +  G A    G+ E A + + +         +   Q  + ++ L
Sbjct: 85  DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 94.8 bits (235), Expect = 6e-21
 Identities = 36/215 (16%), Positives = 77/215 (35%), Gaps = 8/215 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSN 445
                  + +   A  +    ++ +         R    ++ Q++L   ++  T  I+  
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P   + W  R      L +  + ++ ++  L  +  +      R  V  +FK ++  ++ 
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAE------EAHLKAIQLDRNFLEAWGHLTQ 559
           +   +K D  N S +      +S+   Y          +  L+ I+L  +   AW +L  
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
             QD     K    L Q+L +    S  Y +  L+
Sbjct: 283 ILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLV 316

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 93.2 bits (231), Expect = 2e-20
 Identities = 30/207 (14%), Positives = 75/207 (36%), Gaps = 9/207 (4%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W         T  Y D A  E+ ++   +++ +   
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272

Query: 584 FSKAYHLRGLLLH--GLGQHKKAIKDL 608
              A++    +L   GL ++   +  L
Sbjct: 273 NESAWNYLKGILQDRGLSKYPNLLNQL 299

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 85.9 bits (212), Expect = 4e-18
 Identities = 23/165 (13%), Positives = 58/165 (35%), Gaps = 1/165 (0%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
             Q+    +  L+ + Q+L  D R +  ++ R  ++     +   
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 19/178 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA------RAFQRELEAAISDFTE 440
           R         + + +   DQ+LKED         R            +  LE  +    E
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------ADILHE--R 489
            I+  P    AW          G S +    L++ L+ +P+           DI  +   
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLS-KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324

Query: 490 GIVNFKFKDFNAAVEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
              + K    N A+E       + D   K  + Y+G +L S    +     +++  + 
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQEEF 382

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS-EK 569
               + +  Y Y    L      ++A +    AI+L+      W       + L     +
Sbjct: 91  IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE 150

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
            +  +  ++    +  + +H R +L+  L    + ++ ++
Sbjct: 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 190

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 84.6 bits (209), Expect = 2e-19
 Identities = 19/142 (13%), Positives = 41/142 (28%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G        ++   E   ++ + L+      ++   +  A     A   LD  +   +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    ++G+Y  A  ++     +D        H  +         +A   L     +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
              +   L   +   L   K  
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 81.9 bits (202), Expect = 1e-18
 Identities = 20/145 (13%), Positives = 33/145 (22%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G   S       + +      E L      +      E A   F      +      +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G  R A+G+   AI   S     +               +  +   A   L    +L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEA 539
                        S +   K  +E 
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 71.9 bits (176), Expect = 5e-15
 Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            L +         + +    E        +   G   +A          +   +      
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G        ++ A+   S    +D        +    L   GE  +AE     A +L  N
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQ 576
                    +F +        LE ++ 
Sbjct: 122 -------XPEFXELSTRVSSMLEAIKL 141

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 20/105 (19%), Positives = 30/105 (28%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    Q   G Y  A  +F  +   D       +G G  R    + + AI  ++     +
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
                      +     GE  EA   L  A E   N  +      
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 14/111 (12%), Positives = 29/111 (26%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
              +    ++   ++  +       L       G Y+ A         LD      +  L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
               Q +   + A+        +D    +        L   G+  +A   L
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 1/118 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 +  A  +  +L     Y+ +       C   +  +   I        +D    +
Sbjct: 31  QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCE 162
                       G   EA S      E   +     +    +  +L A K  + +  E
Sbjct: 91  FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 15/79 (18%), Positives = 24/79 (30%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G             ++  + LE    L          E A    Q +  +D   S+ +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 591 RGLLLHGLGQHKKAIKDLS 609
            G     +GQ+  AI   S
Sbjct: 61  LGACRQAMGQYDLAIHSYS 79

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              F L  G  +   G+Y  AI  +      D   P              EL  A S   
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
            A +   +  E  +   +  + L    EAI+ L K ++ E
Sbjct: 114 LAQELIANXPEFXELSTRVSSML----EAIK-LKKEMKHE 148

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+       ++ + L+  G   ++   ++ A +   A   LD  +   +  LG    S+G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
            Y++A +++     +D N      H  + +  L + + A         +         L 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 592 ---GLLLHGLGQHK 602
              G +L  +   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 80.6 bits (199), Expect = 4e-18
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 3/134 (2%)

Query: 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
              +        E L   G  +    + + A   F      +      +   G  R +LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY 520
              +A+Q  S     + N           + +  D + A     +   L       ++  
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 521 TYLGLALSSIGEYK 534
              G  L ++   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 77.9 bits (192), Expect = 4e-17
 Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 2/105 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q   GK+  A  IF  +   D       +G G  R      E A+  ++     + 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD--ILHER 489
           +         +    LG+   A      A            L  R
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 77.5 bits (191), Expect = 5e-17
 Identities = 14/112 (12%), Positives = 27/112 (24%)

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
                  +    E     G  +   G+  +A +        +   A      G       
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  A++  S    +D        +       +G+   AE     A  L   
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 17/99 (17%), Positives = 28/99 (28%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++       LG      G++  A++       LD      +  L    Q L   E+
Sbjct: 11  RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           AL+       +D    +           LG    A    
Sbjct: 71  ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGF 109

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 W  A +I  +L     Y+ +       C   L L++  ++       +D    +
Sbjct: 28  QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
                      LG  + A      G+  A   +A       L     A  +
Sbjct: 88  FPFHAAECHLQLGDLDGAE----SGFYSARALAAAQPAHEALAARAGAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              + L  G  + + G Y  A+  +      D   P              +L+ A S F 
Sbjct: 51  DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 440 EAIQ---SNPSAGEAWKRRGQARAALGESVE 467
            A     + P+      R G    A+    +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 12/68 (17%), Positives = 25/68 (36%)

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
               L  + LE    L          + A +  Q +  +D   ++ +   G     LG +
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 602 KKAIKDLS 609
           ++A++  S
Sbjct: 69  EQALQSYS 76

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 82.1 bits (204), Expect = 5e-19
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ--S 444
            G+ Q + G Y  +I +F++ ++ DP   +  + +G A       E A+  +   I    
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +    + W  +  A   +       +      + E +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 78.6 bits (195), Expect = 8e-18
 Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 32/140 (22%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
               PE     G  +        +I  F +AIQ +P   + W  +G+A   L    EA+ 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
             +  +    +                                  NK  +     AL  I
Sbjct: 62  CYNYVINVIEDE--------------------------------YNKDVWAAKADALRYI 89

Query: 531 GEYKKAEEAHLKAIQLDRNF 550
              +   E      +L+ + 
Sbjct: 90  EGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 73.3 bits (181), Expect = 7e-16
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           +  +N   Y   G+     G Y ++ +   KAIQLD    + W    +   +L   E+A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 572 ECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           +C   V+ +  D+     +  +   L  +   +   + 
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 65.2 bits (160), Expect = 4e-13
 Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             + +  +  G++ +   ++  +++     ++LD E    +   G AL ++  Y++A + 
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 540 HLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           +   I +  D    + W       + +   E   E  +    ++
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQA 105
           S+  + KAI++ D   ++ +       +      LE ++  +   +  + +  D      
Sbjct: 25  SIDLFEKAIQL-DPEESKYW-----LMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           +  K  A   +  KE       +  E   
Sbjct: 79  WAAKADALRYIEGKEVEA----EIAEARA 103

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                       +   I   +KA+QLDP   + +++KG A   L R EEA+  +  
Sbjct: 10  YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 80.2 bits (198), Expect = 3e-18
 Identities = 17/101 (16%), Positives = 34/101 (33%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +++P   EA    G  +A   +   AI     A   
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           +P           +      +  A+  L   L  +P    +
Sbjct: 81  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 477 EFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
            FE N      +   E G+   K  +   A     A  + + E + A+  LGL  +   +
Sbjct: 7   PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK 66

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
              A  A   A  LD   +     L   + +  N+  AL  L+  L    ++ 
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 443 QSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
            +NP    E     G +   L    EA        + EP   +     G+   + +    
Sbjct: 10  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL 69

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A+  L+    LD ++ + +  L ++ ++      A  +    +     +
Sbjct: 70  AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 68.2 bits (167), Expect = 5e-14
 Identities = 24/101 (23%), Positives = 37/101 (36%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           MY E  +  G +      L  A   F    Q  P   EAW+  G  +A   +   AI  L
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + A   +P    +     + +    + NAA+  L A +   
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 65.2 bits (159), Expect = 6e-13
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 1/95 (1%)

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             +++     GL++  +    +A  A     Q +    EAW  L     +      A+  
Sbjct: 15  MYHENPME-EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           L     +D +    +    +          A+  L
Sbjct: 74  LNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++  +  E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 27  MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 87  VHAALAVSHTNEHNANAALASLRA 110

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 79.7 bits (198), Expect = 5e-18
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 34/151 (22%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+   
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KALE +PN+A+                                  A+  LG A    G+Y
Sbjct: 68  KALELDPNNAE----------------------------------AWYNLGNAYYKQGDY 93

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            +A E + KA++LD N  EA  +L    Q  
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 79.0 bits (196), Expect = 1e-17
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 34/150 (22%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
           A+E  Q+ L +D   ++A    G      G
Sbjct: 96  AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 35/106 (33%), Positives = 52/106 (49%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
           +  EAW   G A    G+  EAI+   KALE +PN+A+     G  
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 73.6 bits (182), Expect = 6e-16
 Identities = 28/89 (31%), Positives = 49/89 (55%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++A+E  Q+ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            +D   ++A++  G   +  G + +AI+ 
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 34  KALEL-DPNNAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 88  YKQGDYDEAIEYYQK 102

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA     + Y+ A
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA----IEYYQKA 69

Query: 134 L 134
           L
Sbjct: 70  L 70

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 78.3 bits (193), Expect = 3e-17
 Identities = 19/122 (15%), Positives = 37/122 (30%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516
               A+ +++ +   L        +  D ++      +       A          D  N
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
                 L        ++++A + +  A  L +N      H  Q    L    KA EC + 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 577 VL 578
           V+
Sbjct: 130 VI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 74.1 bits (182), Expect = 9e-16
 Identities = 13/98 (13%), Positives = 31/98 (31%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S      N+G+   A   F  +   D    + ++G       + + + A   +  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            +        GQ +  L   ++A +     ++   +  
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.4 bits (175), Expect = 8e-15
 Identities = 12/112 (10%), Positives = 26/112 (23%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
            I        + +         +  +E A   F      +    +             + 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
            +A    + A     N    +   G    + K    A E     ++   + K
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 15/114 (13%), Positives = 28/114 (24%)

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              D   +   L     +  +             + G  ++AE         D   ++  
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             L   YQ     ++A +       + K         G     L    KA +  
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 14/110 (12%), Positives = 30/110 (27%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +         +            G   EA         ++  + D +     +    + F
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             A +  +    L K + +   + G     +    KA+E     IQ   +
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 5/110 (4%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +     +A      L     Y +  I   A  Y   E  +        A  L      
Sbjct: 46  FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK 154
                G     L    +A     + +E  +  S D K  ++ +  L A +
Sbjct: 106 PVFHTGQCQLRLKAPLKAK----ECFELVIQHSNDEKLKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +VD+ +        + ++  A  ++             +   G  +   +    A   F 
Sbjct: 69  NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128

Query: 440 EAIQSNPSAGEAWKRRGQA 458
             IQ +    E  K + Q+
Sbjct: 129 LVIQHSN--DEKLKIKAQS 145

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 21/102 (20%), Positives = 43/102 (42%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G Y  A+  + + +K +P   +    R        E + A+ D  E IQ  P
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
           +  + + R+  A  A+ +  +A+    KAL+ + +  +    
Sbjct: 82  TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 77.3 bits (191), Expect = 5e-17
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
                    NP      K +G      G+  +A++  ++A++  P  A +   R     K
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
             +F  A++D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 63  LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 70.7 bits (174), Expect = 8e-15
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++AI+  +   A+ Y      NRA CY++L   +  ++DC++ +QL+PT ++ Y  K  A
Sbjct: 40  TEAIK-RNPKDAKLY-----SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93

Query: 113 FSALGRKEEALSVWEKGYEH 132
             A+    +A+ V++K  + 
Sbjct: 94  LEAMKDYTKAMDVYQKALDL 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 19/109 (17%), Positives = 50/109 (45%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
                  P+ A ++  +G   F+  D+  A++  +  +K + ++   Y+      + + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           ++ A +   + IQL+  F++ +       + + +  KA++  Q+ L +D
Sbjct: 66  FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 23/119 (19%), Positives = 43/119 (36%)

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                 +P     +  +G     + +   A+  +TEAI+ NP   + +  R      L E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
              A++D  + ++ EP        +       KD+  A++     + LD   K A    
Sbjct: 66  FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 15/115 (13%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 353 DMLKETSNEAKRNKKFCVTRISK-SKSISVD-----FRLSRGIAQVNEGKYASAISIFDQ 406
            M+K   NE  +   +    +   +++I  +        +R        ++  A+   ++
Sbjct: 17  LMVKNKGNECFQKGDY-PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 407 ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461
            ++ +P + +    +  A    ++   A+  + +A+  + S  EA     +   A
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 78.2 bits (193), Expect = 5e-17
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G A +   +Y+ AI ++ Q L   P  P  L  R  A +   + E A  D   A   +
Sbjct: 16  SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI--VNFKFKDFNAAV 503
           P   +AW R G AR  + +   A +   K +E E N      +RG+     K ++ N   
Sbjct: 76  PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135

Query: 504 E 504
           E
Sbjct: 136 E 136

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +     +  K  G A  A  E  +AI   ++AL   P +   L  R            A 
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           ED      +D +   A++ LGLA   + +YK A+EA+ K I+ + N            + 
Sbjct: 66  EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD-----AMKRG 120

Query: 564 LANSEKALE 572
           L  +++ +E
Sbjct: 121 LETTKRKIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++A+  +              NRA  YS    H+    D + A  +DP   +A+   G A
Sbjct: 35  TQALS-IAPANPIYL-----SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88

Query: 113 FSALGRKEEALSVWEKGYEHA-LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSS 171
              +   + A   +EKG E      S  +K+ LE  +         +     DV ++  +
Sbjct: 89  RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGA 148

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 5/135 (3%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
               +D L   G      K+++ A++  +  + +   N    +    A S+ G+++KA E
Sbjct: 7   PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE 66

Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
               A  +D  + +AW  L     D+A+ + A E  ++ +  +         R     GL
Sbjct: 67  DAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR-----GL 121

Query: 599 GQHKKAIKDLSSGSR 613
              K+ I++ + G+ 
Sbjct: 122 ETTKRKIEEANRGAE 136

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           ++E   AI  +T+A+   P+       R  A +A G+  +A +D   A   +P  +    
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL--ALSSIGEYKKAEEA 539
             G+  F   D+  A E     ++ +    S     GL      I E  +  E 
Sbjct: 84  RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEP 137

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++ I+      A+ Y      NRA   ++L      I DC+KA++ DP  ++AYI K  A
Sbjct: 28  TEMIK-RAPEDARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157
             A+     AL   +        +  +     E+++L   A Q R
Sbjct: 82  QIAVKEYASALETLDAARTKDA-EVNNGSSAREIDQLYYKASQQR 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 24/111 (21%), Positives = 46/111 (41%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  + +++K  P        R  A A       AI+D  +AI+ +P
Sbjct: 10  EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
           +   A+ R+  A+ A+ E   A++ L  A   +    +    R I    +K
Sbjct: 70  NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 20/104 (19%), Positives = 35/104 (33%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  +  G+      +   A++  ++ ++  P  A     R     K   F  A+ D +  
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++ D     AY     A  ++ EY  A E    A   D      
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 25/112 (22%), Positives = 42/112 (37%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
            A+     G   F   D+  AV+  +  +K   E+   Y+    AL+ +  + +A     
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593
           KAI+ D NF+ A+         +     ALE L      D   +     R +
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +TE I+  P     +  R  A A L    EAI D +KA+E +PN       +  
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                K++ +A+E L A    D E  +  +   +       Y KA + 
Sbjct: 81  AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ----LYYKASQQ 124

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 33  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKR 129

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 18/102 (17%), Positives = 39/102 (38%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +A    GQ +  +    EAI +L +A            +
Sbjct: 75  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 20/109 (18%), Positives = 39/109 (35%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
                  + +  K +G       +  EA     +A+   P  A     R +   K +   
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            A+ D    ++LD ++  A+ +LG     +  Y +A     +A  L + 
Sbjct: 61  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%)

Query: 425 RAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           R F  R+   A + +  AI  NP     +  R      + +  +A+ D  +ALE +  S 
Sbjct: 18  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
                 G    + + ++ A+ +L     L KE +  +     +   I + K+   
Sbjct: 78  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 21/108 (19%), Positives = 44/108 (40%)

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
               +  SA  L E+G   F  + +  A       +  +      YT   L    + + +
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           +A     +A++LD   ++A   L Q   ++ + ++A+  LQ+   + K
Sbjct: 61  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 79.2 bits (195), Expect = 2e-16
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 28  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R  + E    +  S L
Sbjct: 82  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKRWNSIEERRIHQESEL 139

Query: 173 TVSESGLNANDKMSETSENHNKSD 196
               + L A ++  E  E     +
Sbjct: 140 HSYLTRLIAAERERELEECQRNHE 163

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 2/189 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G       KY  A + + + +  +P+       R       ++ E A++D   A++ +
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
             + +A    GQ +  +    EAI +L +A            +      +          
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128

Query: 506 LSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +  + E  S  T L  A     + E ++  E H     +            ++  D
Sbjct: 129 EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188

Query: 564 LANSEKALE 572
           +      ++
Sbjct: 189 MDELFSQVD 197

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 43/101 (42%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA  L E+G   F  + +  A       +  +      YT   L    + + ++A     
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           +A++LD   ++A   L Q   ++ + ++A+  LQ+   + K
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 9/248 (3%)

Query: 336 NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG 395
           N++     S  +   + D+    +  A+R     +  I  S +  +           +  
Sbjct: 20  NEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHS 79

Query: 396 KYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  + ++  D+ +    D      L+   +   + +  +AA+    +       A     
Sbjct: 80  RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA----- 134

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK--FKDFNAAVEDLSACVK 511
              Q    L     A ++L K  + + ++         V+     +    A         
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
                            + G ++ AE    +A+  D    E   +L    Q L    +  
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254

Query: 572 ECLQQVLY 579
                 L 
Sbjct: 255 NRYLSQLK 262

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 62.8 bits (152), Expect = 7e-11
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
            +       +         K   A  IF ++  +       L G+      Q   EAA  
Sbjct: 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD-LSKALEFEPNSADILHERGIVNFK 495
              EA+  +    E           LG+  E     LS+  +   +   I         K
Sbjct: 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277

Query: 496 FKDFNAAVEDLSA 508
             DF+  V   + 
Sbjct: 278 ENDFDRLVLQYAP 290

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R 429
             ++   S ++     +    + +G++ +A  +  + L +D  +PE LI          +
Sbjct: 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

Query: 430 ELEAAISDFTEAIQSNPS 447
             E      ++   ++ S
Sbjct: 250 PPEVTNRYLSQLKDAHRS 267

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 3/137 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           +         A Q+  EA +    + I++NP   E W   G+      +   ++    +A
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 476 LEFEPNSADILHERGIVNF---KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           L+    +A++      V +              +   + LD    +A   L         
Sbjct: 71  LQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130

Query: 533 YKKAEEAHLKAIQLDRN 549
           Y +A E   K + L+  
Sbjct: 131 YAQAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 69.9 bits (171), Expect = 4e-14
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
              ++    + +      ++ +P   E     G    +Q +   ++  + +A+Q      
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 450 EAWKRRGQARAALGE---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           E +               + +    + KAL  + N    L       F   ++  A+E  
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 507 SACVKLDKENKSAYTYL 523
              + L+    +    +
Sbjct: 139 QKVMDLNSPRINRTQLV 155

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 3/142 (2%)

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           Q+  +  +  +      A+       +Q L   +   P +++     G       D++ +
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL---KAIQLDRNFLEAWGHLTQ 559
           +      ++L  EN   Y  L   L          +      KA+ LD N + A   L  
Sbjct: 64  LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123

Query: 560 FYQDLANSEKALECLQQVLYID 581
                AN  +A+E  Q+V+ ++
Sbjct: 124 DAFMQANYAQAIELWQKVMDLN 145

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQS 444
           G   + +  Y++++  + Q L+      E      T   +   Q       +   +A+  
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           + +   A               +AI+   K ++      +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
             Q ++   A   ++ D+ L  D     AL+   +    Q     AI  + + +  N   
Sbjct: 89  YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP- 147

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                     R  L ES+   + L +  + E
Sbjct: 148 -------RINRTQLVESINMAKLLQRRSDLE 171

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 16/86 (18%), Positives = 28/86 (32%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459
                + +L +           G   A   + +AA+     A+  +P+   AWK  G+  
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 460 AALGESVEAIQDLSKALEFEPNSADI 485
              G+   A Q     L    +  D 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
              + L   L    ++  +    G    + + F+AA+  L A +  D     A+ +LG  
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDL 564
           L   G+   A +A    +   ++    +    L  F + L
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
            A  E L A +    +N      LG   +   ++  A      A+  D  +  AW  L +
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 560 FYQDLANSEKALECLQQVLYIDKR 583
             Q   +   A +  +  L   + 
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
                Y++ E     +     AL  DPT   A+   G      G +  A   WE G   A
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 134 LHQSADLKQFLELEELLTAAKQDRSV 159
                D +   EL+  L    ++ ++
Sbjct: 84  -QSRGDQQVVKELQVFLRRLAREDAL 108

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 2/93 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++  R + G       ++ +A+      L  DP Y  A    G     Q +   A   + 
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 440 EAIQSNPSAG--EAWKRRGQARAALGESVEAIQ 470
             + +  S G  +  K        L        
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALEH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 15/71 (21%), Positives = 25/71 (35%)

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
             E     +    + +     L + Y +    + AL  L+  L  D  +S A+   G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 596 HGLGQHKKAIK 606
            G G    A +
Sbjct: 64  QGQGDRAGARQ 74

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 73.8 bits (182), Expect = 5e-16
 Identities = 21/100 (21%), Positives = 41/100 (41%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   
Sbjct: 9   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           P  G+ + R+  A   L    EA +   + L+ E N+  +
Sbjct: 69  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI+ LD      Y      NR+  Y++   ++    D  K + L P   + Y  K  A
Sbjct: 28  SEAIK-LDPHNHVLY-----SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
              L R EEA   +E+G +H
Sbjct: 82  LEFLNRFEEAKRTYEEGLKH 101

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 20/98 (20%), Positives = 45/98 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           V L  +    Y+    AL  +  +++A+  + + ++ +
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 426 AFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           A     ++ A+  ++EAI+ +P     +  R  A A  G+  +A +D  K ++ +P+   
Sbjct: 14  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
               +         F  A       +K +  N      L
Sbjct: 74  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 22/99 (22%), Positives = 43/99 (43%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            + L E+G       + + A++  S  +KLD  N   Y+    A +  G+Y+KA E   K
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
            + L  ++ + +       + L   E+A    ++ L  +
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +   A  A K  G A     +  +A     KA+E +P++    + +  V F+ K F   V
Sbjct: 3   AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 504 EDLSACVKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           +     V++ +E ++       A +  G A     +   A +   +++   R+
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 27/130 (20%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
            ++A    + G   +K KDF  A       ++LD  N + Y           ++ +  + 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA+++ R     +                           K  +KA    G       
Sbjct: 65  CEKAVEVGRETRADY---------------------------KLIAKAMSRAGNAFQKQN 97

Query: 600 QHKKAIKDLS 609
               A++   
Sbjct: 98  DLSLAVQWFH 107

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +  +  A   +D+ ++ DP        +      +++    +    +A++   
Sbjct: 14  LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73

Query: 447 SA-------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
                     +A  R G A     +   A+Q   ++L    +
Sbjct: 74  ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------A 105
            KAI  LD      Y      N+A  Y + +     ++ C+KA+++             A
Sbjct: 32  DKAIE-LDPSNITFY-----NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFL-ELE 147
               G AF        A+  + +       +  +L + + ELE
Sbjct: 86  MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVKELE 126

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
              K+  N A + K F    +   K+I +D     F  ++      E K+A  +   ++ 
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 408 LKEDP-------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           ++          +  +A+   G A   Q +L  A+  F  ++      
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 374 SKSKSISVDFRL-----SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
           S ++   ++  L     ++G     +G Y +A+  +++ +K DP        R       
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            E + A+ D    I+ +    + + R+     A+ E  +A +    AL+ +P++ +    
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C ++L   +  + DCD  ++LD   ++ YI K     A+    +A   +E   + 
Sbjct: 51  SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 24/109 (22%), Positives = 44/109 (40%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           ++     P  A     +G   FK  D+  A+   +  VK D EN   Y+     L+ + E
Sbjct: 3   ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           +++A +     I+LD  F++ +         +    KA    +  L +D
Sbjct: 63  FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 13/88 (14%), Positives = 31/88 (35%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + EA++ +P     +  R      L E   A+ D    +  +         +  
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSA 519
                ++++ A       +++D  N+ A
Sbjct: 90  CLVAMREWSKAQRAYEDALQVDPSNEEA 117

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI  L+   A  Y      NR+  Y + E + + + D  +A++LD   ++ Y  +  +
Sbjct: 37  SQAIE-LNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
             ALG+   AL  +E   +   H      ++ E  +++     +R++  +    + + SL
Sbjct: 91  NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150

Query: 173 TVSESGLNANDK 184
            +    +     
Sbjct: 151 DIESMTIEDEYS 162

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 71.6 bits (176), Expect = 9e-15
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +         Y +AI  + Q ++ +P        R  A         A+ D T AI+ + 
Sbjct: 19  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVE 504
              + + RR  +  ALG+   A++D    ++ +P+  D   +    N   K   F  A+ 
Sbjct: 79  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138

Query: 505 D 505
            
Sbjct: 139 G 139

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
            R   N     F AA+ D    VK+   +K A                 ++A  +AI  D
Sbjct: 86  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-----NKIVKQKAFERAIAGD 140

Query: 548 RN 549
            +
Sbjct: 141 EH 142

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 18/100 (18%), Positives = 45/100 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 23/99 (23%), Positives = 41/99 (41%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           AI+LD+ +++ +         L     AL   + V+ + 
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 71.2 bits (175), Expect = 6e-15
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+        AY  +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 27/126 (21%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A    E G   +K KDF+ A++      +LD  N +  T         G+Y K  E   K
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI++ R   E +                           ++ +KAY   G       ++K
Sbjct: 64  AIEVGRENREDY---------------------------RQIAKAYARIGNSYFKEEKYK 96

Query: 603 KAIKDL 608
            AI   
Sbjct: 97  DAIHFY 102

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 65.0 bits (159), Expect = 7e-13
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  +D+  + DP     +  +      + +         +AI+   
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 447 SAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
              E       A+ R G +     +  +AI   +K+L       
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 18/113 (15%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------A 105
            KA   LD             N+A  Y +   +      C+KA+++     +       A
Sbjct: 28  DKAKE-LDPTNMTYI-----TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHALHQSAD-LKQFLELEELLTAAKQDR 157
           Y   G ++    + ++A+  + K      H++ D LK+  + E++L   +Q+R
Sbjct: 82  YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL--KEQER 130

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 76.6 bits (189), Expect = 6e-15
 Identities = 40/276 (14%), Positives = 79/276 (28%), Gaps = 63/276 (22%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G    N G   + ++ F   ++      E L          G A  +  +   A+     
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    S  +   R G+A++          +G   EA     + L          +    
Sbjct: 112 DLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY----------------------- 522
           L+  G V                   + +    A  +                       
Sbjct: 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G+++ A E H + +++ R F +      A  +L   +  L   E A E  ++
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 577 VLYIDKRFS------KAYHLRGLLLHGLGQHKKAIK 606
            L +           ++ +  G     L +   AI+
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 43/272 (15%), Positives = 79/272 (29%), Gaps = 53/272 (19%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G A    G Y  A+      L       +     ++    G         + A       
Sbjct: 93  GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152

Query: 442 IQSNPSAGE-------------AWKRRGQ---ARAALGESVEAIQDLSKALEF------- 478
           +      G+              +  +G+    R       +  + L++A+EF       
Sbjct: 153 LTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212

Query: 479 ------EPNSADILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY--LGLA 526
                            G   +   DF AA+E     L    +             LG +
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272

Query: 527 LSSIGEYKKAEEAHLKAIQLDR----NFLEA--WGHLTQFYQDLANSEKALECLQQVLYI 580
              +G+++ A E + + + L        +EA     L   Y  L     A+E   + L I
Sbjct: 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332

Query: 581 DKRF------SKAYHLRGLLLHGLGQHKKAIK 606
            +        ++A    G     +G H++A+K
Sbjct: 333 AQELGDRIGEARACWSLGNAHSAIGGHERALK 364

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 73.1 bits (180), Expect = 8e-14
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 17/188 (9%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           S  +   +    G             Q      +   +    L   G       D  A V
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQ-QGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68

Query: 504 EDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------A 553
               A ++   E+     + Y+ LG A   +G+Y KA + H   + L ++  +      +
Sbjct: 69  AFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKD 607
            G+L    + +   ++A  C ++ L + ++        +A +  G + H  G+H      
Sbjct: 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188

Query: 608 LSSGSRTM 615
              G    
Sbjct: 189 GKFGDDVK 196

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 32/235 (13%), Positives = 63/235 (26%), Gaps = 45/235 (19%)

Query: 417 ALIGRGTARAFQRELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQ 470
           +      +           +      Q         S        G+     G+    + 
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 471 DLSKALEFE----PNSADILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY 522
               A++         + I  + G   F   D+N A++    DL+    ++     A + 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 523 --LGLALSSIGEYKKAEEAHLKAIQLDR-----------------------NFLEAWGHL 557
             LG  L  +G + +A     + + L R                         L      
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
                      +A+E  Q+ L + +         +A    G   + LG  + AI+
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G     +GK+    +              A+        +Q  L+         +    +
Sbjct: 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAV------EFYQENLKLM-----RDLGDRGA 221

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDFNA 501
            G A    G     LG+   AI+   + L                   G  +     F  
Sbjct: 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281

Query: 502 AVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----- 550
           A E     + L  E         +   LG   + + E+  A E H + + + +       
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341

Query: 551 -LEAWGHLTQFYQDLANSEKALECLQQVLYI 580
              A   L   +  +   E+AL+  +Q L +
Sbjct: 342 EARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 51/278 (18%), Positives = 84/278 (30%), Gaps = 62/278 (22%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G A      YA A+      L       +     +A    G         + AI      
Sbjct: 50  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109

Query: 442 IQSNPSAGEAWKRRGQARA---------ALGESVEAI-------------QDLSKALEF- 478
           +  +    +   + G+ARA         A G+S                   L  A++  
Sbjct: 110 LDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166

Query: 479 ------------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
                                  G  ++   +F  AV      + + KE         AY
Sbjct: 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECL 574
           + LG A   +GE++ A E + K + L R   +      +   L   Y  L + EKA++  
Sbjct: 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286

Query: 575 QQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
            + L I +         +A    G     LG H +A+ 
Sbjct: 287 LKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 60/276 (21%)

Query: 388 GIAQVNEGKYASAISIFDQ---ILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           G      G   + +S F+    +  ED           G A  +  +   A+      + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 444 SNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHE 488
              + G+   + G+A+A          LG   EAI    + L+       +   A  L+ 
Sbjct: 72  LARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENK--------------------------SAYTY 522
            G V                    +                               A+  
Sbjct: 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGN 188

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E  ++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 577 VLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
            L + ++       +++ +  G     L  ++KAI 
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAE 537
           S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y KA 
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 538 EAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------S 585
           E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +        +
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGS 612
           +A +  G + H  G+         +G 
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGE 150

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 48/239 (20%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRRGQARAALGESVEAIQD 471
             L   G       +  A +S F  A+Q       +    + + G A   L +  +A++ 
Sbjct: 6   LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 65

Query: 472 LSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SA 519
               L        +   A      G       +F+ A+      + + +E         A
Sbjct: 66  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125

Query: 520 YTYLGLALSSIGE--------------------YKKAEEAHLKAIQLDRNFLE------A 553
              LG    + G+                     + A + + + + L     +      A
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
           +G+L   +  L N   A+   +Q L I K F       +AY   G     LG+ + A +
Sbjct: 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 50/247 (20%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 90  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149

Query: 422 GTARAFQRELEAAISDFTEA------IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
                 +  L+AA+  + E       +    + G A+   G     LG   +A+    + 
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 476 LEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
           L        +          G       +F  A E     + L ++ K       +   L
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577
           G   + + +Y+KA + HLK + + +          A   L   Y  L N ++A+   ++ 
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 578 LYIDKRF 584
           L I +  
Sbjct: 330 LEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 30/190 (15%)

Query: 386 SRGIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +    +       +A+ ++++ L       +      A    G           A+    
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207

Query: 440 EAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSAD 484
           + +      G+   +  + RA          LGE   A +   K L            A 
Sbjct: 208 QRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

Query: 485 ILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEE 538
             +  G      +D+  A++     L+   +L            LG A +++G + +A  
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324

Query: 539 AHLKAIQLDR 548
              K +++ R
Sbjct: 325 FAEKHLEISR 334

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 33/238 (13%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
               RG+ + ++ +Y  AI  + +  K     P                   +SD  E  
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEK---ELPF------------------VSDDIEKA 141

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + +    EA+    Q   ++   ++A+        +   +   L         FK ++ A
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 503 VEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFL 551
           +  L A ++L  + +       +   +  +    G+ + A E   KA ++          
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDL 608
           +    L+        ++KA + +++ L      S K Y    L L  + +     + +
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 63.3 bits (154), Expect = 8e-11
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 24/215 (11%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
              A+ I+           ++L          +  + A+     A++           R 
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRF 220

Query: 457 QARA---------ALGESVEAIQDLSKALE-----FEPNSADILHERGIVNFKFKDFNAA 502
            A +           G+   A++   KA +            +L        K      A
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280

Query: 503 VE----DLSACVKL-DKENKSAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWG 555
            +     L        K  K  + +L        + +K  +   + +   L         
Sbjct: 281 FQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACAR 340

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
                ++   + E+A    ++VL   +   K   L
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 20/169 (11%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE------DLSACV 510
             R  + E +E I+   K L         L  RG+  F  K++  A+            V
Sbjct: 76  GNRPTVTELLETIETPQKKLT-GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQD 563
             D E    +  +  A   + +   +    L+A+ + +N         ++   +   Y D
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
             + +KAL  L+  L +          + +           G  + A++
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
                +   Y  A+   +  L+       D     +L+    +     + + A+  F +A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 442 IQSNPSAGEAWKRR-----GQARAALGESVEAIQDLSKALE--------FEPNSADILHE 488
            + +         +            G++ +A Q + + L+        F       L  
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                   +  +  +        L    ++          S   +++A   + K ++   
Sbjct: 309 VYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367

Query: 549 NFLE 552
           + L+
Sbjct: 368 DILK 371

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 49/275 (17%), Positives = 83/275 (30%), Gaps = 56/275 (20%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G A      YA A+      L       +     +A    G         + AI      
Sbjct: 54  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113

Query: 442 IQSNPSA-------------GEAWKRRGQARAALG------ESVEAIQDLSKALEF---- 478
           +  +                G  +  +G++    G         E    L  A++F    
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173

Query: 479 ---------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
                               G  ++   +F  AV      + + KE         AY+ L
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQV 577
           G A   +GE++ A E + K + L R   +      +   L   Y  L + EKA++   + 
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 578 LYIDKRFS------KAYHLRGLLLHGLGQHKKAIK 606
           L I +  +      +A    G     LG H +A+ 
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 73.1 bits (180), Expect = 7e-14
 Identities = 48/279 (17%), Positives = 90/279 (32%), Gaps = 66/279 (23%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G      G   + +S F+  ++   +  E L          G A  +  +   A+     
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    + G+   + G+A+A          LG   EAI    + L+       +   A  
Sbjct: 73  DLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 486 LHERGIV--------------------NFKFKDFNAAVEDLSACVKLDKENK------SA 519
           L+  G V                            AAV+     + L            A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALEC 573
           +  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 574 LQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIK 606
            ++ L + ++        ++ +  G     L  ++KAI 
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 70.0 bits (172), Expect = 8e-13
 Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKK 535
             S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y K
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 536 AEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----- 584
           A E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +       
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125

Query: 585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614
            ++A +  G + H  G+          G   
Sbjct: 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 48/239 (20%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRRGQARAALGESVEAIQD 471
             L   G       +  A +S F  A+Q       +    + + G A   L +  +A++ 
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69

Query: 472 LSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SA 519
               L        +   A      G       +F+ A+      + + +E         A
Sbjct: 70  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 520 YTYLGLALSSIGE--------------------YKKAEEAHLKAIQLDRNFLE------A 553
              LG    + G+                     + A + + + + L     +      A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
           +G+L   +  L N   A+   +Q L I K F       +AY   G     LG+ + A +
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 37/223 (16%)

Query: 394 EGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
                +A+  +++ L       +      A    G           A+    + +     
Sbjct: 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219

Query: 448 AGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHERGIV 492
            G+   +  + RA          LGE   A +   K L            A   +  G  
Sbjct: 220 FGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276

Query: 493 NFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
               +D+  A++     + + +E         A   LG A +++G + +A     K +++
Sbjct: 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336

Query: 547 DRNFLE------AWGHLTQFYQDLANS-EKALECLQQVLYIDK 582
            R   +      A  +L+     L  S       + +   ID 
Sbjct: 337 SREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 44/287 (15%), Positives = 81/287 (28%), Gaps = 69/287 (24%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 94  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
                 +  L+AA+  + E +    + G+   R  Q RA          LG   +A+   
Sbjct: 154 EFPEEVRDALQAAVDFYEENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAH 210

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            + L        +          G       +F  A E     + L ++ K       + 
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECL 574
             LG   + + +Y+KA + HLK + + +   +      A   L   Y  L N ++A+   
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330

Query: 575 QQVLYIDKRF-------------SKAYHLRGLLLHGLGQHKKAIKDL 608
           ++ L I +               S    + GL             ++
Sbjct: 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI 377

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 53  SKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110
           ++A+ +  +   Q+  +      NRA C+ +LE +     +  KA++ D   ++A   + 
Sbjct: 52  TQALGLDATPQDQAVLH-----RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106

Query: 111 CAFSALGRKEEALSVWEKGYEH 132
            A   LGR ++A+   ++    
Sbjct: 107 QALEKLGRLDQAVLDLQRCVSL 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQ 443
            G      G Y  A++ + Q L  D    +  +    R        + + A ++ ++AI+
Sbjct: 34  EGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            +    +A  RR QA   LG   +A+ DL + +  EP +      
Sbjct: 94  KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 428 QRELEAAISDFTEAIQSNPSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
             +   A++ +T+A+  + +  +     + R      L +  +A  + SKA+E +     
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519
            L+ R     K    + AV DL  CV L+ +NK  
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           G++ +    +    +          S+ E  ++ G      G+   A+   ++AL  +  
Sbjct: 1   GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60

Query: 482 SAD--ILHE-RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             D  +LH  R   + K +D++ A  + S  ++ D  +  A      AL  +G   +A  
Sbjct: 61  PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120

Query: 539 AHLKAIQLD 547
              + + L+
Sbjct: 121 DLQRCVSLE 129

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG---LALSSI 530
           +      +S + L + G   FK  D+  A+   +  + LD   +               +
Sbjct: 19  RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
            +Y KAE    KAI+ D   ++A    +Q  + L   ++A+  LQ+ + ++
Sbjct: 79  EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 395 GKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           G  A A+  +++ +    +     E  +G G+      E   A +     ++  P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADIL-HERGI 491
                     LG   + ++ L K +    +   I  +++ I
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 531 GEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           G   +A   + KAI      ++  E +  L   ++ L    KA   L   +         
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 588 YHLRGLLLHGLGQHKKAIKDL 608
                ++L+ LG++++ ++ L
Sbjct: 64  RVFYAMVLYNLGRYEQGVELL 84

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 430 ELEAAISDFTEAIQ---SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
               A+  + +AI          E +   G     LGE  +A   L+  ++  PN   + 
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
               +V +    +   VE L   +    +++           +I  YK+A   +     L
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYADK--L 111

Query: 547 DRNF 550
           D  +
Sbjct: 112 DETW 115

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 462 LGESVEAIQDLSKALEF---EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
           LG   +A+    KA+       + A+     G       ++  A   L+  VK    +++
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
              +  + L ++G Y++  E  LK I    +            + + + ++A+      L
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSD-----------DETIQSYKQAILFYADKL 111

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G      G+Y  A ++    +K+ P +    +            E  +    + I  
Sbjct: 31  LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                                 E IQ   +A+ F  +  D
Sbjct: 91  TSDD------------------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 54  KAIRI--LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           KAI        LA+ Y           +  L  ++         ++  P      +    
Sbjct: 15  KAIASGLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69

Query: 112 AFSALGRKEEALSVWEK 128
               LGR E+ + +  K
Sbjct: 70  VLYNLGRYEQGVELLLK 86

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 11/75 (14%), Positives = 28/75 (37%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
               L           +A     + ++ D +++  + HL + Y+ L  ++ A++   Q +
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

Query: 579 YIDKRFSKAYHLRGL 593
            + +       L  L
Sbjct: 69  EVAREEGTQKDLSEL 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           EDP  P                  A++ F E ++++P     +   G+    L  + +AI
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 470 QDLSKALEFEPNSAD 484
              ++ +E       
Sbjct: 62  DTYAQGIEVAREEGT 76

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
           +P      +     + K  + + A+      V+ D +    Y +LG     +     A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 539 AHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKA 570
            + + I++ R          L          E  
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A  + + +     +   ++ ++ DP  +  Y   G  +  L R ++A+  + +G E A
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
             +    K   EL++    A+ 
Sbjct: 72  -REEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           +     +     + A+++F+++++ DP Y       G         + AI  + + I+  
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDL 472
              G       +  + L ++    + L
Sbjct: 72  REEGTQ-----KDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                   L Q +    N+ +AL   ++++  D  +   Y+  G L   L +   AI 
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 62.0 bits (152), Expect = 3e-12
 Identities = 26/81 (32%), Positives = 41/81 (50%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++A+E  Q+ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70

Query: 579 YIDKRFSKAYHLRGLLLHGLG 599
            +D   ++A    G      G
Sbjct: 71  ELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 57.8 bits (141), Expect = 9e-11
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 472 LSKALEFEPNSADILHERGIV 492
             KALE +PN+A+     G  
Sbjct: 66  YQKALELDPNNAEAKQNLGNA 86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 53.9 bits (131), Expect = 2e-09
 Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 34/115 (29%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                    A+  LG A    G+Y +A E + KA++LD N  EA  +L    Q  
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 52.8 bits (128), Expect = 6e-09
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+ 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 11/93 (11%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + I          Y      N+A    +L  +   I+ C + L+   T     I     
Sbjct: 28  DQLIT-AQPQNPVGY-----SNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145
           +  L   + A+       +  + +  +L +  +
Sbjct: 82  Y-RLELAQGAV----GSVQIPVVEVDELPEGYD 109

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           +  +   E+G   FK   +  AV      +    +N   Y+   +AL  +GEY +A +  
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
            + ++               Y+ L  ++ A+  +Q  +       + Y
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G +   +G Y  A+  +DQ++   P  P     +  A     E   AI    + ++   
Sbjct: 10  QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69

Query: 447 SAGEAWKRR------GQARAALGESVEAIQDLSKALE 477
           +A     R         A+ A+G     + ++ +  E
Sbjct: 70  TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +G +    G   EA+    + +  +P +      + +   K  ++  A++     
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           ++     +       L    +   + A  +    + 
Sbjct: 65  LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + + I + P     +  +  A   LGE  +AIQ   + L +   +  +   R  
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 492 VNFKFKDFNAAVEDL-SACVKLDKENKSA 519
           + ++ +    AV  +    V++D+  +  
Sbjct: 80  LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 34/258 (13%), Positives = 72/258 (27%), Gaps = 40/258 (15%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDF 438
             RG+ ++++ +Y SAI  F +         +     E       +  + ++   ++   
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166

Query: 439 TEAIQ-------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALE------FEPNSADI 485
            +A +        N    +           L +  +AI    KA                
Sbjct: 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKS------AYTYLGLALSSIGEYKKAEEA 539
           L+  G+       +  A+      + + +E+        AY  +      +G+  KA E 
Sbjct: 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286

Query: 540 HLKAIQLDR-----------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
           H K +   +            FL++        + +      LE       +        
Sbjct: 287 HSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL----EDFA 342

Query: 589 HLRGLLLHGLGQHKKAIK 606
                  H     +KA  
Sbjct: 343 IDVAKYYHERKNFQKASA 360

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 22/176 (12%), Positives = 55/176 (31%), Gaps = 25/176 (14%)

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHE------RGIVNFKFKDFNAAVE----- 504
                   E    + DL   ++ +      L E      RG+     +++ +A++     
Sbjct: 70  EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA 129

Query: 505 -DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGH 556
                 VK   E    +  +  +   + +   + +   +A ++ +          +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
               + DL   E A+   Q+   + +         +  +  GL  +   Q++ AI 
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP 245

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
               ++  +Y  AIS F +         +  +    L   G  +  Q + E AI  F  A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 442 IQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--------FEPNSADILH 487
           I         PS  +A+    Q    LG+  +A +  SK +            +  + L 
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
              +     +      + L +   L  + +     +         ++KA    LK  Q+ 
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

Query: 548 RNFLE 552
           +    
Sbjct: 370 QLIQG 374

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 7e-12
 Identities = 109/737 (14%), Positives = 207/737 (28%), Gaps = 260/737 (35%)

Query: 65  QSYEIQDICN---RAF-----CYSQLELHKHVI--RDCDKALQLDPTLLQAYILKGCAFS 114
             Y+ +DI +    AF     C    ++ K ++   + D  +     +     L    F 
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FW 69

Query: 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTV 174
            L  K+E +                +++F+E        + +      Y     MS +  
Sbjct: 70  TLLSKQEEM----------------VQKFVE-----EVLRIN------YKF--LMSPI-- 98

Query: 175 SESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSV 234
                         +E    S +     + RD             L N     AK   +V
Sbjct: 99  -------------KTEQRQPSMMTRMYIEQRDR------------LYNDNQVFAKY--NV 131

Query: 235 PVSKSGLHINGKLREVSENHN-------GSSDGSKSTHASRDASEINRQSSDDFDI---- 283
              +  L +   L E+    N       GS  G K+  A         Q   DF I    
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGS--G-KTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 284 ---CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSD 340
              CN P                   V + L      + D N  S S   S+I     S 
Sbjct: 189 LKNCNSP-----------------ETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSI 230

Query: 341 STESRSKLSFK------------WDMLKETSNEAKRNKKF---C---VTRISKSKSISVD 382
             E R  L  K             +        AK    F   C   +T  ++ K +  D
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--------AKAWNAFNLSCKILLT--TRFKQV-TD 279

Query: 383 FRLSRGIAQVNEGKYAS------AISIFDQILKEDP-MYPEALIGRGTARAFQRELEA-- 433
           F  +     ++   ++         S+  + L   P   P                E   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---------------EVLT 324

Query: 434 ----AISDFTEAIQSNPSAGEAWKRRGQAR--AALGESVEAI-----QDLSKALEFEPNS 482
                +S   E+I+   +  + WK     +    +  S+  +     + +   L   P S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 483 ADI----LHERGIV--NFKFKDFNAAVED-LSACVK---LDKENK-SAYTYLGLALSSIG 531
           A I    L    ++  +    D    V   ++   K   ++K+ K S  +   + L    
Sbjct: 385 AHIPTILL---SLIWFDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK-AYHL 590
           + +     H       R+ ++ +       +   + +     L Q  Y    +S   +HL
Sbjct: 438 KLENEYALH-------RSIVDHY----NIPKTFDSDDLIPPYLDQ--YF---YSHIGHHL 481

Query: 591 RGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKST 650
           +      +   ++          T+   +  +  R+          + +++       + 
Sbjct: 482 K-----NIEHPERM---------TLFRMVFLDF-RF----------LEQKIRHDSTAWNA 516

Query: 651 VSFAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLPCVILSKRESSGDKTFLLQ---- 706
                 TL ++               + Y     D+ P     +R  +    FL +    
Sbjct: 517 SGSILNTLQQL---------------KFYKPYICDNDP---KYERLVNAILDFLPKIEEN 558

Query: 707 ---SRRLRFYWLLIQLA 720
              S+       L+++A
Sbjct: 559 LICSKYTD----LLRIA 571

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 21/168 (12%)

Query: 460 AAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
           AA    +   A +     L     ++      G V      F+ A     A  +  +++ 
Sbjct: 1   AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 518 ------SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFLEA--WGHLTQFYQDL 564
                  A   +G+     G +  A    L+  +L     +     +     +       
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120

Query: 565 ANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606
            +   A +  ++ L   ++       + A+   G L        +A +
Sbjct: 121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF------EP 480
              E +A        +    +A  A    G   A +    EA        +         
Sbjct: 9   ALAERQAQ-----ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 481 NSADILHERGIVNFKFKDFNAAVE----DLSACVKL-DKENKSAYTY--LGLALSSIGEY 533
                LH+ G+V     +++AA      +      L +    ++     +       G+ 
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 534 KKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF--- 584
             A + + K++   +   +      A+  L    Q   N  +A +   +   I       
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183

Query: 585 ---SKAYHLRGLLLHGLGQH 601
              ++       L H    H
Sbjct: 184 EAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 25/176 (14%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             YA A      +L        A    G   AF    + A + F    Q    +G+    
Sbjct: 6   HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---H 62

Query: 455 RGQARA---------ALGESVEAIQDLSKALEF-------EPNSADILHERGIVNFKFKD 498
             + RA           G    A +   +  E           ++   +E   V   F D
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              A ++    +   ++         A+  LG          +A++  L+A  +  
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 64.7 bits (157), Expect = 3e-11
 Identities = 26/189 (13%), Positives = 55/189 (29%), Gaps = 17/189 (8%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGEAWKR 454
              + + + K  P     L     A  +      + L  A     E +QS+P    A   
Sbjct: 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE 238

Query: 455 RGQARAAL--------GESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVE 504
           +                +      ++   +      N + I   + +        + + +
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-WGHLTQFYQD 563
            ++  + L+  +   Y  LG      G  ++A +A+L A  L        W     F   
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357

Query: 564 LANSEKALE 572
           +      L+
Sbjct: 358 VPYVVPYLD 366

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 60.5 bits (146), Expect = 8e-10
 Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 50/195 (25%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-----VEAIQDLSKALEFEPNSAD 484
                        +  P  G       QA   L          A + L + ++  P    
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234

Query: 485 ILHERGIVN--------FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYK 534
              E+ +V+           K   A   ++   V L + N  +  Y    ++    G+  
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           ++ +A    I L+ ++L                                    Y L G +
Sbjct: 295 ESYQAINTGIDLEMSWL-----------------------------------NYVLLGKV 319

Query: 595 LHGLGQHKKAIKDLS 609
               G +++A     
Sbjct: 320 YEMKGMNREAADAYL 334

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQI--LKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
             +      ++E + A+  +  D I  L E          +  +   + + + +      
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
            I    S    +   G+     G + EA      A    P +  +      +
Sbjct: 303 GIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 30  DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV- 88
           +   A A  A +++ +        K +  L++ +     + ++ N +  Y    +   V 
Sbjct: 231 EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290

Query: 89  ------IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQ 142
                  +  +  + L+ + L  Y+L G  +   G   EA       Y  A +       
Sbjct: 291 GKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAA----DAYLTAFNLRPGANT 345

Query: 143 FLELEELL 150
              +E  +
Sbjct: 346 LYWIENGI 353

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  Q ++E A+    E +Q+ P    EA+   G A   LG+  +A+ +   A+E  
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 480 PNSADILHER---GIVNFKFKDF 499
           P+S  +   +    I+NF  KD 
Sbjct: 66  PDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI 442
           +L      +N+G   +A+   ++ L+ +P+   EA    G A     + + A++++  AI
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 443 QSNPSAGEAWKRR 455
           + NP +     R+
Sbjct: 63  ELNPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 41/135 (30%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
             +     G+   A+Q L + L+ EP   D                              
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKD------------------------------ 35

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY  +G A   +G+++KA   +  AI+L+ +                     L   
Sbjct: 36  ---EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFY 84

Query: 575 QQVLYIDKRFSKAYH 589
            + +Y        +H
Sbjct: 85  NKDMYNQLEHHHHHH 99

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
            L + G+ + A +A  + +Q +     EA+  +   Y+ L + +KAL   Q  + ++   
Sbjct: 9   ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Query: 585 SKAYHLRGLL 594
                 + ++
Sbjct: 69  PALQARKMVM 78

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 50  RNWSKAIRI------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +++  AI+       L+   A  Y      NR+  Y + E + + + D  +A++LD   +
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYI 74

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           + Y  +  +  ALG+   AL  +E   +   H      ++ E  +++     +R++  + 
Sbjct: 75  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134

Query: 164 DVSNSMSSLTVSESGLNAN 182
              + + SL +    +   
Sbjct: 135 HKRSVVDSLDIESMTIEDE 153

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 24/93 (25%), Positives = 40/93 (43%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
            R   N     F AA+ D    VK+   +K A 
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              Y +AI  + Q ++ +P        R  A         A+ D T AI+ +    + + 
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADIL--HERGIVNFKFKDFNAAVEDLSACVK 511
           RR  +  ALG+   A++D    ++ +P+  D    ++      K K F  A+        
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA------- 131

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            D+  +S      L + S+    +     L+  ++  +F++  
Sbjct: 132 GDEHKRSVVD--SLDIESMTIEDEYSGPKLEDGKVTISFMKEL 172

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 45/106 (42%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
                 E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            D +  ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 18/78 (23%), Positives = 39/78 (50%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y+ A + + +AI+L+ +    +G+ +  Y        AL    + + +DK++ K Y+ 
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79

Query: 591 RGLLLHGLGQHKKAIKDL 608
           R      LG+ + A++D 
Sbjct: 80  RAASNMALGKFRAALRDY 97

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK  +N+  + K +       S++I ++     +  +R +A +    Y  A+    + 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR----RGQARAALG 463
           ++ D  Y +    R  +     +  AA+ D+   ++  P   +A  +        +    
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
           E   A  +  +++    +   +  E      K +D    +  +   ++  K+ K
Sbjct: 127 ERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQK 180

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKA 536
                  G  ++   +F  AV      + + KE         AY+ LG A   +GE++ A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 537 EEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------ 584
            E + K + L R   +      +   L   Y  L + EKA++   + L I +        
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128

Query: 585 SKAYHLRGLLLHGLGQHKKAIK 606
            +A    G     LG H +A+ 
Sbjct: 129 GRACWSLGNAYTALGNHDQAMH 150

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 454 RRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD 498
           R  Q RA          LG   +A+    + L        +          G       +
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           F  A E     + L ++ K       +   LG   + + +Y+KA + HLK + + +   +
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 553 ------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
                 A   L   Y  L N ++A+   ++ L I + 
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G      G +  A+   +Q L    +  E         A+                   +
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLL---IAKEFGDKAAERIAYS------------------N 54

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
            G A+   G+   A     + +  L++ L+     A   +  G      +D+  A++   
Sbjct: 55  LGNAYIFLGEFETASEYYKKTLL-LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

Query: 508 ACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
             + + +E K       A   LG A +++G + +A     K +++ R
Sbjct: 114 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTA------------RAF----QRELEAAISD 437
           + +   AI  + + L       E                     A      ++   AI  
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
            ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   +   K K
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170

Query: 498 DFNA 501
           +   
Sbjct: 171 EARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 24/109 (22%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI----------CNRAFCYSQLELHKHVIRDCDKALQL 98
           +  + +A+           +I              N A CY++ + +   I    K L++
Sbjct: 58  IVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           D   ++A    G A    G  EEA                +L +   L 
Sbjct: 118 DKNNVKALYKLGVANMYFGFLEEAK--------------ENLYKAASLN 152

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            K K+I +   L+          Y  AI    ++LK D    +AL   G A  +   LE 
Sbjct: 81  DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140

Query: 434 AISDFTEAIQSNPSAGEA 451
           A  +  +A   NP+  + 
Sbjct: 141 AKENLYKAASLNPNNLDI 158

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 16/117 (13%)

Query: 481 NSADILHERGIVNFKFKDFNAAVE----------------DLSACVKLDKENKSAYTYLG 524
            SA  + E G   FK  + N A+                 D     K      S    L 
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
              +   +Y KA +   K +++D+N ++A   L          E+A E L +   ++
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 26/111 (23%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI------------CNRAFCYSQLELHKHVIRDCDKAL 96
           +  +  A+  LD+L+ +    +               N + CY  +           + L
Sbjct: 31  IDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           + + T  +A   +  A  A  + +EA                DLK  L   
Sbjct: 91  KREETNEKALFRRAKARIAAWKLDEAE--------------EDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARA-----------FQRELEAAISDFTEAIQS 444
            Y  A++  D ++  +       +                     +L  A    +E ++ 
Sbjct: 33  AYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
             +  +A  RR +AR A  +  EA +DL   L   P +A ++  
Sbjct: 93  EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  Y  AI  +   L                          +      + +N        
Sbjct: 24  QKDYKEAIDAYRDALTRLDTLILR-------EKPGEPEWVELDRKNIPLYAN-------- 68

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q    +G+  EA +  S+ L+ E  +   L  R          + A EDL   ++  
Sbjct: 69  -MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 514 KENKSAYT-YLGLALSSIGEYKKAEEAHLK 542
               S     + +      E K        
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYS 157

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            +    ++    +     +N G    A     ++LK +    +AL  R  AR    +L+ 
Sbjct: 56  VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115

Query: 434 AISDFTEAIQSNPSAGEAWKR 454
           A  D    ++++P+A     R
Sbjct: 116 AEEDLKLLLRNHPAAASVVAR 136

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            S + L ++G   F  KD+  A++     +                    GE +  E   
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------REKPGEPEWVELDR 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
                        + +++Q Y ++ +  +A E   +VL  ++   KA   R        +
Sbjct: 61  KNIP--------LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK 112

Query: 601 HKKAIKDL 608
             +A +DL
Sbjct: 113 LDEAEEDL 120

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 60.3 bits (146), Expect = 7e-10
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTA--------RAF----QREL 431
           RG     EGKY  A+  + +I+     +  +      +  A         A      +  
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272

Query: 492 VNFKFKDFNA 501
              + +   A
Sbjct: 273 CQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---------CNRAFCYSQLELHKHVIRDCDKALQLD 99
           L  + K +  L+   + S E              N A C+ +L+     I  C+KAL+LD
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
               +    +G A  A+   E A + ++K  +   +  A   Q    ++ +     
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 37/77 (48%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434
           K++++ +   L+  +  +    +++AI   ++ L+ D    + L  RG A     + E A
Sbjct: 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA 249

Query: 435 ISDFTEAIQSNPSAGEA 451
            +DF + +Q  P+   A
Sbjct: 250 RADFQKVLQLYPNNKAA 266

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 19/128 (14%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             + I+ ERG V FK   +  A+      V           +L    S   E  +  +A 
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVS----------WLEYESSFSNEEAQKAQAL 194

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
             A  L  N       L   +  L     A+E   + L +D    K    RG     +  
Sbjct: 195 RLASHL--N-------LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 601 HKKAIKDL 608
            + A  D 
Sbjct: 246 FELARADF 253

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE---------------RGIV 492
                K RG      G+  +A+    K + +    +   +E                 + 
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           + K + F+AA+E  +  ++LD  N+   +  G A  ++ +++ A     K +QL 
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 23/184 (12%)

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDF 499
            SA   + +   A     +  +A     +  E         ++A    + G++    +  
Sbjct: 33  DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92

Query: 500 NAAVEDLSACVKL----DKENKSAYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNF---- 550
             AV+ +     +       + +A        L    +  KA   + +A  +  N     
Sbjct: 93  PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLR 152

Query: 551 --LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHK 602
              E  G  ++        ++A   LQ+   + K         K    + L+      + 
Sbjct: 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 603 KAIK 606
            A K
Sbjct: 213 AAQK 216

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 31/207 (14%)

Query: 395 GKYASAISIFDQ---ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
             Y SA S + +     K      +A        A+ +E EA         +S   A +A
Sbjct: 30  PDYDSAASEYAKAAVAFKNAKQLEQAK------DAYLQEAEAH-----ANNRSLFHAAKA 78

Query: 452 WKRRGQARAALGESVEAIQDLSKALEF-----EPNSADILHERGIVNFKFKDFNAAVE-- 504
           +++ G     L    EA+Q + KA         P++A +  +R     +  D + AV   
Sbjct: 79  FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLY 138

Query: 505 --DLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAW 554
               +     ++  ++A         L    ++ +A  +  K   + +         +  
Sbjct: 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198

Query: 555 GHLTQFYQDLANSEKALECLQQVLYID 581
                     A+   A +C+++   I 
Sbjct: 199 IAQVLVQLHRADYVAAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 27/221 (12%), Positives = 67/221 (30%), Gaps = 38/221 (17%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSN 445
            +A  N  +   A   + Q  +    +         A+AF++   +   +    EA+Q  
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAE---AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI 99

Query: 446 PSAGEAWKRRGQARAA------------LGESVEAIQDLSKALEF------EPNSADILH 487
             A   +   G    A              +  +A+    +A            +A+++ 
Sbjct: 100 EKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIG 159

Query: 488 ERGIVNFKFKDFNAAVED----LSACVKLDKENKSAYTYL--GLALSSIGEYKKAEEAHL 541
           +   +  + + F+ A        S   +++         +   L      +Y  A++   
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLA------NSEKALECLQQ 576
           ++  +   F  +        +DL       + E+ L   + 
Sbjct: 220 ESYSIPG-FSGSEDC--AALEDLLQAYDEQDEEQLLRVCRS 257

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 57.7 bits (139), Expect = 5e-09
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFD---QILKEDPMYPEALIGRGTARAF------ 427
           +  + D R   G +   E K   A+  ++     + +D M+      +  A A       
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 428 --------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                    +  + AI      +       +A  RRG+A+A LG+   A  D  KA ++ 
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

Query: 480 PNSADILHERGIVNFKFKDFNA 501
           P+   I  E   +  + K    
Sbjct: 295 PDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 49  LRNWSKAIRIL---------DSLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQ 97
           ++ +  AI  +               +  +++ C  N A C  +L+ +   I  C+  L 
Sbjct: 199 MQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258

Query: 98  LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
            +    +A   +G A + LG+ + A   + K  ++A    A  ++   L E   A  Q
Sbjct: 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 23/72 (31%), Positives = 32/72 (44%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           + + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E 
Sbjct: 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347

Query: 490 GIVNFKFKDFNA 501
             V  K K    
Sbjct: 348 LKVKQKIKAQKD 359

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           + +   A+    +ALE +P++   L+ R       K+++ A+ DL    ++  E+K+   
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345

Query: 522 YLGLALSSIGEYKKAEEAHLK 542
            L      I   K  E+A   
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYA 366

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 24/109 (22%)

Query: 49  LRNWSKAIRILD--------SLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQL 98
           ++ ++K +R ++        +  A+   +   C  N   C  ++   +  +  C +AL++
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           DP+  +A   +   +  L   ++AL              ADLK+  E+ 
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQAL--------------ADLKKAQEIA 337

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            RE   A+    +A+  + +  +   RRG+A+  + E   A  D  K LE  P +     
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 488 ERGIVNFKFKDFNA 501
           +  +   K K+ N 
Sbjct: 390 QISMCQKKAKEHNE 403

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDIC---------NRAFCYSQLELHKHVIRDCDKALQLD 99
           +  + K +  L+     S +              N A CY +L  +   +  CDKAL LD
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
               +    +G A   +   E A                D ++ LE+ 
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAK--------------GDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 51.2 bits (122), Expect = 8e-07
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           L E  +A++   KAL  +  +   L+ RG       +F +A  D    ++++ +NK+A  
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 522 YLGLALSSIGEYKKAE 537
            + +      E+ + +
Sbjct: 390 QISMCQKKAKEHNERD 405

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 37/264 (14%), Positives = 69/264 (26%), Gaps = 50/264 (18%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G     +G+   ++++  Q  +             +LI +      Q  L+ A     +A
Sbjct: 60  GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119

Query: 442 IQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----------- 482
            Q          P      + R Q   A     EA       +E   +            
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179

Query: 483 -ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-------SAYTYLGLALSSIGEYK 534
                  RG       D + A   L+    L    K       +A     +     G+  
Sbjct: 180 LIQCSLARG-------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232

Query: 535 KAEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------ 584
            A        + +          W ++ +    L   E A   L+++    +        
Sbjct: 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDL 608
           ++   L   L    G+   A + L
Sbjct: 293 NRNLLLLNQLYWQAGRKSDAQRVL 316

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAI 435
            + +      +G   +A    ++          ++ PM+   +  R         L+ A 
Sbjct: 96  LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155

Query: 436 SDFTEAIQSNPSAGEAWKRRG---QARAAL--GESVEAIQDLSKALEFEPNS-------A 483
           +     I+   S     + +      + +L  G+   A   L++      N        +
Sbjct: 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAEE- 538
           +    R I      D  AA   L    K +  N       +  +  A   +GE++ AE  
Sbjct: 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV 275

Query: 539 -----AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
                 + ++++L  +       L Q Y        A   L   L
Sbjct: 276 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 19/166 (11%)

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI-----LHERGIVNFKFKDFNAAV 503
            E    R Q     G   EA +    ALE  P              G V     +   ++
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 73

Query: 504 EDLSACVKLDKENKS------AYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFL 551
             +    ++ +++        +       L + G  + A E   KA QL      ++  +
Sbjct: 74  ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133

Query: 552 EAWGH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
             +      Q     A  ++A    +  + +   +     L+ L +
Sbjct: 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 15/131 (11%), Positives = 42/131 (32%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L +    + +G++A A+++   +  E     +  + +       ++ E A          
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                                   ++ L + L   P++ ++  E  +   +      A+E
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129

Query: 505 DLSACVKLDKE 515
            L   +K++  
Sbjct: 130 LLWNILKVNLG 140

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 25/143 (17%), Positives = 48/143 (33%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SN S  E   ++       GE  +A+  +    +   +  D+   +     + K F  A 
Sbjct: 1   SNASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           E L+      ++N        L L          +   + +  + +  E    L   Y  
Sbjct: 61  ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120

Query: 564 LANSEKALECLQQVLYIDKRFSK 586
           +   E+ALE L  +L ++     
Sbjct: 121 VGRDEEALELLWNILKVNLGAQD 143

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 35/240 (14%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR------------------A 426
               ++ +     A ++ +F +I   D    +A IGR                       
Sbjct: 11  FESAVS-MLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQ 69

Query: 427 FQRELEAAISDFTEAIQSNP----------SAGEAWKRRGQARAALGESVEAIQDLSKAL 476
               ++ ++S     I              S            AA G   +A++ L  A 
Sbjct: 70  LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYK 534
                       + +V    + +   ++ + +  K   +    +A    G+A +++  + 
Sbjct: 130 VAGSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188

Query: 535 KAEEAHLKAIQLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
           +AE    +A               +L    +   N   A+  L+ +         A  L+
Sbjct: 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 17/188 (9%)

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADILH 487
                ++  FTE    + SA +AW      R   G+     +           +  +   
Sbjct: 20  MSEARSLDLFTEITNYDESACDAW----IGRIRCGDTDRVTLFRAWY------SRRNFGQ 69

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---LGLALSSIGEYKKAEEAHLKAI 544
             G V       NA +        +     S            ++ G Y  A EA   A 
Sbjct: 70  LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHK 602
                 L AW     +          ++ ++       +F    A    G+    L    
Sbjct: 130 VAGSEHLVAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188

Query: 603 KAIKDLSS 610
           +A + L+ 
Sbjct: 189 EAERRLTE 196

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 23/122 (18%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------------ALIGRGTARAFQRE 430
             LS    Q+  G+Y  A +   + ++     P                G   A A  R 
Sbjct: 13  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72

Query: 431 LEAAISDFTEAIQS-------NPSAGEAWK----RRGQARAALGESVEAIQDLSKALEFE 479
            + A+    +A+         N   G+ W      R  A   LG   EA+ +  K +E  
Sbjct: 73  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132

Query: 480 PN 481
             
Sbjct: 133 EE 134

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
                +  GKY  A  +F   L+        P AL   G +    R  + A + F + + 
Sbjct: 8   VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67

Query: 444 SNPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
             P+   A     + G ++   G++ EA Q L +     P S 
Sbjct: 68  RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 16/105 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
                L +  +S G Y+ A     +A++                   L   Y+D    + 
Sbjct: 28  RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK 606
           A   L   L I ++         +   +   +L    G++K+A  
Sbjct: 88  AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 132

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+    E+
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK 606
                Q+ L I +          +K  +         G+ K+A  
Sbjct: 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.8 bits (107), Expect = 6e-05
 Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 17/105 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------NFLEAWGHLTQFYQDLANSE 568
                L       G++K+AE  + + +                  W H  +  +     +
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255

Query: 569 KALECLQQVLYIDKRFS-------KAYHLRGLLLHGLGQHKKAIK 606
                 +   +  K                G L    G+ + A  
Sbjct: 256 DGTSFGEYGGWY-KACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+   +E+
Sbjct: 86  ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK 606
                ++ L I            +K  +         G+++ A  
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 16/100 (16%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEKALECL 574
           L L      +YK+A      A+ +    L            +L   Y      ++A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 575 QQVLYIDKRFS--------KAYHLRGLLLHGLGQHKKAIK 606
           ++ L I ++          K  +   LL    G+ ++   
Sbjct: 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 12/106 (11%), Positives = 26/106 (24%), Gaps = 19/106 (17%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------NFLEAWGHLTQFYQDLANSE 568
                L       G+Y+ AE  + + +             +    W H  +  +      
Sbjct: 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229

Query: 569 KALECLQQVLYIDKRFSKAYHLR--------GLLLHGLGQHKKAIK 606
            +    +   +   +  K             G L    G+ + A  
Sbjct: 230 DSAPYGEYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 21/111 (18%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQD 563
           +   +   +   GL          A     +A++                   L   Y+D
Sbjct: 1   MGSSHHHHHHSSGL-----VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 55

Query: 564 LANSEKALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK 606
               ++A   L   L I ++         +   +   +L    G++K+A  
Sbjct: 56  QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 106

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 2/129 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
            +  + E  Y  A+ +     +      E  +            E A       I     
Sbjct: 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDA-EAVLXTIPLQDQ 182

Query: 448 AGEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    Q            IQ L + +   P  A +  +  +   +      A+E L
Sbjct: 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242

Query: 507 SACVKLDKE 515
              ++ D  
Sbjct: 243 FGHLRXDLT 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	741
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-31
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-28
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-27
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-21
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-19
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-19
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-15
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-16
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-10
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-15
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-14
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-15
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-15
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-14
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-11
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-11
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	2e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.003
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	8e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	6e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	5e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-04
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.001
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.004
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	8e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 5e-31
 Identities = 42/250 (16%), Positives = 87/250 (34%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
                    +       K C  +  +++        + G     +G+   AI  F++ + 
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            DP + +A I  G      R  + A++ +  A+  +P+               G    AI
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
               +A+E +P+  D          +      A +  +  ++L   +  +   L      
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G  ++A   + KA+++   F  A  +L    Q     ++AL   ++ + I   F+ AY 
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 590 LRGLLLHGLG 599
             G  L  + 
Sbjct: 378 NMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 4e-28
 Identities = 41/208 (19%), Positives = 86/208 (41%)

Query: 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
            + + + ++  P +  A    G     Q E+  AI  F +A+  +P+  +A+   G    
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
                  A+    +AL   PN A +      V ++    + A++     ++L      AY
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
             L  AL   G   +AE+ +  A++L     ++  +L    ++  N E+A+   ++ L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
              F+ A+     +L   G+ ++A+   
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHY 362

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (279), Expect = 3e-27
 Identities = 34/186 (18%), Positives = 75/186 (40%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++ G        +  A++ + + L   P +             Q  ++ AI  +  
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI+  P   +A+     A    G   EA    + AL   P  AD L+    +  +  +  
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      +++  E  +A++ L   L   G+ ++A   + +AI++   F +A+ ++   
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 561 YQDLAN 566
            +++ +
Sbjct: 383 LKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 1e-21
 Identities = 44/258 (17%), Positives = 87/258 (33%), Gaps = 34/258 (13%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQA----------------------------------RAALGESVEAIQ 470
           NP   EA+   G                                      A G+   A+Q
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
               AL++ P+   +  + G +         A       ++       A++ LG   ++ 
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           GE   A     KA+ LD NFL+A+ +L    ++    ++A+    + L +    +  +  
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 591 RGLLLHGLGQHKKAIKDL 608
              + +  G    AI   
Sbjct: 243 LACVYYEQGLIDLAIDTY 260

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 3e-19
 Identities = 54/287 (18%), Positives = 91/287 (31%), Gaps = 35/287 (12%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--------------- 424
           +    L          +   +       +K++P+  EA    G                 
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

Query: 425 -------------------RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
                                   ++E A+  +  A+Q NP         G    ALG  
Sbjct: 92  HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
            EA     KA+E +PN A      G V     +   A+      V LD     AY  LG 
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
            L     + +A  A+L+A+ L  N     G+L   Y +    + A++  ++ + +   F 
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFN 632
            AY      L   G   +A    ++ +  + P    +L    N+   
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNT-ALRLCPTHADSLNNLANIKRE 317

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 9e-14
 Identities = 23/119 (19%), Positives = 44/119 (36%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             D   +   A   +G  A A   ++  L+  P + ++L      +  Q  +E A+  + 
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +A++  P    A           G+  EA+    +A+   P  AD     G    + +D
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 4e-13
 Identities = 46/398 (11%), Positives = 112/398 (28%), Gaps = 22/398 (5%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    Q    +   R C +  + +P      +L         R + +          A
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHF----STLA 59

Query: 134 LHQSADLKQ-FLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH 192
           + Q+  L + +  L  +     Q +     Y  +  +    +      A   ++      
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119

Query: 193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSE 252
                  +   + D+    S   +         +          ++    +         
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179

Query: 253 NHNGSSDGSKSTHASRDASEINRQSSD------DFDICNGPIDKA-SVNERHGRQTNGTH 305
           N  G      + H    A  ++    D      +        D+A +   R    +    
Sbjct: 180 NAQGEIW--LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237

Query: 306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN 365
            VH  L+         +   ++Y ++        D+  + +    +   + E  +     
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425
            + C            D   +    +  +G    A+ ++ + L+  P +  A     +  
Sbjct: 298 LRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
             Q +L+ A+  + EAI+ +P+  +A+   G     + 
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 9e-13
 Identities = 35/235 (14%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
            +          + EAA     +  +  P                     +    + A++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 478 FEPNSADILHERGIV----------------------------------NFKFKDFNAAV 503
             P  A+     G V                                       D   AV
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           +   + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +  
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618
                 A+   ++ + +D  F  AY   G +L       +A+            H
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 23/155 (14%), Positives = 46/155 (29%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
             E     ++  DF AA        + + +N      L           ++      AI+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
            +    EA+ +L   Y++    ++A+E  +  L +   F   Y      L   G  + A+
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 606 KDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRR 640
           +   S  +               L         + 
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L   R + +A+      L+ S     +  N A  Y +  L    I    +A++L P    
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEH 132
           AY     A    G   EA   +      
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRL 300

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 8e-06
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICN-RAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L    + ++A    ++ L       D  N  A    +    +  +R   KAL++ P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A+          G+ +EAL  +++   
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 105 AYILKGCAFSALG 117
           AY   G     + 
Sbjct: 375 AYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            N    ++        I   +KA+ LDP  L AYI  G         + A++ + +   
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 41  IELAKLC-SLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAF 113
           +P L +AY   G  +
Sbjct: 63  NPLLAEAYSNLGNVY 77

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 1e-19
 Identities = 26/260 (10%), Positives = 72/260 (27%), Gaps = 8/260 (3%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA- 458
           +     Q         ++ +G       ++ L+     + + + ++       K      
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61

Query: 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
             A    +  +Q  +K       S    +    +      +   +++L     +D   + 
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
             + LG+  +         +    +            HL    +    + +A    +   
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL--IWNLTRWRNLCFNAWPF 636
            +     + Y+   +L    G H   I           P      NL +  +    +   
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE 239

Query: 637 IRRRLLCTRLLKSTVSFAGL 656
           ++ +   +  +K+ + F G 
Sbjct: 240 VKTKWGVSDFIKAFIKFHGH 259

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 2e-15
 Identities = 33/290 (11%), Positives = 66/290 (22%), Gaps = 36/290 (12%)

Query: 397 YASAISIFDQILKEDP---MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           + + I+      K                   A        + +       +        
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + G        +   ++  S +          L   G +       + A        +L 
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             N   Y  L +  SS G++      + ++I +   F  A  +L +       S   ++ 
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242

Query: 574 -------------LQQVLYIDKRFSKAYHLRGLLLHGLGQHKK----------------- 603
                            +Y+ K   K   LR  L     +                    
Sbjct: 243 KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINL 302

Query: 604 -AIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS 652
             +  L   S     H      +       A       +LC   L++   
Sbjct: 303 FQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQ 352

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 5e-08
 Identities = 16/147 (10%), Positives = 37/147 (25%), Gaps = 8/147 (5%)

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
           S+++ Q L +A   + +  D       V    +      + +   +  D E         
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKM---LVTDLEYALDKKVEQ 58

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH---LTQFYQDLANSEKALECLQQVLYID 581
              +    +K          +   N   +                  + L+ L  V  +D
Sbjct: 59  DLWNH--AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD 116

Query: 582 KRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                     G++ +        +K  
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQ 143

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 8/71 (11%), Positives = 19/71 (26%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G       + + A S +    +  P   +         + + +    I  +  +I     
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 448 AGEAWKRRGQA 458
              A     +A
Sbjct: 219 FPAASTNLQKA 229

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.1 bits (191), Expect = 4e-16
 Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 8/218 (3%)

Query: 391 QVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           ++ E  +A  + +  + L+ D   +      R  A          ++     I  N S  
Sbjct: 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
            +W  R      L    ++               +++       F     + +       
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRW 234

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +    E            + +    ++ +   +    ++  L     L +    L   ++
Sbjct: 235 LLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 294

Query: 570 ALECLQQVLYIDKRFSKAYHLRG---LLLHGLGQHKKA 604
            L+    +  +D   +          LL + + + + A
Sbjct: 295 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.2 bits (142), Expect = 5e-10
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 13/196 (6%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV----------NFKFKDF 499
            A +   Q R A       ++  S+ L   P+ A + + R  V                 
Sbjct: 30  SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHL 557
            A +  L +C++++ ++   + +    LS + E  + +  E   + ++ D      W + 
Sbjct: 90  KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149

Query: 558 TQF-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM 616
                Q      + L     ++  +     ++H R  LL  L     +          ++
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209

Query: 617 PHLIWNLTRWRNLCFN 632
             L      +     +
Sbjct: 210 KELELVQNAFFTDPND 225

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 4/153 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R            +               E +        F    + +   +   +    
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRA 239

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                 +   +    L   +E+ ++L +           +                ++  
Sbjct: 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           S    +D    +    L           K E A
Sbjct: 300 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.6 bits (182), Expect = 7e-16
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +PSA +  K +G       +  EA     +A+   P  A     R +   K +    A+ 
Sbjct: 1   SPSA-QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           D    ++LD ++  A+ +LG     +  Y +A     +A  L +     +G         
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-- 117

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                A +     +   +   ++     L      + ++ +++ 
Sbjct: 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEEC 158

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 3e-15
 Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 5/188 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + +A    GQ +  +    EAI +L +A            +      +      A +  
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKR 124

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++  + ++ +  +  L      E ++  E   +  +   +                 
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

Query: 567 SEKALECL 574
               ++ L
Sbjct: 185 YMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.1 bits (173), Expect = 1e-14
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 5/193 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           + L  +G      R+   A + +  AI  NP     +  R      + +  +A+ D  +A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           LE +  S       G    + + ++ A+ +L     L KE +  +     +       + 
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-----LRI 119

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
           A++    +I+  R   E+  H        A  E+ LE  Q+     +        +  + 
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 596 HGLGQHKKAIKDL 608
               ++   + +L
Sbjct: 180 AKHDKYMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 20/187 (10%), Positives = 54/187 (28%), Gaps = 10/187 (5%)

Query: 355 LKETSNEAKRNKKF-----CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           LKE  N     +K+     C  R      +   +  +R +  +   +   A++   + L+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            D    +A    G  +      + AI++   A          +     +   +     A 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AK 121

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +    ++E      +      +      +    +E+     +  +++           + 
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

Query: 530 IGEYKKA 536
             +Y   
Sbjct: 182 HDKYMAD 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 3/163 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +L   R + +A       + ++  +     NRA CY +++  +  + DC +AL+LD   +
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           +A+   G     +   +EA++  ++ Y   L +   L    ++   L  AK+ R  + E 
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 164 DVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRD 206
              +  S L    + L A ++  E  E     +  +     R 
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 6e-15
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ +RG       +   AI+DL +AL     +  I ++   + FK           
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE------ 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                           +    +   E+KKAEE    A  +                  + 
Sbjct: 122 ------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSK 157

Query: 567 SEKALECLQQVLYIDKR 583
            +KA+EC+ +    +  
Sbjct: 158 IDKAMECVWKQKLYEPV 174

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-11
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 19/139 (13%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           L   G++    KD+  A++  S    +   +      +G   + +    +AE+A  ++I 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----------------RFSKAYH 589
            D++   A+      Y      + A++ L++ L   +                   +  +
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 124

Query: 590 LRGLLLHGLGQHKKAIKDL 608
               +     + KKA + L
Sbjct: 125 NIAFMYAKKEEWKKAEEQL 143

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           +  AI+   E       ++W  A+    ++      I    N    Y+ L+      +  
Sbjct: 2   LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAF 59

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            +++  D  L  AY  +G  +    + + A+   ++    
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 6e-15
 Identities = 47/241 (19%), Positives = 90/241 (37%), Gaps = 17/241 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142

Query: 494 ----FKFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+L     +      LG+  +  GEY KA +    A+ + 
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262

Query: 608 L 608
            
Sbjct: 263 F 263

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 4/173 (2%)

Query: 474 KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           K  +FE            E G+   +  D   AV    A V+ D ++  A+ YLG   + 
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
             +   A  A  + ++L  +   A   L   + + +   +A E L+  L     ++    
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125

Query: 590 LRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLL 642
                  G G         S  S ++   +         L   +     +  L
Sbjct: 126 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 3/152 (1%)

Query: 428 QRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
                     F  A++        +     G      GE  +A+   + AL   PN   +
Sbjct: 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 208

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
            ++ G           AV      ++L      +   LG++  ++G +++A E  L+A+ 
Sbjct: 209 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268

Query: 546 LDRNFLEAWGHLTQFYQDLANS-EKALECLQQ 576
           + R      G      +++ ++   AL  L Q
Sbjct: 269 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 10/86 (11%), Positives = 22/86 (25%)

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLI 620
                +   A+   +  +  D +  +A+   G       Q   AI  L         +  
Sbjct: 29  RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 88

Query: 621 WNLTRWRNLCFNAWPFIRRRLLCTRL 646
             +    +    +       +L   L
Sbjct: 89  ALMALAVSFTNESLQRQACEILRDWL 114

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 10/69 (14%), Positives = 23/69 (33%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           +            Q     + +   + A+Q DP  ++A+   G   +   ++  A+S   
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 77

Query: 128 KGYEHALHQ 136
           +  E     
Sbjct: 78  RCLELKPDN 86

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 71.0 bits (172), Expect = 4e-14
 Identities = 39/227 (17%), Positives = 66/227 (29%), Gaps = 6/227 (2%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFY 561
           +DL A  + D  +     +L LA   + E +  E       + D+               
Sbjct: 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
            +    E+          + +  S+     G     LG    A    
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 232

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 69.5 bits (168), Expect = 1e-13
 Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 2/232 (0%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
              + +          RG+   + G  A A + F Q L   P  PE     G        
Sbjct: 27  ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            +AA   F   ++ +P+   A   RG A    G    A  DL    + +PN         
Sbjct: 87  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146

Query: 491 IVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           +   K  +  A         K DKE    +   +    +S     ++ +        L  
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  E   +L ++Y  L + + A    +  +  +      +    L L  LGQ
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 26/127 (20%), Positives = 50/127 (39%)

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           + L++    D E        G+   S+G    A     +A+ +  +  E + +L  +   
Sbjct: 24  QILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 83

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNL 623
             N + A E    VL +D  ++ A+  RG+ L+  G+ K A  DL +  +        +L
Sbjct: 84  AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143

Query: 624 TRWRNLC 630
             +    
Sbjct: 144 WLYLAEQ 150

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 23/162 (14%), Positives = 58/162 (35%), Gaps = 1/162 (0%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
             Q+    +  L+ + Q+L  D R +  ++ R  ++     +
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 196

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-11
 Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 9/207 (4%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 39  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 98

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 99  NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 158

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL------ANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W        +       A  E+ ++   +++ +   
Sbjct: 159 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 218

Query: 584 FSKAYHLRGLLLH--GLGQHKKAIKDL 608
              A++    +L   GL ++   +  L
Sbjct: 219 NESAWNYLKGILQDRGLSKYPNLLNQL 245

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 1/104 (0%)

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
            +      +  I     F + + +     Q    SE+A +  +  + ++      +H R 
Sbjct: 25  PQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 84

Query: 593 LLLHGLGQH-KKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWP 635
           +LL  L +   + +  +++       +      R   + +   P
Sbjct: 85  VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 457 QARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           Q + AL  G+  +A++ L +A++  P  A +      +     DF  A E L   +KL  
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALEC 573
           E     + L   + +    K   +    A  L  N  L              + E+  E 
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 574 LQQVLYIDKRFSKAYHLRG 592
             Q+  + +      +   
Sbjct: 122 ALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 1/136 (0%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           ++EG+   A+ +  + +K  P                 + E A     ++I+  P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACV 510
             +      A     +  Q  + A                 ++   +D+    E      
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 511 KLDKENKSAYTYLGLA 526
           +L +E          +
Sbjct: 127 ELRQEKGFLANDTSFS 142

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 1/131 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           + +L+ A+    EAI+++P          +     G+   A + L ++++  P       
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
           +   +    +      +  +    L + E  +             +Y++  E  L+  +L
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Query: 547 DRNFLEAWGHL 557
            +         
Sbjct: 129 RQEKGFLANDT 139

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 1/112 (0%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDF 438
               R S       +G +  A     Q +K  P Y           +A Q   + A    
Sbjct: 29  DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           T  +                     +  +  +   +  E       + ++  
Sbjct: 89  TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 14/112 (12%), Positives = 39/112 (34%), Gaps = 1/112 (0%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
               A+E L   +K   ++ S  +     L   G++++A+E  +++I+L   +L     L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDL 608
               +     +   +       + +        +   L      +++  +  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 12/78 (15%), Positives = 26/78 (33%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G+ ++A E  ++AI+             +      + E+A E L Q + +   +      
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 591 RGLLLHGLGQHKKAIKDL 608
              L+      K   +  
Sbjct: 70  LRHLVKAAQARKDFAQGA 87

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 2/127 (1%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQ 600
           AI+LD+ +++ +         L     AL   + V+ +      A         +     
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 601 HKKAIKD 607
            ++AI  
Sbjct: 130 FERAIAG 136

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANS 567
           ++LDK+    Y     +  ++G+++ A   +   +++  +  +A                
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 568 EKALECLQQ 576
           E+A+   + 
Sbjct: 131 ERAIAGDEH 139

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+  Y         +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G     +  + +A+  +D+  + DP     +  +      + +         +AI+    
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

Query: 448 AGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
             E       A+ R G +     +  +AI   +K+L       D+L +
Sbjct: 71  NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
            A K  G   AA G   +A + LS AL                     D           
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV------------LDDLRDFQFVEPFA 59

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++   A+T    A  + G                      W  L   Y        
Sbjct: 60  TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119

Query: 570 ALECLQQV 577
           AL   ++V
Sbjct: 120 ALGAYRRV 127

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 22/122 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----------------------EAWK 453
            A    G   A     E A    + A++                             A  
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHT 71

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
            + +A  A G +   I +L       P    +  +     +     + A+          
Sbjct: 72  AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131

Query: 514 KE 515
            +
Sbjct: 132 AD 133

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 5/107 (4%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA---AISDFTEAIQ--SNP 446
           V+          F        +               R  +     I    E +   S  
Sbjct: 10  VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
              +           L E  +A++ +   L+ EP +        +++
Sbjct: 70  EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-----HLKAIQLDRNFL 551
           +D     +   +       +KS        L          +       L          
Sbjct: 13  EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +   +L      L   EKAL+ ++ +L  + + ++A  L  L+
Sbjct: 73  DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 11/110 (10%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---AVEDLSACVKLDKENK 517
           ++ + ++  +           S     E      + +  +     +  L   +    + +
Sbjct: 11  SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE 70

Query: 518 S--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                 YL +    + EY+KA +     +Q +    +A        + + 
Sbjct: 71  QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY---QDLANSEKALECLQQVLYIDK 582
            L S+ +  K E+                          +   +  K +  L+++L    
Sbjct: 8   ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS 67

Query: 583 --RFSKAYHLRGLLLHGLGQHKKAIKDL 608
                       +  + L +++KA+K +
Sbjct: 68  KEEQRDYVFYLAVGNYRLKEYEKALKYV 95

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 21/106 (19%), Positives = 42/106 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   P
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             G+ + R+  A   L    EA +   + L+ E N+  +      +
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 22/108 (20%), Positives = 48/108 (44%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           V L  +    Y+    AL  +  +++A+  + + ++ + N  +    L
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 34/309 (11%), Positives = 79/309 (25%), Gaps = 75/309 (24%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-----MYPEALIGRGTARAFQR 429
           +  ++  +F   R    +N+G    A  +    L+E P         A    G     + 
Sbjct: 6   REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65

Query: 430 ELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--- 480
           EL  +++   +  Q          A  +  ++ +   A G    A +   KA +      
Sbjct: 66  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125

Query: 481 -----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------------------ 517
                    ++  R  + + +   + A     + +++    +                  
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 518 ----------------------------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                                       +A     +     G+   A        + +  
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245

Query: 550 FLEA----WGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLG 599
                   W ++ +    L   E A   L+++    +         +   L   L    G
Sbjct: 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 600 QHKKAIKDL 608
           +   A + L
Sbjct: 306 RKSDAQRVL 314

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (108), Expect = 8e-06
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 19/228 (8%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNF 494
           + I+ +    E    R Q     G   EA +    ALE  P              G V  
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 495 KFKDFNAAVEDLSACVKLDKENKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              +   ++  +    ++ +++        +       L + G  + A E   KA QL  
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 549 NFL--------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
                             Q     A  ++A    +  + +   +     L+ L +     
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182

Query: 601 HKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLK 648
             +   D +      + +L+ N     +   NA          T    
Sbjct: 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 230

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 24/187 (12%), Positives = 43/187 (22%), Gaps = 38/187 (20%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRR 455
             ++             A   R        +  AA +      +    +N      W+  
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
            +A+  LGE   A   L +  E   +   +                              
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-------------------------- 291

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEK 569
                  L       G    A+   L A++L        +F+     + Q  + L     
Sbjct: 292 --RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 349

Query: 570 ALECLQQ 576
             E  Q 
Sbjct: 350 LPELEQH 356

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---- 522
                L          ++    R I      D  AA   L    K +  N          
Sbjct: 197 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256

Query: 523 LGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
           +  A   +GE++ AE    +        +L  +       L Q Y        A   L  
Sbjct: 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316

Query: 577 VLYIDKR 583
            L +  R
Sbjct: 317 ALKLANR 323

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-------YTYLGLALSSIGEYK 534
           +A+   E G V +   D+      +   ++   E + +         YL  A+   G+  
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           KA     K ++LD     A G+L  F   +A
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 19/158 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G      GKY  A+  + +                                 E+  S  
Sbjct: 21  KGTVYFKGGKYVQAVIQYGK-------------------IVSWLEMEYGLSEKESKASES 61

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+         L E  +A++   KAL  +  +   L+ RG       +F +A  D 
Sbjct: 62  FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
              ++++ +NK+A   + +      E+ + +      +
Sbjct: 122 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEF---------------EPNSADILHERGIVNF 494
              K +G      G+ V+A+    K + +               E           +   
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           K +++  AVE     + LD  N+      G A   + E++ A+    K ++++     A 
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 555 GHLTQFYQDLANSEKA 570
             +    +      + 
Sbjct: 136 LQIFMCQKKAKEHNER 151

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 15/141 (10%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACV---------------KLDKENKSAYTYLGLAL 527
           + I+ ERG V FK   +  A+      V               K      +++  L +  
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72

Query: 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
             +  +  A E+  KA++LD N  +      + +  + + E A    Q+VL +      A
Sbjct: 73  LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132

Query: 588 YHLRGLLLHGLGQHKKAIKDL 608
                +    + +     K L
Sbjct: 133 KTQLAVCQQRIRRQLAREKKL 153

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQI---------------LKEDPMYPEALIGRGTARAFQREL 431
           RG     EGKY  A+  + +I                K   +   + +         +  
Sbjct: 19  RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 78

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 79  SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138

Query: 492 VNFKFKDFNAAVEDL 506
              + +   A  + L
Sbjct: 139 CQQRIRRQLAREKKL 153

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 15/144 (10%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEA---------------IQSNPSAGEAWKRRGQARA 460
             +  RGT    + + + A+  + +                 ++      +         
Sbjct: 14  TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 73

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
            L     AI+  +KALE + N+   L  RG  +    DF  A  D    ++L   NK+A 
Sbjct: 74  KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133

Query: 521 TYLGLALSSIGEYKKAEEAHLKAI 544
           T L +    I      E+     +
Sbjct: 134 TQLAVCQQRIRRQLAREKKLYANM 157

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 16/132 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQI----------------LKEDPMYPEALIGRGTARAFQRE 430
            G        +  AI  + ++                 K  P+    ++  G  +    +
Sbjct: 33  IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E  
Sbjct: 93  WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152

Query: 491 IVNFKFKDFNAA 502
            V  K K     
Sbjct: 153 KVKQKIKAQKDK 164

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQ----------------ILKEDPMYPEALIGRGTARAFQRE 430
            G     + +   AI  + +                + K+  +     +   T     ++
Sbjct: 23  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 82

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
              AI   ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   
Sbjct: 83  YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 142

Query: 491 IVNFKFKDFN 500
           +   K K+  
Sbjct: 143 LCVNKLKEAR 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	741
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	100.0
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.95
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.94
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.93
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.91
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.77
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.76
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.73
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.7
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.69
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.69
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.66
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.53
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.13
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.12
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.07
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.92
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.33
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.08
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.62
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.47
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.13
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.02
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	80.25

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=293.86  Aligned_cols=383  Identities=16%  Similarity=0.125  Sum_probs=274.3

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             9999992189999999999998043-772459879999996024999999999999849997459999999999869999
Q 004622           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (741)
Q Consensus        42 ~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  120 (741)
                      .+..+|+.|+|++|+..|+++++.+ .++..+..+|.+|.++|++++|+..++++++++|+++.+++.+|.++..+|+++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999986999999999999998689989999999999998699999999999999859998999999999964200022


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf             99999999997459995999999999999999730000013667677541012111235668530122101588753455
Q 004622          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS  200 (741)
Q Consensus       121 ~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  200 (741)
                      +|+..+..++..+|.... ...........                                                  
T Consensus        85 ~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------------------------------------------  113 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDFID-GYINLAAALVA--------------------------------------------------  113 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHH-HHHHHHHHHHH--------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCC-CCCCCCCCCCC--------------------------------------------------
T ss_conf             222222212112222222-22222222222--------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77775420001267899898778742214999888434565567641000135999989998877777522236689986
Q 004622          201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD  280 (741)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (741)
                                                                                                      
T Consensus       114 --------------------------------------------------------------------------------  113 (388)
T d1w3ba_         114 --------------------------------------------------------------------------------  113 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHH
Q ss_conf             65578987776542222456788647898524478724991048999998650079980069999999971330899789
Q 004622          281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN  360 (741)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~  360 (741)
                                                           ...+..+...........                         
T Consensus       114 -------------------------------------~~~~~~~~~~~~~~~~~~-------------------------  131 (388)
T d1w3ba_         114 -------------------------------------AGDMEGAVQAYVSALQYN-------------------------  131 (388)
T ss_dssp             -------------------------------------HSCSSHHHHHHHHHHHHC-------------------------
T ss_pred             -------------------------------------CCCCCCCCCCCCCCCCCC-------------------------
T ss_conf             -------------------------------------222222222211122222-------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99975889998731048853999999999999819999999999999996999899999999999982369999999999
Q 004622          361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE  440 (741)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  440 (741)
                                       +.........+......+....+...+.+.+...|..+.++..+|.++...+++++|...+.+
T Consensus       132 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  194 (388)
T d1w3ba_         132 -----------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             -----------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             -----------------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             -----------------222222222222221100013567888874025861068998636301024719999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             99819990999999999999839919999999999821999999999999999975999999999999997178999999
Q 004622          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (741)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  520 (741)
                      ++..+|++..++..+|.++...|++++|+..+.++....|.....+..+|.++...|++++|+..++++++.+|+++.++
T Consensus       195 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  274 (388)
T d1w3ba_         195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99849464999999715522005299999999985777554799999999999987899999999999998499989999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999999819999999999999971804099999999999991892999999999993185529999999999998899
Q 004622          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (741)
Q Consensus       521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  600 (741)
                      ..+|.++...|++++|+..++.++...|.....+..++.++...|++++|+..++++++..|+++.++..+|.++...|+
T Consensus       275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  354 (388)
T d1w3ba_         275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999999748799999999865404873001015799999987899999999999998688989999999999998599


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             599999999846304984389999999999985989
Q 004622          601 HKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPF  636 (741)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~  636 (741)
                      +++|+..|+++++++|++ ... +..+|.++..+||
T Consensus       355 ~~~A~~~~~~al~l~P~~-~~a-~~~lg~~~~~~~D  388 (388)
T d1w3ba_         355 LQEALMHYKEAIRISPTF-ADA-YSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTCTTC-HHH-HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHCCCC-HHH-HHHHHHHHHHCCC
T ss_conf             999999999999709998-999-9999999998589

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=293.05  Aligned_cols=383  Identities=16%  Similarity=0.114  Sum_probs=337.3

Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             87999999602499999999999984999745999999999986999999999999997459995999999999999999
Q 004622           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA  152 (741)
Q Consensus        73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  152 (741)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++.. +            
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-a------------   69 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE-A------------   69 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-H------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-H------------
T ss_conf             999999998699999999999999868998999999999999869999999999999985999899-9------------


Q ss_pred             HHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             73000001366767754101211123566853012210158875345577775420001267899898778742214999
Q 004622          153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGS  232 (741)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (741)
                                                                                                      
T Consensus        70 --------------------------------------------------------------------------------   69 (388)
T d1w3ba_          70 --------------------------------------------------------------------------------   69 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             88843456556764100013599998999887777752223668998665578987776542222456788647898524
Q 004622          233 SVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLS  312 (741)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg  312 (741)
                                                                                                 +..+|
T Consensus        70 ---------------------------------------------------------------------------~~~l~   74 (388)
T d1w3ba_          70 ---------------------------------------------------------------------------YSNLG   74 (388)
T ss_dssp             ---------------------------------------------------------------------------HHHHH
T ss_pred             ---------------------------------------------------------------------------HHHHH
T ss_conf             ---------------------------------------------------------------------------99999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             47872499104899999865007998006999999997133089978999975889998731048853999999999999
Q 004622          313 SDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV  392 (741)
Q Consensus       313 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  392 (741)
                      ..+...|++++|+..+..+....|....                                          .....+....
T Consensus        75 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~  112 (388)
T d1w3ba_          75 NVYKERGQLQEAIEHYRHALRLKPDFID------------------------------------------GYINLAAALV  112 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCC------------------------------------------CCCCCCCCCC
T ss_conf             9964200022222222212112222222------------------------------------------2222222222


Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             81999999999999999699989999999999998236999999999999819990999999999999839919999999
Q 004622          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (741)
Q Consensus       393 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  472 (741)
                      ..+.+..+...........+.........+......+....+...+.+.+...|....++..+|..+...|++++|...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  192 (388)
T d1w3ba_         113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF  192 (388)
T ss_dssp             HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             22222222222111222222222222222222211000135678888740258610689986363010247199999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99982199999999999999997599999999999999717899999999999999819999999999999971804099
Q 004622          473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (741)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  552 (741)
                      .+++..+|++..++..+|.++...|++++|+..+.++....|.....+..+|.++...|++++|+..++++++.+|+++.
T Consensus       193 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  272 (388)
T d1w3ba_         193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD  272 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             99998494649999997155220052999999999857775547999999999999878999999999999984999899


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999189299999999999318552999999999999889959999999984630498438999999999998
Q 004622          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFN  632 (741)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~  632 (741)
                      ++..+|.++...|++.+|+..++.++...|.....+..++.++...|++++|+..|+++++.+|++ ... +..+|.++.
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~-~~~la~~~~  350 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAA-HSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHH-HHHHHHHHH
T ss_conf             999999999974879999999986540487300101579999998789999999999999868898-999-999999999


Q ss_pred             HCCCHHHHHHHHHHHCCCCC---CCCHHHHHHHHCCCC
Q ss_conf             59898999998884015775---211036898710899
Q 004622          633 AWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSR  667 (741)
Q Consensus       633 ~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~  667 (741)
                      ..|++++|+.+++......|   .++..||.++...|+
T Consensus       351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             85999999999999997099989999999999998589

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-31  Score=200.30  Aligned_cols=235  Identities=20%  Similarity=0.246  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999981999999999999999699989999999999998236999999999999819990999999999999839
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (741)
                      .+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|++...+..+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999985999999999999998689989999999999998377588999998510022222222222222222222


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHH---------------HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHH
Q ss_conf             91999999999982199999999---------------999999997599999999999999717899--9999999999
Q 004622          464 ESVEAIQDLSKALEFEPNSADIL---------------HERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLA  526 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~---------------~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~  526 (741)
                      ++++|+..+.+++...|......               ......+...+.+.+|+..+.+++..+|..  +.++..+|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             11211100026777361067888766400000001000014788887657999999999999971301222111036888


Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99819999999999999971804099999999999991892999999999993185529999999999998899599999
Q 004622          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (741)
Q Consensus       527 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  606 (741)
                      +...|++++|+..+++++...|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             88888775500211122222222211101333012211110137888778998843249999999999998789999999


Q ss_pred             HHHHHHHHCCCC
Q ss_conf             999846304984
Q 004622          607 DLSSGSRTMMPH  618 (741)
Q Consensus       607 ~~~~al~~~p~~  618 (741)
                      .|+++++++|.+
T Consensus       262 ~~~~al~l~p~~  273 (323)
T d1fcha_         262 HFLEALNMQRKS  273 (323)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999709757

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-30  Score=193.46  Aligned_cols=97  Identities=11%  Similarity=0.083  Sum_probs=73.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             9999992189999999999998043-772459879999996024999999999999849997459999999999869999
Q 004622           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (741)
Q Consensus        42 ~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  120 (741)
                      ++..+++.|+|++|+..|+++++.+ .++..+.++|.++...|++++|+..+++++.++|++..+++.+|.++..+|+++
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999985999999999999998689989999999999998377588999998510022222222222222222222112


Q ss_pred             HHHHHHHHHHHHCCCCHH
Q ss_conf             999999999974599959
Q 004622          121 EALSVWEKGYEHALHQSA  138 (741)
Q Consensus       121 ~A~~~~~~al~l~p~~~~  138 (741)
                      +|+..+++++.+.|....
T Consensus       105 ~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGG
T ss_pred             CCCCCHHHHHHHCCCHHH
T ss_conf             111000267773610678

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-26  Score=169.84  Aligned_cols=234  Identities=15%  Similarity=0.126  Sum_probs=182.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             8539999999999998199999999999999969998999999999999823-699999999999981999099999999
Q 004622          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la  456 (741)
                      |...+++..+|.++...+.+++|+..+++++..+|.+..+|..+|.++...+ ++++|+..+.++++.+|++..+|..+|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77999999999999958866999999999998798876999999999998376799999999999988774226898875


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC----
Q ss_conf             9999839919999999999821999999999999999975999999999999997178999999999999998199----
Q 004622          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE----  532 (741)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----  532 (741)
                      .++...|++++|+..+.++++++|.+..+|..+|.++...|++++|+..++++++.+|.+..+|..+|.++...+.    
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf             88885053788998875554321004688998877888888667899999999987974499998899999874563102


Q ss_pred             --HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHC--CCHHHHHH
Q ss_conf             --999999999999718040999999999999918929999999999931855--299999999999988--99599999
Q 004622          533 --YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGL--GQHKKAIK  606 (741)
Q Consensus       533 --~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~--g~~~~A~~  606 (741)
                        +++|+..+.+++..+|.+..+|..++.++... ...++...+..++.+.|.  ++.++..++.++...  +..+.+..
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             3547767999999984988569999987798862-718899999999972877578999999999999998358787999


Q ss_pred             HHHHHH
Q ss_conf             999846
Q 004622          607 DLSSGS  612 (741)
Q Consensus       607 ~~~~al  612 (741)
                      .+++++
T Consensus       279 ~~~ka~  284 (315)
T d2h6fa1         279 ILNKAL  284 (315)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-26  Score=170.48  Aligned_cols=185  Identities=15%  Similarity=0.167  Sum_probs=113.8

Q ss_pred             CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             8853999999999999819-999999999999996999899999999999982369999999999998199909999999
Q 004622          377 KSISVDFRLSRGIAQVNEG-KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (741)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  455 (741)
                      +|.+..+|..+|.++...| ++++|+..+++++..+|++..+|..+|.++..+|++++|+..+.++++.+|.+..+|..+
T Consensus        73 nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~  152 (315)
T d2h6fa1          73 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  152 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             98876999999999998376799999999999988774226898875888850537889988755543210046889988


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999983991999999999982199999999999999997599------9999999999997178999999999999998
Q 004622          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD------FNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (741)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  529 (741)
                      |.++...|++++|+..++++++++|.+..+|..+|.++...+.      +++|+..+.+++..+|.+..+|..++.++..
T Consensus       153 ~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~  232 (315)
T d2h6fa1         153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD  232 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             77888888667899999999987974499998899999874563102354776799999998498856999998779886


Q ss_pred             CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHH
Q ss_conf             199999999999999718040--999999999999
Q 004622          530 IGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQ  562 (741)
Q Consensus       530 ~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~  562 (741)
                      .+ ..++...+..+++..|..  +..+..++.++.
T Consensus       233 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         233 RG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             TC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             27-18899999999972877578999999999999

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=3.6e-27  Score=176.53  Aligned_cols=279  Identities=9%  Similarity=-0.091  Sum_probs=231.8

Q ss_pred             HCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             24991048999998650079980069999999971330899789999758899987310488539999999999998199
Q 004622          317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK  396 (741)
Q Consensus       317 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~  396 (741)
                      ..+..++|+..+++++..+|++..++..++.++...+.                                .+..+...|.
T Consensus        41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~--------------------------------~~~~~~~~~~   88 (334)
T d1dcea1          41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLET--------------------------------EKSPEESAAL   88 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT--------------------------------TSCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--------------------------------HCCHHHHHHH
T ss_conf             56566999999999999887858999999999999765--------------------------------0034778778


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHHHHH
Q ss_conf             9999999999999699989999999999998236--9999999999998199909999-999999998399199999999
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--LEAAISDFTEAIQSNPSAGEAW-KRRGQARAALGESVEAIQDLS  473 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~  473 (741)
                      +.+|+.++++++..+|+++.+|..+|.++...++  +++|+..+.+++..+|.+..++ ...|.++...+.+++|+..++
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~  168 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999999986888679898864899884304289999999999855921211110578999874455289999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             99821999999999999999975999999999999997178999999999999998199999999999999718040999
Q 004622          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA  553 (741)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  553 (741)
                      +++..+|.+..++..+|.++...|++++|+..+.+++...|......    ..+...+..+++...+.+++...|.....
T Consensus       169 ~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~  244 (334)
T d1dcea1         169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFR  244 (334)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSS
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf             98871898799999999999982688989998877677689999999----99988244148899999887718660567


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999991892999999999993185529999999999998899599999999846304984389999999999985
Q 004622          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNA  633 (741)
Q Consensus       554 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~  633 (741)
                      +..++.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|.+ ... |..++..+..
T Consensus       245 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~-~~y-~~~L~~~~~~  322 (334)
T d1dcea1         245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAY-LDDLRSKFLL  322 (334)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHH-HHHHHHHHHH
T ss_conf             88799999998669999999998876291379999999999987899999999999999879663-999-9999999867

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.4e-25  Score=164.63  Aligned_cols=250  Identities=12%  Similarity=0.020  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--
Q ss_conf             99999999999996999899999999999982----------369999999999998199909999999999998399--
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQ----------RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--  464 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--  464 (741)
                      .++|+.++++++..+|++..+|..++.++...          +++.+|+.+++++++.+|++..+|..+|.++...++  
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             69999999999998878589999999999997650034778778999999999999868886798988648998843042


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             1999999999982199999999-999999997599999999999999717899999999999999819999999999999
Q 004622          465 SVEAIQDLSKALEFEPNSADIL-HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (741)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  543 (741)
                      +++|+..+.+++..+|.+...+ ...|.++...+.+++|+..+++++..+|.+..++..+|.++..+|++++|+..+.++
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~  204 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP  204 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             89999999999855921211110578999874455289999999988718987999999999999826889899988776


Q ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             97180409999999999999189299999999999318552999999999999889959999999984630498438999
Q 004622          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNL  623 (741)
Q Consensus       544 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (741)
                      +...|.....+..    +...+...++...+.+++...|.....+..++.++...+++.+|+..+.+++..+|.+ ... 
T Consensus       205 ~~~~~~~~~~~~~----~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~-  278 (334)
T d1dcea1         205 ENVLLKELELVQN----AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC-LLT-  278 (334)
T ss_dssp             HHHHHHHHHHHHH----HHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHH-
T ss_pred             HHHHHHHHHHHHH----HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHH-
T ss_conf             7768999999999----9882441488999998877186605678879999999866999999999887629137-999-


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             99999999859898999998884015775
Q 004622          624 TRWRNLCFNAWPFIRRRLLCTRLLKSTVS  652 (741)
Q Consensus       624 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~  652 (741)
                      +..+|.++...|++++|+.+++.+...+|
T Consensus       279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         279 IILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999878999999999999998796

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.2e-23  Score=150.95  Aligned_cols=203  Identities=19%  Similarity=0.097  Sum_probs=107.7

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             53999999999999819999999999999996999899999999999982369999999999998199909999999999
Q 004622          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (741)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (741)
                      ..+.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  114 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999879999999999985434999889996004278887778875234468999876111158889999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HCCCHH
Q ss_conf             9983991999999999982199999999999999997599999999999999717899999999999999----819999
Q 004622          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS----SIGEYK  534 (741)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~~~~~  534 (741)
                      +...|++++|+..++++++..|.+......++..+...+....+...........+.....  .+...+.    ..+..+
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLME  192 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf             9987667999999999986530007888999999988535878999998764031444345--57788888877777899


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999718040999999999999918929999999999931855
Q 004622          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (741)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  583 (741)
                      .+...+.......|....+++.+|.++...|++++|+..|++++..+|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  241 (259)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             9999999866408450999999999999878999999999999983997

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7.4e-21  Score=138.45  Aligned_cols=230  Identities=14%  Similarity=0.043  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHH
Q ss_conf             99999999998199999999999999969998-----999999999999823699999999999981999------0999
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEA  451 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~  451 (741)
                      +...+|.+++..|++++|+..+++++...|.+     ..++..+|.++...|++++|+..+++++...+.      ....
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             99999999998889999999999998548689967999999999999998799999999999999998750114899999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----HH
Q ss_conf             999999999839919999999999821999--------99999999999997599999999999999717899-----99
Q 004622          452 WKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KS  518 (741)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~  518 (741)
                      +..++.++...|++..+...+.+++...+.        ....+..+|.++...|+++.+...+.++....+..     ..
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98887887888889999988999999867503412567888998887899981456666899999888766300246899


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHH
Q ss_conf             999999999981999999999999997180-------409999999999999189299999999999318552----999
Q 004622          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKA  587 (741)
Q Consensus       519 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~  587 (741)
                      .+...+..+...+++..+...+.++....+       .....+..++.++...+++++|...+.+++...+.+    ...
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             99888888876466788889999999999873115726999999999999860448989999999997622466677788


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9999999998899599999999846
Q 004622          588 YHLRGLLLHGLGQHKKAIKDLSSGS  612 (741)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al  612 (741)
                      +..+|.++...|++++|...+++++
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al  278 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELN  278 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999999987587999999999999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.2e-22  Score=149.36  Aligned_cols=226  Identities=18%  Similarity=0.179  Sum_probs=184.0

Q ss_pred             CCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             999999999999999699----9899999999999982369999999999998199909999999999998399199999
Q 004622          395 GKYASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (741)
Q Consensus       395 g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  470 (741)
                      .+.+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHH
T ss_conf             79999999999998763369999999999999999987999999999998543499988999600427888777887523


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99999821999999999999999975999999999999997178999999999999998199999999999999718040
Q 004622          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (741)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  550 (741)
                      .|+++++++|+++.++..+|.++...|++++|+..++++++.+|.+......++.+....+....+...........+..
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             44689998761111588899999987667999999999986530007888999999988535878999998764031444


Q ss_pred             HHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             999999999999----918929999999999931855299999999999988995999999998463049843899
Q 004622          551 LEAWGHLTQFYQ----DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWN  622 (741)
Q Consensus       551 ~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (741)
                      .. + .+...+.    ..+....+...+.......|....+++.+|.++...|++++|+.+|++++..+|.+..+.
T Consensus       173 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         173 WG-W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             TH-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             HH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             34-5-57788888877777899999999986640845099999999999987899999999999998399779999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.8e-20  Score=131.96  Aligned_cols=62  Identities=18%  Similarity=0.024  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             98799999960249999999999998499974-----599999999998699999999999999745
Q 004622           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-----QAYILKGCAFSALGRKEEALSVWEKGYEHA  133 (741)
Q Consensus        72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  133 (741)
                      ...+|.+++..|++++|+..+++++...|++.     .++..+|.++..+|++++|+..|++++.+.
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   81 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA   81 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             9999999998889999999999998548689967999999999999998799999999999999998

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=136.52  Aligned_cols=136  Identities=9%  Similarity=-0.076  Sum_probs=81.5

Q ss_pred             HCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             24991048999998650079980069999999971330899789999758899987310488539999999999998199
Q 004622          317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK  396 (741)
Q Consensus       317 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~  396 (741)
                      ..+.|+.|+..+.+++..+|.+...+..++..+...++..++........        ..  ....+++.+|..+...++
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--------~~--~~~~~~~~LG~l~~~~~~  167 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--------SY--ICQHCLVHLGDIARYRNQ  167 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------CCHHH--------HH--HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------CC--CHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999878991139999985799875899999999999882--------78--899999999999998024


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             999999999999969998999999999999823699999999999981999099999999999983
Q 004622          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (741)
Q Consensus       397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (741)
                      +++|+.+|++++..+|++..++..+|.++...|++.+|+.+|.+++...|..+.++.+++..+...
T Consensus       168 ~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             789999999999878996599999999999869999999999999817999789999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.1e-16  Score=113.25  Aligned_cols=221  Identities=8%  Similarity=-0.041  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHC
Q ss_conf             99999999999969998999999999999823--------------699999999999981-999099999999999983
Q 004622          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQR--------------ELEAAISDFTEAIQS-NPSAGEAWKRRGQARAAL  462 (741)
Q Consensus       398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------------~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~  462 (741)
                      ..+...|++++...|.++..|...+......+              ..++|...+++++.. .|.....|...+......
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~  112 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf             99999999999877799999999999998707368877787631024599999999999874998799999999999861


Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHH
Q ss_conf             991999999999982199999-999999999997599999999999999717899999999999999-819999999999
Q 004622          463 GESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS-SIGEYKKAEEAH  540 (741)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~  540 (741)
                      |+++.|...+++++...|.+. .+|..++......++++.|...|.+++...|.+...+...+.... ..|+.+.|...|
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~  192 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             33899999999999871578699999999999982786889999999998088867999999999987655778999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             99997180409999999999999189299999999999318552----99999999999988995999999998463049
Q 004622          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       541 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (741)
                      ++++...|.++..|...+......|+++.|...|++++...|.+    ...|..........|+.+.+...++++.+..|
T Consensus       193 e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99998610038899999999998698689999999999827898689999999999999984999999999999998771


Q ss_pred             CC
Q ss_conf             84
Q 004622          617 PH  618 (741)
Q Consensus       617 ~~  618 (741)
                      ..
T Consensus       273 ~~  274 (308)
T d2onda1         273 EE  274 (308)
T ss_dssp             TT
T ss_pred             CC
T ss_conf             10

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.9e-16  Score=111.85  Aligned_cols=131  Identities=13%  Similarity=0.014  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC------CHH
Q ss_conf             9999999997599999999999999717899------9999999999998-19999999999999971804------099
Q 004622          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSS-IGEYKKAEEAHLKAIQLDRN------FLE  552 (741)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~------~~~  552 (741)
                      +..+|.+|...|++++|+.++++++...+..      ..++..+|.++.. .|++++|+..+++++.+.+.      ...
T Consensus        80 ~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~  159 (290)
T d1qqea_          80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK  159 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999999980885888999997667765325320589999998886764787899998899999999873376033346


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999999999189299999999999318552-------99999999999988995999999998463049
Q 004622          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (741)
                      ++..+|.++...|++++|+..|++++...+..       ...+...+.++...+++..|...++++.+.+|
T Consensus       160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             88999999998173999999999999868133245556999999999999984659999999999997597

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4e-19  Score=127.99  Aligned_cols=139  Identities=10%  Similarity=0.020  Sum_probs=96.9

Q ss_pred             HHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             97133089978999975889998731048853999999999999819999999999999996999899999999999982
Q 004622          349 SFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ  428 (741)
Q Consensus       349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  428 (741)
                      ....+.|..++.        .+.......+.....+..+|..+...|++..|+..+.+++..++  ..++..+|.++...
T Consensus        96 ~~a~~~Y~~ai~--------~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~  165 (497)
T d1ya0a1          96 EAASGFYTQLLQ--------ELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYR  165 (497)
T ss_dssp             HHHHHHHHHHHH--------HHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH--------HHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHC
T ss_conf             999999999999--------99998789911399999857998758999999999998827889--99999999999980


Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             369999999999998199909999999999998399199999999998219999999999999999759
Q 004622          429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (741)
Q Consensus       429 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (741)
                      +++++|+.+|.+++.++|+++..+..+|.++...|+..+|+.+|.+++...|..+.++.+++.++....
T Consensus       166 ~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             247899999999998789965999999999998699999999999998179997899999999998753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=5.8e-17  Score=114.95  Aligned_cols=205  Identities=12%  Similarity=0.005  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999999981999999999999999699------989999999999998236999999999999819990999999999
Q 004622          384 RLSRGIAQVNEGKYASAISIFDQILKEDP------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (741)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (741)
                      +...|..+...+++++|+..|.+++...+      ....++..+|.+|...|++++|+..+++++.+.+...        
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--------  111 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--------  111 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--------
T ss_conf             999999999886999999999999999987599889999999999999980885888999997667765325--------


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHC
Q ss_conf             99983991999999999982199999999999999997-599999999999999717899------99999999999981
Q 004622          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSI  530 (741)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~  530 (741)
                            ++..              ...++..+|.++.. .|++++|+..+++++.+.+..      ..++..+|.++..+
T Consensus       112 ------~~~~--------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~  171 (290)
T d1qqea_         112 ------QFRR--------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD  171 (290)
T ss_dssp             ------CHHH--------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ------CCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf             ------3205--------------89999998886764787899998899999999873376033346889999999981


Q ss_pred             CCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHH-
Q ss_conf             99999999999999718040-------999999999999918929999999999931855299-----99999999998-
Q 004622          531 GEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK-----AYHLRGLLLHG-  597 (741)
Q Consensus       531 ~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~-  597 (741)
                      |++++|+..|++++...+..       ...+...+.++...+++..|...++++...+|....     ....+...+.. 
T Consensus       172 g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~  251 (290)
T d1qqea_         172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG  251 (290)
T ss_dssp             TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             73999999999999868133245556999999999999984659999999999997597744439999999999999836


Q ss_pred             -CCCHHHHHHHHHHHHHHCC
Q ss_conf             -8995999999998463049
Q 004622          598 -LGQHKKAIKDLSSGSRTMM  616 (741)
Q Consensus       598 -~g~~~~A~~~~~~al~~~p  616 (741)
                       .+.+++|+..|.++.+++|
T Consensus       252 d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         252 DSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             CTTTHHHHHHHHTTSSCCCH
T ss_pred             CHHHHHHHHHHHHHHHHCCH
T ss_conf             89999999999988754689

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.9e-15  Score=104.75  Aligned_cols=235  Identities=9%  Similarity=-0.013  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             04899999865007998006999999997133089978999975889998731048853999999999999819999999
Q 004622          322 NTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAI  401 (741)
Q Consensus       322 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~  401 (741)
                      +.+...|++++...|.++..+...+..+...++...                            ..+......+..++|.
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~a~   84 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA----------------------------EKGDMNNAKLFSDEAA   84 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----------------------------HTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH----------------------------HHHHHHHCCCCHHHHH
T ss_conf             999999999998777999999999999987073688----------------------------7778763102459999


Q ss_pred             HHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             999999996-999899999999999982369999999999998199909-999999999998399199999999998219
Q 004622          402 SIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAALGESVEAIQDLSKALEFE  479 (741)
Q Consensus       402 ~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~  479 (741)
                      ..|++++.. .|.+...|...+......|+++.|...+.+++...|.+. .+|...+......|+++.|...+.+++...
T Consensus        85 ~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~  164 (308)
T d2onda1          85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA  164 (308)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             99999998749987999999999998613389999999999987157869999999999998278688999999999808


Q ss_pred             CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHH
Q ss_conf             999999999999999-75999999999999997178999999999999998199999999999999718040----9999
Q 004622          480 PNSADILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAW  554 (741)
Q Consensus       480 p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~  554 (741)
                      |.+...+...+.... ..|+.+.|...+++++...|.++..+...+......|+++.|...|++++...|.+    ...|
T Consensus       165 ~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw  244 (308)
T d2onda1         165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW  244 (308)
T ss_dssp             TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             88679999999999876557789999999999861003889999999999869868999999999982789868999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999189299999999999318552
Q 004622          555 GHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (741)
Q Consensus       555 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~  584 (741)
                      ..........|+.+.+...++++.+..|..
T Consensus       245 ~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         245 ARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             999999998499999999999999877110

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.4e-18  Score=122.43  Aligned_cols=105  Identities=22%  Similarity=0.329  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             973999999999992189999999999998043-7724598799999960249999999999998499974599999999
Q 004622           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (741)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~  112 (741)
                      |++..-+-+|+.+|+.|+|++|+..|++||+++ .++..|.++|.||.++|+|++|+..|++++.++|+++.+++.+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             64999999999999869999999999999985999899998178987410000012478888887188738999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99869999999999999974599959
Q 004622          113 FSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      |..+|++++|+..|++++.++|++..
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             99879999999999999874955679

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-16  Score=111.33  Aligned_cols=116  Identities=17%  Similarity=0.229  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             73999999999992189999999999998043-77245987999999602499999999999984999745999999999
Q 004622           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (741)
Q Consensus        35 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  113 (741)
                      .+...+.+++.+|+.|+|++|+..|+++++++ .+...|.++|.+++.+|++++|+..|+++++++|+++.+++.+|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999999999999589999999866021100011333245678887405421288889999987544668779999999


Q ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             98699999999999999745999599999999999999
Q 004622          114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       114 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      ..+|++++|+..|++++.++|++.. +...+..+....
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~-~~~~l~~~~~~~  125 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIV  125 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHH
T ss_conf             9949999999989999872999799-999999999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.73  E-value=2.8e-16  Score=110.88  Aligned_cols=117  Identities=21%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-C----------------HHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             9739999999999921899999999999980437-7----------------2459879999996024999999999999
Q 004622           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-E----------------IQDICNRAFCYSQLELHKHVIRDCDKAL   96 (741)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~-~----------------~~~~~~~a~~~~~~g~~~~A~~~~~~al   96 (741)
                      ..+..-+.+|+.+|+.|+|.+|+..|++|+..-+ .                ...+.|+|.||+++|++++|+.+|++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf             99999999999999959999999999987760730011105778876310788999619999998465301110100010


Q ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             8499974599999999998699999999999999745999599999999999999
Q 004622           97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus        97 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      .++|+++++++++|.++..+|++++|+..|+++++++|++.. +...+..+....
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~-~~~~l~~~~~kl  148 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD-IRNSYELCVNKL  148 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHH
T ss_conf             000000124677689999968999999999999982989899-999999999999

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-16  Score=111.38  Aligned_cols=108  Identities=24%  Similarity=0.251  Sum_probs=99.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             999999992189999999999998043-7724598799999960249999999999998499974599999999998699
Q 004622           40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (741)
Q Consensus        40 ~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  118 (741)
                      +.+++.+|..|+|++|+..|+++|..+ .++..|.++|.+|..+|++++|+..++++++++|+++.+++.+|.++..+|+
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999969999999999998861996013430001101100001121001346777402202677889999998127


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999999999745999599999999999
Q 004622          119 KEEALSVWEKGYEHALHQSADLKQFLELEE  148 (741)
Q Consensus       119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  148 (741)
                      +++|+..|+++++++|+++. +...+..+.
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~-~~~~l~~l~  115 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQ-LKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHH-HHHHHHHHH
T ss_conf             99999999999984989899-999999783

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.8e-16  Score=108.51  Aligned_cols=116  Identities=19%  Similarity=0.177  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-C---------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             739999999999921899999999999980437-7---------------245987999999602499999999999984
Q 004622           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSY-E---------------IQDICNRAFCYSQLELHKHVIRDCDKALQL   98 (741)
Q Consensus        35 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~-~---------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   98 (741)
                      .+...+..++.+|..|+|+.|+..|+++|...+ .               ...+.|+|.||+++|+|++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
T ss_conf             99999999999999699999999999998875101000357776406467999999999988642110110000000100


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99974599999999998699999999999999745999599999999999999
Q 004622           99 DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus        99 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      +|+++.+++++|.++..+|++++|+..|+++++++|+++. +...+..+....
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~-~~~~l~~~~~~~  143 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA-AKTQLAVCQQRI  143 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHH
T ss_conf             2231034677799998722299999999999972989899-999999999999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-15  Score=104.54  Aligned_cols=94  Identities=14%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             99999992189999999999998043772459879999996024999999999999849997459999999999869999
Q 004622           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (741)
Q Consensus        41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~  120 (741)
                      -++..++..|+|+.|++.|+++  .++++..++|+|.+|..+|++++|+..|+++++++|+++.+++.+|.++..+|+++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             9999999877999999999864--89889999999999998589146787899999985523466788999998542499


Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             9999999999745999
Q 004622          121 EALSVWEKGYEHALHQ  136 (741)
Q Consensus       121 ~A~~~~~~al~l~p~~  136 (741)
                      +|+..|++++...|.+
T Consensus        88 ~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999999867267

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.4e-15  Score=106.55  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------------C-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
Q ss_conf             99999999999218999999999999804----------------3-772459879999996024999999999999849
Q 004622           37 ITARIELAKLCSLRNWSKAIRILDSLLAQ----------------S-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (741)
Q Consensus        37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~----------------~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~   99 (741)
                      ...+..+..+|..|+|.+|+..|++++..                + .....+.++|.||.++|+|++|+..|+++++++
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999999908899999999999874111166665577877190239999989999986402101366655443100


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9974599999999998699999999999999745999599999999999999
Q 004622          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       100 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      |+++.+++++|.+|..+|++++|+..|+++++++|++.. +...+..+....
T Consensus       108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~-~~~~l~~~~~~l  158 (169)
T d1ihga1         108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA-IQAELLKVKQKI  158 (169)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHH
T ss_conf             022367776999999804799999999999985989999-999999999999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.5e-15  Score=103.55  Aligned_cols=32  Identities=13%  Similarity=0.046  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999889959999999984630498
Q 004622          586 KAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP  617 (741)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (741)
                      .+++++|.++..+|++++|++.+.+++.+.|+
T Consensus       121 e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         121 EVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             89999999999978999999999999836998

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.69  E-value=1.3e-15  Score=106.91  Aligned_cols=115  Identities=19%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-C---------------CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
Q ss_conf             3999999999992189999999999998043-7---------------72459879999996024999999999999849
Q 004622           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-Y---------------EIQDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (741)
Q Consensus        36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~   99 (741)
                      +...+-.++.+|..|+|..|+..|++|+..- .               ....+.|+|.||.++|+|.+|+.+|++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             99999999999995999999999999999998750012455531064679999849999877622011000223222013


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9974599999999998699999999999999745999599999999999999
Q 004622          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (741)
Q Consensus       100 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  151 (741)
                      |+++++++++|.++..+|++++|+..|++++.++|++.. +...+..+....
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~-~~~~l~~~~~~~  145 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA-ARLQIFMCQKKA  145 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHH
T ss_conf             104889998899998827899999999999985989899-999999999999

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.68  E-value=5.4e-13  Score=91.03  Aligned_cols=227  Identities=18%  Similarity=0.140  Sum_probs=178.3

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             399999999999981999999999999999699989999999999998----2369999999999998199909999999
Q 004622          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRR  455 (741)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l  455 (741)
                      +++.++.+|..++..+|+.+|+.+|+++.+.  .+..+.+.+|.+|..    ..++..|..++..+....  .+.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC--CCCHHHCC
T ss_conf             9899999999999877999999999999978--9999999999999809996056999987501222111--11123135


Q ss_pred             HHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             999998----3991999999999982199999999999999997----59999999999999971789999999999999
Q 004622          456 GQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (741)
Q Consensus       456 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  527 (741)
                      |.++..    ..+.+.|...++.+....  .......++..+..    ......+...+.+...  +.+...+..+|..+
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~  152 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
T ss_conf             0122432112123677988876554321--4668876343323787331015778887555200--11101044555564


Q ss_pred             HH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--
Q ss_conf             98----1999999999999997180409999999999999----1892999999999993185529999999999998--
Q 004622          528 SS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--  597 (741)
Q Consensus       528 ~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--  597 (741)
                      ..    ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.  .++.+.+.+|.+|..  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCC
T ss_conf             0688743342200012211323--2222332211312126765431034445467665303--68999999999998399


Q ss_pred             --CCCHHHHHHHHHHHHHHCCCC
Q ss_conf             --899599999999846304984
Q 004622          598 --LGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       598 --~g~~~~A~~~~~~al~~~p~~  618 (741)
                        ..++.+|+.+|+++....+..
T Consensus       229 g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         229 GVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHH
T ss_conf             97618999999999999876999

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-14  Score=101.04  Aligned_cols=105  Identities=20%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             99999998199999999999999969998999999999999823699999999999981999099999999999983991
Q 004622          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (741)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  465 (741)
                      ..|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf             99999999589999999866021100011333245678887405421288889999987544668779999999994999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9999999999821999999999999
Q 004622          466 VEAIQDLSKALEFEPNSADILHERG  490 (741)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la  490 (741)
                      ++|+..+++++.+.|++..++..++
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~  119 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQ  119 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             9999989999872999799999999

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-14  Score=99.08  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=57.7

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999999819999999999999996999899999999999982369999999999998199909999999999998399
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (741)
                      ...|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++..+|+
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999969999999999998861996013430001101100001121001346777402202677889999998127


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             1999999999982199999999999999
Q 004622          465 SVEAIQDLSKALEFEPNSADILHERGIV  492 (741)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (741)
                      +++|+..++++++.+|+++.++..++.+
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999999998498989999999978

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2e-15  Score=105.67  Aligned_cols=89  Identities=18%  Similarity=0.168  Sum_probs=27.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             99999759999999999999971789999999999999981999999999999997180409999999999999189299
Q 004622          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (741)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~  569 (741)
                      |..++..|+|++|+..|.+++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|.++|.++..+|++++
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~   90 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE   90 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf             99999869999999999999985999899998178987410000012478888887188738999999999998799999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q 004622          570 ALECLQQVL  578 (741)
Q Consensus       570 A~~~~~~al  578 (741)
                      |+..|++++
T Consensus        91 A~~~~~~al   99 (201)
T d2c2la1          91 AIANLQRAY   99 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999998

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.57  E-value=4.8e-11  Score=79.27  Aligned_cols=217  Identities=17%  Similarity=0.100  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999999999982369999999999998199909999999999998----39919999999999821999999999999
Q 004622          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERG  490 (741)
Q Consensus       415 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  490 (741)
                      |.+++.+|..+...+++.+|+.+|+++.+.  ++..+.+.+|.+|..    ..++..|..++..+....  ++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC--CCCHHHCCC
T ss_conf             899999999999877999999999999978--9999999999999809996056999987501222111--111231350


Q ss_pred             HHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99997----5999999999999997178999999999999998----199999999999999718040999999999999
Q 004622          491 IVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (741)
Q Consensus       491 ~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (741)
                      .++..    ..+.+.|...++.+...  ....+...++..+..    ......+...+.+...  +.+...+..+|.++.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~  153 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHC
T ss_conf             12243211212367798887655432--14668876343323787331015778887555200--111010445555640


Q ss_pred             H----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-
Q ss_conf             9----1892999999999993185529999999999998----899599999999846304984389999999999985-
Q 004622          563 D----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNA-  633 (741)
Q Consensus       563 ~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-  633 (741)
                      .    ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+...   +.+ .+.+|.+|.. 
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a-~~~LG~~y~~G  227 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGG-CFNLGAMQYNG  227 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHH-HHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC---HHH-HHHHHHHHHCC
T ss_conf             688743342200012211323--222233221131212676543103444546766530368---999-99999999839


Q ss_pred             ---CCCHHHHHHHHH
Q ss_conf             ---989899999888
Q 004622          634 ---WPFIRRRLLCTR  645 (741)
Q Consensus       634 ---~g~~~~A~~~~~  645 (741)
                         ..++.+|+.+++
T Consensus       228 ~g~~~n~~~A~~~~~  242 (265)
T d1ouva_         228 EGVTRNEKQAIENFK  242 (265)
T ss_dssp             SSSSCCSTTHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             997618999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.9e-14  Score=96.85  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHH-------HHH
Q ss_conf             3999999999992189999999999998043-77245987999999602499999999999984999745-------999
Q 004622           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYI  107 (741)
Q Consensus        36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~  107 (741)
                      +...+.+++.+|..|+|++|+.+|+++|+++ .++..+.++|.+|.++|+|++|+.+|++++.++|++..       +++
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             89999999999985999999999999988496458999868899988186077899999999868012788988999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             9999999869999999999999974599959
Q 004622          108 LKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      .+|.++..++++++|+..|++++..+|....
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~  114 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV  114 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             9999999938899999999999845999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.8e-13  Score=90.06  Aligned_cols=77  Identities=21%  Similarity=0.281  Sum_probs=34.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999819999999999999996999899999999999982369999999999998199909999999999998
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (741)
                      ..+|.+++..|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...
T Consensus        66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          66 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999988642110110000000100223103467779999872229999999999997298989999999999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.50  E-value=1.4e-12  Score=88.60  Aligned_cols=136  Identities=18%  Similarity=0.143  Sum_probs=73.3

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             86478985244787249910489999986500799800699999999713308997899997588999873104885399
Q 004622          303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD  382 (741)
Q Consensus       303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  382 (741)
                      ..+......|+.+++.|+|.+|+..|.+++...|........          ......                 +....
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------~~~~~~-----------------~~~~~   65 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------ESKASE-----------------SFLLA   65 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------HHHHHH-----------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH----------HHHHCC-----------------HHHHH
T ss_conf             999999999999999599999999999999999875001245----------553106-----------------46799


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999998199999999999999969998999999999999823699999999999981999099999999999983
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (741)
                      ++..+|.+++..|++.+|+..+++++..+|.+..+++.+|.++..+|++++|+..|.+++.++|++..+...++.+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99849999877622011000223222013104889998899998827899999999999985989899999999999999


Q ss_pred             CCH
Q ss_conf             991
Q 004622          463 GES  465 (741)
Q Consensus       463 g~~  465 (741)
                      +..
T Consensus       146 ~~~  148 (168)
T d1kt1a1         146 KEH  148 (168)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             869

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=1.4e-12  Score=88.54  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             47898524478724991048999998650079980069999999971330899789999758899987310488539999
Q 004622          305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR  384 (741)
Q Consensus       305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (741)
                      ++.....|+.++..|+|.+|+..|.+++...+....                  ..        .........|.....+
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~------------------~~--------~~~~~~~~~~~~~~~~   80 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA------------------AA--------EDADGAKLQPVALSCV   80 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH------------------HS--------CHHHHGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH------------------HH--------HHHHHHHHCHHHHHHH
T ss_conf             999999999999908899999999999874111166------------------66--------5577877190239999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             999999998199999999999999969998999999999999823699999999999981999099999999999983
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (741)
                      ..+|.++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+....
T Consensus        81 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          81 LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             989999986402101366655443100022367776999999804799999999999985989999999999999999

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.7e-13  Score=92.01  Aligned_cols=107  Identities=15%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHH
Q ss_conf             9999992189999999999998043-772459879999996---024999999999999849997--4599999999998
Q 004622           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQ---LELHKHVIRDCDKALQLDPTL--LQAYILKGCAFSA  115 (741)
Q Consensus        42 ~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~  115 (741)
                      .++.++..++|++|.+.|.+++.++ .++..++|+|.++++   .+++++|+..+++++..+|+.  ..+++.+|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             98873699999999999999883299989999999999998512678999999999998606993199999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             6999999999999997459995999999999999
Q 004622          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (741)
Q Consensus       116 ~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  149 (741)
                      +|++++|+..|+++++++|++.. +......+..
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~-A~~l~~~I~~  117 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQ-AKELERLIDK  117 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH
T ss_conf             73169999999999976909899-9999999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=3.1e-12  Score=86.45  Aligned_cols=133  Identities=17%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             86478985244787249910489999986500799800699999999713308997899997588999873104885399
Q 004622          303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD  382 (741)
Q Consensus       303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  382 (741)
                      ..+..+...|+.+|+.|+|.+|+..|.+++...+..........            ..        .      ..+....
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~------------~~--------~------~~~~~~~   68 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL------------LD--------K------KKNIEIS   68 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH------------HH--------H------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH------------HH--------H------HHHHHHH
T ss_conf             99999999999999959999999999987760730011105778------------87--------6------3107889


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999999999819999999999999996999899999999999982369999999999998199909999999999998
Q 004622          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (741)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (741)
                      ++.++|.+++..|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+...
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9961999999846530111010001000000012467768999996899999999999998298989999999999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.42  E-value=6.5e-13  Score=90.54  Aligned_cols=105  Identities=18%  Similarity=0.130  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC
Q ss_conf             97399999999999218999999999999804377-------------24598799999960249999999999998499
Q 004622           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-------------IQDICNRAFCYSQLELHKHVIRDCDKALQLDP  100 (741)
Q Consensus        34 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~-------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  100 (741)
                      ..++.....+..+|..|+|++|+..|+++|++.++             ...|.|+|.+|..+|+|++|+.++++++.+.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             99999999999999859999999999999986844201020012102799999999999982863001576643553043


Q ss_pred             C-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             9-----------7459999999999869999999999999974599959
Q 004622          101 T-----------LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA  138 (741)
Q Consensus       101 ~-----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  138 (741)
                      .           +..+++.+|.+|..+|++++|+..|++++++.|+...
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             1002455443112787752699999888888889999999986687423

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=4.9e-12  Score=85.26  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=26.9

Q ss_pred             HHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             92189999999999998043-77245987999999602499999999999984999745999999999986999999999
Q 004622           47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (741)
Q Consensus        47 ~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  125 (741)
                      +..|++.+|+..|++++.++ .++..+.++|.++.++|++++|+..+++++.++|++..+++.+|.+|..+|++++|+..
T Consensus        27 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~  106 (112)
T d1hxia_          27 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS  106 (112)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf             98760589999886101121111001233545641012587741000001111110000037899999997899999999


Q ss_pred             HHH
Q ss_conf             999
Q 004622          126 WEK  128 (741)
Q Consensus       126 ~~~  128 (741)
                      +++
T Consensus       107 l~~  109 (112)
T d1hxia_         107 LRA  109 (112)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.37  E-value=7.4e-12  Score=84.18  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999999819999999999999996999899999999999982369999999999998199909999999999998399
Q 004622          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (741)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (741)
                      +..|..++..|++.+|+..|++++..+|+++.+|..+|.++...+++++|+..++++++++|.+..++..+|.++...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             99999999876058999988610112111100123354564101258774100000111111000003789999999789


Q ss_pred             HHHHHHHHHHH
Q ss_conf             19999999999
Q 004622          465 SVEAIQDLSKA  475 (741)
Q Consensus       465 ~~~A~~~~~~a  475 (741)
                      +++|++.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3e-11  Score=80.51  Aligned_cols=53  Identities=30%  Similarity=0.369  Sum_probs=16.2

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             99975999999999999997178999999999999998199999999999999
Q 004622          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (741)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  544 (741)
                      .++..|+|++|+.+|.++++.+|.+..++.++|.++..+|++++|+..+++++
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99985999999999999988496458999868899988186077899999999

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=7.1e-12  Score=84.30  Aligned_cols=114  Identities=19%  Similarity=0.146  Sum_probs=0.0

Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             998236999999999999819990999999999999----------8399199999999998219999999999999999
Q 004622          425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA----------ALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (741)
Q Consensus       425 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (741)
                      +.+.+.+++|+..|+++++.+|+++.++..+|.++.          ..+.+++|+..++++++++|+++.+++++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             99873699999999999861883108999999999876213333677887888999999988730120587766899998


Q ss_pred             HCCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             7599-----------9999999999997178999999999999998199999999
Q 004622          495 KFKD-----------FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (741)
Q Consensus       495 ~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  538 (741)
                      .+|+           +++|+.+|++++.++|++...+..++.+....+.+.++.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7010113578898867876312110002598889999999999997978999998

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.13  E-value=2e-10  Score=75.56  Aligned_cols=125  Identities=11%  Similarity=0.028  Sum_probs=51.9

Q ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             97599999999999999717899999999999999819999999999999971804099999999999991892999999
Q 004622          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (741)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~  573 (741)
                      +..|++++|+..++++++.+|.+...+..++.++...|++++|+..++++++.+|++...+..++.++...+...++...
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             88889999999999999978999999999999999879999999999999986997389999999999834663789987


Q ss_pred             HHHHHH-HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             999993-185529999999999998899599999999846304984
Q 004622          574 LQQVLY-IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH  618 (741)
Q Consensus       574 ~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (741)
                      ...... ..|.....+...+..+...|++++|...++++.+..|..
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf             5444203586479999999999996799899999999998339999

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=1.8e-09  Score=69.78  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CH----------------------HHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             9999999999921899999999999980437-72----------------------459879999996024999999999
Q 004622           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSY-EI----------------------QDICNRAFCYSQLELHKHVIRDCD   93 (741)
Q Consensus        37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~-~~----------------------~~~~~~a~~~~~~g~~~~A~~~~~   93 (741)
                      ......+..++..|+++.|++.|++|+.+.+ +.                      ..+.+++.++..+|++++|+..++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999999887999999999999863861311257631899999999999999999999999988799057899999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             999849997459999999999869999999999999
Q 004622           94 KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (741)
Q Consensus        94 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  129 (741)
                      +++..+|.+..+|..++.++..+|++.+|+..|+++
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             999849851999999999999855799999999999

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.12  E-value=1.6e-10  Score=76.08  Aligned_cols=80  Identities=10%  Similarity=-0.040  Sum_probs=36.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             9992189999999999998043-772459879999996024999999999999849997459999999999869999999
Q 004622           45 KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (741)
Q Consensus        45 ~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~  123 (741)
                      +++.+|++++|+..|+++++.+ .+...+.+++.++...|++++|+..++++++++|++..++..++.++...+..+++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99888899999999999999789999999999999998799999999999999869973899999999998346637899


Q ss_pred             H
Q ss_conf             9
Q 004622          124 S  124 (741)
Q Consensus       124 ~  124 (741)
                      .
T Consensus        85 ~   85 (264)
T d1zbpa1          85 Q   85 (264)
T ss_dssp             T
T ss_pred             H
T ss_conf             8

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.07  E-value=1.2e-09  Score=70.83  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             999999999889959999999984630
Q 004622          588 YHLRGLLLHGLGQHKKAIKDLSSGSRT  614 (741)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~  614 (741)
                      ++++|.+|..+|++++|+..|++++++
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             752699999888888889999999986

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.4e-09  Score=65.75  Aligned_cols=66  Identities=14%  Similarity=0.024  Sum_probs=25.1

Q ss_pred             HHHCCCHHHHHHHHHHHHHCC-CC-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             992189999999999998043-77-------2459879999996024999999999999849997459999999
Q 004622           46 LCSLRNWSKAIRILDSLLAQS-YE-------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (741)
Q Consensus        46 ~~~~g~~~~Ai~~~~~al~~~-~~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~  111 (741)
                      +|+.|+|.+|+..|++|+++. .+       ...+.++|.++.++|++++|+..++++++++|+++.++..++.
T Consensus        15 ~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99977999999999999998865301476478999987268886577398887887798869297999999999

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=7.2e-06  Score=48.06  Aligned_cols=83  Identities=12%  Similarity=0.023  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             7724598799999960---249999999999998499974-599999999998699999999999999745999599999
Q 004622           67 YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLL-QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQ  142 (741)
Q Consensus        67 ~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  142 (741)
                      ......++.|.+..+.   .+..+++..++.+++.+|... ++++.+|.+|.++|++++|+..++++|+++|+|.. +..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q-A~~  111 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ-VGA  111 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHH
T ss_pred             CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHH
T ss_conf             8810199999999827968899999999999985495059999999999999873299999999999823998499-999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q 004622          143 FLELEELL  150 (741)
Q Consensus       143 ~l~~~~~~  150 (741)
                      +...+...
T Consensus       112 L~~~Ie~~  119 (124)
T d2pqrb1         112 LKSMVEDK  119 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999998

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=5.8e-05  Score=42.60  Aligned_cols=79  Identities=19%  Similarity=0.184  Sum_probs=27.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHH
Q ss_conf             99999999999997180409999999999999----1892999999999993185529999999999998----899599
Q 004622          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKK  603 (741)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~  603 (741)
                      +.++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+...+|.+|..    ..+..+
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             899999987654113--312555567875330135310357888887500025--7406778999999829846778999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999984630
Q 004622          604 AIKDLSSGSRT  614 (741)
Q Consensus       604 A~~~~~~al~~  614 (741)
                      |+.+|+++.+.
T Consensus       114 A~~~~~~Aa~~  124 (133)
T d1klxa_         114 AVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999987

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.08  E-value=0.00014  Score=40.31  Aligned_cols=10  Identities=30%  Similarity=0.444  Sum_probs=3.3

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q 004622          432 EAAISDFTEA  441 (741)
Q Consensus       432 ~~A~~~~~~a  441 (741)
                      ++|+.+|+++
T Consensus        10 ~~A~~~~~ka   19 (133)
T d1klxa_          10 KKAIQYYVKA   19 (133)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=0.0001  Score=41.17  Aligned_cols=76  Identities=12%  Similarity=0.046  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999999999981---999999999999999699989-99999999999823699999999999981999099999999
Q 004622          381 VDFRLSRGIAQVNE---GKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (741)
Q Consensus       381 ~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  456 (741)
                      ....|..|+++...   .+..+++.+++.++..+|... +.++.+|..|+++|+|++|..+++++++.+|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             10199999999827968899999999999985495059999999999999873299999999999823998499999999

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.001  Score=35.06  Aligned_cols=207  Identities=11%  Similarity=-0.053  Sum_probs=96.0

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             999823699999999999981999099999999----9999839919999999999821999999999999999975999
Q 004622          424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG----QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF  499 (741)
Q Consensus       424 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  499 (741)
                      .-....+.+.|...+.......+.....+....    ......+..+.+...+........ +......++......+++
T Consensus       223 ~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~w~~~~al~~~~~  301 (450)
T d1qsaa1         223 ASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDR  301 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCH
T ss_conf             9874248557999987521202356799999999999999876863999999986012346-669999999999882986


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999999717899999999999999819999999999999971804099999999999991892999999999993
Q 004622          500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (741)
Q Consensus       500 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  579 (741)
                      ..+...+..............+.+|..+...|+.+.|...|..+.. .++   .|-.++...  +|..-. +.  ...+.
T Consensus       302 ~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~---fYG~LAa~~--Lg~~~~-~~--~~~~~  372 (450)
T d1qsaa1         302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRG---FYPMVAAQR--IGEEYE-LK--IDKAP  372 (450)
T ss_dssp             HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCS---HHHHHHHHH--TTCCCC-CC--CCCCC
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCC---HHHHHHHHH--CCCCCC-CC--CCCCC
T ss_conf             9999999865846242899999999999983981568999999845-787---399999998--299989-98--67799


Q ss_pred             HCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             18552---999999999999889959999999984630498438999999999998598989999988
Q 004622          580 IDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCT  644 (741)
Q Consensus       580 ~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~  644 (741)
                      ..+..   ...-...+..+...|....|...+...+...+   ... ...++.+....|.++.|+...
T Consensus       373 ~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~---~~~-~~~la~lA~~~g~~~~aI~a~  436 (450)
T d1qsaa1         373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS---KTE-QAQLARYAFNNQWWDLSVQAT  436 (450)
T ss_dssp             SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHH-HHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC---HHH-HHHHHHHHHHCCCHHHHHHHH
T ss_conf             5677763138598999999986994699999999986799---999-999999999879846999999

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.0017  Score=33.83  Aligned_cols=122  Identities=10%  Similarity=-0.049  Sum_probs=47.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             9999981999999999999999699989999999999----998236999999999999819990999999999999839
Q 004622          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA----RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (741)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (741)
                      +.......+...|...+.......+.....+......    ....+..+.+...+........+........+ .....+
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~  299 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTG  299 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCC
T ss_conf             9998742485579999875212023567999999999999998768639999999860123466699999999-998829


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             91999999999982199999999999999997599999999999999
Q 004622          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (741)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (741)
                      ++..+...+..............+.+|..+...|+.+.|...|..+.
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             86999999986584624289999999999998398156899999984

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=0.004  Score=31.50  Aligned_cols=128  Identities=8%  Similarity=-0.060  Sum_probs=57.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             85244787249910489999986500799800699999999713308997899997588999873104885399999999
Q 004622          309 DKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRG  388 (741)
Q Consensus       309 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  388 (741)
                      ...|..+++.|.|+.|...|...-.        +..+..++...++++.+...        ..+.     ...+.|....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~--------~~k~-----~~~~~~k~~~   76 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDG--------ARKA-----NSTRTWKEVC   76 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHH--------HHHH-----TCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCC--------HHHHHHHHHHHCCHHHHHHH--------HHHC-----CCHHHHHHHH
T ss_conf             9999999878779999999986789--------99999999703159999999--------9880-----8899999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999819999999999999996999899999999999982369999999999998199909999999999998
Q 004622          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (741)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (741)
                      ..+.......-+..+ ..   .....++-.......|...|.++..+.++...+...+.+...+..++.+|..
T Consensus        77 ~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          77 FACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHCCHHHHHHHH-HH---HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             999727287899999-98---7535788789999999876985999999999975774446799999999998

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.02  E-value=0.023  Score=26.95  Aligned_cols=98  Identities=17%  Similarity=0.029  Sum_probs=40.9

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99998199999999999999969998999999999999823699999999999981999099999999999983991999
Q 004622          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA  468 (741)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  468 (741)
                      .++...+++..|...+.+.     ++...|......+....+..-+.-+ ..   .....++-.......+...|.+++.
T Consensus        48 ~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~L  118 (336)
T d1b89a_          48 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEEL  118 (336)
T ss_dssp             HHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHCCHHHHHHHH-HH---HHHCCHHHHHHHHHHHHHCCCHHHH
T ss_conf             9997031599999999880-----8899999999999727287899999-98---7535788789999999876985999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999999982199999999999999997
Q 004622          469 IQDLSKALEFEPNSADILHERGIVNFK  495 (741)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~  495 (741)
                      +.+++.++...+.+...+..++.+|.+
T Consensus       119 i~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_         119 ITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             999999975774446799999999998

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.25  E-value=0.86  Score=17.46  Aligned_cols=40  Identities=15%  Similarity=0.060  Sum_probs=15.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9999998399199999999998219999999999999999
Q 004622          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (741)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (741)
                      .|...+..|++.-|.+....++..+|++..+...++.+|.
T Consensus       436 ~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~  475 (505)
T d2cfua2         436 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALE  475 (505)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9999998878989999999999629999999999999999