Citrus Sinensis ID: 004632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-
Protein Sequence
MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mplfrsctnlRKLTRLHAHLLVTglhydppastRLIESYAEMgslrssrlvfdtfkepdsFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACsslgdlgsgekvhgriikcgfdkddvIQTSILctygefgclDDARKVFDKMTSRDVVSWSSIIASyfdnadvseGLKMFHSMVREGVEPDFVTMLSLAEACGELcslrparsihgHVLRRkikidgplgnSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGScaglgwlregksVHCQIIRkgmgpeydylGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQtwglmpdsfSVASSLsacgnvgslqlglqihghvikidckdefVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACsnigqlekgkwVHHKLISygvrkdiyIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLdsgikpnevTFMNILWACshsgsveegkFYFNAMrifgvepdlqHYACMVDLLSRSGDIEGAFKMIhsmpfpangsiwGALLNGCRIHKRIDVMKTIEKELSvtgtndngyYTLLSNIyaeegnwdefgkVRSIMEvtglkkvpgysti
Flexible Loop (DISEMBL)
MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRparsihghvlrrkikidgplGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSnigqlekgkwvHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELsvtgtndngyYTLLSNIYAEEGNWDEFGKVRSImevtglkkvpgysti
Low Complexity Region (SEG)
MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI
Disordered region (IsUnstruct)
****RSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK********
Disordered Region (DISOPRED)
MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI
Disordered Region (DISEMBL)
MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI
Disordered Region (DISPRO)
MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	741	2.2.26 [Sep-21-2011]
Q9C507	787	Putative pentatricopeptid	yes	no	0.998	0.940	0.586	0.0
Q9STE1	857	Pentatricopeptide repeat-	no	no	0.995	0.861	0.313	1e-121
Q9SVA5	834	Pentatricopeptide repeat-	no	no	0.978	0.869	0.327	1e-119
Q0WN60	970	Pentatricopeptide repeat-	no	no	0.970	0.741	0.323	1e-119
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.913	0.760	0.331	1e-113
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.859	0.787	0.331	1e-111
Q3E9N1	775	Pentatricopeptide repeat-	no	no	0.986	0.943	0.313	1e-111
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.865	0.735	0.331	1e-110
Q9SS60	882	Pentatricopeptide repeat-	no	no	0.990	0.832	0.313	1e-109
Q9ZQ74	689	Pentatricopeptide repeat-	no	no	0.858	0.923	0.341	1e-109

>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/743 (58%), Positives = 560/743 (75%), Gaps = 3/743 (0%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTG-LHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
           MPLFRSC++LR +++LHAHLLVTG L  DP   T+LIESYA MGS  SSRLVF+ F  PD
Sbjct: 5   MPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPD 64

Query: 60  SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACS-SLGDLGSGEKVH 118
           SFM+ VLIKC +W +  + +I LYH+++ E   IS F++PSVLRAC+ S   L  G KVH
Sbjct: 65  SFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVH 124

Query: 119 GRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVS 178
           GRIIK G D D VI+TS+LC YG+ G L DA KVFD M  RD+V+WS++++S  +N +V 
Sbjct: 125 GRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVV 184

Query: 179 EGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFI 238
           + L+MF  MV +GVEPD VTM+S+ E C EL  LR ARS+HG + R+   +D  L NS +
Sbjct: 185 KALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLL 244

Query: 239 VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298
            MYSKCGDLLS+ER F KI K+   SWTAMIS YNR  + +KAL SF +M++   EPNL+
Sbjct: 245 TMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLV 304

Query: 299 TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358
           TL +VL SC  +G +REGKSVH   +R+ + P Y+ L  AL+E YAECGK+S+CE V+  
Sbjct: 305 TLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRV 364

Query: 359 IGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLG 418
           + +RNI++WN LIS YA +GM  +AL L  QM T  + PD+F++ASS+SAC N G + LG
Sbjct: 365 VSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLG 424

Query: 419 LQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNG 478
            QIHGHVI+ D  DEFVQ+SLIDMYSK G  + A  +F +I+ +SVV WNSM+CGF QNG
Sbjct: 425 KQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNG 484

Query: 479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDT 538
           NS+EAI+LF  MY + LEM+EVTFL  IQACS+IG LEKGKWVHHKLI  G+ KD++ DT
Sbjct: 485 NSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDT 543

Query: 539 ALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP 598
           AL DMYAKCGDL  A+ VF +MS R++VSWS+MI+ YGMHG++  A S F QM++SG KP
Sbjct: 544 ALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKP 603

Query: 599 NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658
           NEV FMN+L AC HSGSVEEGK+YFN M+ FGV P+ +H+AC +DLLSRSGD++ A++ I
Sbjct: 604 NEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTI 663

Query: 659 HSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD 718
             MPF A+ S+WG+L+NGCRIH+++D++K I+ +LS   T+D GYYTLLSNIYAEEG W+
Sbjct: 664 KEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWE 723

Query: 719 EFGKVRSIMEVTGLKKVPGYSTI 741
           EF ++RS M+ + LKKVPGYS I
Sbjct: 724 EFRRLRSAMKSSNLKKVPGYSAI 746

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1

 Score =  437 bits (1123), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/747 (31%), Positives = 414/747 (55%), Gaps = 9/747 (1%)

Query: 3   LFRSCTN---LRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
           L ++C+N   LR+  ++HA L+V  +  D     R++  YA  GS      +F       
Sbjct: 41  LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query: 60  SFM--WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKV 117
           S +  W  +I  ++ N    +++  Y KM+    +     +P +++AC +L +    + +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160

Query: 118 HGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADV 177
              +   G D ++ + +S++  Y E+G +D   K+FD++  +D V W+ ++  Y     +
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220

Query: 178 SEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSF 237
              +K F  M  + + P+ VT   +   C     +     +HG V+   +  +G + NS 
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280

Query: 238 IVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL 297
           + MYSKCG    A + F  + +  T +W  MIS Y +SG  +++L  F +M+     P+ 
Sbjct: 281 LSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDA 340

Query: 298 ITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIH 357
           IT  ++L S +    L   K +HC I+R  +  +  +L  ALI+ Y +C  +S  + +  
Sbjct: 341 ITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDI-FLTSALIDAYFKCRGVSMAQNIFS 399

Query: 358 AIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQL 417
                +++ +  +IS Y   G+  ++LE+   +    + P+  ++ S L   G + +L+L
Sbjct: 400 QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKL 459

Query: 418 GLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQ 476
           G ++HG +IK    +   +  ++IDMY+KCG  NLAY +FER+ ++ +V WNSMI    Q
Sbjct: 460 GRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQ 519

Query: 477 NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYI 536
           + N   AI++F QM ++ +  D V+   A+ AC+N+     GK +H  +I + +  D+Y 
Sbjct: 520 SDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYS 579

Query: 537 DTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLD-SG 595
           ++ L DMYAKCG+L+ A  VF +M E+N+VSW+++I   G HG+L D+  LF +M++ SG
Sbjct: 580 ESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 639

Query: 596 IKPNEVTFMNILWACSHSGSVEEGKFYFNAM-RIFGVEPDLQHYACMVDLLSRSGDIEGA 654
           I+P+++TF+ I+ +C H G V+EG  +F +M   +G++P  +HYAC+VDL  R+G +  A
Sbjct: 640 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 699

Query: 655 FKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE 714
           ++ + SMPFP +  +WG LL  CR+HK +++ +    +L     +++GYY L+SN +A  
Sbjct: 700 YETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 759

Query: 715 GNWDEFGKVRSIMEVTGLKKVPGYSTI 741
             W+   KVRS+M+   ++K+PGYS I
Sbjct: 760 REWESVTKVRSLMKEREVQKIPGYSWI 786

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1

 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/733 (32%), Positives = 400/733 (54%), Gaps = 8/733 (1%)

Query: 16  LHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNF 75
           +H  ++V GL  D   S  LI  Y+  G +  +R VF+   E +   W+ ++     +  
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 76  FEESILLYHKMIREQATISN-FIYPSVLRACSSLGDLGSGE--KVHGRIIKCGFDKDDVI 132
           +EES++++ +  R +    N +I  S ++ACS L   G     ++   ++K GFD+D  +
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query: 133 QTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGV 192
            T ++  Y + G +D AR VFD +  +  V+W+++I+           L++F+ ++ + V
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query: 193 EPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAER 252
            PD   + ++  AC  L  L   + IH H+LR  +++D  L N  I  Y KCG +++A +
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHK 305

Query: 253 TFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGW 312
            F  +  +   SWT ++S Y ++   ++A+E F  M +   +P++    ++L SCA L  
Sbjct: 306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365

Query: 313 LREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLIS 372
           L  G  VH   I+  +G +  Y+  +LI+ YA+C  +++  KV       +++ +N +I 
Sbjct: 366 LGFGTQVHAYTIKANLGND-SYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE 424

Query: 373 EYARKGMS---KEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKID 429
            Y+R G      EAL +   M+   + P   +  S L A  ++ SL L  QIHG + K  
Sbjct: 425 GYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYG 484

Query: 430 CK-DEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFH 488
              D F  S+LID+YS C     + L+F+ ++ K +V+WNSM  G+ Q   + EA+NLF 
Sbjct: 485 LNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFL 544

Query: 489 QMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCG 548
           ++ L+    DE TF   + A  N+  ++ G+  H +L+  G+  + YI  AL DMYAKCG
Sbjct: 545 ELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG 604

Query: 549 DLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW 608
             + A + FDS + R+VV W+++I  Y  HG+   A  + ++M+  GI+PN +TF+ +L 
Sbjct: 605 SPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLS 664

Query: 609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGS 668
           ACSH+G VE+G   F  M  FG+EP+ +HY CMV LL R+G +  A ++I  MP      
Sbjct: 665 ACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAI 724

Query: 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME 728
           +W +LL+GC     +++ +   +   ++   D+G +T+LSNIYA +G W E  KVR  M+
Sbjct: 725 VWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMK 784

Query: 729 VTGLKKVPGYSTI 741
           V G+ K PG S I
Sbjct: 785 VEGVVKEPGRSWI 797

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/739 (32%), Positives = 407/739 (55%), Gaps = 20/739 (2%)

Query: 19  HLLVTG---LHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNF 75
           H LV+G   L  D    TR+I  YA  GS   SR VFD  +  + F W  +I  Y  N  
Sbjct: 107 HQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNEL 166

Query: 76  FEESILLYHKMIREQATISN-FIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQT 134
           ++E +  + +MI     + + F YP V++AC+ + D+G G  VHG ++K G  +D  +  
Sbjct: 167 YDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN 226

Query: 135 SILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVE- 193
           +++  YG  G + DA ++FD M  R++VSW+S+I  + DN    E   +   M+ E  + 
Sbjct: 227 ALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDG 286

Query: 194 ---PDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSA 250
              PD  T++++   C     +   + +HG  ++ ++  +  L N+ + MYSKCG + +A
Sbjct: 287 AFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA 346

Query: 251 ERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEE--PNLITLITVLGSCA 308
           +  F     +   SW  M+  ++  G      +   +ML   E+   + +T++  +  C 
Sbjct: 347 QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCF 406

Query: 309 GLGWLREGKSVHCQIIRKGMGPEYDY---LGPALIEFYAECGKMSECEKVIHAIGERNIL 365
              +L   K +HC  +++    E+ Y   +  A +  YA+CG +S  ++V H I  + + 
Sbjct: 407 HESFLPSLKELHCYSLKQ----EFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVN 462

Query: 366 SWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHV 425
           SWN LI  +A+    + +L+  +QM+  GL+PDSF+V S LSAC  + SL+LG ++HG +
Sbjct: 463 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 522

Query: 426 IKIDC-KDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAI 484
           I+    +D FV  S++ +Y  CG       LF+ ++ KS+V WN++I G+ QNG    A+
Sbjct: 523 IRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRAL 582

Query: 485 NLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY 544
            +F QM L  +++  ++ +    ACS +  L  G+  H   + + +  D +I  +L DMY
Sbjct: 583 GVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMY 642

Query: 545 AKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFM 604
           AK G +  + +VF+ + E++  SW+AMI  YG+HG   +A  LF++M  +G  P+++TF+
Sbjct: 643 AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFL 702

Query: 605 NILWACSHSGSVEEGKFYFNAMR-IFGVEPDLQHYACMVDLLSRSGDIEGAFKMI-HSMP 662
            +L AC+HSG + EG  Y + M+  FG++P+L+HYAC++D+L R+G ++ A +++   M 
Sbjct: 703 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 762

Query: 663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722
             A+  IW +LL+ CRIH+ +++ + +  +L          Y LLSN+YA  G W++  K
Sbjct: 763 EEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRK 822

Query: 723 VRSIMEVTGLKKVPGYSTI 741
           VR  M    L+K  G S I
Sbjct: 823 VRQRMNEMSLRKDAGCSWI 841

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/699 (33%), Positives = 393/699 (56%), Gaps = 22/699 (3%)

Query: 63  WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRII 122
           W  L++  + +N   E++L Y  MI       N+ +P++L+A + L D+  G+++H  + 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 123 KCGFDKDDV-IQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGL 181
           K G+  D V +  +++  Y + G      KVFD+++ R+ VSW+S+I+S          L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 182 KMFHSMVREGVEPDFVTMLSLAEACGELC---SLRPARSIHGHVLRRKIKIDGPLGNSFI 238
           + F  M+ E VEP   T++S+  AC  L     L   + +H + LR K +++  + N+ +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLV 243

Query: 239 VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298
            MY K G L S++        R   +W  ++S   ++    +ALE   +M+    EP+  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 299 TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358
           T+ +VL +C+ L  LR GK +H   ++ G   E  ++G AL++ Y  C ++    +V   
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 359 IGERNILSWNMLISEYARKGMSKEALELLVQMQ-TWGLMPDSFSVASSLSACGNVGSLQL 417
           + +R I  WN +I+ Y++    KEAL L + M+ + GL+ +S ++A  + AC   G+   
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 418 GLQIHGHVIK--IDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFY 475
              IHG V+K  +D +D FVQ++L+DMYS+ G  ++A  +F +++ + +V WN+MI G+ 
Sbjct: 424 KEAIHGFVVKRGLD-RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 476 QNGNSLEAINLFHQMY-----------LNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHK 524
            + +  +A+ L H+M               L+ + +T +T + +C+ +  L KGK +H  
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542

Query: 525 LISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDA 584
            I   +  D+ + +AL DMYAKCG LQ +++VFD + ++NV++W+ +I  YGMHG   +A
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602

Query: 585 ASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVD 643
             L + M+  G+KPNEVTF+++  ACSHSG V+EG   F  M+  +GVEP   HYAC+VD
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVD 662

Query: 644 LLSRSGDIEGAFKMIHSMPFPAN-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702
           LL R+G I+ A+++++ MP   N    W +LL   RIH  +++ +   + L     N   
Sbjct: 663 LLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVAS 722

Query: 703 YYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
           +Y LL+NIY+  G WD+  +VR  M+  G++K PG S I
Sbjct: 723 HYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/643 (33%), Positives = 360/643 (55%), Gaps = 6/643 (0%)

Query: 101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRD 160
           +L  CSSL +L    ++   + K G  ++   QT ++  +  +G +D+A +VF+ + S+ 
Sbjct: 43  LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99

Query: 161 VVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHG 220
            V + +++  +   +D+ + L+ F  M  + VEP       L + CG+   LR  + IHG
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 221 HVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQK 280
            +++    +D         MY+KC  +  A + F ++ +R   SW  +++ Y+++G  + 
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 281 ALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALI 340
           ALE    M E   +P+ IT+++VL + + L  +  GK +H   +R G     + +  AL+
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN-ISTALV 278

Query: 341 EFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSF 400
           + YA+CG +    ++   + ERN++SWN +I  Y +    KEA+ +  +M   G+ P   
Sbjct: 279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338

Query: 401 SVASSLSACGNVGSLQLGLQIHGHVIKIDC-KDEFVQSSLIDMYSKCGFKNLAYLLFERI 459
           SV  +L AC ++G L+ G  IH   +++   ++  V +SLI MY KC   + A  +F ++
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 398

Query: 460 QQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK 519
           Q +++V WN+MI GF QNG  ++A+N F QM    ++ D  T+++ I A + +      K
Sbjct: 399 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 458

Query: 520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHG 579
           W+H  ++   + K++++ TAL DMYAKCG +  A+ +FD MSER+V +W+AMID YG HG
Sbjct: 459 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHG 518

Query: 580 QLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEG-KFYFNAMRIFGVEPDLQHY 638
               A  LF++M    IKPN VTF++++ ACSHSG VE G K ++     + +E  + HY
Sbjct: 519 FGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHY 578

Query: 639 ACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT 698
             MVDLL R+G +  A+  I  MP     +++GA+L  C+IHK ++  +   + L     
Sbjct: 579 GAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNP 638

Query: 699 NDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
           +D GY+ LL+NIY     W++ G+VR  M   GL+K PG S +
Sbjct: 639 DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/739 (31%), Positives = 396/739 (53%), Gaps = 8/739 (1%)

Query: 9   NLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIK 68
           +L  L + +A ++  GL  +   +++LI SYA  G    S  VF      D F+W  +IK
Sbjct: 39  SLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIK 98

Query: 69  CYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIK-CGFD 127
            +  N  +  S+  +  M+    +  +F  P V+ AC+ L     G  VHG ++K  GFD
Sbjct: 99  AHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFD 158

Query: 128 KDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMF--- 184
           ++  +  S +  Y + G L DA  VFD+M  RDVV+W++II+ +  N +   GL      
Sbjct: 159 RNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKM 218

Query: 185 HSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKC 244
           HS   +  +P+  T+    +AC  L +L+  R +HG  ++  +     + +S    YSK 
Sbjct: 219 HSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKS 278

Query: 245 GDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVL 304
           G+   A  +F ++      SWT++I+   RSG  +++ + F +M      P+ + +  ++
Sbjct: 279 GNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLI 338

Query: 305 GSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGER-N 363
                +  + +GK+ H  +IR     +   +  +L+  Y +   +S  EK+   I E  N
Sbjct: 339 NELGKMMLVPQGKAFHGFVIRHCFSLD-STVCNSLLSMYCKFELLSVAEKLFCRISEEGN 397

Query: 364 ILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHG 423
             +WN ++  Y +     + +EL  ++Q  G+  DS S  S +S+C ++G++ LG  +H 
Sbjct: 398 KEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHC 457

Query: 424 HVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLE 482
           +V+K        V +SLID+Y K G   +A+ +F      +V+ WN+MI  +     S +
Sbjct: 458 YVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCE-ADTNVITWNAMIASYVHCEQSEK 516

Query: 483 AINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTD 542
           AI LF +M     +   +T +T + AC N G LE+G+ +H  +       ++ +  AL D
Sbjct: 517 AIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALID 576

Query: 543 MYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVT 602
           MYAKCG L+ ++ +FD+ ++++ V W+ MI  YGMHG +  A +LF QM +S +KP   T
Sbjct: 577 MYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPT 636

Query: 603 FMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP 662
           F+ +L AC+H+G VE+GK  F  M  + V+P+L+HY+C+VDLLSRSG++E A   + SMP
Sbjct: 637 FLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMP 696

Query: 663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722
           F  +G IWG LL+ C  H   ++   + +    +   ++GYY +L+N+Y+  G W+E  +
Sbjct: 697 FSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIMLANMYSAAGKWEEAER 756

Query: 723 VRSIMEVTGLKKVPGYSTI 741
            R +M  +G+ K  G+S +
Sbjct: 757 AREMMRESGVGKRAGHSVV 775

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/645 (33%), Positives = 372/645 (57%), Gaps = 4/645 (0%)

Query: 100 SVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSR 159
           SVL+ C+    L  G++V   I   GF  D  + + +   Y   G L +A +VFD++   
Sbjct: 99  SVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIE 158

Query: 160 DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIH 219
             + W+ ++     + D S  + +F  M+  GVE D  T   ++++   L S+     +H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218

Query: 220 GHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQ 279
           G +L+        +GNS +  Y K   + SA + F ++ +R   SW ++I+ Y  +G  +
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 278

Query: 280 KALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPAL 339
           K L  FV+ML    E +L T+++V   CA    +  G++VH   ++     E D     L
Sbjct: 279 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE-DRFCNTL 337

Query: 340 IEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS 399
           ++ Y++CG +   + V   + +R+++S+  +I+ YAR+G++ EA++L  +M+  G+ PD 
Sbjct: 338 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 397

Query: 400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-DEFVQSSLIDMYSKCGFKNLAYLLFER 458
           ++V + L+ C     L  G ++H  + + D   D FV ++L+DMY+KCG    A L+F  
Sbjct: 398 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSE 457

Query: 459 IQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNC-LEMDEVTFLTAIQACSNIGQLEK 517
           ++ K ++ WN++I G+ +N  + EA++LF+ +        DE T    + AC+++   +K
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query: 518 GKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGM 577
           G+ +H  ++  G   D ++  +L DMYAKCG L  A  +FD ++ +++VSW+ MI  YGM
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577

Query: 578 HGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMR-IFGVEPDLQ 636
           HG   +A +LF QM  +GI+ +E++F+++L+ACSHSG V+EG  +FN MR    +EP ++
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637

Query: 637 HYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVT 696
           HYAC+VD+L+R+GD+  A++ I +MP P + +IWGALL GCRIH  + + + + +++   
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697

Query: 697 GTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
              + GYY L++NIYAE   W++  ++R  +   GL+K PG S I
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 742

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/739 (31%), Positives = 393/739 (53%), Gaps = 5/739 (0%)

Query: 6   SCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS-FMWA 64
           S +NL +L R+HA ++  GL      S +LI+ Y+      SS  VF       + ++W 
Sbjct: 16  SSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWN 75

Query: 65  VLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKC 124
            +I+ +  N  F E++  Y K+   + +   + +PSV++AC+ L D   G+ V+ +I+  
Sbjct: 76  SIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDM 135

Query: 125 GFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMF 184
           GF+ D  +  +++  Y   G L  AR+VFD+M  RD+VSW+S+I+ Y  +    E L+++
Sbjct: 136 GFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195

Query: 185 HSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKC 244
           H +    + PD  T+ S+  A G L  ++  + +HG  L+  +     + N  + MY K 
Sbjct: 196 HELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKF 255

Query: 245 GDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVL 304
                A R F +++ R + S+  MI  Y +    ++++  F++ L+ + +P+L+T+ +VL
Sbjct: 256 RRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVL 314

Query: 305 GSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNI 364
            +C  L  L   K ++  +++ G   E   +   LI+ YA+CG M     V +++  ++ 
Sbjct: 315 RACGHLRDLSLAKYIYNYMLKAGFVLE-STVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 365 LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGH 424
           +SWN +IS Y + G   EA++L   M       D  +    +S    +  L+ G  +H +
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433

Query: 425 VIKID-CKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEA 483
            IK   C D  V ++LIDMY+KCG    +  +F  +     V WN++I    + G+    
Sbjct: 434 GIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATG 493

Query: 484 INLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDM 543
           + +  QM  + +  D  TFL  +  C+++     GK +H  L+ +G   ++ I  AL +M
Sbjct: 494 LQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553

Query: 544 YAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTF 603
           Y+KCG L+ + RVF+ MS R+VV+W+ MI  YGM+G+   A   F  M  SGI P+ V F
Sbjct: 554 YSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVF 613

Query: 604 MNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP 662
           + I++ACSHSG V+EG   F  M+  + ++P ++HYAC+VDLLSRS  I  A + I +MP
Sbjct: 614 IAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMP 673

Query: 663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722
              + SIW ++L  CR    ++  + + + +     +D GY  L SN YA    WD+   
Sbjct: 674 IKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSL 733

Query: 723 VRSIMEVTGLKKVPGYSTI 741
           +R  ++   + K PGYS I
Sbjct: 734 IRKSLKDKHITKNPGYSWI 752

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/644 (34%), Positives = 356/644 (55%), Gaps = 8/644 (1%)

Query: 101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRD 160
           +L  C+++  L    + HG +   G   D  I T ++  YG FG   DAR VFD++   D
Sbjct: 50  LLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPD 106

Query: 161 VVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHG 220
              W  ++  Y  N +  E +K++  +++ G   D +      +AC EL  L   + IH 
Sbjct: 107 FYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHC 166

Query: 221 HVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQK 280
            +++     D  +    + MY+KCG++ SA + F  I  R    WT+MI+ Y ++   ++
Sbjct: 167 QLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEE 225

Query: 281 ALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALI 340
            L  F +M E     N  T  T++ +C  L  L +GK  H  +++ G+      L  +L+
Sbjct: 226 GLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELS-SCLVTSLL 284

Query: 341 EFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSF 400
           + Y +CG +S   +V +     +++ W  +I  Y   G   EAL L  +M+   + P+  
Sbjct: 285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344

Query: 401 SVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQ 460
           ++AS LS CG + +L+LG  +HG  IK+   D  V ++L+ MY+KC     A  +FE   
Sbjct: 345 TIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMES 404

Query: 461 QKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKW 520
           +K +V WNS+I GF QNG+  EA+ LFH+M    +  + VT  +   AC+++G L  G  
Sbjct: 405 EKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSS 464

Query: 521 VHHKLISYG--VRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMH 578
           +H   +  G      +++ TAL D YAKCGD Q+A+ +FD++ E+N ++WSAMI  YG  
Sbjct: 465 LHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQ 524

Query: 579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAM-RIFGVEPDLQH 637
           G    +  LF++ML    KPNE TF +IL AC H+G V EGK YF++M + +   P  +H
Sbjct: 525 GDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKH 584

Query: 638 YACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG 697
           Y CMVD+L+R+G++E A  +I  MP   +   +GA L+GC +H R D+ + + K++    
Sbjct: 585 YTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLH 644

Query: 698 TNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
            +D  YY L+SN+YA +G W++  +VR++M+  GL K+ G+ST+
Sbjct: 645 PDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTM 688

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
255542116	800	pentatricopeptide repeat-containing prot	0.998	0.925	0.661	0.0
225423549	875	PREDICTED: putative pentatricopeptide re	1.0	0.846	0.641	0.0
224101423	745	predicted protein [Populus trichocarpa]	1.0	0.994	0.620	0.0
297838697	1347	hypothetical protein ARALYDRAFT_476061 [	0.998	0.549	0.589	0.0
356497951	828	PREDICTED: putative pentatricopeptide re	0.998	0.893	0.597	0.0
18409250	787	pentatricopeptide repeat-containing prot	0.998	0.940	0.586	0.0
357487403	828	hypothetical protein MTR_5g043450 [Medic	1.0	0.894	0.587	0.0
449489376	804	PREDICTED: LOW QUALITY PROTEIN: putative	1.0	0.921	0.580	0.0
449453035	804	PREDICTED: putative pentatricopeptide re	1.0	0.921	0.580	0.0
147818712	1072	hypothetical protein VITISV_009461 [Viti	0.707	0.488	0.545	1e-176

>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/741 (66%), Positives = 606/741 (81%), Gaps = 1/741 (0%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS 60
           MPLFRSCT+LR LT LH+HLLVTGLH+DP AST+LIESY+++G L+SS+LVF+TF+ PDS
Sbjct: 5   MPLFRSCTSLRPLTLLHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDS 64

Query: 61  FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGR 120
           FMWAVLIKC++W+NF  E+I LY+KMI +Q  IS+FI+ SVLRAC+  G+L  GE+VHGR
Sbjct: 65  FMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGR 124

Query: 121 IIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEG 180
           IIK G D D V++TS+L  YG+ GCL +A+KVFD MT+RD+VSWSSII+ Y DN + SEG
Sbjct: 125 IIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEG 184

Query: 181 LKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVM 240
           L+MF  +V + VE D VTMLS+A ACGEL  LR A+S+HG ++R++I+  GPL ++ ++M
Sbjct: 185 LEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLM 244

Query: 241 YSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITL 300
           YS+C D  SAER F  +  R   SWTAMISCYNRS WF++AL+ FV+MLE K  PN +T+
Sbjct: 245 YSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTI 304

Query: 301 ITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG 360
           + VL SCAG   LREGKSVHC  + K +  + D LGPALIE+YA+ GK+S CEKV+H IG
Sbjct: 305 MAVLSSCAGFNLLREGKSVHCYAV-KHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIG 363

Query: 361 ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQ 420
           +RNI+SWNMLIS YA +G+ KEAL + VQMQ  G +PDSFS++SS+SAC NVG L LG Q
Sbjct: 364 KRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQ 423

Query: 421 IHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNS 480
           IHG+ IK    DEFVQ+SLIDMYSKCG  +LAYL+F+RIQ KSVV WNSMICGF Q GNS
Sbjct: 424 IHGYAIKRHILDEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNS 483

Query: 481 LEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTAL 540
           LEAI LF QMYLNCL+M+EVTFLTAIQACS++G LEKGKW+HHKLI+YGV+KD++IDTAL
Sbjct: 484 LEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTAL 543

Query: 541 TDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE 600
            DMYAKCGDL+ A RVFDSMSER+VVSWSAMI   GMHG ++ A SLF +M+   +KPN+
Sbjct: 544 IDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPND 603

Query: 601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS 660
           +TFMNIL ACSHSG VEEGKFYFN+M+ F VEP+L+H+ACMVDLLSR+GD++ A+++I+S
Sbjct: 604 ITFMNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFACMVDLLSRAGDLDEAYRIINS 663

Query: 661 MPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF 720
           MPFPA  SIWGALLNGCRIH+R+D+++ IE++L    T+D GYYTLLSNIYAEEGNWD  
Sbjct: 664 MPFPAEASIWGALLNGCRIHQRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVS 723

Query: 721 GKVRSIMEVTGLKKVPGYSTI 741
            KVRS M+  GLKKVPGYSTI
Sbjct: 724 RKVRSAMKGIGLKKVPGYSTI 744

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Vitis vinifera]

 Score =  997 bits (2578), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/742 (64%), Positives = 582/742 (78%), Gaps = 1/742 (0%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS 60
           MPLFR C     LT+LHAHL +TGLH  PPAST+LIESYA++G   SS+ VFDTF +PDS
Sbjct: 5   MPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDS 64

Query: 61  FMWAVLIKCYMWNNFFEESILLYHKMI-REQATISNFIYPSVLRACSSLGDLGSGEKVHG 119
           FMW VLIKCY+W  FFEE++ LYH+M+ ++Q  ISNF++PSVL+ACS  GDL  G KVHG
Sbjct: 65  FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHG 124

Query: 120 RIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSE 179
           R+IKCGF+ D V++TS+LC YGE  CLDDA K FD M  RDVV+WSSI+ ++  N   SE
Sbjct: 125 RVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASE 184

Query: 180 GLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIV 239
           GL MF  M+ E VEPD VTMLS+ EAC EL SLR  RS+HG+V+RR+I+ +  L NS IV
Sbjct: 185 GLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIV 244

Query: 240 MYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLIT 299
           MY K GDL SAER F  +  R T  WT MISCYN+SG FQ+AL  F KM E K EPN +T
Sbjct: 245 MYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVT 304

Query: 300 LITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAI 359
           ++ VL +CA LG ++EG+SVH  +IR+ M PE D+LGPAL+E YA+ G + +C KV   I
Sbjct: 305 MVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETI 364

Query: 360 GERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGL 419
            E+ ILSWN LIS + R G  +EAL L VQMQT GLMPDS+S+ASSLSACG +   QLG 
Sbjct: 365 KEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGA 424

Query: 420 QIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGN 479
           QIHG++IK    ++FVQ++LIDMY+KCGF + A  +FE+I++KS+V WNSMICGF QNG 
Sbjct: 425 QIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGY 484

Query: 480 SLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTA 539
           S+EAI LF QMY+NC++MD++TFL+ IQACS++G LEKGKWVHHKLI YG+RKD Y+DTA
Sbjct: 485 SVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTA 544

Query: 540 LTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN 599
           LTDMY+KCG+LQ A  VFD MSER++VSWS MI  YGMHGQ+N   SLF QML SGIKPN
Sbjct: 545 LTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPN 604

Query: 600 EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH 659
           ++TFM+IL ACSH+G+VEEGK YFN+M  FGVEP   H+ACMVDLLSR+GD+ GA+++I 
Sbjct: 605 DITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIIT 664

Query: 660 SMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDE 719
           S+PFPAN SIWGALLNGCRIHKRID++K+IEK L    T D GYYTLLSNIYAEEG WD+
Sbjct: 665 SLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDK 724

Query: 720 FGKVRSIMEVTGLKKVPGYSTI 741
           FGKVRS+M+  GL+KVPGYSTI
Sbjct: 725 FGKVRSMMKSKGLRKVPGYSTI 746

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa] gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/741 (62%), Positives = 583/741 (78%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS 60
           MPLFRSC  LR+L +LHAHL VT L     AST+LIESYA+MGS++SS LVF+T++ PDS
Sbjct: 5   MPLFRSCKTLRQLNQLHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDS 64

Query: 61  FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGR 120
           FMW VLIKC++W++ FEE+ILLY KM+  +A I++F++PSVLRAC+  GD+  G KVHGR
Sbjct: 65  FMWGVLIKCHVWSHAFEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIGAKVHGR 124

Query: 121 IIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEG 180
           IIKCGFD D  I+TS+L  YGE GCL DARKVFD +  RD+VSWSSII+SY D  + +E 
Sbjct: 125 IIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEA 184

Query: 181 LKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVM 240
           L+MF  +V E V+ D+V MLS+ EAC +L  L+ A+SIHG+++RR++     L NS I M
Sbjct: 185 LEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIEM 244

Query: 241 YSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITL 300
           YS C DL SAER FV +  +   SWT+MI CYNRSGWF++A E FVKMLE+K EPN+IT+
Sbjct: 245 YSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPNVITI 304

Query: 301 ITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG 360
           + VL SC+GL WLREGK +HC  ++KGM  + D LGP LIE YA CGK+  CEKV+ AIG
Sbjct: 305 MGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIG 364

Query: 361 ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQ 420
           ERN++SWN L+S  AR+G+ +EAL L VQMQ  GLM D FS++S++SACGNVGSLQLG Q
Sbjct: 365 ERNVVSWNTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQ 424

Query: 421 IHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNS 480
           IHG+ IK     EFV+++LI MYS+CGF + AY++F  I+QKS V WNS+I GF Q+GNS
Sbjct: 425 IHGYAIKRCILGEFVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNS 484

Query: 481 LEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTAL 540
           +EAI+L  QMYLNCL++ +V FL+AIQAC+++  LEKGKW+HHKLI YGV KD+YI+TAL
Sbjct: 485 IEAIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYIETAL 544

Query: 541 TDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE 600
           TDMYAKCGDL+TA+ VF SMSE++VVSWSAMI  YGMHG+++ A + F QM++ GIKPN 
Sbjct: 545 TDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAITFFNQMVELGIKPNH 604

Query: 601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS 660
           +TFMNIL ACSHSGSVE+GKFYF+ MR FGVEP  +H+AC+VDLLSR+GD+ GA+K+I+S
Sbjct: 605 ITFMNILSACSHSGSVEQGKFYFDLMRDFGVEPSSEHFACLVDLLSRAGDVNGAYKIINS 664

Query: 661 MPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF 720
           MPFPA+ S+ G LLNGCRIH+R+D++  IEK+L    T+D G+Y+LLSNIYAE GNW   
Sbjct: 665 MPFPADASVLGNLLNGCRIHQRMDMIPEIEKDLLKIRTSDTGHYSLLSNIYAEIGNWAAR 724

Query: 721 GKVRSIMEVTGLKKVPGYSTI 741
              R IME +G KKVPGYS I
Sbjct: 725 ENTRGIMERSGYKKVPGYSAI 745

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp. lyrata] gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp. lyrata]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/743 (58%), Positives = 565/743 (76%), Gaps = 3/743 (0%)

Query: 1    MPLFRSCTNLRKLTRLHAHLLVTG-LHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
            MPLFRSC++LR +++LHAHLLVTG L  DP   T+LIESYA MGS  SSRLVF+ F  PD
Sbjct: 563  MPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPD 622

Query: 60   SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACS-SLGDLGSGEKVH 118
            SFM+ VLIKC +W +  + +I LYH+++ E+  IS F++PSVLRAC+ S   L  G KVH
Sbjct: 623  SFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLSVGRKVH 682

Query: 119  GRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVS 178
            GRIIK G D D VI+TS+LC YG+ G L DA KVFD M  RD+V+WS++++S  +N +V 
Sbjct: 683  GRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVL 742

Query: 179  EGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFI 238
            + L+MF  MV +GVEPD VTM+S+ E C EL  LR ARS+HG + R+    D  L NS +
Sbjct: 743  KALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLL 802

Query: 239  VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298
             MYSKCGDLLS+E+ F KI K+   SWTAMIS YNR  + +KAL SF +ML+   EPNL+
Sbjct: 803  TMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLV 862

Query: 299  TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358
            TL ++L SC   G +REGKSVH   IR+ + P Y+ L PAL+E YAECG++ +CE ++H 
Sbjct: 863  TLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCETILHV 922

Query: 359  IGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLG 418
            +G+RNI+ WN  IS YA +GM  EAL L  QM TW + PDSF++AS +SAC N G ++LG
Sbjct: 923  VGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLG 982

Query: 419  LQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNG 478
             QIHGHVI+ D  DEFVQ+S+IDMYSK GF NLA  +F++I+ +S+V WNSM+CGF QNG
Sbjct: 983  KQIHGHVIRTDVSDEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNG 1042

Query: 479  NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDT 538
            NSLEAINLF  MY +CLE+++VTFL  IQACS+IG LEKG+WVHHKLI  G+ KD++ DT
Sbjct: 1043 NSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGI-KDLFTDT 1101

Query: 539  ALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP 598
            AL DMYAKCGDL TA+ VF +MS R++VSWS+MI+ YGMHG++  A S F QM++SG KP
Sbjct: 1102 ALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKP 1161

Query: 599  NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658
            NEV FMN+L AC HSGSVEEGK+YFN M++FGV P+ +H+AC +DLLSRSGD++ A++ I
Sbjct: 1162 NEVVFMNVLSACGHSGSVEEGKYYFNLMKLFGVSPNSEHFACFIDLLSRSGDLKEAYRTI 1221

Query: 659  HSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD 718
              MPF A+ S+WG+L+NGCRIH+++D++K I+ ++S   T+D GYYTLLSNIYAEEG W+
Sbjct: 1222 KEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDISDIVTDDTGYYTLLSNIYAEEGEWE 1281

Query: 719  EFGKVRSIMEVTGLKKVPGYSTI 741
            EF ++RS M+   LKKVPGYS I
Sbjct: 1282 EFRRMRSAMKSLNLKKVPGYSAI 1304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial-like [Glycine max]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/745 (59%), Positives = 571/745 (76%), Gaps = 5/745 (0%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS 60
           MPLFRSC+ LR L++LHAHL+VTGLH DP AST+L+ESYA MGSL SSRLVF+T   PDS
Sbjct: 5   MPLFRSCSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDS 64

Query: 61  FMWAVLIKCYMWNNFFEESILLYHKMIREQATISN---FIYPSVLRACSSLGDLGSGEKV 117
           FM+ VLIKCY+W++ F++ + LYH  I++ + ++    F+YPSV++A S +G L  G KV
Sbjct: 65  FMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKV 124

Query: 118 HGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADV 177
           HGRI+K G   D VI TS+L  YGE GCL DARKVFD++  RD+VSWSS++A Y +N   
Sbjct: 125 HGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRP 184

Query: 178 SEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSF 237
            EGL+M   MV EGV PD VTMLS+AEACG++  LR A+S+HG+V+R+++  D  L NS 
Sbjct: 185 REGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSL 244

Query: 238 IVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL 297
           IVMY +C  L  A+  F  +    T  WT+MIS  N++G F++A+++F KM E + E N 
Sbjct: 245 IVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNA 304

Query: 298 ITLITVLGSCAGLGWLREGKSVHCQIIRKGM-GPEYDYLGPALIEFYAECGKMSECEKVI 356
           +T+I+VL  CA LGWL+EGKSVHC I+R+ M G + D LGPAL++FYA C K+S CEK++
Sbjct: 305 VTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLD-LGPALMDFYAACWKISSCEKLL 363

Query: 357 HAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQ 416
             IG  +++SWN LIS YAR+G+++EA+ L V M   GLMPDSFS+ASS+SAC    S++
Sbjct: 364 CLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVR 423

Query: 417 LGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQ 476
            G QIHGHV K    DEFVQ+SL+DMYSKCGF +LAY +F++I +KS+V WN MICGF Q
Sbjct: 424 FGQQIHGHVTKRGFADEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQ 483

Query: 477 NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYI 536
           NG S+EA+ LF +M  NC++++EVTFL+AIQACSN G L KGKW+HHKL+  GV+KD+YI
Sbjct: 484 NGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYI 543

Query: 537 DTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGI 596
           DTAL DMYAKCGDL+TAQ VF+SM E++VVSWSAMI  YG+HGQ+  A +LF +M++S I
Sbjct: 544 DTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHI 603

Query: 597 KPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFK 656
           KPNEVTFMNIL AC H+GSVEEGKFYFN+MR +G+ P+ +H+A +VDLLSR+GDI+GA++
Sbjct: 604 KPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGIVPNAEHFASIVDLLSRAGDIDGAYE 663

Query: 657 MIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN 716
           +I S     + SIWGALLNGCRIH R+D++  I KEL    TND GYYTLLSNIYAE GN
Sbjct: 664 IIKSTCQHIDASIWGALLNGCRIHGRMDLIHNIHKELREIRTNDTGYYTLLSNIYAEGGN 723

Query: 717 WDEFGKVRSIMEVTGLKKVPGYSTI 741
           W E  KVRS ME  GLKKVPGYS+I
Sbjct: 724 WYESRKVRSRMEGMGLKKVPGYSSI 748

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial; Flags: Precursor gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana] gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana] gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/743 (58%), Positives = 560/743 (75%), Gaps = 3/743 (0%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTG-LHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
           MPLFRSC++LR +++LHAHLLVTG L  DP   T+LIESYA MGS  SSRLVF+ F  PD
Sbjct: 5   MPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPD 64

Query: 60  SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACS-SLGDLGSGEKVH 118
           SFM+ VLIKC +W +  + +I LYH+++ E   IS F++PSVLRAC+ S   L  G KVH
Sbjct: 65  SFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVH 124

Query: 119 GRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVS 178
           GRIIK G D D VI+TS+LC YG+ G L DA KVFD M  RD+V+WS++++S  +N +V 
Sbjct: 125 GRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVV 184

Query: 179 EGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFI 238
           + L+MF  MV +GVEPD VTM+S+ E C EL  LR ARS+HG + R+   +D  L NS +
Sbjct: 185 KALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLL 244

Query: 239 VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298
            MYSKCGDLLS+ER F KI K+   SWTAMIS YNR  + +KAL SF +M++   EPNL+
Sbjct: 245 TMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLV 304

Query: 299 TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358
           TL +VL SC  +G +REGKSVH   +R+ + P Y+ L  AL+E YAECGK+S+CE V+  
Sbjct: 305 TLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRV 364

Query: 359 IGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLG 418
           + +RNI++WN LIS YA +GM  +AL L  QM T  + PD+F++ASS+SAC N G + LG
Sbjct: 365 VSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLG 424

Query: 419 LQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNG 478
            QIHGHVI+ D  DEFVQ+SLIDMYSK G  + A  +F +I+ +SVV WNSM+CGF QNG
Sbjct: 425 KQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNG 484

Query: 479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDT 538
           NS+EAI+LF  MY + LEM+EVTFL  IQACS+IG LEKGKWVHHKLI  G+ KD++ DT
Sbjct: 485 NSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDT 543

Query: 539 ALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP 598
           AL DMYAKCGDL  A+ VF +MS R++VSWS+MI+ YGMHG++  A S F QM++SG KP
Sbjct: 544 ALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKP 603

Query: 599 NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658
           NEV FMN+L AC HSGSVEEGK+YFN M+ FGV P+ +H+AC +DLLSRSGD++ A++ I
Sbjct: 604 NEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTI 663

Query: 659 HSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD 718
             MPF A+ S+WG+L+NGCRIH+++D++K I+ +LS   T+D GYYTLLSNIYAEEG W+
Sbjct: 664 KEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWE 723

Query: 719 EFGKVRSIMEVTGLKKVPGYSTI 741
           EF ++RS M+ + LKKVPGYS I
Sbjct: 724 EFRRLRSAMKSSNLKKVPGYSAI 746

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula] gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/745 (58%), Positives = 576/745 (77%), Gaps = 4/745 (0%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS 60
           MPLFR+C+ LR+LT+LHAHL+VT LH +P AST+L+ESY++MGSL+SSRLVF T   PDS
Sbjct: 5   MPLFRTCSTLRRLTQLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDS 64

Query: 61  FMWAVLIKCYMWNNFFEESILLYHKMIREQATISN---FIYPSVLRACSSLGDLGSGEKV 117
           FM++VLIKC++WN+ F E + L++  I+  + ++    F+YPSV+RA + +G+L  G K+
Sbjct: 65  FMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKL 124

Query: 118 HGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADV 177
           HGRI+K GF +D VI TS++  YGE   L DA+KVFD+M  RD+V WSSII+ Y +N   
Sbjct: 125 HGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVY 184

Query: 178 SEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSF 237
            EGL+MF SM+ EG+ PD V +LS+AEACG++  LR A+S+HG+V+R  +  DG L NS 
Sbjct: 185 REGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSL 244

Query: 238 IVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL 297
           IVMYS+CG L  A+R F  I+ R T+ WT+MIS YN++  F++AL+ F+KM + + EPN 
Sbjct: 245 IVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPND 304

Query: 298 ITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIH 357
           +T+I+VL SCA LG L+EGKSVHC ++R  MG     LGPALI+FY+ C KMS CEK++H
Sbjct: 305 VTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLH 364

Query: 358 AIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQL 417
           +IG  NI+SWN LIS YAR+G++ EA+     M   G+MPDSFS+ASS+SA  + GS+Q 
Sbjct: 365 SIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQF 424

Query: 418 GLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQN 477
           G QIHGHV+K    DEFVQ+SL+DMYSKCGF + AY +F +I+ KS+V WN MICGF QN
Sbjct: 425 GQQIHGHVMKRGFFDEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQN 484

Query: 478 GNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYID 537
           G S+EA++LF +M+ N LE+++VTFL+AIQACSN+G L+KGKW+HHK+I  G + D+YID
Sbjct: 485 GISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYID 544

Query: 538 TALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK 597
           TAL DMYAKCGDLQTAQ+VFDS+ E++VVSWS MI  +G+HGQ+N A SLF +M+ S IK
Sbjct: 545 TALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIK 604

Query: 598 PNEVTFMNILWACSHSGSVEEGKFYFNAMR-IFGVEPDLQHYACMVDLLSRSGDIEGAFK 656
           PNEVTFMNIL AC H+GSV+EGKFYFN MR  +G+ P+++H+A +VDLLSR+GDI GA++
Sbjct: 605 PNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYE 664

Query: 657 MIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN 716
           +I S+  P   SIWGALLNGCRI+ R+D+++ I +EL    T+D GYYTLLSNIYAE GN
Sbjct: 665 IIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEELGGISTDDTGYYTLLSNIYAEGGN 724

Query: 717 WDEFGKVRSIMEVTGLKKVPGYSTI 741
           W E  KVRS ME  GLKKVPGYST+
Sbjct: 725 WYESRKVRSKMEGMGLKKVPGYSTV 749

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial-like [Cucumis sativus]

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/741 (58%), Positives = 561/741 (75%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS 60
           MPLF++ T LR+L +LHAH++VT LH DP  ST+LIESY+++G L+SS  VF TF  PDS
Sbjct: 5   MPLFKASTTLRQLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDS 64

Query: 61  FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGR 120
           FMW VL+K ++WN  ++E+I LYH+M+ +Q   +++ +PSVLRACS  GDLG G++VHGR
Sbjct: 65  FMWGVLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGR 124

Query: 121 IIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEG 180
           IIK GFD D V+ T++L  YGE G LD ARKVF +M  RD+VSWSSII+S  +N +++EG
Sbjct: 125 IIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEG 184

Query: 181 LKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVM 240
           L  F  MV EG  PD V +L++ EACGEL  LR A+S HG++L+R I+ D  + +S I M
Sbjct: 185 LDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFM 244

Query: 241 YSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITL 300
           Y+KCG L SAE  F  +  R T++WTAMIS YN  G+ ++AL  FV M + + EPN +T+
Sbjct: 245 YAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTM 304

Query: 301 ITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG 360
             +L SC  L  LREGKSVHC +I+  +    D LGP L+E YA   K   CEK++H IG
Sbjct: 305 RIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIG 364

Query: 361 ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQ 420
            R I  WN LIS YA+KG+ KE ++L V+MQ  G MPDSFS+ASSLSA GN G LQLGLQ
Sbjct: 365 GRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQ 424

Query: 421 IHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNS 480
           IHGHVIK    DE+V +SLI+MYSKCG+ +LAY++F++++ K VV WNSMI G  QNG S
Sbjct: 425 IHGHVIKRPFMDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYS 484

Query: 481 LEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTAL 540
            +AI+LF  MY+ C E+ EV F++ IQACS++G LEKGKW+HHKLI+ GVRK I+I+TAL
Sbjct: 485 TKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETAL 544

Query: 541 TDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE 600
            DMYAKCGDLQTAQRVFD+MSER+VVSWS++I  YG+HGQ+++   LF +ML+SGIKPN+
Sbjct: 545 VDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPND 604

Query: 601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS 660
           VT MN+L ACSH+G V+EG  +FN+MR FG+EP  +H+ C+VDLLSR+GD++ A+++I  
Sbjct: 605 VTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKL 664

Query: 661 MPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF 720
           MPFP   SIWGALLNGCRIH+R+D+ K I++EL    T+D G+YTLLSNIYA  G W+EF
Sbjct: 665 MPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEF 724

Query: 721 GKVRSIMEVTGLKKVPGYSTI 741
           G+VRS+M+ TGLKKVP YS +
Sbjct: 725 GEVRSMMKGTGLKKVPAYSVV 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial-like [Cucumis sativus]

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/741 (58%), Positives = 560/741 (75%)

Query: 1   MPLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS 60
           MPLF++ T LR L +LHAH++VT LH DP  ST+LIESY+++G L+SS  VF TF  PDS
Sbjct: 5   MPLFKASTTLRTLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDS 64

Query: 61  FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGR 120
           FMW VL+K ++WN  ++E+I LYH+M+ +Q   +++ +PSVLRACS  GDLG G++VHGR
Sbjct: 65  FMWGVLLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGR 124

Query: 121 IIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEG 180
           IIK GFD D V+ T++L  YGE G LD ARKVF +M  RD+VSWSSII+S  +N +++EG
Sbjct: 125 IIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEG 184

Query: 181 LKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVM 240
           L  F  MV EG  PD V +L++ EACGEL  LR A+S HG++L+R I+ D  + +S I M
Sbjct: 185 LDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFM 244

Query: 241 YSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITL 300
           Y+KCG L SAE  F  +  R T++WTAMIS YN  G+ ++AL  FV M + + EPN +T+
Sbjct: 245 YAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTM 304

Query: 301 ITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG 360
             +L SC  L  LREGKSVHC +I+  +    D LGP L+E YA   K   CEK++H IG
Sbjct: 305 RIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIG 364

Query: 361 ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQ 420
            R I  WN LIS YA+KG+ KE ++L V+MQ  G MPDSFS+ASSLSA GN G LQLGLQ
Sbjct: 365 GRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQ 424

Query: 421 IHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNS 480
           IHGHVIK    DE+V +SLI+MYSKCG+ +LAY++F++++ K VV WNSMI G  QNG S
Sbjct: 425 IHGHVIKRPFMDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYS 484

Query: 481 LEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTAL 540
            +AI+LF  MY+ C E+ EV F++ IQACS++G LEKGKW+HHKLI+ GVRK I+I+TAL
Sbjct: 485 TKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETAL 544

Query: 541 TDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE 600
            DMYAKCGDLQTAQRVFD+MSER+VVSWS++I  YG+HGQ+++   LF +ML+SGIKPN+
Sbjct: 545 VDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPND 604

Query: 601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS 660
           VT MN+L ACSH+G V+EG  +FN+MR FG+EP  +H+ C+VDLLSR+GD++ A+++I  
Sbjct: 605 VTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKL 664

Query: 661 MPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF 720
           MPFP   SIWGALLNGCRIH+R+D+ K I++EL    T+D G+YTLLSNIYA  G W+EF
Sbjct: 665 MPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEF 724

Query: 721 GKVRSIMEVTGLKKVPGYSTI 741
           G+VRS+M+ TGLKKVP YS +
Sbjct: 725 GEVRSMMKGTGLKKVPAYSVV 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 315/577 (54%), Positives = 400/577 (69%), Gaps = 53/577 (9%)

Query: 218 IHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGW 277
           +H H+    +    P     I  Y++ G   S++R F    K  +  W  +I CY   G+
Sbjct: 367 LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGF 426

Query: 278 FQKA---------------------------------------------LESFVKMLEVK 292
           F++A                                             L+ F +M+   
Sbjct: 427 FEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEA 486

Query: 293 EEPNLITLITVLGSCAGLGWLR--------EGKSVHCQIIRKGMGPEYDYLGPALIEFYA 344
            EP+ +T+++V  +C+ LG LR        EG+SVH  +IR+ M PE D+LGPAL+E YA
Sbjct: 487 VEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYA 546

Query: 345 ECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVAS 404
           + G + +C KV   I E+ ILSWN LIS + R G  +EAL L VQMQT GLMPDS+S+AS
Sbjct: 547 DTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLAS 606

Query: 405 SLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV 464
           SLSACG +   QLG QIHG++IK    ++FVQ++LIDMY+KCGF + A  +FE+I++KS+
Sbjct: 607 SLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSL 666

Query: 465 VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHK 524
           V WNSMICGF QNG S+EAI LF QMY+NC++MD++TFL+ IQACS++G LEKGKWVHHK
Sbjct: 667 VTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHK 726

Query: 525 LISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDA 584
           LI YG+RKD Y+DTALTDMY+KCG+LQ A  VFD MSER++VSWS MI  YGMHGQ+N  
Sbjct: 727 LIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINAT 786

Query: 585 ASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDL 644
            SLF QML SGIKPN++TFM+IL ACSH+G+VEEGK YFN+M  FGVEP   H+ACMVDL
Sbjct: 787 ISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDL 846

Query: 645 LSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYY 704
           LSR+GD+ GA+++I S+PFPAN SIWGALLNGCRIHKRID++K+IEK L    T D GYY
Sbjct: 847 LSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYY 906

Query: 705 TLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
           TLLSNIYAEEG WD+FGKVRS+M+  GL+KVPGYSTI
Sbjct: 907 TLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTI 943

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	741
TAIR|locus:2007116	787	AT1G69350 "AT1G69350" [Arabido	0.998	0.940	0.586	3.3e-237
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.995	0.861	0.313	1.3e-114
TAIR|locus:505006130	970	AT1G18485 [Arabidopsis thalian	0.971	0.742	0.323	4.5e-114
TAIR|locus:2122551	834	AT4G39530 [Arabidopsis thalian	0.978	0.869	0.327	4.1e-113
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.913	0.760	0.333	3.5e-107
TAIR|locus:2096414	882	AT3G03580 [Arabidopsis thalian	0.990	0.832	0.313	4e-106
TAIR|locus:2196583	866	ECB2 "EARLY CHLOROPLAST BIOGEN	0.898	0.769	0.335	1.7e-105
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.865	0.735	0.331	1.6e-104
TAIR|locus:2063771	689	AT2G03380 [Arabidopsis thalian	0.858	0.923	0.341	2e-104
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.859	0.787	0.331	2.5e-104

TAIR|locus:2007116 AT1G69350 "AT1G69350" [Arabidopsis thaliana (taxid:3702)]

 Score = 2287 (810.1 bits), Expect = 3.3e-237, P = 3.3e-237
 Identities = 436/743 (58%), Positives = 560/743 (75%)

Query:     1 MPLFRSCTNLRKLTRLHAHLLVTG-LHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
             MPLFRSC++LR +++LHAHLLVTG L  DP   T+LIESYA MGS  SSRLVF+ F  PD
Sbjct:     5 MPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPD 64

Query:    60 SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACS-SLGDLGSGEKVH 118
             SFM+ VLIKC +W +  + +I LYH+++ E   IS F++PSVLRAC+ S   L  G KVH
Sbjct:    65 SFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVH 124

Query:   119 GRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVS 178
             GRIIK G D D VI+TS+LC YG+ G L DA KVFD M  RD+V+WS++++S  +N +V 
Sbjct:   125 GRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVV 184

Query:   179 EGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFI 238
             + L+MF  MV +GVEPD VTM+S+ E C EL  LR ARS+HG + R+   +D  L NS +
Sbjct:   185 KALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLL 244

Query:   239 VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298
              MYSKCGDLLS+ER F KI K+   SWTAMIS YNR  + +KAL SF +M++   EPNL+
Sbjct:   245 TMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLV 304

Query:   299 TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358
             TL +VL SC  +G +REGKSVH   +R+ + P Y+ L  AL+E YAECGK+S+CE V+  
Sbjct:   305 TLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRV 364

Query:   359 IGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLG 418
             + +RNI++WN LIS YA +GM  +AL L  QM T  + PD+F++ASS+SAC N G + LG
Sbjct:   365 VSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLG 424

Query:   419 LQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNG 478
              QIHGHVI+ D  DEFVQ+SLIDMYSK G  + A  +F +I+ +SVV WNSM+CGF QNG
Sbjct:   425 KQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNG 484

Query:   479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDT 538
             NS+EAI+LF  MY + LEM+EVTFL  IQACS+IG LEKGKWVHHKLI  G+ KD++ DT
Sbjct:   485 NSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDT 543

Query:   539 ALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP 598
             AL DMYAKCGDL  A+ VF +MS R++VSWS+MI+ YGMHG++  A S F QM++SG KP
Sbjct:   544 ALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKP 603

Query:   599 NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658
             NEV FMN+L AC HSGSVEEGK+YFN M+ FGV P+ +H+AC +DLLSRSGD++ A++ I
Sbjct:   604 NEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTI 663

Query:   659 HSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD 718
               MPF A+ S+WG+L+NGCRIH+++D++K I+ +LS   T+D GYYTLLSNIYAEEG W+
Sbjct:   664 KEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWE 723

Query:   719 EFGKVRSIMEVTGLKKVPGYSTI 741
             EF ++RS M+ + LKKVPGYS I
Sbjct:   724 EFRRLRSAMKSSNLKKVPGYSAI 746

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
 Identities = 234/747 (31%), Positives = 414/747 (55%)

Query:     3 LFRSCTN---LRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
             L ++C+N   LR+  ++HA L+V  +  D     R++  YA  GS      +F       
Sbjct:    41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100

Query:    60 SFM--WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKV 117
             S +  W  +I  ++ N    +++  Y KM+    +     +P +++AC +L +    + +
Sbjct:   101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160

Query:   118 HGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADV 177
                +   G D ++ + +S++  Y E+G +D   K+FD++  +D V W+ ++  Y     +
Sbjct:   161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220

Query:   178 SEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSF 237
                +K F  M  + + P+ VT   +   C     +     +HG V+   +  +G + NS 
Sbjct:   221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280

Query:   238 IVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL 297
             + MYSKCG    A + F  + +  T +W  MIS Y +SG  +++L  F +M+     P+ 
Sbjct:   281 LSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDA 340

Query:   298 ITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIH 357
             IT  ++L S +    L   K +HC I+R  +  +  +L  ALI+ Y +C  +S  + +  
Sbjct:   341 ITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDI-FLTSALIDAYFKCRGVSMAQNIFS 399

Query:   358 AIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQL 417
                  +++ +  +IS Y   G+  ++LE+   +    + P+  ++ S L   G + +L+L
Sbjct:   400 QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKL 459

Query:   418 GLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQ 476
             G ++HG +IK    +   +  ++IDMY+KCG  NLAY +FER+ ++ +V WNSMI    Q
Sbjct:   460 GRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQ 519

Query:   477 NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYI 536
             + N   AI++F QM ++ +  D V+   A+ AC+N+     GK +H  +I + +  D+Y 
Sbjct:   520 SDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYS 579

Query:   537 DTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLD-SG 595
             ++ L DMYAKCG+L+ A  VF +M E+N+VSW+++I   G HG+L D+  LF +M++ SG
Sbjct:   580 ESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 639

Query:   596 IKPNEVTFMNILWACSHSGSVEEGKFYFNAM-RIFGVEPDLQHYACMVDLLSRSGDIEGA 654
             I+P+++TF+ I+ +C H G V+EG  +F +M   +G++P  +HYAC+VDL  R+G +  A
Sbjct:   640 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 699

Query:   655 FKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE 714
             ++ + SMPFP +  +WG LL  CR+HK +++ +    +L     +++GYY L+SN +A  
Sbjct:   700 YETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 759

Query:   715 GNWDEFGKVRSIMEVTGLKKVPGYSTI 741
               W+   KVRS+M+   ++K+PGYS I
Sbjct:   760 REWESVTKVRSLMKEREVQKIPGYSWI 786

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)]

 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 239/738 (32%), Positives = 407/738 (55%)

Query:    19 HLLVTG---LHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNF 75
             H LV+G   L  D    TR+I  YA  GS   SR VFD  +  + F W  +I  Y  N  
Sbjct:   107 HQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNEL 166

Query:    76 FEESILLYHKMIREQATI-SNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQT 134
             ++E +  + +MI     +  +F YP V++AC+ + D+G G  VHG ++K G  +D  +  
Sbjct:   167 YDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN 226

Query:   135 SILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVE- 193
             +++  YG  G + DA ++FD M  R++VSW+S+I  + DN    E   +   M+ E  + 
Sbjct:   227 ALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDG 286

Query:   194 ---PDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSA 250
                PD  T++++   C     +   + +HG  ++ ++  +  L N+ + MYSKCG + +A
Sbjct:   287 AFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA 346

Query:   251 ERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL--ITLITVLGSCA 308
             +  F     +   SW  M+  ++  G      +   +ML   E+     +T++  +  C 
Sbjct:   347 QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCF 406

Query:   309 GLGWLREGKSVHCQIIRKGMGPEYDYL-GPALIEFYAECGKMSECEKVIHAIGERNILSW 367
                +L   K +HC  +++     Y+ L   A +  YA+CG +S  ++V H I  + + SW
Sbjct:   407 HESFLPSLKELHCYSLKQEF--VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 464

Query:   368 NMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIK 427
             N LI  +A+    + +L+  +QM+  GL+PDSF+V S LSAC  + SL+LG ++HG +I+
Sbjct:   465 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 524

Query:   428 --IDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAIN 485
               ++ +D FV  S++ +Y  CG       LF+ ++ KS+V WN++I G+ QNG    A+ 
Sbjct:   525 NWLE-RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583

Query:   486 LFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA 545
             +F QM L  +++  ++ +    ACS +  L  G+  H   + + +  D +I  +L DMYA
Sbjct:   584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYA 643

Query:   546 KCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMN 605
             K G +  + +VF+ + E++  SW+AMI  YG+HG   +A  LF++M  +G  P+++TF+ 
Sbjct:   644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703

Query:   606 ILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFKMI-HSMPF 663
             +L AC+HSG + EG  Y + M+  FG++P+L+HYAC++D+L R+G ++ A +++   M  
Sbjct:   704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763

Query:   664 PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKV 723
              A+  IW +LL+ CRIH+ +++ + +  +L          Y LLSN+YA  G W++  KV
Sbjct:   764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823

Query:   724 RSIMEVTGLKKVPGYSTI 741
             R  M    L+K  G S I
Sbjct:   824 RQRMNEMSLRKDAGCSWI 841

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
 Identities = 240/733 (32%), Positives = 400/733 (54%)

Query:    16 LHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNF 75
             +H  ++V GL  D   S  LI  Y+  G +  +R VF+   E +   W+ ++     +  
Sbjct:    66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query:    76 FEESILLYHKMIREQATISN-FIYPSVLRACSSLGDLGSGE--KVHGRIIKCGFDKDDVI 132
             +EES++++ +  R +    N +I  S ++ACS L   G     ++   ++K GFD+D  +
Sbjct:   126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query:   133 QTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGV 192
              T ++  Y + G +D AR VFD +  +  V+W+++I+           L++F+ ++ + V
Sbjct:   186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query:   193 EPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAER 252
              PD   + ++  AC  L  L   + IH H+LR  +++D  L N  I  Y KCG +++A +
Sbjct:   246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHK 305

Query:   253 TFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGW 312
              F  +  +   SWT ++S Y ++   ++A+E F  M +   +P++    ++L SCA L  
Sbjct:   306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365

Query:   313 LREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLIS 372
             L  G  VH   I+  +G +  Y+  +LI+ YA+C  +++  KV       +++ +N +I 
Sbjct:   366 LGFGTQVHAYTIKANLGND-SYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIE 424

Query:   373 EYARKGMS---KEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKID 429
              Y+R G      EAL +   M+   + P   +  S L A  ++ SL L  QIHG + K  
Sbjct:   425 GYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYG 484

Query:   430 CK-DEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFH 488
                D F  S+LID+YS C     + L+F+ ++ K +V+WNSM  G+ Q   + EA+NLF 
Sbjct:   485 LNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFL 544

Query:   489 QMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCG 548
             ++ L+    DE TF   + A  N+  ++ G+  H +L+  G+  + YI  AL DMYAKCG
Sbjct:   545 ELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG 604

Query:   549 DLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW 608
               + A + FDS + R+VV W+++I  Y  HG+   A  + ++M+  GI+PN +TF+ +L 
Sbjct:   605 SPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLS 664

Query:   609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGS 668
             ACSH+G VE+G   F  M  FG+EP+ +HY CMV LL R+G +  A ++I  MP      
Sbjct:   665 ACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAI 724

Query:   669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME 728
             +W +LL+GC     +++ +   +   ++   D+G +T+LSNIYA +G W E  KVR  M+
Sbjct:   725 VWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMK 784

Query:   729 VTGLKKVPGYSTI 741
             V G+ K PG S I
Sbjct:   785 VEGVVKEPGRSWI 797

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 233/699 (33%), Positives = 394/699 (56%)

Query:    63 WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRII 122
             W  L++  + +N   E++L Y  MI       N+ +P++L+A + L D+  G+++H  + 
Sbjct:    65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query:   123 KCGFDKDDV-IQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGL 181
             K G+  D V +  +++  Y + G      KVFD+++ R+ VSW+S+I+S          L
Sbjct:   125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query:   182 KMFHSMVREGVEPDFVTMLSLAEACGELC---SLRPARSIHGHVLRRKIKIDGPLGNSFI 238
             + F  M+ E VEP   T++S+  AC  L     L   + +H + LR K +++  + N+ +
Sbjct:   185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLV 243

Query:   239 VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298
              MY K G L S++        R   +W  ++S   ++    +ALE   +M+    EP+  
Sbjct:   244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query:   299 TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358
             T+ +VL +C+ L  LR GK +H   ++ G   E  ++G AL++ Y  C ++    +V   
Sbjct:   304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query:   359 IGERNILSWNMLISEYARKGMSKEALELLVQMQ-TWGLMPDSFSVASSLSACGNVGSLQL 417
             + +R I  WN +I+ Y++    KEAL L + M+ + GL+ +S ++A  + AC   G+   
Sbjct:   364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query:   418 GLQIHGHVIK--IDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFY 475
                IHG V+K  +D +D FVQ++L+DMYS+ G  ++A  +F +++ + +V WN+MI G+ 
Sbjct:   424 KEAIHGFVVKRGLD-RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query:   476 QNGNSLEAINLFHQMY-LN----------CLEMDEVTFLTAIQACSNIGQLEKGKWVHHK 524
              + +  +A+ L H+M  L            L+ + +T +T + +C+ +  L KGK +H  
Sbjct:   483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542

Query:   525 LISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDA 584
              I   +  D+ + +AL DMYAKCG LQ +++VFD + ++NV++W+ +I  YGMHG   +A
Sbjct:   543 AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEA 602

Query:   585 ASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVD 643
               L + M+  G+KPNEVTF+++  ACSHSG V+EG   F  M+  +GVEP   HYAC+VD
Sbjct:   603 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVD 662

Query:   644 LLSRSGDIEGAFKMIHSMPFPAN-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702
             LL R+G I+ A+++++ MP   N    W +LL   RIH  +++ +   + L     N   
Sbjct:   663 LLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVAS 722

Query:   703 YYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
             +Y LL+NIY+  G WD+  +VR  M+  G++K PG S I
Sbjct:   723 HYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 232/739 (31%), Positives = 393/739 (53%)

Query:     6 SCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS-FMWA 64
             S +NL +L R+HA ++  GL      S +LI+ Y+      SS  VF       + ++W 
Sbjct:    16 SSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWN 75

Query:    65 VLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKC 124
              +I+ +  N  F E++  Y K+   + +   + +PSV++AC+ L D   G+ V+ +I+  
Sbjct:    76 SIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDM 135

Query:   125 GFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMF 184
             GF+ D  +  +++  Y   G L  AR+VFD+M  RD+VSW+S+I+ Y  +    E L+++
Sbjct:   136 GFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY 195

Query:   185 HSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKC 244
             H +    + PD  T+ S+  A G L  ++  + +HG  L+  +     + N  + MY K 
Sbjct:   196 HELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKF 255

Query:   245 GDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVL 304
                  A R F +++ R + S+  MI  Y +    ++++  F++ L+ + +P+L+T+ +VL
Sbjct:   256 RRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVL 314

Query:   305 GSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNI 364
              +C  L  L   K ++  +++ G   E   +   LI+ YA+CG M     V +++  ++ 
Sbjct:   315 RACGHLRDLSLAKYIYNYMLKAGFVLE-STVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query:   365 LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGH 424
             +SWN +IS Y + G   EA++L   M       D  +    +S    +  L+ G  +H +
Sbjct:   374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433

Query:   425 VIKID-CKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEA 483
              IK   C D  V ++LIDMY+KCG    +  +F  +     V WN++I    + G+    
Sbjct:   434 GIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATG 493

Query:   484 INLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDM 543
             + +  QM  + +  D  TFL  +  C+++     GK +H  L+ +G   ++ I  AL +M
Sbjct:   494 LQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553

Query:   544 YAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTF 603
             Y+KCG L+ + RVF+ MS R+VV+W+ MI  YGM+G+   A   F  M  SGI P+ V F
Sbjct:   554 YSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVF 613

Query:   604 MNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP 662
             + I++ACSHSG V+EG   F  M+  + ++P ++HYAC+VDLLSRS  I  A + I +MP
Sbjct:   614 IAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMP 673

Query:   663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722
                + SIW ++L  CR    ++  + + + +     +D GY  L SN YA    WD+   
Sbjct:   674 IKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSL 733

Query:   723 VRSIMEVTGLKKVPGYSTI 741
             +R  ++   + K PGYS I
Sbjct:   734 IRKSLKDKHITKNPGYSWI 752

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 225/671 (33%), Positives = 359/671 (53%)

Query:    73 NNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVI 132
             N   EE++ L + M   +  +   ++ +++R C        G KV+   +         +
Sbjct:    72 NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVEL 131

Query:   133 QTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREG- 191
               + L  +  FG L DA  VF KM+ R++ SW+ ++  Y       E + ++H M+  G 
Sbjct:   132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGG 191

Query:   192 VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAE 251
             V+PD  T   +   CG +  L   + +H HV+R   ++D  + N+ I MY KCGD+ SA 
Sbjct:   192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251

Query:   252 RTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLG 311
               F ++ +R   SW AMIS Y  +G   + LE F  M  +  +P+L+TL +V+ +C  LG
Sbjct:   252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311

Query:   312 WLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLI 371
               R G+ +H  +I  G   +      +L + Y   G   E EK+   +  ++I+SW  +I
Sbjct:   312 DRRLGRDIHAYVITTGFAVDISVCN-SLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMI 370

Query:   372 SEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK 431
             S Y    +  +A++    M    + PD  +VA+ LSAC  +G L  G+++H   IK    
Sbjct:   371 SGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLI 430

Query:   432 DE-FVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQM 490
                 V ++LI+MYSKC   + A  +F  I +K+V+ W S+I G   N    EA+    QM
Sbjct:   431 SYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM 490

Query:   491 YLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDL 550
              +  L+ + +T   A+ AC+ IG L  GK +H  ++  GV  D ++  AL DMY +CG +
Sbjct:   491 KMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRM 549

Query:   551 QTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWAC 610
              TA   F+S  +++V SW+ ++  Y   GQ +    LF +M+ S ++P+E+TF+++L  C
Sbjct:   550 NTAWSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGC 608

Query:   611 SHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIW 670
             S S  V +G  YF+ M  +GV P+L+HYAC+VDLL R+G+++ A K I  MP   + ++W
Sbjct:   609 SKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVW 668

Query:   671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730
             GALLN CRIH +ID+ +   + +        GYY LL N+YA+ G W E  KVR +M+  
Sbjct:   669 GALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKEN 728

Query:   731 GLKKVPGYSTI 741
             GL    G S +
Sbjct:   729 GLTVDAGCSWV 739

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 214/645 (33%), Positives = 372/645 (57%)

Query:   100 SVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSR 159
             SVL+ C+    L  G++V   I   GF  D  + + +   Y   G L +A +VFD++   
Sbjct:    99 SVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIE 158

Query:   160 DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIH 219
               + W+ ++     + D S  + +F  M+  GVE D  T   ++++   L S+     +H
Sbjct:   159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218

Query:   220 GHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQ 279
             G +L+        +GNS +  Y K   + SA + F ++ +R   SW ++I+ Y  +G  +
Sbjct:   219 GFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAE 278

Query:   280 KALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPAL 339
             K L  FV+ML    E +L T+++V   CA    +  G++VH   ++     E D     L
Sbjct:   279 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE-DRFCNTL 337

Query:   340 IEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS 399
             ++ Y++CG +   + V   + +R+++S+  +I+ YAR+G++ EA++L  +M+  G+ PD 
Sbjct:   338 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 397

Query:   400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-DEFVQSSLIDMYSKCGFKNLAYLLFER 458
             ++V + L+ C     L  G ++H  + + D   D FV ++L+DMY+KCG    A L+F  
Sbjct:   398 YTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSE 457

Query:   459 IQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNC-LEMDEVTFLTAIQACSNIGQLEK 517
             ++ K ++ WN++I G+ +N  + EA++LF+ +        DE T    + AC+++   +K
Sbjct:   458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517

Query:   518 GKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGM 577
             G+ +H  ++  G   D ++  +L DMYAKCG L  A  +FD ++ +++VSW+ MI  YGM
Sbjct:   518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577

Query:   578 HGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQ 636
             HG   +A +LF QM  +GI+ +E++F+++L+ACSHSG V+EG  +FN MR    +EP ++
Sbjct:   578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637

Query:   637 HYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVT 696
             HYAC+VD+L+R+GD+  A++ I +MP P + +IWGALL GCRIH  + + + + +++   
Sbjct:   638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697

Query:   697 GTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
                + GYY L++NIYAE   W++  ++R  +   GL+K PG S I
Sbjct:   698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 742

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2063771 AT2G03380 [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 220/644 (34%), Positives = 356/644 (55%)

Query:   101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRD 160
             +L  C+++  L    + HG +   G   D  I T ++  YG FG   DAR VFD++   D
Sbjct:    50 LLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPD 106

Query:   161 VVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHG 220
                W  ++  Y  N +  E +K++  +++ G   D +      +AC EL  L   + IH 
Sbjct:   107 FYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHC 166

Query:   221 HVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQK 280
              +++     D  +    + MY+KCG++ SA + F  I  R    WT+MI+ Y ++   ++
Sbjct:   167 QLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEE 225

Query:   281 ALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALI 340
              L  F +M E     N  T  T++ +C  L  L +GK  H  +++ G+      L  +L+
Sbjct:   226 GLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELS-SCLVTSLL 284

Query:   341 EFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSF 400
             + Y +CG +S   +V +     +++ W  +I  Y   G   EAL L  +M+   + P+  
Sbjct:   285 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCV 344

Query:   401 SVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQ 460
             ++AS LS CG + +L+LG  +HG  IK+   D  V ++L+ MY+KC     A  +FE   
Sbjct:   345 TIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMES 404

Query:   461 QKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKW 520
             +K +V WNS+I GF QNG+  EA+ LFH+M    +  + VT  +   AC+++G L  G  
Sbjct:   405 EKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSS 464

Query:   521 VHHKLISYG--VRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMH 578
             +H   +  G      +++ TAL D YAKCGD Q+A+ +FD++ E+N ++WSAMI  YG  
Sbjct:   465 LHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQ 524

Query:   579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAM-RIFGVEPDLQH 637
             G    +  LF++ML    KPNE TF +IL AC H+G V EGK YF++M + +   P  +H
Sbjct:   525 GDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKH 584

Query:   638 YACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG 697
             Y CMVD+L+R+G++E A  +I  MP   +   +GA L+GC +H R D+ + + K++    
Sbjct:   585 YTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLH 644

Query:   698 TNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
              +D  YY L+SN+YA +G W++  +VR++M+  GL K+ G+ST+
Sbjct:   645 PDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTM 688

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 213/643 (33%), Positives = 360/643 (55%)

Query:   101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRD 160
             +L  CSSL +L    ++   + K G  ++   QT ++  +  +G +D+A +VF+ + S+ 
Sbjct:    43 LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99

Query:   161 VVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHG 220
              V + +++  +   +D+ + L+ F  M  + VEP       L + CG+   LR  + IHG
Sbjct:   100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query:   221 HVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQK 280
              +++    +D         MY+KC  +  A + F ++ +R   SW  +++ Y+++G  + 
Sbjct:   160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query:   281 ALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALI 340
             ALE    M E   +P+ IT+++VL + + L  +  GK +H   +R G     + +  AL+
Sbjct:   220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN-ISTALV 278

Query:   341 EFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSF 400
             + YA+CG +    ++   + ERN++SWN +I  Y +    KEA+ +  +M   G+ P   
Sbjct:   279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338

Query:   401 SVASSLSACGNVGSLQLGLQIHGHVIKIDC-KDEFVQSSLIDMYSKCGFKNLAYLLFERI 459
             SV  +L AC ++G L+ G  IH   +++   ++  V +SLI MY KC   + A  +F ++
Sbjct:   339 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 398

Query:   460 QQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK 519
             Q +++V WN+MI GF QNG  ++A+N F QM    ++ D  T+++ I A + +      K
Sbjct:   399 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 458

Query:   520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHG 579
             W+H  ++   + K++++ TAL DMYAKCG +  A+ +FD MSER+V +W+AMID YG HG
Sbjct:   459 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHG 518

Query:   580 QLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEG-KFYFNAMRIFGVEPDLQHY 638
                 A  LF++M    IKPN VTF++++ ACSHSG VE G K ++     + +E  + HY
Sbjct:   519 FGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHY 578

Query:   639 ACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT 698
               MVDLL R+G +  A+  I  MP     +++GA+L  C+IHK ++  +   + L     
Sbjct:   579 GAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNP 638

Query:   699 NDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741
             +D GY+ LL+NIY     W++ G+VR  M   GL+K PG S +
Sbjct:   639 DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMV 681

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C507	PP111_ARATH	No assigned EC number	0.5868	0.9986	0.9402	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	741
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-152
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-102
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-98
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-76
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-56
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-46
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-35
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-06
pfam01535	31	pfam01535, PPR, PPR repeat	5e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  464 bits (1195), Expect = e-152
 Identities = 232/670 (34%), Positives = 367/670 (54%), Gaps = 15/670 (2%)

Query: 77  EESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSI 136
           E+++ L   M   +  +    Y ++ R C     +  G +V  R +         +  ++
Sbjct: 68  EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127

Query: 137 LCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDF 196
           L  +  FG L  A  VF KM  RD+ SW+ ++  Y       E L ++H M+  GV PD 
Sbjct: 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187

Query: 197 VTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVK 256
            T   +   CG +  L   R +H HV+R   ++D  + N+ I MY KCGD++SA   F +
Sbjct: 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247

Query: 257 IEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREG 316
           + +R   SW AMIS Y  +G   + LE F  M E+  +P+L+T+ +V+ +C  LG  R G
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307

Query: 317 KSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYAR 376
           + +H  +++ G   +      +LI+ Y   G   E EKV   +  ++ +SW  +IS Y +
Sbjct: 308 REMHGYVVKTGFAVDVSVCN-SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366

Query: 377 KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIH------GHVIKIDC 430
            G+  +ALE    M+   + PD  ++AS LSAC  +G L +G+++H      G +  +  
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV-- 424

Query: 431 KDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQM 490
               V ++LI+MYSKC   + A  +F  I +K V+ W S+I G   N    EA+  F QM
Sbjct: 425 ---VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481

Query: 491 YLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDL 550
            L  L+ + VT + A+ AC+ IG L  GK +H  ++  G+  D ++  AL D+Y +CG +
Sbjct: 482 LLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540

Query: 551 QTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWAC 610
             A   F+S  E++VVSW+ ++  Y  HG+ + A  LF +M++SG+ P+EVTF+++L AC
Sbjct: 541 NYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599

Query: 611 SHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSI 669
           S SG V +G  YF++M   + + P+L+HYAC+VDLL R+G +  A+  I+ MP   + ++
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659

Query: 670 WGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729
           WGALLN CRIH+ +++ +   + +     N  GYY LL N+YA+ G WDE  +VR  M  
Sbjct: 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719

Query: 730 TGLKKVPGYS 739
            GL   PG S
Sbjct: 720 NGLTVDPGCS 729

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  334 bits (857), Expect = e-102
 Identities = 199/653 (30%), Positives = 332/653 (50%), Gaps = 45/653 (6%)

Query: 3   LFRSCTNLRKL---TRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
           LFR C   R +   +R+ +  L +           ++  +   G L  +  VF    E D
Sbjct: 92  LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151

Query: 60  SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHG 119
            F W VL+  Y    +F+E++ LYH+M+        + +P VLR C  + DL  G +VH 
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211

Query: 120 RIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSE 179
            +++ GF+ D  +  +++  Y + G +  AR VFD+M  RD +SW+++I+ YF+N +  E
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271

Query: 180 GLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIV 239
           GL++F +M    V+PD +T+ S+  AC  L   R  R +HG+V++    +D  + NS I 
Sbjct: 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331

Query: 240 MYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLIT 299
           MY   G    AE+ F ++E +   SWTAMIS Y ++G   KALE++  M +    P+ IT
Sbjct: 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

Query: 300 LITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAI 359
           + +VL +CA LG L  G  +H    RKG+   Y  +  ALIE Y++C  + +  +V H I
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNI 450

Query: 360 GERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGL 419
            E++++SW  +I+         EAL    QM    L P+S ++ ++LSAC  +G+L  G 
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509

Query: 420 QIHGHVIKIDCK-DEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNG 478
           +IH HV++     D F+ ++L+D+Y +CG  N A+  F    +K VV WN ++ G+  +G
Sbjct: 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHG 568

Query: 479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKL-ISYGVRKDIYID 537
               A+ LF++M  + +  DEVTF++ + ACS  G + +G    H +   Y +       
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP----- 623

Query: 538 TALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK 597
                                     N+  ++ ++D  G  G+L +A +   +M    I 
Sbjct: 624 --------------------------NLKHYACVVDLLGRAGKLTEAYNFINKM---PIT 654

Query: 598 PNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEP-DLQHYACMVDLLSRSG 649
           P+   +  +L AC     VE G+    A  IF ++P  + +Y  + +L + +G
Sbjct: 655 PDPAVWGALLNACRIHRHVELGE--LAAQHIFELDPNSVGYYILLCNLYADAG 705

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  317 bits (813), Expect = 9e-98
 Identities = 149/441 (33%), Positives = 238/441 (53%), Gaps = 3/441 (0%)

Query: 303 VLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGER 362
           ++ +C  L  +R  K+V+  +   G  P+  Y+   ++  + +CG + +  ++   + ER
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPER 187

Query: 363 NILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIH 422
           N+ SW  +I      G  +EA  L  +M   G   +  +    L A   +GS + G Q+H
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247

Query: 423 GHVIKID-CKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSL 481
             V+K     D FV  +LIDMYSKCG    A  +F+ + +K+ V WNSM+ G+  +G S 
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE 307

Query: 482 EAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALT 541
           EA+ L+++M  + + +D+ TF   I+  S +  LE  K  H  LI  G   DI  +TAL 
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367

Query: 542 DMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV 601
           D+Y+K G ++ A+ VFD M  +N++SW+A+I  YG HG+   A  +F++M+  G+ PN V
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427

Query: 602 TFMNILWACSHSGSVEEGKFYFNAM-RIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS 660
           TF+ +L AC +SG  E+G   F +M     ++P   HYACM++LL R G ++ A+ MI  
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487

Query: 661 MPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF 720
            PF    ++W ALL  CRIHK +++ +   ++L   G      Y +L N+Y   G   E 
Sbjct: 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547

Query: 721 GKVRSIMEVTGLKKVPGYSTI 741
            KV   ++  GL   P  + I
Sbjct: 548 AKVVETLKRKGLSMHPACTWI 568

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  263 bits (673), Expect = 2e-76
 Identities = 140/474 (29%), Positives = 239/474 (50%), Gaps = 13/474 (2%)

Query: 158 SRDVVSWSSIIASYFD----------NADVSEGLKMFHSMVREGVEPDFVTMLSLAEACG 207
           SR +   +S  +S  D          +  + + LK+  SM    V  D    ++L   C 
Sbjct: 38  SRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCE 97

Query: 208 ELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTA 267
              ++     +    L     +   LGN+ + M+ + G+L+ A   F K+ +R   SW  
Sbjct: 98  WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNV 157

Query: 268 MISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKG 327
           ++  Y ++G+F +AL  + +ML     P++ T   VL +C G+  L  G+ VH  ++R G
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217

Query: 328 MGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELL 387
              + D +  ALI  Y +CG +     V   +  R+ +SWN +IS Y   G   E LEL 
Sbjct: 218 FELDVDVVN-ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276

Query: 388 VQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKID-CKDEFVQSSLIDMYSKC 446
             M+   + PD  ++ S +SAC  +G  +LG ++HG+V+K     D  V +SLI MY   
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336

Query: 447 GFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAI 506
           G    A  +F R++ K  V W +MI G+ +NG   +A+  +  M  + +  DE+T  + +
Sbjct: 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396

Query: 507 QACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVV 566
            AC+ +G L+ G  +H      G+   + +  AL +MY+KC  +  A  VF ++ E++V+
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456

Query: 567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGK 620
           SW+++I    ++ +  +A   F+QML + +KPN VT +  L AC+  G++  GK
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  203 bits (519), Expect = 4e-56
 Identities = 122/471 (25%), Positives = 233/471 (49%), Gaps = 48/471 (10%)

Query: 198 TMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKI 257
           T  +L EAC  L S+R  ++++ HV     + D  + N  ++M+ KCG L+ A R F ++
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

Query: 258 EKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGK 317
            +R   SW  +I     +G +++A   F +M E   +    T + +L + AGLG  R G+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244

Query: 318 SVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARK 377
            +HC +++ G+     ++  ALI+ Y++CG + +   V   + E+  ++WN +++ YA  
Sbjct: 245 QLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303

Query: 378 GMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFV-Q 436
           G S+EAL L  +M+  G+  D F+ +  +     +  L+   Q H  +I+     + V  
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363

Query: 437 SSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLE 496
           ++L+D+YSK G    A  +F+R+ +K+++ WN++I G+  +G   +A+ +F +M    + 
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423

Query: 497 MDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRV 556
            + VTFL  + AC   G  E+G                                     +
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGW-----------------------------------EI 448

Query: 557 FDSMSERN-----VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACS 611
           F SMSE +      + ++ MI+  G  G L++A ++ +    +  KP    +  +L AC 
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR---RAPFKPTVNMWAALLTACR 505

Query: 612 HSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM 661
              ++E G+    A +++G+ P+ L +Y  +++L + SG    A K++ ++
Sbjct: 506 IHKNLELGR--LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  174 bits (443), Expect = 5e-46
 Identities = 91/328 (27%), Positives = 163/328 (49%), Gaps = 9/328 (2%)

Query: 98  YPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT 157
           Y +++ AC +L  +   + V+  +   GF+ D  +   +L  + + G L DAR++FD+M 
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185

Query: 158 SRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPD---FVTMLSLAEACGELCSLRP 214
            R++ SW +II    D  +  E   +F  M  +G + +   FV ML  +   G   S R 
Sbjct: 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG---SARA 242

Query: 215 ARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNR 274
            + +H  VL+  +  D  +  + I MYSKCGD+  A   F  + ++ T +W +M++ Y  
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302

Query: 275 SGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDY 334
            G+ ++AL  + +M +     +  T   ++   + L  L   K  H  +IR G     D 
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF--PLDI 360

Query: 335 LG-PALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTW 393
           +   AL++ Y++ G+M +   V   +  +N++SWN LI+ Y   G   +A+E+  +M   
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420

Query: 394 GLMPDSFSVASSLSACGNVGSLQLGLQI 421
           G+ P+  +  + LSAC   G  + G +I
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEI 448

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  141 bits (358), Expect = 4e-35
 Identities = 82/321 (25%), Positives = 153/321 (47%), Gaps = 5/321 (1%)

Query: 3   LFRSCTNLRKL---TRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPD 59
           L  +C  L+ +     ++ H+  +G   D     R++  + + G L  +R +FD   E +
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN 188

Query: 60  SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHG 119
              W  +I   +    + E+  L+ +M  + +      +  +LRA + LG   +G+++H 
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248

Query: 120 RIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSE 179
            ++K G   D  +  +++  Y + G ++DAR VFD M  +  V+W+S++A Y  +    E
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308

Query: 180 GLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIV 239
            L +++ M   GV  D  T   +      L  L  A+  H  ++R    +D  + N+ +V
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD-IVANTALV 367

Query: 240 -MYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298
            +YSK G +  A   F ++ ++   SW A+I+ Y   G   KA+E F +M+     PN +
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427

Query: 299 TLITVLGSCAGLGWLREGKSV 319
           T + VL +C   G   +G  +
Sbjct: 428 TFLAVLSACRYSGLSEQGWEI 448

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 76.5 bits (188), Expect = 3e-14
 Identities = 69/309 (22%), Positives = 144/309 (46%), Gaps = 15/309 (4%)

Query: 366 SWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQI-HGH 424
           ++NML+S  A       AL +L  +Q  GL  D     + +S C   G +    ++ H  
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498

Query: 425 VIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV----VMWNSMI--CGFYQNG 478
           V      +     +LID  ++ G    A+  +  ++ K+V    V++N++I  CG  Q+G
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG--QSG 556

Query: 479 NSLEAINLFHQMYLNC--LEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYI 536
               A ++  +M      ++ D +T    ++AC+N GQ+++ K V+  +  Y ++    +
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616

Query: 537 DTALTDMYAKCGDLQTAQRVFDSMSERNV----VSWSAMIDCYGMHGQLNDAASLFKQML 592
            T   +  ++ GD   A  ++D M ++ V    V +SA++D  G  G L+ A  + +   
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676

Query: 593 DSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIE 652
             GIK   V++ +++ ACS++ + ++    +  ++   + P +     ++  L     + 
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736

Query: 653 GAFKMIHSM 661
            A +++  M
Sbjct: 737 KALEVLSEM 745

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 564 NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNIL 607
           +VV+++ +ID Y   G++ +A  LF +M   GIKPN  T+ +IL
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY-SIL 44

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.0 bits (113), Expect = 3e-07
 Identities = 13/39 (33%), Positives = 27/39 (69%)

Query: 363 NILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFS 401
           +++++N LI  Y +KG  +EAL+L  +M+  G+ P+ ++
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 73/391 (18%), Positives = 153/391 (39%), Gaps = 72/391 (18%)

Query: 265 WTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQII 324
           +T +IS   +SG      E F +M+    E N+ T   ++  CA  G + +    +  + 
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534

Query: 325 RKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEAL 384
            K + P+                      +V+          +N LIS   + G    A 
Sbjct: 535 SKNVKPD----------------------RVV----------FNALISACGQSGAVDRAF 562

Query: 385 ELLVQM--QTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLID 441
           ++L +M  +T  + PD  +V + + AC N G +    +++  + + + K    V +  ++
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622

Query: 442 MYSKCGFKNLAYLLFERIQQKSV----VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEM 497
             S+ G  + A  +++ +++K V    V +++++      G+  +A  +        +++
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682

Query: 498 DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKC-GDLQTAQRV 556
             V++ + + ACSN    +K   ++  + S  +R  +    AL  + A C G+       
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL--ITALCEGN------- 733

Query: 557 FDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSV 616
                                  QL  A  +  +M   G+ PN +T+  +L A       
Sbjct: 734 -----------------------QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

Query: 617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSR 647
           + G    +  +  G++P+L    C+  L  R
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.6 bits (112), Expect = 5e-07
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 160 DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVT 198
           DVV+++++I  Y     V E LK+F+ M + G++P+  T
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 52.2 bits (125), Expect = 1e-06
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 52/291 (17%)

Query: 147 DDARKVFDKMTSR----DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSL 202
           D A +V   +       D   ++++I++   +  V    ++FH MV  GVE +  T  +L
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513

Query: 203 AEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTF-VKIEKRC 261
            + C     +  A   +G +  + +K D  + N+ I   S CG   + +R F V  E + 
Sbjct: 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI---SACGQSGAVDRAFDVLAEMKA 570

Query: 262 TT--------SWTAMISCYNRSGWFQKALESFVKMLE--VKEEPNLITLITVLGSCAGLG 311
            T        +  A++     +G   +A E +  + E  +K  P + T+   + SC+  G
Sbjct: 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI--AVNSCSQKG 628

Query: 312 WLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLI 371
                 S++  + +KG+ P+  +   AL++               HA             
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFS-ALVDVAG------------HA------------- 662

Query: 372 SEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIH 422
                 G   +A E+L   +  G+   + S +S + AC N  + +  L+++
Sbjct: 663 ------GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE 600
           V+++ +ID     G++ +A  LFK+M + GI+P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 462 KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSN 511
             VV +N++I G+ + G   EA+ LF++M    ++ +  T+   I     
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGI 596
           V+++++I  Y   G+L +A  LFK+M + G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPD 195
           V+++++I        V E L++F  M   G+EPD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 366 SWNMLISEYARKGMSKEALELLVQMQTWGL 395
           ++N LIS Y + G  +EALEL  +M+  G+
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 465 VMWNSMICGFYQNGNSLEAINLFHQM 490
           V +NS+I G+ + G   EA+ LF +M
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 8/34 (23%), Positives = 20/34 (58%)

Query: 565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP 598
           + +++A++      G  + A ++ ++M  SG+KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	741
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.92
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
KOG2076	895	consensus RNA polymerase III transcription factor	99.85
KOG2076	895	consensus RNA polymerase III transcription factor	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.84
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.84
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.81
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.78
KOG2003	840	consensus TPR repeat-containing protein [General f	99.78
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.77
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.71
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.71
KOG2003	840	consensus TPR repeat-containing protein [General f	99.7
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.67
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.62
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.58
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.58
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.56
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.55
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.53
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.53
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.52
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.52
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.52
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.49
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.49
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.43
KOG1129	478	consensus TPR repeat-containing protein [General f	99.42
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.42
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.41
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.4
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.35
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.35
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.34
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.34
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.34
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.34
PRK12370	553	invasion protein regulator; Provisional	99.33
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.31
KOG1129	478	consensus TPR repeat-containing protein [General f	99.31
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.29
PRK12370	553	invasion protein regulator; Provisional	99.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.26
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.23
PRK11189	296	lipoprotein NlpI; Provisional	99.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
PF13041	50	PPR_2: PPR repeat family	99.2
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.17
PF13041	50	PPR_2: PPR repeat family	99.16
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.15
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.11
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.1
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.08
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	99.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.02
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.01
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.0
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.99
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.93
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.87
PRK15359	144	type III secretion system chaperone protein SscB;	98.86
KOG1125	579	consensus TPR repeat-containing protein [General f	98.83
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.79
PRK04841	903	transcriptional regulator MalT; Provisional	98.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.77
PLN02789	320	farnesyltranstransferase	98.75
PRK04841	903	transcriptional regulator MalT; Provisional	98.74
PRK15359	144	type III secretion system chaperone protein SscB;	98.74
PF12854	34	PPR_1: PPR repeat	98.72
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.71
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.68
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.63
PLN02789	320	farnesyltranstransferase	98.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.57
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.57
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.54
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.52
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.52
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.5
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.5
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.44
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.44
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.44
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.42
PF12854	34	PPR_1: PPR repeat	98.42
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.33
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.33
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.28
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.23
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.22
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.15
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.13
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.13
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.09
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.04
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.01
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.0
KOG0553	304	consensus TPR repeat-containing protein [General f	97.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.97
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.97
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.95
KOG0553	304	consensus TPR repeat-containing protein [General f	97.94
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.9
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.88
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.86
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.85
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.83
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.81
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.8
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.76
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.75
PF13371	73	TPR_9: Tetratricopeptide repeat	97.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.74
PRK15331	165	chaperone protein SicA; Provisional	97.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.71
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.63
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.59
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.59
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.59
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.55
PRK10803	263	tol-pal system protein YbgF; Provisional	97.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.52
PF13431	34	TPR_17: Tetratricopeptide repeat	97.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.51
PF12688	120	TPR_5: Tetratrico peptide repeat	97.51
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.5
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.48
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.41
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.39
PRK10803	263	tol-pal system protein YbgF; Provisional	97.34
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.33
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.32
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.31
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.31
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.3
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.28
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.28
PF13371	73	TPR_9: Tetratricopeptide repeat	97.27
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.27
PF13428	44	TPR_14: Tetratricopeptide repeat	97.24
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.24
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.23
PF12688	120	TPR_5: Tetratrico peptide repeat	97.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.21
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.17
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.14
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.14
PF13512	142	TPR_18: Tetratricopeptide repeat	97.08
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.02
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.02
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.0
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.98
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.96
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.88
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.85
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.81
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.8
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.76
PRK11906	458	transcriptional regulator; Provisional	96.75
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.68
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.65
PRK11906	458	transcriptional regulator; Provisional	96.59
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.57
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.54
KOG4555	175	consensus TPR repeat-containing protein [Function	96.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.5
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.49
PRK15331	165	chaperone protein SicA; Provisional	96.45
KOG1585	308	consensus Protein required for fusion of vesicles	96.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.39
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.24
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.18
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.18
KOG1258	577	consensus mRNA processing protein [RNA processing	96.17
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.15
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.13
KOG4234	271	consensus TPR repeat-containing protein [General f	95.94
KOG1586	288	consensus Protein required for fusion of vesicles	95.72
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.69
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.63
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.62
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.59
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.48
KOG4555	175	consensus TPR repeat-containing protein [Function	95.43
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.37
PF13512	142	TPR_18: Tetratricopeptide repeat	95.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.36
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.31
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.17
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.16
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.15
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.15
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.12
KOG1258	577	consensus mRNA processing protein [RNA processing	95.11
KOG1585	308	consensus Protein required for fusion of vesicles	95.04
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.81
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.75
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.72
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.69
KOG3941	406	consensus Intermediate in Toll signal transduction	94.52
PRK11619	644	lytic murein transglycosylase; Provisional	94.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.46
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.18
KOG4234	271	consensus TPR repeat-containing protein [General f	94.07
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.96
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.54
KOG3941	406	consensus Intermediate in Toll signal transduction	93.51
PF13428	44	TPR_14: Tetratricopeptide repeat	93.46
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.36
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.09
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.01
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.96
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.95
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.92
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.86
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.68
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.57
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.52
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.49
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.45
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.37
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.36
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.3
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.14
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	91.93
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.93
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.88
PRK09687	280	putative lyase; Provisional	91.7
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.66
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	91.45
PRK09687	280	putative lyase; Provisional	91.15
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.8
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.74
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.53
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	90.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.5
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.42
PF13431	34	TPR_17: Tetratricopeptide repeat	90.3
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.35
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	89.2
KOG4648	536	consensus Uncharacterized conserved protein, conta	88.85
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.82
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.8
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.8
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.77
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	88.44
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.21
PRK12798	421	chemotaxis protein; Reviewed	88.18
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.98
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.83
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	87.74
PRK11619	644	lytic murein transglycosylase; Provisional	87.69
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	87.49
KOG1550	552	consensus Extracellular protein SEL-1 and related	87.17
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	87.13
PRK10941	269	hypothetical protein; Provisional	86.99
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	86.78
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.67
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.19
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.14
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.06
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.03
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	85.95
COG3947	361	Response regulator containing CheY-like receiver a	85.94
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	85.84
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	85.73
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	85.65
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.11
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.65
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	84.64
KOG3364	149	consensus Membrane protein involved in organellar	84.48
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	84.44
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.29
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.18
KOG4570	418	consensus Uncharacterized conserved protein [Funct	83.85
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	83.22
COG1747	711	Uncharacterized N-terminal domain of the transcrip	82.71
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.49
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	82.29
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	82.25
COG1747	711	Uncharacterized N-terminal domain of the transcrip	82.25
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.9
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	81.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	81.68
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.25
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	80.45

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.1e-95  Score=810.95  Aligned_cols=682  Identities=34%  Similarity=0.632  Sum_probs=671.3

Q ss_pred             CCCccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHH
Q 004632           57 EPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSI  136 (741)
Q Consensus        57 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  136 (741)
                      .|+..++|.++.+|++.|++++|..+|+.|.+.|+.|+..+|..++.+|.+.+.++.+.+++..+.+.+..++..+++.+
T Consensus        48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l  127 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM  127 (857)
T ss_pred             ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHH
Q 004632          137 LCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPAR  216 (741)
Q Consensus       137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  216 (741)
                      +..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus       128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~  207 (857)
T PLN03077        128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR  207 (857)
T ss_pred             HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004632          217 SIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN  296 (741)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  296 (741)
                      +++..+.+.|+.||..+++.++.+|++.|++++|.++|++|+.+|+.+||.+|.+|++.|++++|+++|++|...|+.||
T Consensus       208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd  287 (857)
T PLN03077        208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD  287 (857)
T ss_pred             HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 004632          297 LITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYAR  376 (741)
Q Consensus       297 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~  376 (741)
                      ..||+.++.+|++.|+.+.+.+++..+.+.|+. ++..+++.|+.+|++.|++++|.++|+++..||..+||.+|.+|++
T Consensus       288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~  366 (857)
T PLN03077        288 LMTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK  366 (857)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence            999999999999999999999999999999998 6889999999999999999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHH
Q 004632          377 KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLL  455 (741)
Q Consensus       377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~  455 (741)
                      .|++++|+++|++|.+.|+.||..||..++.+|++.|+++.+.++++.+.+.|..++. +++.++.+|+++|++++|.++
T Consensus       367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v  446 (857)
T PLN03077        367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV  446 (857)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888 999999999999999999999


Q ss_pred             HHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCch
Q 004632          456 FERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIY  535 (741)
Q Consensus       456 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  535 (741)
                      |++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..
T Consensus       447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~  525 (857)
T PLN03077        447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF  525 (857)
T ss_pred             HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence            9999999999999999999999999999999999986 599999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 004632          536 IDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGS  615 (741)
Q Consensus       536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  615 (741)
                      ++++++++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus       526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~  604 (857)
T PLN03077        526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM  604 (857)
T ss_pred             echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632          616 VEEGKFYFNAMR-IFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELS  694 (741)
Q Consensus       616 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  694 (741)
                      +++|.++|+.|. +.|+.|+..+|+.++++|.+.|++++|.+++++|+..|+..+|.+|+.+|..+|+.+.++...+++.
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~  684 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF  684 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999999999 5899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCCCcCC
Q 004632          695 VTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI  741 (741)
Q Consensus       695 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  741 (741)
                      ++.|+++..|..|+++|...|+|++|.++++.|+++|++|+||+|||
T Consensus       685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i  731 (857)
T PLN03077        685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV  731 (857)
T ss_pred             hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence            99999999999999999999999999999999999999999999997

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1e-85  Score=733.27  Aligned_cols=629  Identities=30%  Similarity=0.559  Sum_probs=610.4

Q ss_pred             ccccc---cchHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHH
Q 004632            3 LFRSC---TNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEES   79 (741)
Q Consensus         3 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a   79 (741)
                      |++.|   +.++.+.++|..+++.|..|++.++|+|+..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|
T Consensus        92 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A  171 (857)
T PLN03077         92 LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA  171 (857)
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHH
Confidence            56677   678888999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCC
Q 004632           80 ILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSR  159 (741)
Q Consensus        80 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  159 (741)
                      +.+|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|++|
T Consensus       172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~  251 (857)
T PLN03077        172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR  251 (857)
T ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHH
Q 004632          160 DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIV  239 (741)
Q Consensus       160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  239 (741)
                      |..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.++.
T Consensus       252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~  331 (857)
T PLN03077        252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ  331 (857)
T ss_pred             CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHH
Q 004632          240 MYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSV  319 (741)
Q Consensus       240 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  319 (741)
                      +|++.|++++|.++|++|..+|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus       332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l  411 (857)
T PLN03077        332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL  411 (857)
T ss_pred             HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH
Q 004632          320 HCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS  399 (741)
Q Consensus       320 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  399 (741)
                      ++.+.+.|+. ++..+++.|+.+|.+.|++++|.++|+++.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||.
T Consensus       412 ~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~  489 (857)
T PLN03077        412 HELAERKGLI-SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS  489 (857)
T ss_pred             HHHHHHhCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence            9999999998 78899999999999999999999999999999999999999999999999999999999986 599999


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcC
Q 004632          400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNG  478 (741)
Q Consensus       400 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g  478 (741)
                      .||..++.+|++.|.++.+.+++..+.+.+...+. +++.++.+|+++|++++|..+|+.+ .+|..+||++|.+|++.|
T Consensus       490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G  568 (857)
T PLN03077        490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHG  568 (857)
T ss_pred             hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcC
Confidence            99999999999999999999999999999998888 9999999999999999999999999 899999999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHH-HcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 004632          479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLI-SYGVRKDIYIDTALTDMYAKCGDLQTAQRVF  557 (741)
Q Consensus       479 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  557 (741)
                      +.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++
T Consensus       569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~  648 (857)
T PLN03077        569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI  648 (857)
T ss_pred             CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 7899999999999999999999999999999


Q ss_pred             HhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc
Q 004632          558 DSMS-ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDL  635 (741)
Q Consensus       558 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  635 (741)
                      ++|. +||..+|++|+.+|...|+.+.+....+++.+  +.|+.. .|..+.+.|...|+|++|.++.+.|++.|+.+++
T Consensus       649 ~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~  726 (857)
T PLN03077        649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP  726 (857)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence            9996 79999999999999999999999999999998  778655 6666777999999999999999999999988775


Q ss_pred             c
Q 004632          636 Q  636 (741)
Q Consensus       636 ~  636 (741)
                      .
T Consensus       727 g  727 (857)
T PLN03077        727 G  727 (857)
T ss_pred             C
Confidence            4

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.1e-67  Score=569.84  Aligned_cols=481  Identities=32%  Similarity=0.530  Sum_probs=470.6

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHH
Q 004632          260 RCTTSWTAMISCYNRSGWFQKALESFVKMLEVK-EEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPA  338 (741)
Q Consensus       260 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~  338 (741)
                      .+..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|.+.++.+.+.+++..+.+.|+. ++..+++.
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~  163 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMNR  163 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHHH
Confidence            466689999999999999999999999999864 7899999999999999999999999999999999998 47899999


Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHH
Q 004632          339 LIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLG  418 (741)
Q Consensus       339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  418 (741)
                      ++.+|.+.|+++.|.++|+++.+||..+||.++.+|++.|++++|+++|++|.+.|+.||..||..++.+|...|..+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004632          419 LQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEM  497 (741)
Q Consensus       419 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  497 (741)
                      .+++..+.+.+..++. +++.++.+|+++|++++|.++|++|..+|..+||.++.+|++.|++++|+++|++|.+.|+.|
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999988887 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 004632          498 DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGM  577 (741)
Q Consensus       498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~  577 (741)
                      |..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++++|++.|++++|.++|++|.+||..+|++||.+|++
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~  403 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN  403 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChHHHHH
Q 004632          578 HGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFK  656 (741)
Q Consensus       578 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~  656 (741)
                      .|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999987 7999999999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCC
Q 004632          657 MIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVP  736 (741)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  736 (741)
                      ++++++..|+..+|+.++.+|..+|+++.|..+++++.+..|++...|..|+++|.+.|++++|.+++++|+++|+++.|
T Consensus       484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~  563 (697)
T PLN03081        484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP  563 (697)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCC
Q 004632          737 GYSTI  741 (741)
Q Consensus       737 ~~~~~  741 (741)
                      |+|||
T Consensus       564 g~s~i  568 (697)
T PLN03081        564 ACTWI  568 (697)
T ss_pred             CeeEE
Confidence            99996

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.9e-65  Score=553.91  Aligned_cols=536  Identities=14%  Similarity=0.181  Sum_probs=482.1

Q ss_pred             CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCC-CCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHH
Q 004632           91 ATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGF-DKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIA  169 (741)
Q Consensus        91 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~  169 (741)
                      ..++...|..++..+++.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..|+..+|+.++.
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~  445 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS  445 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            346677899999999999999999999999999996 5677788899999999999999999999999999999999999


Q ss_pred             HHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHH
Q 004632          170 SYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLS  249 (741)
Q Consensus       170 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  249 (741)
                      +|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHhhccCChhhHHHHHHHH
Q 004632          250 AERTFVKIEK----RCTTSWTAMISCYNRSGWFQKALESFVKMLE--VKEEPNLITLITVLGSCAGLGWLREGKSVHCQI  323 (741)
Q Consensus       250 A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  323 (741)
                      |.++|++|..    ||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..||+.+|.+|++.|++++|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999854    7888999999999999999999999999976  578999999999999999999999999999999


Q ss_pred             HHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 004632          324 IRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVA  403 (741)
Q Consensus       324 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  403 (741)
                      .+.|+.|                                +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus       606 ~e~gi~p--------------------------------~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn  653 (1060)
T PLN03218        606 HEYNIKG--------------------------------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS  653 (1060)
T ss_pred             HHcCCCC--------------------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            9998876                                78889999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcC
Q 004632          404 SSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQ----QKSVVMWNSMICGFYQNG  478 (741)
Q Consensus       404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g  478 (741)
                      .++.+|++.|++++|.++++.+.+.+..++. +|+.++.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|
T Consensus       654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G  733 (1060)
T PLN03218        654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN  733 (1060)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999988777 99999999999999999999999985    579999999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 004632          479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFD  558 (741)
Q Consensus       479 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  558 (741)
                      ++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.++.  +++++|..+.+
T Consensus       734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~  811 (1060)
T PLN03218        734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGE  811 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999987654  24555555544


Q ss_pred             hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH
Q 004632          559 SMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY  638 (741)
Q Consensus       559 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  638 (741)
                      .+..     |+. .......+..+.|..+|++|.+.|+.||..||+.++.+++..+....+..+++.|...+..|+..+|
T Consensus       812 ~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y  885 (1060)
T PLN03218        812 PVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL  885 (1060)
T ss_pred             hhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence            3321     110 1111122345679999999999999999999999998888999999999999998888888899999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 004632          639 ACMVDLLSRSGDIEGAFKMIHSM---PFPANGS  668 (741)
Q Consensus       639 ~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~  668 (741)
                      +.+++++.+  ..++|..++++|   +..|+..
T Consensus       886 ~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        886 STLVDGFGE--YDPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence            999998843  246899999999   5555543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.7e-65  Score=553.27  Aligned_cols=530  Identities=15%  Similarity=0.183  Sum_probs=422.7

Q ss_pred             CCChhhhHHHHHHHHccCChhhHHHhhccCCCCCc-----cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 004632           26 HYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS-----FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPS  100 (741)
Q Consensus        26 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  100 (741)
                      .++...|..++..|++.|++++|+++|+.|+.++.     .+++.++.+|.+.|..++|+.+|+.|..    |+..+|+.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~  442 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM  442 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence            46777888888888888999999999988876443     4556677778888888888888888863    88888999


Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCC----CCCceeHHHHHHHHHhCCC
Q 004632          101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT----SRDVVSWSSIIASYFDNAD  176 (741)
Q Consensus       101 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~  176 (741)
                      ++.+|++.|+++.|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.    .||..+|+.||.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            999999999999999999999888888898899999999999999999999988887    4788889999999999999


Q ss_pred             hhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 004632          177 VSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLR--RKIKIDGPLGNSFIVMYSKCGDLLSAERTF  254 (741)
Q Consensus       177 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  254 (741)
                      +++|+++|+.|...|+.||..||+.+|.+|++.|++++|.++++.|.+  .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999998888889999999999999999999999999988876  578888889999999999999999999999


Q ss_pred             hccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCC
Q 004632          255 VKIEK----RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGP  330 (741)
Q Consensus       255 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  330 (741)
                      +.|.+    ++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+. 
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-  681 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-  681 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence            88875    4557899999999999999999999999999899999999999999999999999999999999988887 


Q ss_pred             CcchHHHHHHHHHHhcCChHHHHHHHHhcC----CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004632          331 EYDYLGPALIEFYAECGKMSECEKVIHAIG----ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSL  406 (741)
Q Consensus       331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  406 (741)
                      ++..+++.++.+|++.|++++|.++|++|.    .||..+||.+|.+|++.|++++|+++|++|...|+.||..||..++
T Consensus       682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            677788888888888888888888888874    5899999999999999999999999999999999999999999999


Q ss_pred             HHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHH
Q 004632          407 SACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAIN  485 (741)
Q Consensus       407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  485 (741)
                      .+|++.|+++.|.+++..+.+.+..++. +++.++.+|.+  .++++..+.+.+..     |+. .......+..+.|+.
T Consensus       762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~  833 (1060)
T PLN03218        762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWALM  833 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHHHH
Confidence            9999999999999999999999988777 77777755432  34444433322211     100 000111122344666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH
Q 004632          486 LFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNV  565 (741)
Q Consensus       486 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  565 (741)
                      +|++|.+.|+.||..||+.++.+++..+....+..+++.|...+..                               |+.
T Consensus       834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~-------------------------------~~~  882 (1060)
T PLN03218        834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS-------------------------------QKQ  882 (1060)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC-------------------------------cch
Confidence            6666666666666666666665444444444444444433333333                               455


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004632          566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV  601 (741)
Q Consensus       566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  601 (741)
                      .+|++++.++.+  ..++|..++++|.+.|+.|+..
T Consensus       883 ~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        883 SNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             hhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence            666777776632  2468999999999999999875

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.7e-63  Score=538.89  Aligned_cols=473  Identities=24%  Similarity=0.420  Sum_probs=458.2

Q ss_pred             CCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHH
Q 004632          158 SRDVVSWSSIIASYFDNADVSEGLKMFHSMVREG-VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNS  236 (741)
Q Consensus       158 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  236 (741)
                      .++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+++.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            3577799999999999999999999999998764 789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhH
Q 004632          237 FIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREG  316 (741)
Q Consensus       237 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  316 (741)
                      ++.+|++.|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|..+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 004632          317 KSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLM  396 (741)
Q Consensus       317 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  396 (741)
                      .+++..+.+.|+. ++..+++.|+.+|++.|++++|.++|+.+.++|+.+||.++.+|++.|++++|+++|++|.+.|+.
T Consensus       244 ~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        244 QQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            9999999999998 688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHH
Q 004632          397 PDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFY  475 (741)
Q Consensus       397 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~  475 (741)
                      ||..||+.++.+|++.|+++.|.+++..+.+.+..++. +++.++.+|+++|++++|.++|++|.++|..+||++|.+|+
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999988777 99999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHH-cCCCCCchhHHHHHHHHHhcCCHHHHH
Q 004632          476 QNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLIS-YGVRKDIYIDTALTDMYAKCGDLQTAQ  554 (741)
Q Consensus       476 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~  554 (741)
                      +.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999975 799999999999999999999999999


Q ss_pred             HHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 004632          555 RVFDSMS-ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVE  632 (741)
Q Consensus       555 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  632 (741)
                      ++++++. .|+..+|++++.+|+..|+++.|..+++++.+  +.|+ ..+|..++..|++.|++++|.++++.|.+.|+.
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            9999997 69999999999999999999999999999986  6775 569999999999999999999999999998875


Q ss_pred             C
Q 004632          633 P  633 (741)
Q Consensus       633 ~  633 (741)
                      .
T Consensus       561 k  561 (697)
T PLN03081        561 M  561 (697)
T ss_pred             c
Confidence            4

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.4e-42  Score=396.43  Aligned_cols=707  Identities=12%  Similarity=0.029  Sum_probs=377.4

Q ss_pred             cchHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHH
Q 004632            8 TNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYH   84 (741)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~   84 (741)
                      +.+..+...+.++++.. +.++..+..+...+...|++++|..+++++..  | +...|..+...+...|++++|...|+
T Consensus       139 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  217 (899)
T TIGR02917       139 GQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR  217 (899)
T ss_pred             CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            77888888888887654 23566777888888888888888888887643  3 45667777778888888888888888


Q ss_pred             HHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC--CC-c
Q 004632           85 KMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS--RD-V  161 (741)
Q Consensus        85 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~  161 (741)
                      +..+.. +.+..++..+...+...|++++|...++.+.+.... +..........+...|++++|...|++..+  |+ .
T Consensus       218 ~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~  295 (899)
T TIGR02917       218 KAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL  295 (899)
T ss_pred             HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch
Confidence            887654 345556777777778888888888888887776532 233333333444566777777777666543  21 1


Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 004632          162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMY  241 (741)
Q Consensus       162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  241 (741)
                      ..+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...+..+.+... .+...+..+...+
T Consensus       296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~  373 (899)
T TIGR02917       296 PALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAY  373 (899)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            122333344555666666666666555432 22333444455555555666666655555554432 2344455555555


Q ss_pred             HhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------------------
Q 004632          242 SKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVK--------------------------  292 (741)
Q Consensus       242 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------------------------  292 (741)
                      .+.|++++|.+.|+++..   .+...+..+...+...|++++|++.++.+.+..                          
T Consensus       374 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  453 (899)
T TIGR02917       374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA  453 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence            555666666655555433   122344444445555555555555555544432                          


Q ss_pred             -------CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---C
Q 004632          293 -------EEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---R  362 (741)
Q Consensus       293 -------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~  362 (741)
                             .+++..++..+...+...|++++|...++++.+..  |.+...+..++..+...|++++|.+.++++..   .
T Consensus       454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  531 (899)
T TIGR02917       454 AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK  531 (899)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence                   12233444444444445555555555555444432  34444444445555555555555555544421   2


Q ss_pred             CcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004632          363 NILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDM  442 (741)
Q Consensus       363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  442 (741)
                      +..++..+...+.+.|++++|...++++...+ +.+...+..+...+...|++++|..+++.+.+..+.+...+..++.+
T Consensus       532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  610 (899)
T TIGR02917       532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA  610 (899)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            33344444445555555555555555544431 22333344444445555555555555555554444444455555555


Q ss_pred             HHhcCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632          443 YSKCGFKNLAYLLFERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK  519 (741)
Q Consensus       443 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  519 (741)
                      +...|++++|...|+.+.+   .++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus       611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  689 (899)
T TIGR02917       611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK  689 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555544432   133344445555555555555555555554431 223444445555555555555555


Q ss_pred             HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004632          520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK  597 (741)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  597 (741)
                      .+++.+.+.. +.+...+..+...+...|++++|...|+.+.+  |+..++..++.++...|++++|.+.++++.+.  .
T Consensus       690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~  766 (899)
T TIGR02917       690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--H  766 (899)
T ss_pred             HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence            5555554443 22334444455555555555555555555442  33344444555555555555555555555542  2


Q ss_pred             C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 004632          598 P-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALL  674 (741)
Q Consensus       598 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~  674 (741)
                      | +...+..+...|...|++++|.+.|+++.+.. +.+...+..++..+...|+ .+|+.+++++  ..+.++..+..++
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~  844 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG  844 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            2 23344444455555555555555555555432 2334455555555555555 4455555554  1223344444555


Q ss_pred             HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      ..+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|+
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            555555555555555555555555555555555555555555555555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=8e-42  Score=393.32  Aligned_cols=713  Identities=13%  Similarity=0.075  Sum_probs=504.6

Q ss_pred             cchHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHH
Q 004632            8 TNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYH   84 (741)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~   84 (741)
                      +.+..+...+.+.....-..+...+..+...+.+.|++++|...|+++.+  | +...|..+...+...|++++|..+++
T Consensus       104 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  183 (899)
T TIGR02917       104 GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALID  183 (899)
T ss_pred             CCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence            78888888887665444445677889999999999999999999998754  4 45678889999999999999999999


Q ss_pred             HHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC--C-Cc
Q 004632           85 KMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS--R-DV  161 (741)
Q Consensus        85 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~  161 (741)
                      ++.+.. +++...+..+...+...|+++.|...++...+.. +.+..++..+...+...|++++|...++.+.+  | +.
T Consensus       184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~  261 (899)
T TIGR02917       184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSP  261 (899)
T ss_pred             HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            998764 4566678888899999999999999999998876 45677888889999999999999999998864  2 22


Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 004632          162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMY  241 (741)
Q Consensus       162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  241 (741)
                      ..+......+...|++++|...|+.+.+.+.. +...+..+...+...|+++.|...++.+.+..+ .+...+..+...+
T Consensus       262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~  339 (899)
T TIGR02917       262 LAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQ  339 (899)
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence            23333444567799999999999999876422 223344555667789999999999999988754 3566777888999


Q ss_pred             HhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632          242 SKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS  318 (741)
Q Consensus       242 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  318 (741)
                      .+.|++++|...++.+..   .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.|..
T Consensus       340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  418 (899)
T TIGR02917       340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIA  418 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHH
Confidence            999999999999998765   345578889999999999999999999998753 2244566666777777888888888


Q ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCC-
Q 004632          319 VHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWG-  394 (741)
Q Consensus       319 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-  394 (741)
                      .++.+.+..  |........++..+.+.|++++|..+++.+..   .+...|..+...+...|++++|.+.|+++.+.. 
T Consensus       419 ~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  496 (899)
T TIGR02917       419 DLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP  496 (899)
T ss_pred             HHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence            877776654  34444444555555555555555555555432   233445555555555555555555555554421 


Q ss_pred             --------------------------------CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004632          395 --------------------------------LMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDM  442 (741)
Q Consensus       395 --------------------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  442 (741)
                                                      .+.+..++..+...+...|+.++|...+..+.+.++.....+..++..
T Consensus       497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  576 (899)
T TIGR02917       497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY  576 (899)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence                                            112233333344444444444444444444444444433344445555


Q ss_pred             HHhcCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632          443 YSKCGFKNLAYLLFERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK  519 (741)
Q Consensus       443 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  519 (741)
                      |...|++++|...++.+..   .++..|..+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|.
T Consensus       577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  655 (899)
T TIGR02917       577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI  655 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555554432   233455555666666666666666666655432 233445555555566666666666


Q ss_pred             HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004632          520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGI  596 (741)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  596 (741)
                      ..++.+.+.. +.+...+..++..+...|++++|..+++.+.+   ++...+..+...+...|++++|.+.|+++.+  .
T Consensus       656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~  732 (899)
T TIGR02917       656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--R  732 (899)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence            6666665543 22345555666666666666666666666552   3455666677777778888888888888777  4


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 004632          597 KPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALL  674 (741)
Q Consensus       597 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~  674 (741)
                      .|+..++..+..++...|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.|+++  ..|++..++..++
T Consensus       733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  811 (899)
T TIGR02917       733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA  811 (899)
T ss_pred             CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5665667777778888888888888888887743 346777888888888889999999888887  4566778888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632          675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK  733 (741)
Q Consensus       675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  733 (741)
                      ..+...|+ ++|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+..
T Consensus       812 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  869 (899)
T TIGR02917       812 WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE  869 (899)
T ss_pred             HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            88888888 77999999999999999988999999999999999999999998886643

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.2e-28  Score=281.91  Aligned_cols=643  Identities=9%  Similarity=-0.009  Sum_probs=442.6

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhh---------
Q 004632           63 WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQ---------  133 (741)
Q Consensus        63 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------  133 (741)
                      .-..++.+...++.+.|...++++.... +-++..+..++..+...|+.++|.+.++.+.+... .+....         
T Consensus        31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~  108 (1157)
T PRK11447         31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLS  108 (1157)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhc
Confidence            4455567788889999999999887653 33556778888888899999999999999988763 222221         


Q ss_pred             -------hHHHHHhHhcCChhHHHHHHccCCCCCceeHH----HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHH
Q 004632          134 -------TSILCTYGEFGCLDDARKVFDKMTSRDVVSWS----SIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSL  202 (741)
Q Consensus       134 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  202 (741)
                             ..+...+.+.|++++|.+.|++..+.++....    .+.......|+.++|++.|+++.... +-+...+..+
T Consensus       109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L  187 (1157)
T PRK11447        109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL  187 (1157)
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence                   12223455556666666666655432111111    01111122356666666666665542 2233344455


Q ss_pred             HHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHH
Q 004632          203 AEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKAL  282 (741)
Q Consensus       203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  282 (741)
                      ...+...|+.++|...++.+.+.... +..............+....+.           ..+...+..+-.......|.
T Consensus       188 A~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~-----------~~l~~~l~~~p~~~~~~~A~  255 (1157)
T PRK11447        188 ALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASV-----------AALQKYLQVFSDGDSVAAAR  255 (1157)
T ss_pred             HHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhH-----------HHHHHHHHHCCCchHHHHHH
Confidence            55555556666666666555442110 0000000000000001111111           11222222222223345566


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC-
Q 004632          283 ESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE-  361 (741)
Q Consensus       283 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-  361 (741)
                      ..+..+......|+... ......+...|++++|...+++.++..  |.+..++..+..++.+.|++++|+..|++..+ 
T Consensus       256 ~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~  332 (1157)
T PRK11447        256 SQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALAL  332 (1157)
T ss_pred             HHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66665544333333322 123455677899999999999998865  78888999999999999999999999988753 


Q ss_pred             -CCc---ccHH------------HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 004632          362 -RNI---LSWN------------MLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHV  425 (741)
Q Consensus       362 -~~~---~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  425 (741)
                       |+.   ..|.            .....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+.+
T Consensus       333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a  411 (1157)
T PRK11447        333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA  411 (1157)
T ss_pred             CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             321   1121            22446778999999999999999862 334556667778899999999999999999


Q ss_pred             HHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCC------------chHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004632          426 IKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKS------------VVMWNSMICGFYQNGNSLEAINLFHQMYLN  493 (741)
Q Consensus       426 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  493 (741)
                      ++..+....++..+...|. .++.++|..+++.+....            ...+..+...+...|++++|++.|++..+.
T Consensus       412 L~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~  490 (1157)
T PRK11447        412 LRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL  490 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9998887777777888775 467899999988765421            123455677788999999999999999885


Q ss_pred             CCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCC----CH----
Q 004632          494 CLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSER----NV----  565 (741)
Q Consensus       494 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~----  565 (741)
                      . +-+...+..+...+.+.|++++|...++.+.+..+. ++..+..+...+...++.++|...++.+...    +.    
T Consensus       491 ~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~  568 (1157)
T PRK11447        491 D-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA  568 (1157)
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence            3 234667778888999999999999999999875533 4444555555677899999999999988632    11    


Q ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH
Q 004632          566 -----VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC  640 (741)
Q Consensus       566 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  640 (741)
                           ..+..+...+...|+.++|..+++.     ..++...+..+...+.+.|++++|+..|+++.+.. +.+...+..
T Consensus       569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~  642 (1157)
T PRK11447        569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLG  642 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence                 1123456678899999999999872     23355577778889999999999999999999854 335778889


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHh
Q 004632          641 MVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN------GYYTLLSNIYA  712 (741)
Q Consensus       641 l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~  712 (741)
                      ++.+|...|++++|.+.++.. . .+.+...+..+..++...|++++|.+.+++++...|+++      .++..++.++.
T Consensus       643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~  722 (1157)
T PRK11447        643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA  722 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence            999999999999999999988 3 344566778888889999999999999999999877654      36777899999


Q ss_pred             hcCChHHHHHHHHHHHh-CCCc
Q 004632          713 EEGNWDEFGKVRSIMEV-TGLK  733 (741)
Q Consensus       713 ~~g~~~~A~~~~~~~~~-~~~~  733 (741)
                      ..|++++|++.|++.+. .|+.
T Consensus       723 ~~G~~~~A~~~y~~Al~~~~~~  744 (1157)
T PRK11447        723 QTGQPQQALETYKDAMVASGIT  744 (1157)
T ss_pred             HcCCHHHHHHHHHHHHhhcCCC
Confidence            99999999999999865 4453

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2e-27  Score=271.84  Aligned_cols=626  Identities=10%  Similarity=0.049  Sum_probs=389.3

Q ss_pred             HHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH-----------
Q 004632           33 TRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIY-----------   98 (741)
Q Consensus        33 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-----------   98 (741)
                      -..++.....++.+.|...++++..  | |...+..++..+.+.|+.++|...++++.+..  |+...+           
T Consensus        32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~  109 (1157)
T PRK11447         32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLST  109 (1157)
T ss_pred             HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcC
Confidence            3445556666666666666665432  3 34555666666666666666666666665543  222111           


Q ss_pred             ------HHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhh-hhHHHHHhHhcCChhHHHHHHccCCC--C-CceeHHHHH
Q 004632           99 ------PSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVI-QTSILCTYGEFGCLDDARKVFDKMTS--R-DVVSWSSII  168 (741)
Q Consensus        99 ------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li  168 (741)
                            ..+.+.+...|++++|...++.+.+.+ +|+... ...........|+.++|.+.++++.+  | +...+..+.
T Consensus       110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA  188 (1157)
T PRK11447        110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA  188 (1157)
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                  222345566666666666666666543 222211 11111112234666666666666654  2 233455555


Q ss_pred             HHHHhCCChhHHHHHHHHhHHCC------------------CCCC-hhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 004632          169 ASYFDNADVSEGLKMFHSMVREG------------------VEPD-FVTMLSLAEACGELCSLRPARSIHGHVLRRKIKI  229 (741)
Q Consensus       169 ~~~~~~g~~~~a~~~~~~m~~~~------------------~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  229 (741)
                      ..+...|++++|+..++++....                  ..++ ...+...+..+-.....+.+...+....+....|
T Consensus       189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp  268 (1157)
T PRK11447        189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP  268 (1157)
T ss_pred             HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence            56666666666666666654321                  1111 1112222222222233444555555544443334


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHH----
Q 004632          230 DGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN-LITLI----  301 (741)
Q Consensus       230 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~----  301 (741)
                      +... ......+...|++++|+..|++...   .+...+..+...+.+.|++++|+..|++..+...... ...+.    
T Consensus       269 ~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        269 AFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             chHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            3222 2334567778899999999888654   3456788888888899999999999988877533221 11111    


Q ss_pred             --------HHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcccHHHH
Q 004632          302 --------TVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE--R-NILSWNML  370 (741)
Q Consensus       302 --------~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l  370 (741)
                              .....+.+.|++++|...++++++..  |.+...+..+..++...|++++|++.|++...  | +...+..+
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L  425 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL  425 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                    12335567788888888888888765  67777778888888888888888888887653  2 33445555


Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCC--------CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004632          371 ISEYARKGMSKEALELLVQMQTWGLM--------PDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDM  442 (741)
Q Consensus       371 i~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  442 (741)
                      ...+. .+++++|+.+++.+......        .....+......+...|++++|.+.++.+++..|.+..++..+...
T Consensus       426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~  504 (1157)
T PRK11447        426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD  504 (1157)
T ss_pred             HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            55553 45678888777665332100        0011233344456667777777777777777777666666677777


Q ss_pred             HHhcCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632          443 YSKCGFKNLAYLLFERIQQ--K-SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK  519 (741)
Q Consensus       443 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  519 (741)
                      |.+.|++++|...++++.+  | ++..+..+...+...+++++|+..++.+......++...+.                
T Consensus       505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~----------------  568 (1157)
T PRK11447        505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA----------------  568 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH----------------
Confidence            7777777777777766543  2 33334444444556677777777666543221111111000                


Q ss_pred             HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004632          520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN  599 (741)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~  599 (741)
                         ..+       ....+......+...|+.++|..+++. ..++...+..+...+.+.|++++|+..|+++.+  ..|+
T Consensus       569 ---~~l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~  635 (1157)
T PRK11447        569 ---QRL-------QSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPG  635 (1157)
T ss_pred             ---HHH-------hhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence               000       001123455677889999999999984 234556777888899999999999999999999  5675


Q ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-C---CC---CHHHH
Q 004632          600 -EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-F---PA---NGSIW  670 (741)
Q Consensus       600 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~---~~---~~~~~  670 (741)
                       ...+..+...+...|++++|++.++.+.+.. +.+...+..++.++...|++++|.++++++ . .   +|   +...+
T Consensus       636 ~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~  714 (1157)
T PRK11447        636 NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVL  714 (1157)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHH
Confidence             5588888899999999999999999887632 234566777888999999999999999998 2 1   22   22456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          671 GALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       671 ~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      ..+...+...|++++|+..|++++.
T Consensus       715 ~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        715 RDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6678888999999999999999984

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=9.4e-26  Score=245.22  Aligned_cols=627  Identities=9%  Similarity=-0.017  Sum_probs=368.9

Q ss_pred             CChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHH
Q 004632           74 NFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVF  153 (741)
Q Consensus        74 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  153 (741)
                      |++++|+..|++..+.. +-+..++..+...+...|++++|+..+++..+... .|...+..+ ..   .+++++|..++
T Consensus        58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~---i~~~~kA~~~y  131 (987)
T PRK09782         58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AA---IPVEVKSVTTV  131 (987)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HH---hccChhHHHHH
Confidence            66666666666666543 12244556666666666666666666666665531 222222222 11   16666666666


Q ss_pred             ccCCC--CC-ceeHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCChhhHHHH-HHHhcccCChhhHHHHHHH
Q 004632          154 DKMTS--RD-VVSWSSIIAS--------YFDNADVSEGLKMFHSMVREGVEPDFVTMLSL-AEACGELCSLRPARSIHGH  221 (741)
Q Consensus       154 ~~~~~--~~-~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~  221 (741)
                      +++..  |+ ...+..+...        |.+.   ++|.+.++ .......|+..+.... .+.+.+.|+++.|..++..
T Consensus       132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~  207 (987)
T PRK09782        132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE  207 (987)
T ss_pred             HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            66643  32 2222222222        3333   34444443 2222223333333333 5666666666666666666


Q ss_pred             HHHhcCCCchHHHHHHHHHHHh-cCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhh
Q 004632          222 VLRRKIKIDGPLGNSFIVMYSK-CGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEE-PNLIT  299 (741)
Q Consensus       222 ~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t  299 (741)
                      +.+.++.. ......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.+.++++...-.. |...+
T Consensus       208 L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~  285 (987)
T PRK09782        208 ARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS  285 (987)
T ss_pred             HHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence            66665332 3334455556665 355 66666665544456667777777777777777777777776654322 55555


Q ss_pred             HHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHH--HHc
Q 004632          300 LITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEY--ARK  377 (741)
Q Consensus       300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~  377 (741)
                      +..++.-.....  ..+..-+..    ...++-......++..+.+.++++.++++.. ....+. .  ..++..  ...
T Consensus       286 ~~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~  355 (987)
T PRK09782        286 WLYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVAT  355 (987)
T ss_pred             HHHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhcccc
Confidence            544433222111  111111111    1111222333445777788888887776633 222222 1  222222  233


Q ss_pred             CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC---cchhHHHHHHHHHhcCC---HHH
Q 004632          378 GMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK---DEFVQSSLIDMYSKCGF---KNL  451 (741)
Q Consensus       378 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~---~~~  451 (741)
                      +...++...+..|.+. .+-+......+.-.....|+.++|.+++.........   +..+...++..|.+.+.   ...
T Consensus       356 ~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        356 RNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             CchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence            5666666666666654 1224444444444456777888888888877764221   12255577777777665   222


Q ss_pred             HHHH-------------------------HHhccC---C--CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004632          452 AYLL-------------------------FERIQQ---K--SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT  501 (741)
Q Consensus       452 a~~~-------------------------~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~  501 (741)
                      +..+                         +.....   +  +...|..+..++.. +++++|+..+.+....  .|+...
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~  511 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ  511 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence            2222                         111111   1  34556666666665 7777788877776654  355544


Q ss_pred             HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhc
Q 004632          502 FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERN---VVSWSAMIDCYGMH  578 (741)
Q Consensus       502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~  578 (741)
                      ...+...+...|++++|...++.+...  +|+...+..+...+.+.|++++|...+++..+.+   ...+..+.......
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~  589 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP  589 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence            444455556788888888888876543  2333445556667777888888888887776422   22222333334445


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHH
Q 004632          579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI  658 (741)
Q Consensus       579 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  658 (741)
                      |++++|...+++..+  ..|+...+..+..++.+.|++++|+..++++.+.. +.+...+..++.++...|++++|++.+
T Consensus       590 Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888888888888887  56776677777778888888888888888887743 234567777777888888888888888


Q ss_pred             HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          659 HSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       659 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      ++.  ..|.+...+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.|.+-+++...-.
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~  741 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS  741 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            877  3455677778888888888888888888888888888888888888888888888888888777655433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=1.3e-23  Score=228.75  Aligned_cols=665  Identities=10%  Similarity=0.015  Sum_probs=446.9

Q ss_pred             HHHHHHHHHHhCCCC--ChhhhHHHHH--HHHccCChhhHHHhhccCCC--CC-ccchHHHHHHHHhcCChhHHHHHHHH
Q 004632           13 LTRLHAHLLVTGLHY--DPPASTRLIE--SYAEMGSLRSSRLVFDTFKE--PD-SFMWAVLIKCYMWNNFFEESILLYHK   85 (741)
Q Consensus        13 ~~~~~~~~~~~~~~~--~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~   85 (741)
                      +..+.....+.++.|  .-.++-.++.  .+...|++++|...|+...+  |+ ..++..+.+.|...|++++|+..+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~k  103 (987)
T PRK09782         24 ADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLED  103 (987)
T ss_pred             hhhcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            333444445555543  1122233333  33444999999999998764  54 56788899999999999999999999


Q ss_pred             HHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHH--------hHhcCChhHHHHHHccCC
Q 004632           86 MIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCT--------YGEFGCLDDARKVFDKMT  157 (741)
Q Consensus        86 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~  157 (741)
                      ..+.  .|+...|..++..+   ++..+|..+++++.+.. +.+..++..+...        |.+.+....+++  ....
T Consensus       104 Av~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~  175 (987)
T PRK09782        104 QLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF  175 (987)
T ss_pred             HHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh
Confidence            9876  45555555444333   88899999999999886 3334455555554        777766666666  3333


Q ss_pred             CCC--ceeHHHH-HHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcc-cCChhhHHHHHHHHHHhcCCCchHH
Q 004632          158 SRD--VVSWSSI-IASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGE-LCSLRPARSIHGHVLRRKIKIDGPL  233 (741)
Q Consensus       158 ~~~--~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~  233 (741)
                      .|+  ....... ...|.+.|++++|+++++++.+.+.. +..-...+-.++.. .++ +.+..++..    .++.+..+
T Consensus       176 ~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l  249 (987)
T PRK09782        176 AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQS  249 (987)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHH
Confidence            343  3333444 88999999999999999999988633 33334555556665 355 666666442    44578899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCC-----CCcchHH------------------------------HHHHHHHhcCCh
Q 004632          234 GNSFIVMYSKCGDLLSAERTFVKIEK-----RCTTSWT------------------------------AMISCYNRSGWF  278 (741)
Q Consensus       234 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~------------------------------~li~~~~~~~~~  278 (741)
                      +..+...|.+.|+.++|.++++++..     +...+|-                              .++..+.+.+++
T Consensus       250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (987)
T PRK09782        250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY  329 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence            99999999999999999999998864     1111221                              123344444555


Q ss_pred             hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHh
Q 004632          279 QKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA  358 (741)
Q Consensus       279 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  358 (741)
                      +.+.++.      ++.|.......-..+....+...++......+.+..  |.+......+.-.....|+.++|..+|+.
T Consensus       330 ~~~~~~~------~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~  401 (987)
T PRK09782        330 DAAQKLL------ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQ  401 (987)
T ss_pred             HHHHHHh------cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5333331      123333322111112223355566666666666553  45666666666667777777777777776


Q ss_pred             cCC--CCc----ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHH---HHHHHHhc
Q 004632          359 IGE--RNI----LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQI---HGHVIKID  429 (741)
Q Consensus       359 ~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~  429 (741)
                      ..+  ++.    ..-+-++..|.+.+......+...-.    -+++..+-      |.-.|+...+...   +..++...
T Consensus       402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~  471 (987)
T PRK09782        402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM  471 (987)
T ss_pred             hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc----cccccchh------HHHHhhhhhhhhhHHHHHHhcccC
Confidence            543  111    12335566666665533222221111    11111111      1122333333333   33333444


Q ss_pred             CC--cchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHH--HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004632          430 CK--DEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMI--CGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTA  505 (741)
Q Consensus       430 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l  505 (741)
                      +.  ...++..+..++.. ++.++|...+.+.....+..++.+.  ..+...|++++|...|+++...  +|+...+..+
T Consensus       472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l  548 (987)
T PRK09782        472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA  548 (987)
T ss_pred             CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence            44  44488888888887 7888899977766554344444443  4446899999999999997654  4555556677


Q ss_pred             HHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHH
Q 004632          506 IQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLND  583 (741)
Q Consensus       506 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~  583 (741)
                      ...+.+.|+.+.|...++...+..+. ....+..+.......|++++|...+++..+  |+...|..+..++.+.|++++
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHH
Confidence            77888999999999999999876532 223333333444456999999999999884  888899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-
Q 004632          584 AASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-  661 (741)
Q Consensus       584 A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-  661 (741)
                      |+..+++..+  ..|+.. .+..+..++...|++++|+..++++.+.. +-+...+..++.++...|++++|+..+++. 
T Consensus       628 A~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        628 AVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999  678655 67777778999999999999999999853 335778889999999999999999999998 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 004632          662 PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNW  717 (741)
Q Consensus       662 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  717 (741)
                      ...| +..+............+++.+.+.+++....+|... +....+.++...+++
T Consensus       705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~  760 (987)
T PRK09782        705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV  760 (987)
T ss_pred             hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence            4445 456777788888889999999999999999999877 777777777766665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=4.6e-23  Score=197.85  Aligned_cols=443  Identities=13%  Similarity=0.094  Sum_probs=352.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Q 004632          265 WTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYA  344 (741)
Q Consensus       265 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~  344 (741)
                      ...|..-..+.|++.+|.+.-...-..+ +.+..+...+-..+.+..+++.....-....+..  |.-...+..+.+++.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~k  127 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILK  127 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHH
Confidence            3445555666677777766544332221 1112222222233344444444433333333322  556677777888888


Q ss_pred             hcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCChHHHHH
Q 004632          345 ECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSA-CGNVGSLQLGLQ  420 (741)
Q Consensus       345 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~  420 (741)
                      ..|++++|...++.+.+   ..+..|..+..++...|+.+.|.+.|.+..+  +.|+.....+-+.- ....|++++|..
T Consensus       128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence            88888888888877653   3467888999999999999999999998886  57777665554444 456899999999


Q ss_pred             HHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004632          421 IHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEM  497 (741)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  497 (741)
                      .|.++++..+....+|+.+...+..+|+...|+..|++...-|+   ..|-.|...|...+.+++|+..|.+....  .|
T Consensus       206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp  283 (966)
T KOG4626|consen  206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP  283 (966)
T ss_pred             HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence            99999999998888999999999999999999999999877554   57888999999999999999999987764  55


Q ss_pred             C-HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHH
Q 004632          498 D-EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMID  573 (741)
Q Consensus       498 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~  573 (741)
                      + ...+..+...|...|+.+.|+..+++.++..+. -+..|+.+..++-..|++.+|...+++...  | ...+.+.|..
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            5 567778888889999999999999999886543 467899999999999999999999998874  3 4678899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCCh
Q 004632          574 CYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDI  651 (741)
Q Consensus       574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  651 (741)
                      .|...|.++.|..+|....+  +.|... .++.|...|-++|++++|+..++++++  +.|+ ...|+.++..|-..|+.
T Consensus       363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence            99999999999999999999  889865 889999999999999999999999987  5666 78899999999999999


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 004632          652 EGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDE  719 (741)
Q Consensus       652 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  719 (741)
                      +.|++.+.++ ...| -......|...+..+|+.++|+..|+.++++.|+.+.++..|+.++--.-+|.+
T Consensus       439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence            9999999998 4444 577899999999999999999999999999999999999999877654444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=4.4e-23  Score=197.98  Aligned_cols=419  Identities=12%  Similarity=0.124  Sum_probs=350.6

Q ss_pred             HHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHc
Q 004632          301 ITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARK  377 (741)
Q Consensus       301 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  377 (741)
                      ..+..-..+.|++.+|++.-...-...  |.+......+..++....++++....-....   .....+|..+...+-..
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            334445567788888887765554443  3444444555566666666666544332222   23456899999999999


Q ss_pred             CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHH
Q 004632          378 GMSKEALELLVQMQTWGLMP-DSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLF  456 (741)
Q Consensus       378 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  456 (741)
                      |++++|+..++.+.+.  +| ....|..+..++...|+.+.|.+.+..+++.+|..-.+.+.+.......|+.++|...+
T Consensus       130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY  207 (966)
T KOG4626|consen  130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY  207 (966)
T ss_pred             chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence            9999999999999985  55 45678888889999999999999999999999887778888889999999999999999


Q ss_pred             HhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCC
Q 004632          457 ERIQQKS---VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMD-EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRK  532 (741)
Q Consensus       457 ~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  532 (741)
                      .+..+.+   .+.|+.|...+...|+...|++.|++..+  +.|+ ...|..+...|...+.++.|...+.+.....+. 
T Consensus       208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-  284 (966)
T KOG4626|consen  208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-  284 (966)
T ss_pred             HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-
Confidence            8776543   36899999999999999999999999877  4555 567888999999999999999999888664322 


Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 004632          533 DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN-VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILW  608 (741)
Q Consensus       533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~  608 (741)
                      ....+..+...|...|..+-|+..+++..+  |+ ...|+.|..++-..|++.+|...|.+...  +.|+.. +.+.|..
T Consensus       285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn  362 (966)
T KOG4626|consen  285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN  362 (966)
T ss_pred             chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence            455666777778899999999999999884  54 67999999999999999999999999999  788764 8899999


Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 004632          609 ACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPAN-GSIWGALLNGCRIHKRIDV  685 (741)
Q Consensus       609 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~  685 (741)
                      .|...|.+++|..+|....+  +.|. ....+.|...|-..|++++|+..+++. ...|+ ...+..++..+-..|+...
T Consensus       363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~  440 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA  440 (966)
T ss_pred             HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence            99999999999999999987  3444 667889999999999999999999998 66665 6799999999999999999


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          686 MKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       686 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      |.+.+.+++..+|.-+.++..|+.+|..+|+..+|++-|+..++-
T Consensus       441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999988773

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.3e-19  Score=183.88  Aligned_cols=574  Identities=11%  Similarity=0.058  Sum_probs=400.0

Q ss_pred             hhHHHHHHccCCCCCcee-HHHHHHH--HHhCCChhHHHHHHHHhHHC--CCCCChhhHHHHHHHhcccCChhhHHHHHH
Q 004632          146 LDDARKVFDKMTSRDVVS-WSSIIAS--YFDNADVSEGLKMFHSMVRE--GVEPDFVTMLSLAEACGELCSLRPARSIHG  220 (741)
Q Consensus       146 ~~~a~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  220 (741)
                      ++.|...|..+...++.- .-.+..+  ....|++..|+.+|+.....  ..+||...  .+-..+.+.|+.+.|...|.
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~  223 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE  223 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence            577888777776533322 2222233  34578899999999986543  33444421  22234468888889988888


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhcC---CHHHHHHHHhccC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004632          221 HVLRRKIKIDGPLGNSFIVMYSKCG---DLLSAERTFVKIE---KRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEE  294 (741)
Q Consensus       221 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  294 (741)
                      ..++..+ -++.++..|...-....   .+..+...+...-   ..++...+.|...|.-.|++..++.+...+......
T Consensus       224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~  302 (1018)
T KOG2002|consen  224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN  302 (1018)
T ss_pred             HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence            8887755 23333333333222223   3445555554432   257778899999999999999999999888775311


Q ss_pred             --CChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCc-chHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcccHH
Q 004632          295 --PNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEY-DYLGPALIEFYAECGKMSECEKVIHAIGE--R-NILSWN  368 (741)
Q Consensus       295 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~  368 (741)
                        .-...|-.+.+++-..|+++.|...|-+..+..  |++ ......+..+|.+.|+++.+...|+.+..  | +..+..
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~  380 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK  380 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence              123457788889999999999999998887765  333 44557889999999999999999998864  3 344555


Q ss_pred             HHHHHHHHcC----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH----HhcCCcch-hHHHH
Q 004632          369 MLISEYARKG----MSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVI----KIDCKDEF-VQSSL  439 (741)
Q Consensus       369 ~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~-~~~~l  439 (741)
                      .|...|...+    ..+.|..++.+..+. .+.|...|..+...+. .+++..+...|..+.    ..+...+. +.+.+
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv  458 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNV  458 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence            5666666654    456677777776654 2344555555444443 444444466666554    33333444 89999


Q ss_pred             HHHHHhcCCHHHHHHHHHhccCC-------Cc------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 004632          440 IDMYSKCGFKNLAYLLFERIQQK-------SV------VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT-FLTA  505 (741)
Q Consensus       440 ~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l  505 (741)
                      +..+...|.++.|...|......       +.      .+--.+...+-..++++.|.+.|..+.+.  .|+-+. |..+
T Consensus       459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl  536 (1018)
T KOG2002|consen  459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL  536 (1018)
T ss_pred             HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence            99999999999999999765432       22      12223455566678999999999999875  355433 3333


Q ss_pred             HHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHH----
Q 004632          506 IQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS-----ERNVVSWSAMIDCYG----  576 (741)
Q Consensus       506 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~----  576 (741)
                      .......+...+|...+......+ ..++..+..+.+.+.+...+..|.+-|+.+.     .+|..+.-+|...|.    
T Consensus       537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~  615 (1018)
T KOG2002|consen  537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH  615 (1018)
T ss_pred             hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence            323334577788888888776643 3356666777778888888888888555544     245555555665443    


Q ss_pred             --------hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632          577 --------MHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR  647 (741)
Q Consensus       577 --------~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (741)
                              ..+..++|+++|.+.+.  ..| |..+-+.+.-.++..|++.+|..+|.++.+... -...+|-.++.+|..
T Consensus       616 ~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e  692 (1018)
T KOG2002|consen  616 NPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE  692 (1018)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence                    23457889999999988  566 566788888889999999999999999998543 245567789999999


Q ss_pred             cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----------
Q 004632          648 SGDIEGAFKMIHSM----PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAE----------  713 (741)
Q Consensus       648 ~~~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----------  713 (741)
                      +|++..|+++|+..    .-..+..+...|..++.+.|.+.+|.+.+..+....|.++.+.+.++-+..+          
T Consensus       693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k  772 (1018)
T KOG2002|consen  693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK  772 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence            99999999999988    2345788899999999999999999999999999999999988887766543          


Q ss_pred             ---------cCChHHHHHHHHHHHhCCC
Q 004632          714 ---------EGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       714 ---------~g~~~~A~~~~~~~~~~~~  732 (741)
                               .+..+.|.++|++|.+.+-
T Consensus       773 ~t~eev~~a~~~le~a~r~F~~ls~~~d  800 (1018)
T KOG2002|consen  773 RTLEEVLEAVKELEEARRLFTELSKNGD  800 (1018)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                     3456678888888877543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=2.1e-19  Score=193.45  Aligned_cols=417  Identities=12%  Similarity=0.023  Sum_probs=262.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Q 004632          265 WTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYA  344 (741)
Q Consensus       265 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~  344 (741)
                      +......+.+.|++++|+..|++...  +.|+...|..+..++.+.|+++.|...+...++..  |++...+..+..+|.
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            44556677788888888888888776  35677777777788888888888888888877754  666677777777777


Q ss_pred             hcCChHHHHHHHHhcCCCC---cccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHH
Q 004632          345 ECGKMSECEKVIHAIGERN---ILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQI  421 (741)
Q Consensus       345 ~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  421 (741)
                      ..|++++|+..|......+   ......++.....    ..+........+                             
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~-----------------------------  252 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILE-----------------------------  252 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHh-----------------------------
Confidence            7777777766664432111   1111111111111    111111222211                             


Q ss_pred             HHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc---hHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-
Q 004632          422 HGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV---VMWNSMICG---FYQNGNSLEAINLFHQMYLNC-  494 (741)
Q Consensus       422 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~-  494 (741)
                            ..+........+...+ .....+....-+....+.+.   ..+..+...   ....+++++|...|+.....+ 
T Consensus       253 ------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~  325 (615)
T TIGR00990       253 ------TKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK  325 (615)
T ss_pred             ------cCCCCCCCHHHHHHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence                  1111111111111111 00000000010111101011   111111111   122467778888888777654 


Q ss_pred             CCC-CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHH
Q 004632          495 LEM-DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSA  570 (741)
Q Consensus       495 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  570 (741)
                      ..| ....+..+...+...|++++|...++...+..+. ....+..+...+...|++++|...|+++.+   .+...|..
T Consensus       326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  404 (615)
T TIGR00990       326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH  404 (615)
T ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            223 3445666666777788888888888887765422 345666777778888888888888887663   35677888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632          571 MIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG  649 (741)
Q Consensus       571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  649 (741)
                      +...+...|++++|...|++.++  +.|+. ..+..+...+.+.|++++|+..|++.++.. +.+...+..++.++...|
T Consensus       405 lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       405 RAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence            88888888899999999988888  56654 466677778888889999999988887742 334677888888888889


Q ss_pred             ChHHHHHHHHhC-CCCCC-HH-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 004632          650 DIEGAFKMIHSM-PFPAN-GS-------IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF  720 (741)
Q Consensus       650 ~~~~A~~~~~~~-~~~~~-~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  720 (741)
                      ++++|++.+++. ...|+ ..       .+...+..+...|++++|...++++++++|++..++..++++|.+.|++++|
T Consensus       482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA  561 (615)
T TIGR00990       482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA  561 (615)
T ss_pred             CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            999998888886 32222 11       1111222234468899999999999999998888888899999999999999


Q ss_pred             HHHHHHHHh
Q 004632          721 GKVRSIMEV  729 (741)
Q Consensus       721 ~~~~~~~~~  729 (741)
                      +.+|++..+
T Consensus       562 i~~~e~A~~  570 (615)
T TIGR00990       562 LKLFERAAE  570 (615)
T ss_pred             HHHHHHHHH
Confidence            999988765

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.90  E-value=8.4e-18  Score=171.05  Aligned_cols=676  Identities=12%  Similarity=0.097  Sum_probs=411.7

Q ss_pred             HHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCC--------CCCc---cchHHHHHHHHhc-------
Q 004632           12 KLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFK--------EPDS---FMWAVLIKCYMWN-------   73 (741)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~---~~~~~ll~~~~~~-------   73 (741)
                      -+.++..=+...+  ---.+|......|.+.|+.++.+.+++...        .+..   ..++.+...++..       
T Consensus        26 D~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~  103 (1018)
T KOG2002|consen   26 DATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK  103 (1018)
T ss_pred             ChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5555555344433  234578889999999999999999998765        1221   1122222222121       


Q ss_pred             ----CChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhH
Q 004632           74 ----NFFEESILLYHKMIREQATISNF-IYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDD  148 (741)
Q Consensus        74 ----~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  148 (741)
                          ..+..|..+|..........+.. .+..........-+.+.|...|....+.. +++.-..---....-..|++-.
T Consensus       104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~  182 (1018)
T KOG2002|consen  104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRG  182 (1018)
T ss_pred             chhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHH
Confidence                12234555555544332222221 12221111111122577777777777664 2222221111223334578888


Q ss_pred             HHHHHccCCC--CC--ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCC---hhhHHHHHHH
Q 004632          149 ARKVFDKMTS--RD--VVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCS---LRPARSIHGH  221 (741)
Q Consensus       149 a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~  221 (741)
                      |+.+|.....  |.  +...-.+..++.+.|+.+.|+..|....+.+. .++.++..|-..--...+   +..+..++..
T Consensus       183 al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~  261 (1018)
T KOG2002|consen  183 ALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQR  261 (1018)
T ss_pred             HHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            8888877432  21  11222233556678888888888888876532 122233222222222233   3334444433


Q ss_pred             HHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004632          222 VLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRC------TTSWTAMISCYNRSGWFQKALESFVKMLEVKEEP  295 (741)
Q Consensus       222 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  295 (741)
                      ..+.. .-++.+.+.|.+.|.-.|++..+..+.+.+...+      ..+|-.+.+++-..|++++|...|.+....  .|
T Consensus       262 ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~  338 (1018)
T KOG2002|consen  262 AYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DN  338 (1018)
T ss_pred             HHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CC
Confidence            33322 2356677778888888888888888877765432      225777888888888888888888776654  34


Q ss_pred             Ch--hhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcC----ChHHHHHHHHhcCCC---Cccc
Q 004632          296 NL--ITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECG----KMSECEKVIHAIGER---NILS  366 (741)
Q Consensus       296 ~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~  366 (741)
                      |.  ..+.-+.+.+...|+++.+...|+.+.+..  |+...+...|...|...+    ..+.|..++.+..++   |...
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a  416 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEA  416 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence            43  344556777888888888888888888876  777788888888888775    556677777666543   4445


Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh-----cCCc---c-
Q 004632          367 WNMLISEYARKGMSKEALELLVQM----QTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKI-----DCKD---E-  433 (741)
Q Consensus       367 ~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~-  433 (741)
                      |-.+...+... ++..++..|...    ...+..+.+...+.+.......|+++.|...+..+...     +++.   . 
T Consensus       417 ~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~  495 (1018)
T KOG2002|consen  417 WLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN  495 (1018)
T ss_pred             HHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence            55555555443 333336665553    34455567777788887888888888888888877655     1111   0 


Q ss_pred             h-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004632          434 F-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVM---WNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQAC  509 (741)
Q Consensus       434 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~  509 (741)
                      . .-..+..++-..++.+.|.+.|..+....+.-   |-.+.......++..+|..++++..... ..++..+..+...+
T Consensus       496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~  574 (1018)
T KOG2002|consen  496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLH  574 (1018)
T ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHH
Confidence            1 34456666677778888888888877654432   2222222233467778888888776542 23333344444456


Q ss_pred             hccccHHhHHHHHHHHHH-cCCCCCchhHHHHHHHHHh------------cCCHHHHHHHHHhcCC---CCHHHHHHHHH
Q 004632          510 SNIGQLEKGKWVHHKLIS-YGVRKDIYIDTALTDMYAK------------CGDLQTAQRVFDSMSE---RNVVSWSAMID  573 (741)
Q Consensus       510 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~---~~~~~~~~l~~  573 (741)
                      .+...+..|..-|....+ ....+|++..-+|.+.|..            .+..++|.+.|.++..   .|...-|-+.-
T Consensus       575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi  654 (1018)
T KOG2002|consen  575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI  654 (1018)
T ss_pred             HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence            666677777776665533 2233566666666665542            2346778888887764   35566667777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChH
Q 004632          574 CYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIE  652 (741)
Q Consensus       574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~  652 (741)
                      .++..|++..|..+|.+..+.. .-...+|..+.++|...|+|..|+++|+...+ ....-+..+...|++++.+.|.+.
T Consensus       655 VLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~  733 (1018)
T KOG2002|consen  655 VLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ  733 (1018)
T ss_pred             hhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence            8888888888888888888863 23455778888888888888888888888877 444456778888888888888888


Q ss_pred             HHHHHHHhC--CCCCCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHhccCCC
Q 004632          653 GAFKMIHSM--PFPANGSIWGALLNGCR-------------------IHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       653 ~A~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      +|.+.+..+  ..|.++.+..+++-...                   ..+..+.|.++|..+....+.
T Consensus       734 eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  734 EAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            888888776  22333333333332211                   224567777888888776655

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=1.1e-19  Score=186.28  Aligned_cols=292  Identities=15%  Similarity=0.096  Sum_probs=199.5

Q ss_pred             HHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHH
Q 004632          443 YSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMD---EVTFLTAIQACSNIGQLE  516 (741)
Q Consensus       443 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~  516 (741)
                      +...|++++|...|.++.+.   +..++..+...+...|++++|..+++.+...+..++   ...+..+...+...|+++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34445555555555544432   223445555555555555555555555554322111   133445555555566666


Q ss_pred             hHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 004632          517 KGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN------VVSWSAMIDCYGMHGQLNDAASLF  588 (741)
Q Consensus       517 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~  588 (741)
                      +|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+  |+      ...+..+...+...|++++|...|
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            6666666555432 22445555666666666666666666665542  11      123556777788899999999999


Q ss_pred             HHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 004632          589 KQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPAN  666 (741)
Q Consensus       589 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~  666 (741)
                      +++.+  ..|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|.+.|++++|.+.++++ ...|+
T Consensus       204 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        204 KKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99988  4565 44777778889999999999999999987543323466788899999999999999999998 45566


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh---cCChHHHHHHHHHHHhCCCccCCCC
Q 004632          667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAE---EGNWDEFGKVRSIMEVTGLKKVPGY  738 (741)
Q Consensus       667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~  738 (741)
                      ...+..++..+.+.|++++|...++++.+..|++......+ ..+..   .|+..+|...+++|.+++++++|++
T Consensus       282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~-~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL-DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH-HHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            67778888899999999999999999999999887544344 34443   5699999999999999999999974

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=2.7e-18  Score=183.81  Aligned_cols=331  Identities=11%  Similarity=-0.024  Sum_probs=264.4

Q ss_pred             ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 004632          365 LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYS  444 (741)
Q Consensus       365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  444 (741)
                      .....++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|...++.++...|....++..+...+.
T Consensus        43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~  121 (656)
T PRK15174         43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL  121 (656)
T ss_pred             cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            345567788889999999999999988863 2234445555566777999999999999999999988888999999999


Q ss_pred             hcCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHH
Q 004632          445 KCGFKNLAYLLFERIQQ--K-SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWV  521 (741)
Q Consensus       445 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  521 (741)
                      ..|++++|...+++...  | ++..+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence            99999999999988765  2 45678888999999999999999999887653322 2233233 347788999999999


Q ss_pred             HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHc
Q 004632          522 HHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLND----AASLFKQMLDS  594 (741)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~  594 (741)
                      ++.+.+....++......+...+...|++++|...++++.+   .+...+..+...+...|++++    |...|+++.+ 
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence            99987765444555555667788899999999999998774   356778888999999999885    8999999998 


Q ss_pred             CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 004632          595 GIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANG-SIWG  671 (741)
Q Consensus       595 ~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-~~~~  671 (741)
                       ..|+. ..+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|+..++++ ...|+. ..+.
T Consensus       279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~  356 (656)
T PRK15174        279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR  356 (656)
T ss_pred             -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence             67764 478888889999999999999999998853 234566778899999999999999999988 344443 3444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      .+..++...|++++|...++++++..|++.
T Consensus       357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        357 YAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            456778899999999999999999998864

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=1.5e-17  Score=182.27  Aligned_cols=386  Identities=10%  Similarity=-0.021  Sum_probs=193.6

Q ss_pred             HHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHcCCch
Q 004632          305 GSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARKGMSK  381 (741)
Q Consensus       305 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~  381 (741)
                      ......|+.++|.+++.......  |.+...+..++..+...|++++|...+++..   ..+...+..++..+...|+++
T Consensus        23 ~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         23 QIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            33344455555554444444311  3444445555555555555555555555532   223444556666667777777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 004632          382 EALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ  461 (741)
Q Consensus       382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  461 (741)
                      +|+..+++..+. .+.+.. +..+..++...|+.+.|...++.+++..|....++..++..+...+..+.|...++....
T Consensus       101 eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        101 EALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             HHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence            777777777664 222333 555555666777777777777777777777666656667777777777777777766554


Q ss_pred             CCch--------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHhccccHHhHH
Q 004632          462 KSVV--------MWNSMICGFY-----QNGNS---LEAINLFHQMYLN-CLEMDEV-TFL----TAIQACSNIGQLEKGK  519 (741)
Q Consensus       462 ~~~~--------~~~~l~~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~~~~~~a~  519 (741)
                       ++.        .....+....     ..+++   ++|++.++.+.+. ...|+.. .+.    ..+..+...|++++|.
T Consensus       179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~  257 (765)
T PRK10049        179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI  257 (765)
T ss_pred             -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence             221        0111111111     11112   3444445444432 1111110 000    0011223334444444


Q ss_pred             HHHHHHHHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004632          520 WVHHKLISYGVR-KDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP  598 (741)
Q Consensus       520 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p  598 (741)
                      ..|+.+.+.+.+ |+ .....                               +...|...|++++|+..|+++.+.  .|
T Consensus       258 ~~~~~ll~~~~~~P~-~a~~~-------------------------------la~~yl~~g~~e~A~~~l~~~l~~--~p  303 (765)
T PRK10049        258 SEYQRLKAEGQIIPP-WAQRW-------------------------------VASAYLKLHQPEKAQSILTELFYH--PE  303 (765)
T ss_pred             HHHHHhhccCCCCCH-HHHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHhhc--CC
Confidence            444444433211 11 01111                               234455555555555555554442  22


Q ss_pred             C-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----------CCC---ccHHHHHHHHHHhcCChHHHHHHHH
Q 004632          599 N-----EVTFMNILWACSHSGSVEEGKFYFNAMRIFGV-----------EPD---LQHYACMVDLLSRSGDIEGAFKMIH  659 (741)
Q Consensus       599 ~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~  659 (741)
                      .     ......+..++...|++++|.++++.+.+...           .|+   ...+..++..+...|+.++|++.++
T Consensus       304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~  383 (765)
T PRK10049        304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR  383 (765)
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1     12233334444555555555555555544210           011   1123344555555666666666666


Q ss_pred             hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          660 SM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       660 ~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ++  ..|.+...+..++..+...|++++|++.++++++..|++...+..++..+...|++++|...++++++
T Consensus       384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            55  23444555555555566666666666666666666666666666666666666666666666665554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=9.3e-18  Score=183.84  Aligned_cols=372  Identities=10%  Similarity=0.027  Sum_probs=249.0

Q ss_pred             CCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004632          330 PEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSL  406 (741)
Q Consensus       330 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  406 (741)
                      |.++....-.+.+....|+.++|++++.+...   .+...+..+...+...|++++|...+++..+. -+.+......+.
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la   90 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLI   90 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence            45556666677777888888888888877653   23334777778888888888888888887764 122344455566


Q ss_pred             HHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHH
Q 004632          407 SACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEA  483 (741)
Q Consensus       407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A  483 (741)
                      ..+...|++++|...++.+++..+.... +..+..++...|+.++|...++++.+.   +...+..+...+...|..++|
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A  169 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA  169 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence            6677788888888888888877777766 777777777778888887777776543   334455566666677777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH---HHHHHHHHhc
Q 004632          484 INLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDL---QTAQRVFDSM  560 (741)
Q Consensus       484 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~  560 (741)
                      +..++....   .|+....   +       ....+....    ..          .+.......+++   ++|+..++.+
T Consensus       170 l~~l~~~~~---~p~~~~~---l-------~~~~~~~~~----r~----------~~~~~~~~~~r~~~ad~Al~~~~~l  222 (765)
T PRK10049        170 LGAIDDANL---TPAEKRD---L-------EADAAAELV----RL----------SFMPTRSEKERYAIADRALAQYDAL  222 (765)
T ss_pred             HHHHHhCCC---CHHHHHH---H-------HHHHHHHHH----Hh----------hcccccChhHHHHHHHHHHHHHHHH
Confidence            777665432   2221000   0       000000000    00          000001111223   4555555554


Q ss_pred             CC-----CCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632          561 SE-----RNVV-SW----SAMIDCYGMHGQLNDAASLFKQMLDSGIK-PNEVTFMNILWACSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       561 ~~-----~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  629 (741)
                      .+     |+.. .+    ...+..+...|++++|+..|+++.+.+.. |+.. ...+..+|...|++++|+..|+++.+.
T Consensus       223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~  301 (765)
T PRK10049        223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYH  301 (765)
T ss_pred             HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence            41     2211 11    11133445779999999999999986422 3332 222466899999999999999998873


Q ss_pred             CCCC---CccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------C---HHHHHHHHHHHHhcCCHHHHHHH
Q 004632          630 GVEP---DLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-------------N---GSIWGALLNGCRIHKRIDVMKTI  689 (741)
Q Consensus       630 ~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-------------~---~~~~~~l~~~~~~~g~~~~a~~~  689 (741)
                      ....   .......++.++...|++++|.+.++++ ...|             +   ...+..+...+...|++++|++.
T Consensus       302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~  381 (765)
T PRK10049        302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR  381 (765)
T ss_pred             CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3211   1345666777889999999999999988 2222             2   23456677788999999999999


Q ss_pred             HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      ++++....|.++..+..++.++...|+.++|++.+++..+..
T Consensus       382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999887744

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=4e-18  Score=182.41  Aligned_cols=328  Identities=9%  Similarity=0.009  Sum_probs=274.8

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHh
Q 004632          400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQ  476 (741)
Q Consensus       400 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~  476 (741)
                      .....++..+...|+++.|..++...+...+.+..+...++......|+++.|...++++...   +...+..+...+..
T Consensus        43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~  122 (656)
T PRK15174         43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK  122 (656)
T ss_pred             cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            345566777889999999999999999999999888888888888999999999999988753   45678888899999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 004632          477 NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRV  556 (741)
Q Consensus       477 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  556 (741)
                      .|++++|...+++..... +.+...+..+...+...|++++|...++.+....+.+.. .+..+ ..+...|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHH
Confidence            999999999999998752 345667788889999999999999999988776554333 33333 347889999999999


Q ss_pred             HHhcCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHH----HHHHHHHHH
Q 004632          557 FDSMSER----NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEE----GKFYFNAMR  627 (741)
Q Consensus       557 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~----a~~~~~~~~  627 (741)
                      ++.+.+.    +...+..+...+...|++++|+..++++.+  ..|+ ...+..+...+...|++++    |...|+++.
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            9987642    333455567788899999999999999998  4565 4577778889999999986    899999998


Q ss_pred             HcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 004632          628 IFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYT  705 (741)
Q Consensus       628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  705 (741)
                      +.. +.+...+..++..+.+.|++++|+..+++.  ..|.+...+..+..++...|++++|...++++.+.+|+++..+.
T Consensus       278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~  356 (656)
T PRK15174        278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR  356 (656)
T ss_pred             hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence            853 235778889999999999999999999998  34556778888999999999999999999999999999887777


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632          706 LLSNIYAEEGNWDEFGKVRSIMEVTGLK  733 (741)
Q Consensus       706 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~  733 (741)
                      .++.++...|+.++|...|+++.+...+
T Consensus       357 ~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        357 YAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            7889999999999999999998875443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.85  E-value=1.1e-15  Score=154.81  Aligned_cols=632  Identities=12%  Similarity=0.078  Sum_probs=337.8

Q ss_pred             HHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhH
Q 004632           38 SYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSG  114 (741)
Q Consensus        38 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  114 (741)
                      .+...|++++|.+++.++..  | +...|.+|...|-..|+.+++...+-..-... +-|...|-.+.....+.|++.+|
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence            34445888888888877653  3 45678888888888888888877665543322 33445677777777788888888


Q ss_pred             HHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCc-e-------eHHHHHHHHHhCCChhHHHHHHHH
Q 004632          115 EKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDV-V-------SWSSIIASYFDNADVSEGLKMFHS  186 (741)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~a~~~~~~  186 (741)
                      .-.+.+.++.. +++....---...|.+.|+...|..-|.++-+.++ +       .--.++..+...++-+.|++.++.
T Consensus       227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88888888776 33444444445677778888888777776654211 1       222334555666666777777777


Q ss_pred             hHHCC-CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhc---------------------------CCCchHHHHHHH
Q 004632          187 MVREG-VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRK---------------------------IKIDGPLGNSFI  238 (741)
Q Consensus       187 m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li  238 (741)
                      ....+ -..+...+++++..+.+...++.+......+....                           +.++..+ ..+.
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~  384 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM  384 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence            66532 12334456666666666666666666555554422                           2222222 1111


Q ss_pred             HHHH--hcCCHHHHHHHHhccC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 004632          239 VMYS--KCGDLLSAERTFVKIE----KRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGW  312 (741)
Q Consensus       239 ~~~~--~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  312 (741)
                      -++.  +.+...+++..|-...    ..++..|..+..++...|++.+|+.+|..+.....--+...|-.+..++-..|.
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e  464 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE  464 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence            2222  2233333333332211    123335677777777777777777777777765444455567777777777777


Q ss_pred             hhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHH
Q 004632          313 LREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQT  392 (741)
Q Consensus       313 ~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  392 (741)
                      .+.|.+.|+.++...  |++..+...|..++.+.|+.++|.+.+..+..||...                       ...
T Consensus       465 ~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-----------------------~e~  519 (895)
T KOG2076|consen  465 YEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN-----------------------AEA  519 (895)
T ss_pred             HHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-----------------------hhh
Confidence            777777777777655  6777777777777777777777777777766554221                       011


Q ss_pred             CCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC-----------------------cchhHHHHHHHHHhcCCH
Q 004632          393 WGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-----------------------DEFVQSSLIDMYSKCGFK  449 (741)
Q Consensus       393 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~  449 (741)
                      .+..|+..........+...|+.++-..+-..++.....                       ..........+-.+.++.
T Consensus       520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  599 (895)
T KOG2076|consen  520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD  599 (895)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence            112222222222233333333333322222222211100                       000112222222222222


Q ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHhHHHHHHHHHH
Q 004632          450 NLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDE--VTFLTAIQACSNIGQLEKGKWVHHKLIS  527 (741)
Q Consensus       450 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~  527 (741)
                      ....+-...-                         ..+.--...|+..+.  ..+..++.++++.++..+|..+...+.+
T Consensus       600 ~~~~~~l~d~-------------------------~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~  654 (895)
T KOG2076|consen  600 NVMEKALSDG-------------------------TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALE  654 (895)
T ss_pred             HHhhhcccch-------------------------hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            1111111000                         000011111111111  1223334444455555555554444433


Q ss_pred             cCC-CCCc----hhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004632          528 YGV-RKDI----YIDTALTDMYAKCGDLQTAQRVFDSMSER-----N---VVSWSAMIDCYGMHGQLNDAASLFKQMLDS  594 (741)
Q Consensus       528 ~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  594 (741)
                      ... ..+.    ..-...+.+....+++..|...++.+...     +   ...|+...+.+.+.++-.--.+.+..+.. 
T Consensus       655 ~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~-  733 (895)
T KOG2076|consen  655 AYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV-  733 (895)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            211 1111    11122333444555666665555555421     1   23455444555554444333344443333 


Q ss_pred             CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHH-HHHHHh----------cCChHHHHHHHHhC
Q 004632          595 GIKPNE--VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACM-VDLLSR----------SGDIEGAFKMIHSM  661 (741)
Q Consensus       595 ~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~----------~~~~~~A~~~~~~~  661 (741)
                       ..|+.  ..+.....-....+.+..|+..+-++...  .|+...++.+ +-++..          .-.+-+++.++++.
T Consensus       734 -~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY  810 (895)
T KOG2076|consen  734 -KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRY  810 (895)
T ss_pred             -cCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence             23332  12222222345567777777777666553  3453333322 222211          11234566666665


Q ss_pred             ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------------hhHHHHHHHHhhcCChHHHHHHHH
Q 004632          662 ----PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN------------GYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       662 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                          .......++.+++++|...|-..-|...|+++++..|.+.            .+-..|.-+|.++|+...|.++++
T Consensus       811 ~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~  890 (895)
T KOG2076|consen  811 KELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE  890 (895)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence                1123567888999999999999999999999999976532            245566679999999999999887


Q ss_pred             H
Q 004632          726 I  726 (741)
Q Consensus       726 ~  726 (741)
                      +
T Consensus       891 k  891 (895)
T KOG2076|consen  891 K  891 (895)
T ss_pred             h
Confidence            4

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.84  E-value=2.8e-15  Score=151.98  Aligned_cols=616  Identities=11%  Similarity=0.011  Sum_probs=381.0

Q ss_pred             HHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCC---CCCceeHHHHHHHHHhCCChhH
Q 004632          103 RACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT---SRDVVSWSSIIASYFDNADVSE  179 (741)
Q Consensus       103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~  179 (741)
                      +.+...|+.++|.+++.+.++.. +.....|..|...|-..|+.+++...+-...   ..|...|-.+.....+.|++.+
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence            33344499999999999998876 5667788888889999999988887664443   3455678888888888999999


Q ss_pred             HHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHH----HHHHHhcCCHHHHHHHHh
Q 004632          180 GLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSF----IVMYSKCGDLLSAERTFV  255 (741)
Q Consensus       180 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~  255 (741)
                      |.-+|.+.++.. +++...+-.-...|-+.|+...|..-+.++.+..++.|..-...+    +..+...++-+.|.+.++
T Consensus       226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999888764 334444445556677889999998888888887664444433333    445666677788888887


Q ss_pred             ccCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC-
Q 004632          256 KIEK-----RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMG-  329 (741)
Q Consensus       256 ~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-  329 (741)
                      ....     -+...++.++..+.+...++.+......+......+|..-+..-=.     +     .....-....+.. 
T Consensus       305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~-----~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----R-----REEPNALCEVGKEL  374 (895)
T ss_pred             HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----c-----cccccccccCCCCC
Confidence            7654     2334688888999999999999988888876434444433311000     0     0000000000000 


Q ss_pred             CCcchH-HHHHHHHHHhcCChHHHHHHHHhcC----CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 004632          330 PEYDYL-GPALIEFYAECGKMSECEKVIHAIG----ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVAS  404 (741)
Q Consensus       330 p~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  404 (741)
                      +.+..+ ...+.-...+.+...+++.-|-...    ..+...|..+..++.+.|++.+|+.+|..+.....--+...|..
T Consensus       375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~  454 (895)
T KOG2076|consen  375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK  454 (895)
T ss_pred             CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence            011111 2222222222333333333222211    12345577777888888888888888888877644445667777


Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc------------hHHHHHHH
Q 004632          405 SLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV------------VMWNSMIC  472 (741)
Q Consensus       405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~l~~  472 (741)
                      +..++...|..++|.+.|..++...|....+...|...+.+.|+.++|.+.+..+..+|.            ........
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d  534 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD  534 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence            777788888888888888888888888777888888888888888888888888765542            12233345


Q ss_pred             HHHhcCChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHhccccHHhHHHHHH------H
Q 004632          473 GFYQNGNSLEAINLFHQMYLNC----------------------LEMDEVTFLTAIQACSNIGQLEKGKWVHH------K  524 (741)
Q Consensus       473 ~~~~~g~~~~A~~~~~~m~~~~----------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~  524 (741)
                      .+.+.|+.++=+.+-..|...+                      .+....+...++.+-.+.++......-..      .
T Consensus       535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~  614 (895)
T KOG2076|consen  535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA  614 (895)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence            5666777666544444443211                      11112222223333333333222211111      1


Q ss_pred             HHHcCCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004632          525 LISYGVRKDI--YIDTALTDMYAKCGDLQTAQRVFDSMSER-----NV----VSWSAMIDCYGMHGQLNDAASLFKQMLD  593 (741)
Q Consensus       525 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~  593 (741)
                      -...|+..+.  ..+..++..+++.+++++|..+...+.+-     +.    ..-...+.+.+..+++..|...++.|..
T Consensus       615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~  694 (895)
T KOG2076|consen  615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT  694 (895)
T ss_pred             hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            1112222222  24456777889999999999999887742     22    1234456677889999999999999987


Q ss_pred             c-CC--CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 004632          594 S-GI--KPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGS  668 (741)
Q Consensus       594 ~-~~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~  668 (741)
                      . +.  .|.. ..|+..++...+.++-.--.+++..+......-++..+...+..+..++.+.-|+..+-++ ...|+.+
T Consensus       695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P  774 (895)
T KOG2076|consen  695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP  774 (895)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence            4 11  2322 2455455555665555544555555443222222333333445566788999999888777 3334433


Q ss_pred             HH-HHHHHHHH----------hcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          669 IW-GALLNGCR----------IHKRIDVMKTIEKELSVTGTN--DNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       669 ~~-~~l~~~~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .. ..++.++.          ++-..-++..++++..++.-.  ...+++.+|++|...|-.--|..+|++.+.-
T Consensus       775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~  849 (895)
T KOG2076|consen  775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV  849 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence            32 22222221          222345677778777776654  5678999999999999999999999998763

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=2.7e-18  Score=175.86  Aligned_cols=294  Identities=12%  Similarity=0.071  Sum_probs=165.2

Q ss_pred             CChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCC-------CcccHHHHHHHHHHcCCchHH
Q 004632          311 GWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGER-------NILSWNMLISEYARKGMSKEA  383 (741)
Q Consensus       311 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a  383 (741)
                      |+++.|...|..+.+.+  |++..++..++..+...|++++|..+++.+...       ....+..++..|.+.|++++|
T Consensus        49 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A  126 (389)
T PRK11788         49 EQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA  126 (389)
T ss_pred             CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            34444444444444332  333334444444444444444444444433221       113456666677777777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004632          384 LELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKS  463 (741)
Q Consensus       384 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  463 (741)
                      ..+|+++.+. .+++..++..+...+...|++++|.+.++.+.+.++.+....                          .
T Consensus       127 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------------~  179 (389)
T PRK11788        127 EELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------------I  179 (389)
T ss_pred             HHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------------H
Confidence            7777777654 223444555555555555666666555555554443221100                          0


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHH
Q 004632          464 VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDM  543 (741)
Q Consensus       464 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  543 (741)
                      ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~  258 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC  258 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence            0123334445555666666666666665432 223344555556666666666666666666554333333455666667


Q ss_pred             HHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHH
Q 004632          544 YAKCGDLQTAQRVFDSMS--ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSH---SGSVEE  618 (741)
Q Consensus       544 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~  618 (741)
                      |...|++++|...++++.  .|+...+..++..+.+.|++++|..+++++.+  ..|+..++..++..+..   .|+.++
T Consensus       259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~  336 (389)
T PRK11788        259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKE  336 (389)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchh
Confidence            777777777777777665  25555566677777777888888888877777  46777777766665543   447777


Q ss_pred             HHHHHHHHHHcCCCCCcc
Q 004632          619 GKFYFNAMRIFGVEPDLQ  636 (741)
Q Consensus       619 a~~~~~~~~~~~~~~~~~  636 (741)
                      +..+++++.+.++.|++.
T Consensus       337 a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        337 SLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            888888777766666554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.84  E-value=1.5e-16  Score=171.39  Aligned_cols=426  Identities=12%  Similarity=0.026  Sum_probs=234.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCC
Q 004632          236 SFIVMYSKCGDLLSAERTFVKIEK--RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEP-NLITLITVLGSCAGLGW  312 (741)
Q Consensus       236 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~  312 (741)
                      .....+.+.|++++|+..|++...  |+...|..+..++...|++++|++.++...+.  .| +...+..+..++...|+
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~  209 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK  209 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence            344555666666666666665443  44455666666677777777777777766654  23 33456666666777777


Q ss_pred             hhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHH
Q 004632          313 LREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQT  392 (741)
Q Consensus       313 ~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  392 (741)
                      +++|..-+..+....-  .+......++.-+........+...++.-+ .+...+..+.. +......+....-+....+
T Consensus       210 ~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       210 YADALLDLTASCIIDG--FRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence            7777666655443321  111111111111111111223333333222 22333333322 2222222222211211111


Q ss_pred             CCCCCCHH-HHHHHHHH---hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHH
Q 004632          393 WGLMPDSF-SVASSLSA---CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWN  468 (741)
Q Consensus       393 ~g~~p~~~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  468 (741)
                        ..|+.. .+..+...   ....+++++|.+.++.+++.+...                            ......++
T Consensus       286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~----------------------------~~~a~a~~  335 (615)
T TIGR00990       286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG----------------------------EKEAIALN  335 (615)
T ss_pred             --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC----------------------------hhhHHHHH
Confidence              111110 00000000   112234444444444444332100                            01223455


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 004632          469 SMICGFYQNGNSLEAINLFHQMYLNCLEMD-EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKC  547 (741)
Q Consensus       469 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  547 (741)
                      .+...+...|++++|+..|++....  .|+ ...|..+...+...|++++|...++.+.+..+ .+..++..+...+...
T Consensus       336 ~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~  412 (615)
T TIGR00990       336 LRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIK  412 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            5555566666666666666666553  233 44555566666666777777777766655432 2456666677777777


Q ss_pred             CCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 004632          548 GDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYF  623 (741)
Q Consensus       548 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  623 (741)
                      |++++|...|++..+  | +...+..+...+.+.|++++|+..|++..+  ..|+ ...+..+...+...|++++|+..|
T Consensus       413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~  490 (615)
T TIGR00990       413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKF  490 (615)
T ss_pred             CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            778777777777663  3 455667777788888888888888888887  4564 457777777888888888888888


Q ss_pred             HHHHHcCCCCCcc------HHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          624 NAMRIFGVEPDLQ------HYACMVDLLSRSGDIEGAFKMIHSM-PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       624 ~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      ++..+.....+..      .++.....+...|++++|.+++++. .. +.+...+..++..+...|++++|...++++.+
T Consensus       491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            8887743211111      1111222333468888888888886 33 33455677888888888888888888888888


Q ss_pred             cCCCCch
Q 004632          696 TGTNDNG  702 (741)
Q Consensus       696 ~~p~~~~  702 (741)
                      +.+....
T Consensus       571 l~~~~~e  577 (615)
T TIGR00990       571 LARTEGE  577 (615)
T ss_pred             HhccHHH
Confidence            8775443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.84  E-value=5.1e-17  Score=163.25  Aligned_cols=519  Identities=12%  Similarity=0.019  Sum_probs=283.2

Q ss_pred             HHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCCC----CccchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004632           15 RLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEP----DSFMWAVLIKCYMWNNFFEESILLYHKMIREQ   90 (741)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   90 (741)
                      ..|..+..+|+.||..||..||..||..|+++.|- +|.-|...    +...++.++.+..++++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            57888999999999999999999999999999999 88887642    3455777777777777665553          


Q ss_pred             CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHH-------hCC-----------------CCChhhhhHHHHHhHhcCCh
Q 004632           91 ATISNFIYPSVLRACSSLGDLGSGEKVHGRIIK-------CGF-----------------DKDDVIQTSILCTYGEFGCL  146 (741)
Q Consensus        91 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~-----------------~~~~~~~~~l~~~~~~~g~~  146 (741)
                       .|.+.||..|+.+|+..||+.....+-+.|..       +|+                 -||..   ..+....-.|-+
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglw  155 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLW  155 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHH
Confidence             56777888888888888776553333322221       121                 11111   111122223333


Q ss_pred             hHHHHHHccCC---------------------------------C-CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 004632          147 DDARKVFDKMT---------------------------------S-RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGV  192 (741)
Q Consensus       147 ~~a~~~~~~~~---------------------------------~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  192 (741)
                      +.+++++..++                                 + ++..+|..++..-.-+|+.+.|..++..|.+.|+
T Consensus       156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            44433332222                                 2 6777888888888889999999999999999999


Q ss_pred             CCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHH
Q 004632          193 EPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCY  272 (741)
Q Consensus       193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  272 (741)
                      +.+..-|-.++-+   .++...+..++..|...|+.|+..|+...+..+..+|....+....+.-.--....+..+.++.
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~  312 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL  312 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence            9888877777655   7888888889999999999999999888777777765533322211110001111233333331


Q ss_pred             HhcCC-----hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCC--CCCcchHHHHHHHHHHh
Q 004632          273 NRSGW-----FQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGM--GPEYDYLGPALIEFYAE  345 (741)
Q Consensus       273 ~~~~~-----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~~l~~~~~~  345 (741)
                      ..+..     ..-.+..+.+..-.|+......|...++. ...|.-+...++...+..--.  .+.+...+..++.-|.+
T Consensus       313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr  391 (1088)
T KOG4318|consen  313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR  391 (1088)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence            11111     12222223333233444333444333332 225666666666666543222  12223333333333333


Q ss_pred             cCChHHHHHHHH--hcCCC--CcccHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCC-------CHHHHHHHHHHhh
Q 004632          346 CGKMSECEKVIH--AIGER--NILSWNMLISEYARKGMSKEALELLVQMQTW----GLMP-------DSFSVASSLSACG  410 (741)
Q Consensus       346 ~~~~~~A~~~~~--~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-------~~~~~~~ll~~~~  410 (741)
                      .-+-.....++.  +....  +...-..+.... ..-+...++.-+..+...    .+.|       -...-..++..|.
T Consensus       392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell-~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~  470 (1088)
T KOG4318|consen  392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELL-ENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN  470 (1088)
T ss_pred             HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHH-HHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence            221111111110  00000  000000011111 111112222211111110    0011       1111222333333


Q ss_pred             ccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc------hHHHHHHHHHHhcCChHHHH
Q 004632          411 NVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV------VMWNSMICGFYQNGNSLEAI  484 (741)
Q Consensus       411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~  484 (741)
                      +.-+..++...-+.....-  ....|..++..+......+.|..+.+++..++.      ..+..+.+...+.+....+.
T Consensus       471 se~n~lK~l~~~ekye~~l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~  548 (1088)
T KOG4318|consen  471 SEYNKLKILCDEEKYEDLL--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS  548 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence            3333333332222111111  113678888888888888888888888876643      45677778888888888888


Q ss_pred             HHHHHHHHCCCC-C-CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 004632          485 NLFHQMYLNCLE-M-DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDS  559 (741)
Q Consensus       485 ~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  559 (741)
                      .+++++.+.-.. | ...++-.++......|+.+...+.++.+...|+..+    ..++....+.++...|.++++.
T Consensus       549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~  621 (1088)
T KOG4318|consen  549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEP  621 (1088)
T ss_pred             HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchH
Confidence            888888763221 2 134455566666778888888888887777665542    2223334455555555555543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=3.7e-16  Score=144.25  Aligned_cols=449  Identities=11%  Similarity=0.056  Sum_probs=305.9

Q ss_pred             ccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhh--cCCChhhH-HHHHHHHHHhCCCCChhhhhHH
Q 004632           60 SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACS--SLGDLGSG-EKVHGRIIKCGFDKDDVIQTSI  136 (741)
Q Consensus        60 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l  136 (741)
                      +.+=|.|+.. ..+|...++.-+|++|...|++.+...-..|++.-+  ...++.-+ .+.|-.|.+.| +.+..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence            4456666664 557899999999999999998888876666654433  23333322 33444454444 3333333   


Q ss_pred             HHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHH
Q 004632          137 LCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPAR  216 (741)
Q Consensus       137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  216 (741)
                           +.|++.+   ++-+.......+|..||.|+|+-...+.|.+++++......+.+..+||.+|.+..    +...+
T Consensus       191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K  258 (625)
T KOG4422|consen  191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK  258 (625)
T ss_pred             -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence                 4566555   44444445677999999999999999999999999998888999999999998764    33448


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004632          217 SIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN  296 (741)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  296 (741)
                      ++..+|....++||..++|+++....+-|+++.|.                           ..|++++.+|++-|+.|.
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePs  311 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPS  311 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcc
Confidence            89999999999999999999999999999888876                           447788999999999999


Q ss_pred             hhhHHHHHHHhhccCChh-hHHHHHHHHHHh-------CCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC-------
Q 004632          297 LITLITVLGSCAGLGWLR-EGKSVHCQIIRK-------GMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE-------  361 (741)
Q Consensus       297 ~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------  361 (741)
                      ..+|..+|..+++.++.. .+..+..++...       .+.|.+..++...+.++.+..+.+-|.++-.-+..       
T Consensus       312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i  391 (625)
T KOG4422|consen  312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI  391 (625)
T ss_pred             hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence            999999999888877653 344555554432       23467778888888999899998888887665542       


Q ss_pred             -CC---cccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hH
Q 004632          362 -RN---ILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQ  436 (741)
Q Consensus       362 -~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~  436 (741)
                       ++   ..-|..+....++....+.-+..|+.|.-.-.-|++.+...++++....+.++..-+++...+..|..... +.
T Consensus       392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~  471 (625)
T KOG4422|consen  392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR  471 (625)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence             12   22366778888999999999999999998888899999999999999999999999999999888865444 33


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 004632          437 SSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQ--NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQ  514 (741)
Q Consensus       437 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  514 (741)
                      ..+...+++..-            .|+...-..+-....+  ..-.+.....-.+|.+.  .......+.++..+.+.|.
T Consensus       472 eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~  537 (625)
T KOG4422|consen  472 EEILMLLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGR  537 (625)
T ss_pred             HHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcch
Confidence            333333333320            1111100011000000  00011111122233333  2333445555556677777


Q ss_pred             HHhHHHHHHHHHHcC-CCCCchhHH---HHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 004632          515 LEKGKWVHHKLISYG-VRKDIYIDT---ALTDMYAKCGDLQTAQRVFDSMSERNVV  566 (741)
Q Consensus       515 ~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~  566 (741)
                      .++|.+++..+.+.+ -.|-....+   .+++...+...+..|..+++-+...|..
T Consensus       538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence            777777777664322 223333333   4555556667777777777766654433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=8.1e-16  Score=164.70  Aligned_cols=425  Identities=9%  Similarity=0.031  Sum_probs=257.0

Q ss_pred             HHHhcCCHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-hH--HHHHHHhhccCCh
Q 004632          240 MYSKCGDLLSAERTFVKIEKRCTT---SWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI-TL--ITVLGSCAGLGWL  313 (741)
Q Consensus       240 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~--~~ll~~~~~~~~~  313 (741)
                      ...+.|+++.|...|++..+.++.   ....++..+...|+.++|+..+++..    .|+.. .+  ..+...+...|++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence            345666666666666665542222   12255555566666666666666654    22111 11  2223344555666


Q ss_pred             hhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 004632          314 REGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTW  393 (741)
Q Consensus       314 ~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  393 (741)
                      +.|.++++++.+..  |.++.+...++..+...++.++|.+.++++...                               
T Consensus       119 d~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-------------------------------  165 (822)
T PRK14574        119 DQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER-------------------------------  165 (822)
T ss_pred             HHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-------------------------------
Confidence            66666666665554  444555445555555555555555555554432                               


Q ss_pred             CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC-CchHHHH---
Q 004632          394 GLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK-SVVMWNS---  469 (741)
Q Consensus       394 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---  469 (741)
                        .|+...+..+...+...++...|.+.++.+++..|.+..++..+.....+.|-...|.++..+-+.- +...+.-   
T Consensus       166 --dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~  243 (822)
T PRK14574        166 --DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER  243 (822)
T ss_pred             --CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence              2332232222222222333333444444444444444444444444445555444444444432210 0000000   


Q ss_pred             -HHHHHH---------hcCC---hHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccccHHhHHHHHHHHHHcCC
Q 004632          470 -MICGFY---------QNGN---SLEAINLFHQMYLN-CLEMDE-V----TFLTAIQACSNIGQLEKGKWVHHKLISYGV  530 (741)
Q Consensus       470 -l~~~~~---------~~g~---~~~A~~~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  530 (741)
                       .+.-.+         ...+   .+.|+.-++.+... +..|.. .    ...-.+.++...++..+++..++.+...+.
T Consensus       244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~  323 (822)
T PRK14574        244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY  323 (822)
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence             000000         1112   34455555655542 122322 1    222345567788899999999999988887


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----
Q 004632          531 RKDIYIDTALTDMYAKCGDLQTAQRVFDSMSER---------NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGI-----  596 (741)
Q Consensus       531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----  596 (741)
                      +....+-..+.++|...+++++|..++.++..+         +......|..++...+++++|..+++++.+...     
T Consensus       324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~  403 (822)
T PRK14574        324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV  403 (822)
T ss_pred             CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence            767778888999999999999999999987531         223356788889999999999999999987311     


Q ss_pred             ------CC--CHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCC
Q 004632          597 ------KP--NEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPA  665 (741)
Q Consensus       597 ------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~  665 (741)
                            .|  |-. .+..++..+...|+..+|++.++++.... +-|......+.+++...|++.+|.+.++.+  -.|.
T Consensus       404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~  482 (822)
T PRK14574        404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR  482 (822)
T ss_pred             cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence                  12  222 33445557888999999999999998754 557888889999999999999999999777  3445


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 004632          666 NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYY  704 (741)
Q Consensus       666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  704 (741)
                      +..+....+.+....+++.+|..+.+.+.+..|+++.+-
T Consensus       483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        483 SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            666777888888899999999999999999999988543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.83  E-value=1.6e-13  Score=133.98  Aligned_cols=472  Identities=11%  Similarity=0.071  Sum_probs=231.9

Q ss_pred             ccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 004632          208 ELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALES  284 (741)
Q Consensus       208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~  284 (741)
                      ...+.+.|..++....+-- +.+..    |..++.+..-++.|.++++...+   .+...|.+-..---.+|+.+....+
T Consensus       388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            3444455655555555432 11222    23334444556666666655433   3444555555444556666655555


Q ss_pred             HHH----HHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCc-chHHHHHHHHHHhcCChHHHHHHHHhc
Q 004632          285 FVK----MLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEY-DYLGPALIEFYAECGKMSECEKVIHAI  359 (741)
Q Consensus       285 ~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  359 (741)
                      +.+    +..+|+..+..-|..=...|-..|..-.+..+....+..|+...+ ...+..-...+.+.+.++-|+.+|...
T Consensus       463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a  542 (913)
T KOG0495|consen  463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA  542 (913)
T ss_pred             HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence            433    344566666666666666666666666666666666666654222 234444444455555555555555443


Q ss_pred             CC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhH
Q 004632          360 GE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQ  436 (741)
Q Consensus       360 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  436 (741)
                      .+   .+...|......--..|..++...+|++.                                   +..-+.....+
T Consensus       543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqka-----------------------------------v~~~pkae~lw  587 (913)
T KOG0495|consen  543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA-----------------------------------VEQCPKAEILW  587 (913)
T ss_pred             HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH-----------------------------------HHhCCcchhHH
Confidence            32   12333444444444444444444555544                                   44444444444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 004632          437 SSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG  513 (741)
Q Consensus       437 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  513 (741)
                      -..+..+-..|++..|..++....+.   +..+|-+-+..-..+..++.|..+|.+...  ..|+...|..-+....-.+
T Consensus       588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD  665 (913)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence            44444444444444444444433321   223444444444444455555555544433  2344444444444444444


Q ss_pred             cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004632          514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQ  590 (741)
Q Consensus       514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~  590 (741)
                      +.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+  | .+..|-.+...--+.|++-.|..++++
T Consensus       666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr  744 (913)
T KOG0495|consen  666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR  744 (913)
T ss_pred             hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence            555555555444432 222233444444555555555555555544332  2 233444444444455555555555555


Q ss_pred             HHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 004632          591 MLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSI  669 (741)
Q Consensus       591 ~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  669 (741)
                      ..-.  .| +...|...+..-.+.|+.+.|..+..++++. .+.+...|..-+...-+.++-..+...+++..  .|+.+
T Consensus       745 arlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphV  819 (913)
T KOG0495|consen  745 ARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHV  819 (913)
T ss_pred             HHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchh
Confidence            5542  23 3335555555555555555555555555542 22334444444444444445445555555443  33344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 004632          670 WGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM  727 (741)
Q Consensus       670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  727 (741)
                      +..+...+.....++.|.+.|.++...+|++..+|..+...+...|.-++-.+++.+-
T Consensus       820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4444445555555556666666666666655555555555555555555555555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.81  E-value=2.4e-15  Score=161.14  Aligned_cols=421  Identities=11%  Similarity=0.016  Sum_probs=311.5

Q ss_pred             HhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCccc-HHHH--HHHHHHcCCchH
Q 004632          306 SCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILS-WNML--ISEYARKGMSKE  382 (741)
Q Consensus       306 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~~~~~~  382 (741)
                      ...+.|+++.|...+.++.+..  |.++.....++.++...|+.++|+..+++...|+... +..+  ...+...|++++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            4468899999999999999876  5554333388888999999999999999988764443 3333  457888899999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004632          383 ALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK  462 (741)
Q Consensus       383 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  462 (741)
                      |+++|+++.+.. +-+...+..++..+...++.++|++.++.+.+..+.... +..++..+...++..+|...++++.+.
T Consensus       121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            999999999862 233556666677788999999999999999988877333 355555555567776699999988753


Q ss_pred             ---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----hccccH---HhHHHHHHHH
Q 004632          463 ---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT------FLTAIQAC-----SNIGQL---EKGKWVHHKL  525 (741)
Q Consensus       463 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~  525 (741)
                         +...+..++.+..+.|-...|+++.++-... ..+...-      ....++.-     ....++   +.|..-++.+
T Consensus       199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l  277 (822)
T PRK14574        199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL  277 (822)
T ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence               4567788888999999999999877653211 1111111      11111110     112233   3344445554


Q ss_pred             HH-cCCCCCc-hh-HH---HHHHHHHhcCCHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004632          526 IS-YGVRKDI-YI-DT---ALTDMYAKCGDLQTAQRVFDSMSERN----VVSWSAMIDCYGMHGQLNDAASLFKQMLDSG  595 (741)
Q Consensus       526 ~~-~~~~~~~-~~-~~---~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  595 (741)
                      .. .+..|.. .. ..   -.+-++...|++.++++.++.+..+.    ..+-..+..+|...+++++|+.+|+++....
T Consensus       278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~  357 (822)
T PRK14574        278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD  357 (822)
T ss_pred             HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence            43 2222322 11 12   34456788999999999999998422    2356678899999999999999999997642


Q ss_pred             C-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----------CCC---ccHHHHHHHHHHhcCChHHHHH
Q 004632          596 I-----KPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGV-----------EPD---LQHYACMVDLLSRSGDIEGAFK  656 (741)
Q Consensus       596 ~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~  656 (741)
                      .     .++......|..+|...+++++|..+++.+.+...           .|+   ...+..++..+.-.|+..+|.+
T Consensus       358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~  437 (822)
T PRK14574        358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK  437 (822)
T ss_pred             ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence            1     12333456788899999999999999999988321           122   2234456778889999999999


Q ss_pred             HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          657 MIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       657 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      .++++  ..|-|...+..+...+...|.+.+|+..++.+..++|++..+...++.++...|++.+|....+.+...-
T Consensus       438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            99999  4667899999999999999999999999999999999999999999999999999999999988776643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.78  E-value=2.6e-12  Score=125.69  Aligned_cols=603  Identities=14%  Similarity=0.108  Sum_probs=382.9

Q ss_pred             CChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHH
Q 004632           43 GSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHG  119 (741)
Q Consensus        43 g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  119 (741)
                      +++..|+.+++...+  | +...|..-.+.--..|.+..|..+..+=.+.- +-+...+...+    +....+.|..+..
T Consensus       265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~vvA  339 (913)
T KOG0495|consen  265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTVVA  339 (913)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHHHH
Confidence            466777777777765  2 34456655555566666666665554433221 22222332222    2233444444444


Q ss_pred             HHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC--C-CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh
Q 004632          120 RIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS--R-DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDF  196 (741)
Q Consensus       120 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  196 (741)
                      ...+.- +-++..|-.....   -.+...-.+++.+..+  | ++..|...    +.-.+.+.|..++....+- ++.. 
T Consensus       340 ~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s-  409 (913)
T KOG0495|consen  340 NAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQS-  409 (913)
T ss_pred             HHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccch-
Confidence            444332 2222222211111   1111112223332221  2 22233222    2334444466666555542 1111 


Q ss_pred             hhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC--------CCcchHHHH
Q 004632          197 VTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK--------RCTTSWTAM  268 (741)
Q Consensus       197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l  268 (741)
                         .-|.-++++..-++.|+.++....+. ++-+..+|.+-...--.+|+.+...++..+-..        -+...|-.=
T Consensus       410 ---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e  485 (913)
T KOG0495|consen  410 ---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE  485 (913)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence               12334455555566666666655443 344555665555555666666666666554221        112234444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhc
Q 004632          269 ISCYNRSGWFQKALESFVKMLEVKEEP--NLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAEC  346 (741)
Q Consensus       269 i~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~  346 (741)
                      ...+-..|..-.+..+....+.-|+.-  -..||..-.+.|.+.+.++-+..+|...++..  |.+..+|...+..--..
T Consensus       486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~h  563 (913)
T KOG0495|consen  486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSH  563 (913)
T ss_pred             HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhc
Confidence            445555566666666666666655543  33588888899999999999999999988865  78889999998888889


Q ss_pred             CChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 004632          347 GKMSECEKVIHAIGER---NILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHG  423 (741)
Q Consensus       347 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  423 (741)
                      |..+.-..+|++....   ....|-.....+-..|+...|..++....+.                              
T Consensus       564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~------------------------------  613 (913)
T KOG0495|consen  564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA------------------------------  613 (913)
T ss_pred             CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh------------------------------
Confidence            9999999888886532   2334555555555666666666666666553                              


Q ss_pred             HHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004632          424 HVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ--KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT  501 (741)
Q Consensus       424 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~  501 (741)
                           .+.+..++...+.......+++.|..+|.+...  ++...|..-+..--..++.++|++++++.++. .+.-...
T Consensus       614 -----~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl  687 (913)
T KOG0495|consen  614 -----NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKL  687 (913)
T ss_pred             -----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHH
Confidence                 333223444455555555666666666655443  34556655555555678888888888887764 3333556


Q ss_pred             HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhc
Q 004632          502 FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS--ER-NVVSWSAMIDCYGMH  578 (741)
Q Consensus       502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~  578 (741)
                      |..+.+.+-+.++.+.|...|..=.+. ++..+..|-.+...-.+.|.+-.|+.++++..  .| |...|-..|+.-.+.
T Consensus       688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~  766 (913)
T KOG0495|consen  688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRA  766 (913)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence            777777778888888888777655443 34567788888888889999999999999876  34 678999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHH
Q 004632          579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI  658 (741)
Q Consensus       579 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  658 (741)
                      |+.+.|..++.++++. ++.+...|..-|...-+.++-......+++     ...|+...-.+...+....++++|.+.|
T Consensus       767 gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf  840 (913)
T KOG0495|consen  767 GNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWF  840 (913)
T ss_pred             CCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999884 333445777777766666664444443332     3457778888999999999999999999


Q ss_pred             HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 004632          659 HSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSN  709 (741)
Q Consensus       659 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  709 (741)
                      .+.  ..+...++|..+......+|.-++-.+++.+.....|.....|.....
T Consensus       841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK  893 (913)
T KOG0495|consen  841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK  893 (913)
T ss_pred             HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence            998  456678899999999999999999999999999999998888877653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.2e-15  Score=141.80  Aligned_cols=469  Identities=12%  Similarity=0.069  Sum_probs=294.2

Q ss_pred             cccCChhhHHHHHHHHHHhcCCCchHHH-HHHHHHHHhcCCHHHHHHHHhccCC--CC------cchHHHHHHHHHhcCC
Q 004632          207 GELCSLRPARSIHGHVLRRKIKIDGPLG-NSFIVMYSKCGDLLSAERTFVKIEK--RC------TTSWTAMISCYNRSGW  277 (741)
Q Consensus       207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~  277 (741)
                      .......+|...|+.+++...-|+.... ..+.+.+.+...+.+|+++++....  |+      +...+.+.-.+.+.|+
T Consensus       212 ~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gq  291 (840)
T KOG2003|consen  212 EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQ  291 (840)
T ss_pred             hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEeccc
Confidence            3344455666666666666555544332 2344566677777777777655432  21      2244555556677888


Q ss_pred             hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHH
Q 004632          278 FQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIH  357 (741)
Q Consensus       278 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  357 (741)
                      ++.|+..|+...+.  .|+..+-..++-++...|+.+...+.|..++.....|++...        .+..+         
T Consensus       292 y~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky--------i~~~d---------  352 (840)
T KOG2003|consen  292 YDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY--------IKEKD---------  352 (840)
T ss_pred             chhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc--------cCCcC---------
Confidence            88888888777664  577776666666666677777777777777766544433211        00000         


Q ss_pred             hcCCCCcccHHH-----HHHHHHHcC--CchHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHhc
Q 004632          358 AIGERNILSWNM-----LISEYARKG--MSKEALELLVQMQTWGLMPDSFS-VASSLSACGNVGSLQLGLQIHGHVIKID  429 (741)
Q Consensus       358 ~~~~~~~~~~~~-----li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~  429 (741)
                         .|+....+-     .+...-+..  +.++++-.--++..--+.||-.. +.+.+..+..+...+.|..+        
T Consensus       353 ---dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--------  421 (840)
T KOG2003|consen  353 ---DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--------  421 (840)
T ss_pred             ---CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh--------
Confidence               111111111     111121111  12233333233332223333211 11222221111112222111        


Q ss_pred             CCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHH-----HHHh-cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004632          430 CKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMIC-----GFYQ-NGNSLEAINLFHQMYLNCLEMDEVTFL  503 (741)
Q Consensus       430 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~-----~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~  503 (741)
                            --.-..-+.+.|+++.|.+++.-..+.|..+-++...     -|.+ -.++..|.+.-+..... -.-+.....
T Consensus       422 ------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~  494 (840)
T KOG2003|consen  422 ------EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALT  494 (840)
T ss_pred             ------hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhh
Confidence                  1223345667788888888877776665443322221     1222 23455555555444322 122333333


Q ss_pred             HHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCC
Q 004632          504 TAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS---ERNVVSWSAMIDCYGMHGQ  580 (741)
Q Consensus       504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~  580 (741)
                      .-.......|++++|.+.+++....+-......|+. .-.+...|++++|+..|-++.   ..+......+...|-...+
T Consensus       495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led  573 (840)
T KOG2003|consen  495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED  573 (840)
T ss_pred             cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence            333334557889999999988876544433333433 234677899999999998876   3677788888889999999


Q ss_pred             HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHH
Q 004632          581 LNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH  659 (741)
Q Consensus       581 ~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  659 (741)
                      ..+|++++-+...  +.|+ +....-|...|-+.|+...|.+++-+-.+ -++-+..+..+|...|....-+++|+.+|+
T Consensus       574 ~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~e  650 (840)
T KOG2003|consen  574 PAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFE  650 (840)
T ss_pred             HHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999988877  6675 55777888899999999999888765544 356679999999999999999999999999


Q ss_pred             hC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 004632          660 SM-PFPANGSIWGALLNGC-RIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN  716 (741)
Q Consensus       660 ~~-~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  716 (741)
                      +. -..|+..-|..++..| ++.|++++|...|+.+....|++...+..|.+++-..|-
T Consensus       651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            99 5789999999888776 679999999999999999999999999999999888774

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.77  E-value=1e-14  Score=147.01  Aligned_cols=553  Identities=12%  Similarity=0.037  Sum_probs=264.5

Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCC
Q 004632           81 LLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRD  160 (741)
Q Consensus        81 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  160 (741)
                      .++..+...|+.|+..||..+|..||..|+.+.|- +|.-|.-...+....+++.++.+....++.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            45556666677777777777777777777777666 6666666666666666677776666666665554       566


Q ss_pred             ceeHHHHHHHHHhCCChhH---HHHHHHHhH----HCCCCCChhhHHHHHHHhcccCChhhH---------HHHHHHHHH
Q 004632          161 VVSWSSIIASYFDNADVSE---GLKMFHSMV----REGVEPDFVTMLSLAEACGELCSLRPA---------RSIHGHVLR  224 (741)
Q Consensus       161 ~~~~~~li~~~~~~g~~~~---a~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a---------~~~~~~~~~  224 (741)
                      ..+|..|..+|.+.||...   +.+.++...    ..|+.....-+-..+..+.  +-...+         +.+++..++
T Consensus        83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllk  160 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLK  160 (1088)
T ss_pred             hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHH
Confidence            6677777777777766533   222122111    1122111111111111111  111111         122333333


Q ss_pred             hcCCCchHHHHH----HHHHHH-hcCCHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 004632          225 RKIKIDGPLGNS----FIVMYS-KCGDLLSAERTFVKIEK-RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI  298 (741)
Q Consensus       225 ~~~~~~~~~~~~----li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  298 (741)
                      .+.......++.    +++-.. -...+++-......... +++.+|..++..-.-+|+.+.|..++.+|++.|.+.+..
T Consensus       161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H  240 (1088)
T KOG4318|consen  161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH  240 (1088)
T ss_pred             HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence            331111111110    111111 11223333333333333 677778888888888888888888888888888877777


Q ss_pred             hHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcC
Q 004632          299 TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKG  378 (741)
Q Consensus       299 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~  378 (741)
                      -|-.++-+   .++...+..+...|...|+.|++......++-.+. +|....+.+.    . +....+.+-..+-.-.|
T Consensus       241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~-N~~t~~~~e~----s-q~~hg~tAavrsaa~rg  311 (1088)
T KOG4318|consen  241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS-NGQTKYGEEG----S-QLAHGFTAAVRSAACRG  311 (1088)
T ss_pred             cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc-chhhhhcccc----c-chhhhhhHHHHHHHhcc
Confidence            76666654   67777777888888888888665555444444433 3331111111    1 11111222222222222


Q ss_pred             ----------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCc---ch-hHHHHHHHHH
Q 004632          379 ----------MSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKD---EF-VQSSLIDMYS  444 (741)
Q Consensus       379 ----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~-~~~~l~~~~~  444 (741)
                                ...-....+.+..-.|+......|. ...-....|.-+..+++-..+.......   .. .+..++.-|.
T Consensus       312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF  390 (1088)
T KOG4318|consen  312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF  390 (1088)
T ss_pred             cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence                      1111222222222223333332222 2222233566666666555544322211   11 3333333333


Q ss_pred             hcCCHHHHHHHHH--hccCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-------CHHHHHHHHHHH
Q 004632          445 KCGFKNLAYLLFE--RIQQK--SVVMWNSMICGFYQNGNSLEAINLFHQMYL----NCLEM-------DEVTFLTAIQAC  509 (741)
Q Consensus       445 ~~~~~~~a~~~~~--~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~~-------~~~~~~~ll~~~  509 (741)
                      +.-+.-....++.  +..+.  +....-.+.. +...-+...+++-+..+..    +...|       =...-+.++..|
T Consensus       391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vse-ll~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l  469 (1088)
T KOG4318|consen  391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSE-LLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL  469 (1088)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHH-HHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence            2211111111111  00000  0000000000 0000011111111111100    00011       111233445555


Q ss_pred             hccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHH
Q 004632          510 SNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNV------VSWSAMIDCYGMHGQLND  583 (741)
Q Consensus       510 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~  583 (741)
                      ++.-+..++...-+.....-+.   ..|..+++.+....+.+.|..+.+++..++.      .-+..+.+.+.+.+...+
T Consensus       470 ~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d  546 (1088)
T KOG4318|consen  470 NSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD  546 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence            5555555555444433332222   5677888888888888888888888776543      346677777778888888


Q ss_pred             HHHHHHHHHHcC-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          584 AASLFKQMLDSG-IKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       584 A~~~~~~~~~~~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      +..+++++.+.- ..|+. .++-.++......|+.+...++++-+...|+..+    ..++....+.++...|.++.+..
T Consensus       547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~  622 (1088)
T KOG4318|consen  547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE  622 (1088)
T ss_pred             HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence            888888877631 12222 3555566666777888877777777766555432    22233334455555555544433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=8e-14  Score=129.11  Aligned_cols=436  Identities=13%  Similarity=0.073  Sum_probs=293.0

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccC--ChhhH-HHHHHHHHHhcCCCchHHHHHHH
Q 004632          162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELC--SLRPA-RSIHGHVLRRKIKIDGPLGNSFI  238 (741)
Q Consensus       162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~li  238 (741)
                      .+-|.|+. ....|.++.+.-+|+.|.+.|++.....-..|++..+-.+  ++--+ .+-|-.|.+.|-... .+     
T Consensus       117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~-~s-----  189 (625)
T KOG4422|consen  117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST-SS-----  189 (625)
T ss_pred             cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc-cc-----
Confidence            35555555 3567888889999999999888777665555555443222  22211 223333334443222 11     


Q ss_pred             HHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632          239 VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS  318 (741)
Q Consensus       239 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  318 (741)
                         .+.|++.+   ++-+...++..++..+|.++|+-...+.|.+++++..+...+.+..+||.+|.+-.-.    ...+
T Consensus       190 ---WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~  259 (625)
T KOG4422|consen  190 ---WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK  259 (625)
T ss_pred             ---cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence               24455444   4445555667789999999999999999999999999988899999999999875433    2377


Q ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchH----HHHHHHHHHHCC
Q 004632          319 VHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKE----ALELLVQMQTWG  394 (741)
Q Consensus       319 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g  394 (741)
                      ++.+|....+.|                                |..++|+++.+..+.|+++.    |++++.+|++-|
T Consensus       260 Lv~EMisqkm~P--------------------------------nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG  307 (625)
T KOG4422|consen  260 LVAEMISQKMTP--------------------------------NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG  307 (625)
T ss_pred             HHHHHHHhhcCC--------------------------------chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Confidence            888888888776                                89999999999999998764    578899999999


Q ss_pred             CCCCHHHHHHHHHHhhccCChHH-HHHHHHHHHHh---------cCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC--
Q 004632          395 LMPDSFSVASSLSACGNVGSLQL-GLQIHGHVIKI---------DCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK--  462 (741)
Q Consensus       395 ~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--  462 (741)
                      +.|...+|..++..+.+.++..+ +..++.++...         .+.++..+...+..|.+..+.+.|..+..-+...  
T Consensus       308 VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N  387 (625)
T KOG4422|consen  308 VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN  387 (625)
T ss_pred             CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc
Confidence            99999999999998887777643 45555554432         2223337778888888888888888876655432  


Q ss_pred             ---------CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCC
Q 004632          463 ---------SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKD  533 (741)
Q Consensus       463 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  533 (741)
                               ...-|..+....++....+.-...|+.|.-.-+-|+..+...++++....+.++-.-++|..++..|....
T Consensus       388 ~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r  467 (625)
T KOG4422|consen  388 WKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR  467 (625)
T ss_pred             hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence                     11335566777788888899999999998888889999999999999999999999999999988775544


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004632          534 IYIDTALTDMYAKCGDLQTAQRVFDSMSERNVV---SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWAC  610 (741)
Q Consensus       534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  610 (741)
                      ...-..+...+++..            ..|+..   -+.....-++ ..-.+.....-.++.+..+.|  ...+.++-.+
T Consensus       468 ~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll  532 (625)
T KOG4422|consen  468 SDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILL  532 (625)
T ss_pred             HHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHH
Confidence            333333332222221            012211   1222211111 111222233344555544443  3445555567


Q ss_pred             hccCCHHHHHHHHHHHHHcC-CCCCccHHH---HHHHHHHhcCChHHHHHHHHhC
Q 004632          611 SHSGSVEEGKFYFNAMRIFG-VEPDLQHYA---CMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       611 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      .+.|+.++|.+++..+.+.+ -.|-....+   -+++.-.+.++...|+.+++-+
T Consensus       533 ~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  533 LRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            78899999999999886633 233344455   4455556777888888888877

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.3e-13  Score=130.16  Aligned_cols=216  Identities=11%  Similarity=0.088  Sum_probs=174.3

Q ss_pred             hccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHH
Q 004632          510 SNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAAS  586 (741)
Q Consensus       510 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~  586 (741)
                      .-.|+.-.+..-|+..++....++. .|-.+..+|....+.++....|++...   .|+.+|..-.+.+.-.+++++|..
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            3467777888888888877655433 255566678888899999999988773   466778887888888899999999


Q ss_pred             HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 004632          587 LFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFP  664 (741)
Q Consensus       587 ~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~  664 (741)
                      =|++.+.  +.|+. ..|..+.-+..+.++++++...|++.++. ++-.++.|+....++...+++++|.+.|+.. ...
T Consensus       416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            9999999  78855 47888888888899999999999999874 5666889999999999999999999999987 333


Q ss_pred             CC-------HH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          665 AN-------GS-IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       665 ~~-------~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      |.       +. ....-+-.+...+++..|..+++++.+++|....++..|+.+-.+.|+.++|+++|++...
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33       22 2222233345669999999999999999999999999999999999999999999998643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=5.4e-12  Score=118.75  Aligned_cols=455  Identities=10%  Similarity=0.079  Sum_probs=339.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 004632          231 GPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL-ITLITVLGS  306 (741)
Q Consensus       231 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~  306 (741)
                      ...|....+--..++++..|..+|++...   +++..|--.+..-+++.....|..++++....  -|.+ ..|-..+..
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence            33444444445567788899999998776   45667888888889999999999999988764  3332 234444444


Q ss_pred             hhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcccHHHHHHHHHHcCCchHHH
Q 004632          307 CAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG--ERNILSWNMLISEYARKGMSKEAL  384 (741)
Q Consensus       307 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~  384 (741)
                      --..|++..|.++|+.-.+..   ++...+...+..-.+-+.++.|..++++..  .|++.+|-.....-.+.|+...+.
T Consensus       151 EE~LgNi~gaRqiferW~~w~---P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR  227 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWMEWE---PDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR  227 (677)
T ss_pred             HHHhcccHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence            556799999999999988775   788899999999999999999999999864  689999999999999999999999


Q ss_pred             HHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch--hHHHHHHHHHhcCCHHHHHHHH---
Q 004632          385 ELLVQMQTWGLMPD---SFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF--VQSSLIDMYSKCGFKNLAYLLF---  456 (741)
Q Consensus       385 ~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~---  456 (741)
                      .+|....+. +..|   ...+.+....-.....++.|.-+|+-++..-|....  ++..+...--+-|+.....+..   
T Consensus       228 ~VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K  306 (677)
T KOG1915|consen  228 SVYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK  306 (677)
T ss_pred             HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence            999998764 1111   222333333344677889999999999998887754  7777776666667665554432   


Q ss_pred             -----HhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHH---HHHHhccccHHhH
Q 004632          457 -----ERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEV-------TFLTA---IQACSNIGQLEKG  518 (741)
Q Consensus       457 -----~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~l---l~~~~~~~~~~~a  518 (741)
                           +.+...|+   .+|-..+..--..|+.+...++|+..+.. ++|-..       .|.-+   +-.-....+.+.+
T Consensus       307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert  385 (677)
T KOG1915|consen  307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT  385 (677)
T ss_pred             hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                 33344444   45555666667789999999999999876 555221       22211   1222457889999


Q ss_pred             HHHHHHHHHcCCCCCchhHHHHHHHHH----hcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004632          519 KWVHHKLISYGVRKDIYIDTALTDMYA----KCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQML  592 (741)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  592 (741)
                      .++++...+. ++....+|.-+--+|+    ++.++..|.+++.....  |...+|...|..-.+.++++.+..+|++.+
T Consensus       386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999883 5566777776555554    57899999999998874  888899999999999999999999999999


Q ss_pred             HcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 004632          593 DSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIF-GVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSI  669 (741)
Q Consensus       593 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~  669 (741)
                      +  ..| |..+|......-...|+.+.|..+|.-+++. .+......+...++.=...|.++.|..+++++ ...+...+
T Consensus       465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv  542 (677)
T KOG1915|consen  465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV  542 (677)
T ss_pred             h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence            9  677 5568888888778889999999999999883 33344556777777777899999999999998 44555667


Q ss_pred             HHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc
Q 004632          670 WGALLNGCR-----IHK-----------RIDVMKTIEKELSV  695 (741)
Q Consensus       670 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~  695 (741)
                      |......-.     +.+           ....|..+|+++..
T Consensus       543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            766665433     334           56678888888764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=1.6e-14  Score=134.47  Aligned_cols=423  Identities=12%  Similarity=0.086  Sum_probs=295.4

Q ss_pred             HHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC--CC------cccHHHHHHH
Q 004632          302 TVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE--RN------ILSWNMLISE  373 (741)
Q Consensus       302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~li~~  373 (741)
                      .+.+.|.......+|+..++-+++..+.|+...+...+..++.+...+.+|++.++-...  |+      +...+.+.-.
T Consensus       206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt  285 (840)
T KOG2003|consen  206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT  285 (840)
T ss_pred             HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence            334455555667788888888888888877777777888888888889999888875432  21      2234555556


Q ss_pred             HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC-------------cchhHHH--
Q 004632          374 YARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-------------DEFVQSS--  438 (741)
Q Consensus       374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~--  438 (741)
                      +.+.|.++.|+..|+...+.  .|+..+-..++-++...|+.++..+.|..++.....             ++.+.+.  
T Consensus       286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai  363 (840)
T KOG2003|consen  286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI  363 (840)
T ss_pred             EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence            78899999999999998774  688888778888888889999999999888754211             1111111  


Q ss_pred             ---HHHHHHhcC--CHHHHHHHHHhcc----CCCc-------------hHHHH--------HHHHHHhcCChHHHHHHHH
Q 004632          439 ---LIDMYSKCG--FKNLAYLLFERIQ----QKSV-------------VMWNS--------MICGFYQNGNSLEAINLFH  488 (741)
Q Consensus       439 ---l~~~~~~~~--~~~~a~~~~~~~~----~~~~-------------~~~~~--------l~~~~~~~g~~~~A~~~~~  488 (741)
                         .+.-+.+.+  +.+.++-.-.++.    .++-             ..+..        -...|.++|+++.|+++++
T Consensus       364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk  443 (840)
T KOG2003|consen  364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK  443 (840)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence               122222222  1222222112222    2211             00111        1235788999999999999


Q ss_pred             HHHHCCCCCCHHHHHH--HHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 004632          489 QMYLNCLEMDEVTFLT--AIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVV  566 (741)
Q Consensus       489 ~m~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  566 (741)
                      -+.+...+.-...-+.  .+..+....++..|.++-+.....+ .-++.....-.+.....|++++|.+.+++....|..
T Consensus       444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas  522 (840)
T KOG2003|consen  444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS  522 (840)
T ss_pred             HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence            8876644333322222  2333333456777777766654322 111111111122234568999999999999988776


Q ss_pred             HHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 004632          567 SWSAMID---CYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVD  643 (741)
Q Consensus       567 ~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  643 (741)
                      +-.+|..   .+-..|+.++|+..|-++..- +..+......+...|....+...|++++-+.... ++.|+.++..|.+
T Consensus       523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d  600 (840)
T KOG2003|consen  523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD  600 (840)
T ss_pred             HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence            5555443   466789999999999988763 2335567778888999999999999999877653 4556889999999


Q ss_pred             HHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH
Q 004632          644 LLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFG  721 (741)
Q Consensus       644 ~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  721 (741)
                      .|-+.|+-.+|++..-.- . +|-+..+...|...|....-+++++.+++++.-+.|+...+...++.++.+.|++.+|.
T Consensus       601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~  680 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF  680 (840)
T ss_pred             HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence            999999999999987655 3 66788899999888888888999999999999999998888888899999999999999


Q ss_pred             HHHHHHHh
Q 004632          722 KVRSIMEV  729 (741)
Q Consensus       722 ~~~~~~~~  729 (741)
                      ++|+..-+
T Consensus       681 d~yk~~hr  688 (840)
T KOG2003|consen  681 DLYKDIHR  688 (840)
T ss_pred             HHHHHHHH
Confidence            99997644

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=7.1e-12  Score=117.96  Aligned_cols=455  Identities=11%  Similarity=0.089  Sum_probs=348.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Q 004632          265 WTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYA  344 (741)
Q Consensus       265 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~  344 (741)
                      |--...--..++++..|..+|++..+.. ..+...|..-+..-.+...+..|..+++..+..-  |.-..++-..+.+--
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHH
Confidence            4444444455677889999999998765 4566677777777788899999999999988754  677788888888888


Q ss_pred             hcCChHHHHHHHHhcC--CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 004632          345 ECGKMSECEKVIHAIG--ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIH  422 (741)
Q Consensus       345 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  422 (741)
                      ..|++..|..+|++..  +|+...|++.|+.-.+.+.++.|..++++.+-  +.|+..+|......-.+.|++..+..+|
T Consensus       153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            8999999999999976  69999999999999999999999999999986  5799999999888889999999999999


Q ss_pred             HHHHHhcCCcch---hHHHHHHHHHhcCCHHHHHHHHHhccCC-----CchHHHHHHHHHHhcCChHHHHHH--------
Q 004632          423 GHVIKIDCKDEF---VQSSLIDMYSKCGFKNLAYLLFERIQQK-----SVVMWNSMICGFYQNGNSLEAINL--------  486 (741)
Q Consensus       423 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~--------  486 (741)
                      ..+++.--++..   ++.+.+..-.++..++.|..+|+-....     ....|..+...=.+-|+.....+.        
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q  310 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ  310 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence            998875443332   7777777778889999999998755432     123454444444455665444333        


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCch------hHHHHHHHH---HhcCCHHHHHHHH
Q 004632          487 FHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIY------IDTALTDMY---AKCGDLQTAQRVF  557 (741)
Q Consensus       487 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~g~~~~A~~~~  557 (741)
                      |+.+.+. .+.|-.+|--.+..-...|+.+...++++.++..-++....      +|..+=-++   ....+.+.+.+++
T Consensus       311 YE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy  389 (677)
T KOG1915|consen  311 YEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY  389 (677)
T ss_pred             HHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            2333333 35677788888888888999999999999998764332211      121111111   2467899999999


Q ss_pred             HhcCC--C-CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 004632          558 DSMSE--R-NVV----SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFG  630 (741)
Q Consensus       558 ~~~~~--~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  630 (741)
                      +...+  | ...    .|-....-..++.+...|.+++-.++.  ..|...+|...+..-.+.++++.+..++++.++.+
T Consensus       390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~  467 (677)
T KOG1915|consen  390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS  467 (677)
T ss_pred             HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            88774  3 233    344445555678899999999998876  78999999999999899999999999999999965


Q ss_pred             CCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 004632          631 VEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN----GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTL  706 (741)
Q Consensus       631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  706 (741)
                       +-+..+|...+..=...|+.+.|..+|+-+-..|.    ...|..++..-...|.++.|..+|+++++..+... +|..
T Consensus       468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis  545 (677)
T KOG1915|consen  468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS  545 (677)
T ss_pred             -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence             34678888888888899999999999998844443    34677888888899999999999999999887765 6666


Q ss_pred             HHHHHh-----hcC-----------ChHHHHHHHHHHHh
Q 004632          707 LSNIYA-----EEG-----------NWDEFGKVRSIMEV  729 (741)
Q Consensus       707 l~~~~~-----~~g-----------~~~~A~~~~~~~~~  729 (741)
                      .+..-.     +.|           +...|..+|++...
T Consensus       546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            665444     344           56678888887654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.67  E-value=2.8e-16  Score=151.75  Aligned_cols=257  Identities=13%  Similarity=0.147  Sum_probs=113.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 004632          470 MICGFYQNGNSLEAINLFHQMYLNCLEMDEVT-FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCG  548 (741)
Q Consensus       470 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  548 (741)
                      +...+.+.|++++|++++++......+|+... +..+...+...++++.|...++.+.+.+.. ++..+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence            35556677788888887765444432343333 334444556678888888888888765543 55566666666 6888


Q ss_pred             CHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004632          549 DLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGI-KPNEVTFMNILWACSHSGSVEEGKFYFNA  625 (741)
Q Consensus       549 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  625 (741)
                      ++++|..++...-+  ++...+..++..+...++++++..+++++....- .++...|..+...+.+.|+.++|++.+++
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999888876643  5667778888889999999999999999876432 33556777788889999999999999999


Q ss_pred             HHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 004632          626 MRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY  703 (741)
Q Consensus       626 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  703 (741)
                      +++.. +-+......++..+...|+.+++.++++..  ..+.++..+..++.++...|++++|...++++.+.+|+|+.+
T Consensus       172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~  250 (280)
T PF13429_consen  172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW  250 (280)
T ss_dssp             HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence            99854 235778888999999999999988888877  235677788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          704 YTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       704 ~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ...++.++.+.|+.++|.++++++.+
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            99999999999999999999988754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.3e-12  Score=119.97  Aligned_cols=357  Identities=12%  Similarity=0.063  Sum_probs=196.8

Q ss_pred             CcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHH
Q 004632          331 EYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSV--ASSLSA  408 (741)
Q Consensus       331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~  408 (741)
                      .|....-...-++.+.|....|++.|......-+..|.+.+....-..+.+.+..    ... |...|..-.  ..+..+
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~a  236 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKKA  236 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHHH
Confidence            3444444455556677778888888877765555556555443332223222222    111 122111111  123344


Q ss_pred             hhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHH
Q 004632          409 CGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLF  487 (741)
Q Consensus       409 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  487 (741)
                      +......+++.+-.......|.+... .-+..+.+.-...++++|+..|+++.+.|+.-.                    
T Consensus       237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl--------------------  296 (559)
T KOG1155|consen  237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL--------------------  296 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc--------------------
Confidence            55566777777777777777776666 555555555666667777777776665543210                    


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C
Q 004632          488 HQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-N  564 (741)
Q Consensus       488 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~  564 (741)
                               -|..+|..++-.-.....    ..++.+-.-.--+--+.|...+.+-|+-.++.++|...|+...+  | .
T Consensus       297 ---------~dmdlySN~LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~  363 (559)
T KOG1155|consen  297 ---------DDMDLYSNVLYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY  363 (559)
T ss_pred             ---------hhHHHHhHHHHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch
Confidence                     012222222211111000    00000000000112234455555666666666666666666654  2 2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 004632          565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVD  643 (741)
Q Consensus       565 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  643 (741)
                      ...|+.+.+-|...++...|++-++++++  +.| |...|..|..+|...+.+.=|+-+|+++.... +.|...|.+|++
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~  440 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGE  440 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence            34566666667777777777777777776  555 44567777777777777777777777766632 335666777777


Q ss_pred             HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCchhHHHHHHHHhhc
Q 004632          644 LLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSV-------TGTNDNGYYTLLSNIYAEE  714 (741)
Q Consensus       644 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~  714 (741)
                      +|.+.++.++|++.|++.  ....+...+..++..+-+.++.++|...+++-++       .+|+-..+..-|+.-+.+.
T Consensus       441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~  520 (559)
T KOG1155|consen  441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM  520 (559)
T ss_pred             HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence            777777777777777766  2334556666677777777777777777666665       2333333344456666666


Q ss_pred             CChHHHHHHHHHHH
Q 004632          715 GNWDEFGKVRSIME  728 (741)
Q Consensus       715 g~~~~A~~~~~~~~  728 (741)
                      +++++|-.+..+..
T Consensus       521 ~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  521 KDFDEASYYATLVL  534 (559)
T ss_pred             cchHHHHHHHHHHh
Confidence            77766666554443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=9.8e-09  Score=105.94  Aligned_cols=679  Identities=12%  Similarity=0.070  Sum_probs=362.5

Q ss_pred             cchHHHHHHHHHHHHhCCCCC-hhhhHHHHHHHHccCChhhHHHhhccCCC---CCccchHHHHHHHHhcCChhHHHHHH
Q 004632            8 TNLRKLTRLHAHLLVTGLHYD-PPASTRLIESYAEMGSLRSSRLVFDTFKE---PDSFMWAVLIKCYMWNNFFEESILLY   83 (741)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~   83 (741)
                      ++++++.+    +..++..|- ...|-.-...+..+|++.+|-++-...++   .+..|-+.+=..=...|.+.--+.+|
T Consensus       342 qnpeLal~----~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYF  417 (1666)
T KOG0985|consen  342 QNPELALR----LAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYF  417 (1666)
T ss_pred             cChHHHHH----hhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHH
Confidence            45555554    444444454 44788888899999999999998887765   45555555555556667776777777


Q ss_pred             HHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHH-----HhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC
Q 004632           84 HKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRII-----KCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS  158 (741)
Q Consensus        84 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  158 (741)
                      ..+...| +.|..-=.-+.+.-..+|+.+-.+.++.+=.     +.|--..+.--..-++.|.+.+-...+...|.+..+
T Consensus       418 g~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gq  496 (1666)
T KOG0985|consen  418 GTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQ  496 (1666)
T ss_pred             HHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcc
Confidence            7777666 4444333334444445555544444433221     112100001011122333333333333333333221


Q ss_pred             -----------CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCC-CCChhhHHHHHHHhc----------------ccC
Q 004632          159 -----------RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGV-EPDFVTMLSLAEACG----------------ELC  210 (741)
Q Consensus       159 -----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~----------------~~~  210 (741)
                                 .-+--|-.+++.+.+ -+++.+.++...|.+... ..|.   ..+...+-                +..
T Consensus       497 f~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~di---e~I~DlFme~N~iQq~TSFLLdaLK~~  572 (1666)
T KOG0985|consen  497 FKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADI---EQIVDLFMELNLIQQCTSFLLDALKLN  572 (1666)
T ss_pred             hhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCCCcccH---HHHHHHHHHHHhhhhhHHHHHHHhcCC
Confidence                       011123344444444 455666666555554221 1111   11111111                111


Q ss_pred             ChhhH---HHHHHHHHHhcCC----------CchHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc-----hHHHHHH
Q 004632          211 SLRPA---RSIHGHVLRRKIK----------IDGPLGNSFIVMYSKCGDLLSAERTFVKIEK--RCTT-----SWTAMIS  270 (741)
Q Consensus       211 ~~~~a---~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~~~li~  270 (741)
                      .++.+   .++++.-...++.          .+..-+..+.+.|.+.|-...|.+.+..+..  +.++     .-.. +-
T Consensus       573 ~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEw-Lv  651 (1666)
T KOG0985|consen  573 SPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEW-LV  651 (1666)
T ss_pred             ChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHH-HH
Confidence            22211   1222222222111          1122256677888888998888888877643  1111     1111 23


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHH-----------hCCCCCcchHHHHH
Q 004632          271 CYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIR-----------KGMGPEYDYLGPAL  339 (741)
Q Consensus       271 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~~~~p~~~~~~~~l  339 (741)
                      .+...-.++.+++.++.|...+++.|..+...+..-|...--.+...++|+....           -++. .|+.+.-..
T Consensus       652 ~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~s-eDpevh~KY  730 (1666)
T KOG0985|consen  652 NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFS-EDPEVHFKY  730 (1666)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccc-cCchHHHHH
Confidence            3445556888999999999988888887776666655554444555555554432           1233 778888889


Q ss_pred             HHHHHhcCChHHHHHHHHhcCC-------------------C------------CcccH------HHHHHHHHHcCCchH
Q 004632          340 IEFYAECGKMSECEKVIHAIGE-------------------R------------NILSW------NMLISEYARKGMSKE  382 (741)
Q Consensus       340 ~~~~~~~~~~~~A~~~~~~~~~-------------------~------------~~~~~------~~li~~~~~~~~~~~  382 (741)
                      +.+.++.|++.+.+++.++-.-                   |            |...|      ...|..|.+.=++..
T Consensus       731 IqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~  810 (1666)
T KOG0985|consen  731 IQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSR  810 (1666)
T ss_pred             HHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcc
Confidence            9999999999999888765320                   1            11111      112334444333333


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHH-------------HHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCH
Q 004632          383 ALELLVQMQTWGLMPDSFSVAS-------------SLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFK  449 (741)
Q Consensus       383 a~~~~~~m~~~g~~p~~~~~~~-------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  449 (741)
                      .-.+...+.+..  -+......             +..-+.+.++...-...++..+..|..+..+++++...|..+++-
T Consensus       811 ~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNn  888 (1666)
T KOG0985|consen  811 TPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNN  888 (1666)
T ss_pred             cchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCC
Confidence            222222222211  11111111             222234455555555666666666666666666666666544322


Q ss_pred             HH----------------------------------------------------------------HHHHHHh-------
Q 004632          450 NL----------------------------------------------------------------AYLLFER-------  458 (741)
Q Consensus       450 ~~----------------------------------------------------------------a~~~~~~-------  458 (741)
                      .+                                                                -.+++.+       
T Consensus       889 PE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRq  968 (1666)
T KOG0985|consen  889 PERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQ  968 (1666)
T ss_pred             hHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHH
Confidence            11                                                                1111100       


Q ss_pred             ----cc------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccccHHhHHHHHHHHH
Q 004632          459 ----IQ------QKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEM--DEVTFLTAIQACSNIGQLEKGKWVHHKLI  526 (741)
Q Consensus       459 ----~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  526 (741)
                          ..      ..|+...+..+.++...+-+.+-+++++++.-.+..-  +...-+.++-. +-..+..++.++.+++-
T Consensus       969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen  969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLD 1047 (1666)
T ss_pred             HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhc
Confidence                00      0122233333344444444444444444443211100  00000111111 11111112222222221


Q ss_pred             HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------------CCHHHHHHHHHHHHhcCCH
Q 004632          527 SYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE-------------------------RNVVSWSAMIDCYGMHGQL  581 (741)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~  581 (741)
                      ..+. |      .+.......+-+++|..+|++..-                         ..+..|..+..+-.+.|.+
T Consensus      1048 nyDa-~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1048 NYDA-P------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             cCCc-h------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence            1110 0      011112223334444444443320                         2345688888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          582 NDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       582 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      .+|++-|-+.      .|+..|..++....+.|.|++.++++..+++....|...+  .|+-+|++.++..+-.+++   
T Consensus      1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred             HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh---
Confidence            8888766432      3667899999999999999999999999988766666554  5788999999999888777   


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 004632          662 PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM  727 (741)
Q Consensus       662 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  727 (741)
                       ..|+..-....+.-|...|.++.|.-+|...        +-|..|+..++..|.+..|.+.-++.
T Consensus      1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence             4688888889999999999999999888654        34888999999999999988776654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.8e-13  Score=134.72  Aligned_cols=275  Identities=13%  Similarity=0.036  Sum_probs=206.8

Q ss_pred             CHHHHHHHHHhccCC--Cc-hHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccccHHhHHH-H
Q 004632          448 FKNLAYLLFERIQQK--SV-VMWNSMICGFYQNGNSLEAINLFHQMYLNC--LEMDEVTFLTAIQACSNIGQLEKGKW-V  521 (741)
Q Consensus       448 ~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~-~  521 (741)
                      ..++|...|..++..  |. -....+..+|...+++++|..+|+.+.+..  ..-+..+|.+.+.-+-+.    -+.. +
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            345555666554332  22 233445566666677777777776665532  112445555555443221    1111 2


Q ss_pred             HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004632          522 HHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP  598 (741)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p  598 (741)
                      -+.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+  | ...+|+.+..-+.....++.|...|+.++.  +.|
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence            22333332 44688899999999999999999999998885  3 456888888888888999999999999887  677


Q ss_pred             CHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004632          599 NEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLN  675 (741)
Q Consensus       599 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~  675 (741)
                      ... .|..+.-.|.++++++.|+-.|+++.+.+ +-+......++..+.+.|+.|+|+.+++++  -.+.++......+.
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            554 78888889999999999999999998854 235667778888999999999999999999  34557777778888


Q ss_pred             HHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          676 GCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       676 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .+...+++++|+..++++.+.-|++..++..++.+|.+.|+.+.|+.-|.-+.+-
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            8999999999999999999999999999999999999999999999988877663

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.60  E-value=1.9e-12  Score=130.77  Aligned_cols=275  Identities=10%  Similarity=0.013  Sum_probs=189.6

Q ss_pred             cCCHHHHHHHHHhccCC--CchHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccccHHhHHH
Q 004632          446 CGFKNLAYLLFERIQQK--SVVMWNSM-ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFL--TAIQACSNIGQLEKGKW  520 (741)
Q Consensus       446 ~~~~~~a~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~  520 (741)
                      .|+++.|++.+....+.  ++..+..+ .....+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            46666666666654432  22222222 33336677777777777777653  34433222  22456667777777777


Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CH--------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004632          521 VHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSER---NV--------VSWSAMIDCYGMHGQLNDAASLFK  589 (741)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~A~~~~~  589 (741)
                      .++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.   +.        .+|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            77777766533 5666677777777778888888777776631   11        133333444444455666677777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCH
Q 004632          590 QMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANG  667 (741)
Q Consensus       590 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~  667 (741)
                      .+.+. .+.+......+..++...|+.++|.+.+++..+.  +|+.....  +......++.+++++.+++.  ..|.++
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~~  328 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDTP  328 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence            66543 2335667788888999999999999999988873  45553332  23334568999999999888  466677


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          668 SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ..+..++..|...+++++|.+.++++.+..|++. .+..|+.++.+.|+.++|.++|++-..
T Consensus       329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7888999999999999999999999999999865 466899999999999999999997654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=3.7e-11  Score=113.11  Aligned_cols=313  Identities=12%  Similarity=0.065  Sum_probs=224.3

Q ss_pred             HhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCch-HHHHHHHHHHhcCChHHHHHH
Q 004632          408 ACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVV-MWNSMICGFYQNGNSLEAINL  486 (741)
Q Consensus       408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~  486 (741)
                      .+...|..+.|+..+...+..-|-.=.+|..|....   .+.+.+..+...+...+.. .---+..++....+.+++++-
T Consensus       173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k  249 (559)
T KOG1155|consen  173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK  249 (559)
T ss_pred             HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777776666655544333443333332   2222222222222211110 001123455555677788887


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCCHH---HHHHHHHhcC
Q 004632          487 FHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVR--KDIYIDTALTDMYAKCGDLQ---TAQRVFDSMS  561 (741)
Q Consensus       487 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~  561 (741)
                      .+.....|.+.+...-+....+.....|+++|+.+|+++.+.++-  .|..+|..++  |.+..+..   -|..++ .+.
T Consensus       250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~-~id  326 (559)
T KOG1155|consen  250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVS-NID  326 (559)
T ss_pred             HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHH-Hhc
Confidence            777778777777666666666777888999999999998876432  2445555444  33322211   122222 222


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH
Q 004632          562 ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC  640 (741)
Q Consensus       562 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  640 (741)
                      +--+.|..++..-|.-.++.++|..+|++..+  +.|... .|+.+.+-|...++...|++-++++++.+ +.|-..|-.
T Consensus       327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG  403 (559)
T KOG1155|consen  327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG  403 (559)
T ss_pred             cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh
Confidence            33455667777888889999999999999999  788765 67777779999999999999999999854 457788889


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 004632          641 MVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD  718 (741)
Q Consensus       641 l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  718 (741)
                      |+++|.-.+...-|+-+|+++ . .|.|+..|.+|+.+|.+.++.++|++.|+++...+..+..++..|+++|-+.++.+
T Consensus       404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~  483 (559)
T KOG1155|consen  404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN  483 (559)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999 3 45588999999999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 004632          719 EFGKVRSIMEV  729 (741)
Q Consensus       719 ~A~~~~~~~~~  729 (741)
                      +|..+|++-.+
T Consensus       484 eAa~~yek~v~  494 (559)
T KOG1155|consen  484 EAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHH
Confidence            99999998665

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=3.6e-11  Score=116.26  Aligned_cols=262  Identities=12%  Similarity=0.069  Sum_probs=212.5

Q ss_pred             CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHH
Q 004632          463 SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTD  542 (741)
Q Consensus       463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  542 (741)
                      ++.....-..-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-..+++.- +..+.+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence            3344445556677789999999999998775 35566666666778888888887777777887764 446778888888


Q ss_pred             HHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHH
Q 004632          543 MYAKCGDLQTAQRVFDSMSER---NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEE  618 (741)
Q Consensus       543 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~  618 (741)
                      -|.-.|+..+|++.|.+...-   -...|-.....|+-.|..++|+..+..+.+  +-|.. ..+..+.--|.+.++++.
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHH
Confidence            888899999999999987743   346899999999999999999999999888  45533 244455557888999999


Q ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004632          619 GKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP---------FPANGSIWGALLNGCRIHKRIDVMKTI  689 (741)
Q Consensus       619 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~  689 (741)
                      |.++|.++.... +-|+..++-++-.....+.+.+|..+|+...         .+.-..+++.|+.++++.+.+++|+..
T Consensus       399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            999999998743 4467778888888888899999999998761         112455789999999999999999999


Q ss_pred             HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +++++.+.|.++.++..++-+|...|+.+.|.+.|.+.+-
T Consensus       478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.58  E-value=1.6e-09  Score=106.46  Aligned_cols=543  Identities=12%  Similarity=0.127  Sum_probs=318.9

Q ss_pred             CCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHC-CCCCChhhHHHHH
Q 004632          125 GFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVRE-GVEPDFVTMLSLA  203 (741)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll  203 (741)
                      +..|+...|-.+-+++      +.+...+.+|+.    .|-..+..+..+|++......|+..... .+......|...+
T Consensus        76 ~~~~T~~~~~~vn~c~------er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl  145 (835)
T KOG2047|consen   76 HLCPTDPAYESVNNCF------ERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL  145 (835)
T ss_pred             ccCCCChHHHHHHHHH------HHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence            4466666666655544      777777777754    6777777888899998888888887654 2333344666777


Q ss_pred             HHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc----------hHHHHHHHHH
Q 004632          204 EACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTT----------SWTAMISCYN  273 (741)
Q Consensus       204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~  273 (741)
                      ......|-++-+..+|...++..    +....-.|..+++.+++++|-+.+..+...+..          .|.-+-.-.+
T Consensus       146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis  221 (835)
T KOG2047|consen  146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS  221 (835)
T ss_pred             HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence            77777777777777777776553    333566677777778888877777776553322          2322222222


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHH
Q 004632          274 RSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECE  353 (741)
Q Consensus       274 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~  353 (741)
                      ++.+.-..+                                ....+++.....--. .-..++..|+..|.+.|.+++|.
T Consensus       222 ~~p~~~~sl--------------------------------nvdaiiR~gi~rftD-q~g~Lw~SLAdYYIr~g~~ekar  268 (835)
T KOG2047|consen  222 QNPDKVQSL--------------------------------NVDAIIRGGIRRFTD-QLGFLWCSLADYYIRSGLFEKAR  268 (835)
T ss_pred             hCcchhccc--------------------------------CHHHHHHhhcccCcH-HHHHHHHHHHHHHHHhhhhHHHH
Confidence            222111111                                111122222211100 11245566666666666666666


Q ss_pred             HHHHhcCCC--CcccHHHHHHHHHH----------------cC------CchHHHHHHHHHHHCCC----------CC-C
Q 004632          354 KVIHAIGER--NILSWNMLISEYAR----------------KG------MSKEALELLVQMQTWGL----------MP-D  398 (741)
Q Consensus       354 ~~~~~~~~~--~~~~~~~li~~~~~----------------~~------~~~~a~~~~~~m~~~g~----------~p-~  398 (741)
                      ++|++....  ++.-|..+.++|.+                .+      +++-.+..|+.+...+.          .| +
T Consensus       269 Dvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n  348 (835)
T KOG2047|consen  269 DVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN  348 (835)
T ss_pred             HHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence            666654321  12222222222221                11      12233444444443321          01 1


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC-----cch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCch-------
Q 004632          399 SFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-----DEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVV-------  465 (741)
Q Consensus       399 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------  465 (741)
                      ..++..-.  -...|+..+-...+.++++.-.+     ... .+..+...|-..|+.+.|..+|++..+-+-.       
T Consensus       349 V~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~  426 (835)
T KOG2047|consen  349 VEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE  426 (835)
T ss_pred             HHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence            11121111  12345666777778777764322     222 8899999999999999999999988765433       


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------C------CHHHHHHHHHHHhccccHHhHHHHHHHHHHc
Q 004632          466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLE-----------M------DEVTFLTAIQACSNIGQLEKGKWVHHKLISY  528 (741)
Q Consensus       466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  528 (741)
                      +|......=.++.+++.|+.+++......-.           +      +...|...++..-..|-++....+++.+++.
T Consensus       427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL  506 (835)
T KOG2047|consen  427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL  506 (835)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444444555678899999988876532211           1      2234455555556677888888999999887


Q ss_pred             CCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC----CCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 004632          529 GVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE----RNV-VSWSAMIDCYGM---HGQLNDAASLFKQMLDSGIKPNE  600 (741)
Q Consensus       529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~  600 (741)
                      .+. ++.+.......+....-++++.+++++-..    |++ ..|+..+.-+.+   ....+.|..+|+++++ |++|..
T Consensus       507 ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~  584 (835)
T KOG2047|consen  507 RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH  584 (835)
T ss_pred             hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence            655 333333333345566778999999998764    554 467777665554   3468999999999999 677765


Q ss_pred             HHHHHHHH--HHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH---H
Q 004632          601 VTFMNILW--ACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWG---A  672 (741)
Q Consensus       601 ~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~---~  672 (741)
                      .-+..|+-  .-.+-|-...|+++++++.. ++++.  ...|+..+.--...=-+....++++++ ..-|+..+-.   .
T Consensus       585 aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr  663 (835)
T KOG2047|consen  585 AKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR  663 (835)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence            43323332  33455888899999999765 33333  345665554333222233334444444 2224433332   2


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHH
Q 004632          673 LLNGCRIHKRIDVMKTIEKELSVTGTN--DNGYYTLLSNIYAEEGNWDE  719 (741)
Q Consensus       673 l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~  719 (741)
                      ....-.+.|..+.|..+|....+.-|+  +...|...-..=.+-||-+.
T Consensus       664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT  712 (835)
T KOG2047|consen  664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT  712 (835)
T ss_pred             HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence            334457789999999999888876544  55678887777778888443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=8.6e-13  Score=130.06  Aligned_cols=280  Identities=12%  Similarity=0.068  Sum_probs=221.1

Q ss_pred             ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC------CchHHHHHHHHHHhcCChHHHHHHH
Q 004632          414 SLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK------SVVMWNSMICGFYQNGNSLEAINLF  487 (741)
Q Consensus       414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~  487 (741)
                      +..+|...|..+.........+...++.+|...+++++|.++|+.+.+.      +..+|++.+..+.+    +-++..+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence            4567777777744444444448888899999999999999999888753      55677777655433    1222222


Q ss_pred             HH-HHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 004632          488 HQ-MYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVV  566 (741)
Q Consensus       488 ~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  566 (741)
                      .+ +... -+-.+.+|.++..+|.-+++.+.|++.|++.++.+.. ..++|+.+..-+.....+|.|...|+.....|+.
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r  487 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR  487 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence            22 2222 3556889999999999999999999999999886432 6788888888889999999999999999987776


Q ss_pred             HHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHH
Q 004632          567 SWSA---MIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMV  642 (741)
Q Consensus       567 ~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  642 (741)
                      .|++   +...|.+.++++.|+-.|+++.+  +.|. .+....+...+.+.|+.++|+.+++++...... ++..--.-+
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~  564 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA  564 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence            6665   56789999999999999999999  7885 456777777899999999999999999885432 444444567


Q ss_pred             HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632          643 DLLSRSGDIEGAFKMIHSMP--FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       643 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      ..+...+++++|+..+++++  .|.+..++..++..|.+.|+.+.|+.-+--+..++|.-..
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            77888999999999999993  5556778888899999999999999999999999998553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.56  E-value=1.8e-11  Score=123.77  Aligned_cols=286  Identities=10%  Similarity=0.019  Sum_probs=178.5

Q ss_pred             cCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHH
Q 004632          377 KGMSKEALELLVQMQTWGLMPDSFSVA-SSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYL  454 (741)
Q Consensus       377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~  454 (741)
                      .|+++.|.+.+....+..  +++..+. ....+....|+++.+.+.+..+.+..+.... ........+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            577777776666654431  1222222 2222235666666666666666655444433 22222445555555555555


Q ss_pred             HHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCC
Q 004632          455 LFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVR  531 (741)
Q Consensus       455 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  531 (741)
                      .++++.+.   ++.....+...|.+.|++++|.+++..+.+.+..++. ....+-                         
T Consensus       175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------  228 (398)
T PRK10747        175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------  228 (398)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence            55544332   2334444445555555555555555555444322111 110000                         


Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004632          532 KDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW  608 (741)
Q Consensus       532 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~  608 (741)
                        ...|..++.......+.+...++++.+.+   .++.....+...+...|+.++|.+++++..+  ..|+....  ++.
T Consensus       229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~  302 (398)
T PRK10747        229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLI  302 (398)
T ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHH
Confidence              01122223333334456666777777653   4777888889999999999999999999988  34555322  233


Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004632          609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMK  687 (741)
Q Consensus       609 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~  687 (741)
                      +....++.+++.+..+...+.. +-|+..+..++..+.+.|++++|.+.|++. ...|+...+..+..++.+.|+.++|.
T Consensus       303 ~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~  381 (398)
T PRK10747        303 PRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA  381 (398)
T ss_pred             hhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4445689999999999988753 345677888999999999999999999998 67799888889999999999999999


Q ss_pred             HHHHHHhccC
Q 004632          688 TIEKELSVTG  697 (741)
Q Consensus       688 ~~~~~~~~~~  697 (741)
                      .++++.+.+-
T Consensus       382 ~~~~~~l~~~  391 (398)
T PRK10747        382 AMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHhhh
Confidence            9999987653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.55  E-value=1e-09  Score=110.44  Aligned_cols=401  Identities=12%  Similarity=0.042  Sum_probs=263.9

Q ss_pred             hCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-
Q 004632          326 KGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFS-  401 (741)
Q Consensus       326 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-  401 (741)
                      ..+. .++.++..|.-.....|+++.+.+.|++...   .....|+.+...+...|.-..|..+++.-....-.|+..+ 
T Consensus       317 ~~~q-nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~  395 (799)
T KOG4162|consen  317 KKFQ-NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV  395 (799)
T ss_pred             hhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence            3344 7888999999999999999999999998764   3445688999999999999999999988765432344333 


Q ss_pred             HHHHHHHh-hccCChHHHHHHHHHHHHhc--CC---cchhHHHHHHHHHhcC-----------CHHHHHHHHHhccCC--
Q 004632          402 VASSLSAC-GNVGSLQLGLQIHGHVIKID--CK---DEFVQSSLIDMYSKCG-----------FKNLAYLLFERIQQK--  462 (741)
Q Consensus       402 ~~~ll~~~-~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~--  462 (741)
                      +...-..| .+.+.++++..+-.+++...  ..   ....+..+.-+|...-           ...++.+.+++..+.  
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~  475 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP  475 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            33333334 46788888888888887722  21   2225555555554321           223345555555432  


Q ss_pred             -CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHH-cCCCCCchhHHHH
Q 004632          463 -SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLIS-YGVRKDIYIDTAL  540 (741)
Q Consensus       463 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l  540 (741)
                       |+...-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+...+ .|....  ....-
T Consensus       476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--l~~~~  553 (799)
T KOG4162|consen  476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--LMDGK  553 (799)
T ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--hchhh
Confidence             33333334445667788888888888888876677788888888888888888888888876643 332111  11111


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCC-----CCHH-H--HHHHHH----HHHhcCCHHHHHHHHHH-----------------H
Q 004632          541 TDMYAKCGDLQTAQRVFDSMSE-----RNVV-S--WSAMID----CYGMHGQLNDAASLFKQ-----------------M  591 (741)
Q Consensus       541 ~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~--~~~l~~----~~~~~~~~~~A~~~~~~-----------------~  591 (741)
                      ++.-..-++.+++......+..     +.+. +  -..+.+    .....++..+|.+...+                 +
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence            1222335666666555443321     0000 0  000000    00000111111111111                 1


Q ss_pred             HHcCCCCCH--------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 004632          592 LDSGIKPNE--------VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P  662 (741)
Q Consensus       592 ~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~  662 (741)
                      ....+.|..        ..|......+...+..++|...+.++.... +.....|...+..+...|++++|.+.|... .
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence            111122221        134445557788889999999998887642 456778888888999999999999999888 3


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          663 -FPANGSIWGALLNGCRIHKRIDVMKT--IEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       663 -~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                       .|.+......++..+.+.|+..-|..  ++..+.+.+|.++.+|..|+.++.+.|+.+.|.+.|+-..+-
T Consensus       713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence             45567788899999999998877777  999999999999999999999999999999999999988773

>TIGR00540 hemY_coli hemY protein

Probab=99.55  E-value=2.1e-11  Score=124.10  Aligned_cols=79  Identities=16%  Similarity=0.056  Sum_probs=43.6

Q ss_pred             CChHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632          649 GDIEGAFKMIHSM--PFPANG--SIWGALLNGCRIHKRIDVMKTIEK--ELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK  722 (741)
Q Consensus       649 ~~~~~A~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  722 (741)
                      ++.+.+.+.+++.  ..|.++  ....++++.+.+.|++++|.+.++  .+.+..|++.. +..|+.++.+.|+.++|.+
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence            3444455555444  222233  445566666666666666666666  34445554433 4466666666666666666


Q ss_pred             HHHHHH
Q 004632          723 VRSIME  728 (741)
Q Consensus       723 ~~~~~~  728 (741)
                      +|++..
T Consensus       392 ~~~~~l  397 (409)
T TIGR00540       392 MRQDSL  397 (409)
T ss_pred             HHHHHH
Confidence            666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.53  E-value=4.6e-14  Score=136.31  Aligned_cols=250  Identities=15%  Similarity=0.197  Sum_probs=107.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHhc-cC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 004632          439 LIDMYSKCGFKNLAYLLFERI-QQ----KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG  513 (741)
Q Consensus       439 l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  513 (741)
                      +...+.+.|++++|.+++++. ..    .++..|..+.......++++.|...++++...+.. ++..+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence            355555666666666666322 11    23344445555555667777777777777654322 34445555554 5777


Q ss_pred             cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004632          514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS-----ERNVVSWSAMIDCYGMHGQLNDAASLF  588 (741)
Q Consensus       514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~  588 (741)
                      ++++|..++....+..  +++..+..++..+.+.++++++..+++.+.     +++...|..+...+.+.|+.++|++.+
T Consensus        92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7777777776654432  345556667777888888888888887754     246778888888999999999999999


Q ss_pred             HHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCC
Q 004632          589 KQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPA  665 (741)
Q Consensus       589 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~  665 (741)
                      +++.+  ..|+ ......++..+...|+.+++.++++...+.. +.++..+..++.+|...|+.++|+..+++.  ..|.
T Consensus       170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            99999  6786 5578888889999999999999998887753 556778888999999999999999999998  3566


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          666 NGSIWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      |+.....++.++...|+.++|..+.+++.+
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            888889999999999999999999888764

>TIGR00540 hemY_coli hemY protein

Probab=99.53  E-value=2.3e-11  Score=123.79  Aligned_cols=283  Identities=7%  Similarity=-0.078  Sum_probs=216.6

Q ss_pred             hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC--CCch--HHHHHHHHHHhcCChHHHH
Q 004632          409 CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ--KSVV--MWNSMICGFYQNGNSLEAI  484 (741)
Q Consensus       409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~A~  484 (741)
                      ....|+++.|.+.+....+..+.+...+-.....+...|+.+.|...+.+..+  |+..  ..-.....+...|+++.|.
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            34679999999999998887766555667778889999999999999988644  3332  3333577888899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHH---H----hcCCHHHHHHHH
Q 004632          485 NLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY---A----KCGDLQTAQRVF  557 (741)
Q Consensus       485 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~  557 (741)
                      ..++.+.+.. +-+......+...+...|+++.|.+.+..+.+.++.++......-..++   .    .....+.....+
T Consensus       174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999874 4456778889999999999999999999999987553332211111111   2    222334555556


Q ss_pred             HhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHH-HHHHhccCCHHHHHHHHHHHHHcCC
Q 004632          558 DSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVT--FMNI-LWACSHSGSVEEGKFYFNAMRIFGV  631 (741)
Q Consensus       558 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~  631 (741)
                      ....+   .++..+..+...+...|+.++|.+.+++..+  ..||...  +..+ .......++.+.+.+.++...+.. 
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-  329 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-  329 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence            55553   4788899999999999999999999999999  4566542  1122 223445688899999998888742 


Q ss_pred             CCCc--cHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          632 EPDL--QHYACMVDLLSRSGDIEGAFKMIHS--M-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       632 ~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      +-++  ....+++..+.+.|++++|.+.|++  . ...|+...+..++..+.+.|+.++|.+++++.+.
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2334  6677899999999999999999994  3 5678888888999999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.6e-11  Score=110.09  Aligned_cols=165  Identities=12%  Similarity=0.052  Sum_probs=92.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632          571 MIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFM-NILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG  649 (741)
Q Consensus       571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  649 (741)
                      +...+....+.+.|...+.+..+  ..|+..--+ .+.+.....|+++.|++.|+.+.+.+..--..+...|..+|...|
T Consensus       186 LAq~~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg  263 (389)
T COG2956         186 LAQQALASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG  263 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence            33444445566666666666666  345444222 233356666667777766666666544434556666666676777


Q ss_pred             ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh--cCChHHHHHHHHH
Q 004632          650 DIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAE--EGNWDEFGKVRSI  726 (741)
Q Consensus       650 ~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~  726 (741)
                      +.++...++.++ ...+.......+........-.+.|...+.+-+...|.-...+..+..-...  -|..++-+..++.
T Consensus       264 ~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~  343 (389)
T COG2956         264 KPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD  343 (389)
T ss_pred             CHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence            777766666665 3344444444444444444445555555556566666544444444322222  2446666677777


Q ss_pred             HHhCCCccCCC
Q 004632          727 MEVTGLKKVPG  737 (741)
Q Consensus       727 ~~~~~~~~~~~  737 (741)
                      |....++.+|.
T Consensus       344 mvge~l~~~~~  354 (389)
T COG2956         344 MVGEQLRRKPR  354 (389)
T ss_pred             HHHHHHhhcCC
Confidence            77666666654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.2e-10  Score=112.67  Aligned_cols=273  Identities=13%  Similarity=0.024  Sum_probs=214.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004632          435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSN  511 (741)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~  511 (741)
                      +......-+...+++.+..++++.+.+.++   ..+..-|.++...|+..+-..+=.++.+. .+-.+.+|-++.--|..
T Consensus       246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~  324 (611)
T KOG1173|consen  246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM  324 (611)
T ss_pred             HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence            556667777788899999999988876544   45555677888888888877777777765 45567888888888888


Q ss_pred             cccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004632          512 IGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLF  588 (741)
Q Consensus       512 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~  588 (741)
                      .|..++|++.|.+....+.. -...|-.+...|+-.|..+.|...+....+   -....+--+..-|.+.++.+.|.+.|
T Consensus       325 i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            89999999999988765433 234677788889999999999988876653   12222333445678899999999999


Q ss_pred             HHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCC----CCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          589 KQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIF--GVE----PDLQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       589 ~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      ..+..  +.|+. ...+.+.-.....+.+.+|..+|+..+..  ...    .-..+++.|+.+|.+.+++++|+..+++.
T Consensus       404 ~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  404 KQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            99998  78855 46676666667789999999999988741  111    12446889999999999999999999998


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 004632          662 --PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIY  711 (741)
Q Consensus       662 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  711 (741)
                        ..+.+..++..++..+...|+++.|.+.|.+++.+.|++..+-..|..+.
T Consensus       482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence              56778899999999999999999999999999999999987777776554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.52  E-value=3.8e-09  Score=103.87  Aligned_cols=533  Identities=11%  Similarity=0.115  Sum_probs=269.3

Q ss_pred             cHHHHHHHhhcCCChhhHHHHHHHHHHh-CCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCC
Q 004632           97 IYPSVLRACSSLGDLGSGEKVHGRIIKC-GFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNA  175 (741)
Q Consensus        97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  175 (741)
                      .+...+..+.++|++-..+..|+..+.. .+.-...+|...+......|-++.+.++++....-++..-+..|..++..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d  183 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD  183 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            3444445555556666666665555432 222223355555555555566666666666655544444556666666666


Q ss_pred             ChhHHHHHHHHhHHCC------CCCChhhHHHHHHHhcccCChhhH---HHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 004632          176 DVSEGLKMFHSMVREG------VEPDFVTMLSLAEACGELCSLRPA---RSIHGHVLRRKIKIDGPLGNSFIVMYSKCGD  246 (741)
Q Consensus       176 ~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  246 (741)
                      ++++|.+.+.......      .+.+...|..+....++..+.-..   ..+...+...-...-...|.+|.+.|++.|+
T Consensus       184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~  263 (835)
T KOG2047|consen  184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL  263 (835)
T ss_pred             chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence            6666666665554321      122333444444444443332222   2222222222122224567888888888888


Q ss_pred             HHHHHHHHhccCCC--CcchHHHHHHHHHh----------------cCC------hhHHHHHHHHHHHCCC---------
Q 004632          247 LLSAERTFVKIEKR--CTTSWTAMISCYNR----------------SGW------FQKALESFVKMLEVKE---------  293 (741)
Q Consensus       247 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~----------------~~~------~~~a~~~~~~m~~~g~---------  293 (741)
                      ++.|..++++....  .+.-++.+-.+|++                .++      ++-.+.-|+.+...+.         
T Consensus       264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR  343 (835)
T KOG2047|consen  264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR  343 (835)
T ss_pred             hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence            88888888765431  11112222222211                111      2222333444433211         


Q ss_pred             --CCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCC-----CcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCc--
Q 004632          294 --EPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGP-----EYDYLGPALIEFYAECGKMSECEKVIHAIGERNI--  364 (741)
Q Consensus       294 --~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--  364 (741)
                        +.+..+|..-...  ..|+..+....+.+.++.- .|     .....+..+...|-..|+++.|..+|++...-+-  
T Consensus       344 Qn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~  420 (835)
T KOG2047|consen  344 QNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT  420 (835)
T ss_pred             cCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence              1223333333322  3355666667777776642 12     3346788899999999999999999998765332  


Q ss_pred             -----ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHH
Q 004632          365 -----LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSL  439 (741)
Q Consensus       365 -----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  439 (741)
                           .+|......-.+..+++.|++++++...   .|....    + .+...+..-++. ++        .+..+|..+
T Consensus       421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~r-lh--------rSlkiWs~y  483 (835)
T KOG2047|consen  421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQAR-LH--------RSLKIWSMY  483 (835)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHHH-HH--------HhHHHHHHH
Confidence                 3466666666778888888888777653   233221    0 011111111100 00        011144445


Q ss_pred             HHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH---hcc
Q 004632          440 IDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDE-VTFLTAIQAC---SNI  512 (741)
Q Consensus       440 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~---~~~  512 (741)
                      +..--..|-++....+++++..-   ++...-.....+-.+.-++++.+.|++-+..-..|+. ..|+..+.-+   ...
T Consensus       484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            55555555556666666555432   2221111112222334455555555543333223332 2233333222   223


Q ss_pred             ccHHhHHHHHHHHHHcCCCCCch--hHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHH
Q 004632          513 GQLEKGKWVHHKLISYGVRKDIY--IDTALTDMYAKCGDLQTAQRVFDSMSE-----RNVVSWSAMIDCYGMHGQLNDAA  585 (741)
Q Consensus       513 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~  585 (741)
                      ..++.|..+|+++.+ |.+|.-.  .|-.....-..-|-...|.+++++...     .-...||+.|.--...=.+....
T Consensus       564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR  642 (835)
T KOG2047|consen  564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR  642 (835)
T ss_pred             CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence            345666666666666 4443221  111111222234566667777766552     12345677666544444455667


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChH
Q 004632          586 SLFKQMLDSGIKPNEVTFMNILW---ACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIE  652 (741)
Q Consensus       586 ~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~  652 (741)
                      .+|+++++  .-|+...-...+.   .-++.|..+.|..++..--+ ..+..+...|.+.=.-=.+.|+-+
T Consensus       643 ~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  643 EIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             HHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence            78888887  4666654333333   44677888888888877666 334445566666666666777733

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=7.7e-08  Score=99.57  Aligned_cols=548  Identities=14%  Similarity=0.102  Sum_probs=289.3

Q ss_pred             hhHHHHHhHhcCChhHHHHHHccCCC--CCceeH----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHh
Q 004632          133 QTSILCTYGEFGCLDDARKVFDKMTS--RDVVSW----SSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEAC  206 (741)
Q Consensus       133 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  206 (741)
                      +..+...|.+.|-...|++-+..+..  +.++.-    -.-+..|...-.++..++.++.|...+++.|..+...+..-+
T Consensus       609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky  688 (1666)
T KOG0985|consen  609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY  688 (1666)
T ss_pred             HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45566778888999989888777653  111111    112334556678899999999999988888877766665555


Q ss_pred             cccCChhhHHHHHHHHHHh-----------cCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---------------C
Q 004632          207 GELCSLRPARSIHGHVLRR-----------KIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---------------R  260 (741)
Q Consensus       207 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~  260 (741)
                      ...=-.+.-.++|+.....           ++..|+.+.-..|.+.++.|++.+.+++.++-.-               .
T Consensus       689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~  768 (1666)
T KOG0985|consen  689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT  768 (1666)
T ss_pred             HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence            5443344444455444331           3566777888999999999999999988865421               1


Q ss_pred             C---------cc-hHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCChhh-------------HHHHHH
Q 004632          261 C---------TT-SWTA------------MISCYNRSGWFQKALESFVKMLEVKEEPNLIT-------------LITVLG  305 (741)
Q Consensus       261 ~---------~~-~~~~------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-------------~~~ll~  305 (741)
                      |         .. .-..            .|..|.+.-+....-.+...+.+..  -+...             ...+..
T Consensus       769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv~  846 (1666)
T KOG0985|consen  769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELVE  846 (1666)
T ss_pred             ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHHH
Confidence            1         00 0111            2223332222211111111111111  01111             122333


Q ss_pred             HhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHH-H---HHHhc------CCCC------------
Q 004632          306 SCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECE-K---VIHAI------GERN------------  363 (741)
Q Consensus       306 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~-~---~~~~~------~~~~------------  363 (741)
                      -+.+.+++..-...++..+..|.  .++.++++|+.+|..+++-.+-. +   .++..      .++|            
T Consensus       847 EvEkRNRLklLlp~LE~~i~eG~--~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq  924 (1666)
T KOG0985|consen  847 EVEKRNRLKLLLPWLESLIQEGS--QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ  924 (1666)
T ss_pred             HHHhhhhHHHHHHHHHHHHhccC--cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence            34455666666677777777774  56777888888877665433221 0   01100      0011            


Q ss_pred             -----------cccHHHHHHHHHHcCCchH---HH--------HHHHHHHHCCCC--CCHHHHHHHHHHhhccCChHHHH
Q 004632          364 -----------ILSWNMLISEYARKGMSKE---AL--------ELLVQMQTWGLM--PDSFSVASSLSACGNVGSLQLGL  419 (741)
Q Consensus       364 -----------~~~~~~li~~~~~~~~~~~---a~--------~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~  419 (741)
                                 -..|....+.+.+..+.+.   ++        .++++....+++  .|+........++...+-+.+-+
T Consensus       925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen  925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred             CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence                       0123333444444444332   21        233333433322  34555556667777777777777


Q ss_pred             HHHHHHHHhcCCcch---hHHHH---------------------------HHHHHhcCCHHHHHHHHHhccC--------
Q 004632          420 QIHGHVIKIDCKDEF---VQSSL---------------------------IDMYSKCGFKNLAYLLFERIQQ--------  461 (741)
Q Consensus       420 ~~~~~~~~~~~~~~~---~~~~l---------------------------~~~~~~~~~~~~a~~~~~~~~~--------  461 (741)
                      +++++++-.....+.   ..+.+                           .......+-+++|..+|+...-        
T Consensus      1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred             HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence            777766543332211   22222                           2233334455566665554321        


Q ss_pred             -----------------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHH
Q 004632          462 -----------------KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHK  524 (741)
Q Consensus       462 -----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  524 (741)
                                       ..+..|+.+..+-.+.|...+|++-|=+      ..|+..|..++..+.+.|.+++-.+++..
T Consensus      1085 ie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred             HHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                             1345667777777777777776665532      24566677777777777777777777776


Q ss_pred             HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004632          525 LISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFM  604 (741)
Q Consensus       525 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~  604 (741)
                      .++..-.|.+  -..++-+|++.++..+.++++.   .||......+..-|...|.++.|.-+|..         ...|.
T Consensus      1159 aRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a 1224 (1666)
T KOG0985|consen 1159 ARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFA 1224 (1666)
T ss_pred             HHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHH
Confidence            6665444443  3466677777777776665543   35555555555555555555555444432         22244


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004632          605 NILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRID  684 (741)
Q Consensus       605 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  684 (741)
                      .|...+...|++..|...-+++      .+..+|..+..+|...+.+.-|.-.  .+..-....-+..++..|...|-++
T Consensus      1225 ~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1225 KLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHH
Confidence            4444445555555554443322      1334454444444444433322110  0011223334455566666666666


Q ss_pred             HHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632          685 VMKTIEKELSVTGTNDNGYYTLLSNIYA  712 (741)
Q Consensus       685 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~  712 (741)
                      +-..+++..+.+..-....+..|+-.|.
T Consensus      1297 ElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred             HHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence            6666666666555555555555554443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=4.1e-10  Score=106.91  Aligned_cols=220  Identities=11%  Similarity=0.038  Sum_probs=172.8

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 004632          474 FYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTA  553 (741)
Q Consensus       474 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  553 (741)
                      +.-.|+.-.|..-|+..+.....++. .|..+...|....+.++....|....+.++. ++.+|..-.+++.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence            44578999999999999886544333 2666777789999999999999999887755 667777788888889999999


Q ss_pred             HHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632          554 QRVFDSMSER---NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       554 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  629 (741)
                      ..-|++...-   ++..|-.+..+..+.+++++++..|++.+++  -|+ +..|+.....+..++++++|++.|+..++.
T Consensus       414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            9999998853   4556777777777889999999999999984  565 458998999999999999999999999873


Q ss_pred             CCC-------CCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632          630 GVE-------PDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT  698 (741)
Q Consensus       630 ~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  698 (741)
                      ...       +.+.+-..++..-.+ +++.+|.++++++ ...| ....+..|.....+.|+.++|+++|++...+-.
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            211       112222233333333 8899999999998 4444 566889999999999999999999999876544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=9.2e-10  Score=100.07  Aligned_cols=131  Identities=12%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR  647 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (741)
                      ..++..++.-..++++.+.+++....- +..|..--..+..+++..|++.+|+++|-++....++-+..-...|.++|.+
T Consensus       362 RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~  440 (557)
T KOG3785|consen  362 RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR  440 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence            344455555555666666666665553 2222222233555666677777777777665443332222223345666777


Q ss_pred             cCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632          648 SGDIEGAFKMIHSMPFPANGSIW-GALLNGCRIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       648 ~~~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      +++.+.|.+++-++..+.+.-++ ..+..-|.+.+.+=-|.+.|+.+..++|.
T Consensus       441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence            77777777777666433333333 33344566777766666666666666654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=3.6e-09  Score=103.25  Aligned_cols=281  Identities=15%  Similarity=0.102  Sum_probs=162.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcc--------CCCc----------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004632          437 SSLIDMYSKCGFKNLAYLLFERIQ--------QKSV----------VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMD  498 (741)
Q Consensus       437 ~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  498 (741)
                      ......+...|++.+|+++++...        ..|.          .+--.+...+...|+.++|..++...++.+ .+|
T Consensus       179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D  257 (652)
T KOG2376|consen  179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PAD  257 (652)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCC
Confidence            334445555666666666665541        1110          122334455667888888888888888764 334


Q ss_pred             HHHHHHHHH---HHhccccHHh--HHH------------HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004632          499 EVTFLTAIQ---ACSNIGQLEK--GKW------------VHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS  561 (741)
Q Consensus       499 ~~~~~~ll~---~~~~~~~~~~--a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  561 (741)
                      ........+   +.....++-.  ++.            ....+.. .-.-....-+.++.+|  .+..+.+.++...+.
T Consensus       258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp  334 (652)
T KOG2376|consen  258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALF--TNKMDQVRELSASLP  334 (652)
T ss_pred             chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence            322221111   1111111111  111            1111111 0011111222333333  356677777777776


Q ss_pred             CCC-HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------HHHH
Q 004632          562 ERN-VVSWSAMIDCY--GMHGQLNDAASLFKQMLDSGIKPNE--VTFMNILWACSHSGSVEEGKFYFN--------AMRI  628 (741)
Q Consensus       562 ~~~-~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~  628 (741)
                      ... ...+.+++...  ++...+..+.+++...-+.  .|..  ......+......|+++.|.+++.        .+.+
T Consensus       335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~  412 (652)
T KOG2376|consen  335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE  412 (652)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence            432 23344444332  2233577888888888773  4544  344455567788999999999999        5555


Q ss_pred             cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632          629 FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-----PFPA----NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      .+.  .+.+...++..+.+.++.+.|..++.+.     ...+    -...+..++..-.++|+-++|...++++.+.+|+
T Consensus       413 ~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~  490 (652)
T KOG2376|consen  413 AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN  490 (652)
T ss_pred             hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence            443  3456667888888888877777776665     1112    2233444445556789999999999999999999


Q ss_pred             CchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632          700 DNGYYTLLSNIYAEEGNWDEFGKVRSI  726 (741)
Q Consensus       700 ~~~~~~~l~~~~~~~g~~~~A~~~~~~  726 (741)
                      +..+...+.-+|... |.+.|..+-.+
T Consensus       491 d~~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  491 DTDLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             hHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            999999998777665 55666655543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=7.2e-10  Score=103.08  Aligned_cols=284  Identities=11%  Similarity=0.025  Sum_probs=137.5

Q ss_pred             cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHH
Q 004632          377 KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLL  455 (741)
Q Consensus       377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~  455 (741)
                      .|+|..|...+.+-.+.+-.| ...|.....+....|+.+.+-+++.++-+...++.. +.-.........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            466666666666655543222 222333334445555666666655555555444333 444555555555555555444


Q ss_pred             HHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCC
Q 004632          456 FERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRK  532 (741)
Q Consensus       456 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  532 (741)
                      +.++.+   .++........+|.+.|++.....++..+.+.|.-.+...-..                            
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------------------  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------------------  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence            443332   2334444444555555555555555555554443322211000                            


Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004632          533 DIYIDTALTDMYAKCGDLQTAQRVFDSMS---ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWA  609 (741)
Q Consensus       533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~  609 (741)
                      ...++..+++-....+..+.-...++..+   +.++..-.+++.-+.+.|+.++|.++.++..+++..|+..    ..-.
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~  303 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP  303 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence            01122222222222222333333444443   1344444555555566666666666666666655555411    1113


Q ss_pred             HhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004632          610 CSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKT  688 (741)
Q Consensus       610 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~  688 (741)
                      +.+.++.+.-++..+.-.+.. +-++..+.+|+..|.+.+.|.+|.+.|+.. +..|+...+..+..++.+.|+.++|.+
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence            344555555555555544421 223355555666666666666666666554 555666666666666666666666666


Q ss_pred             HHHHHh
Q 004632          689 IEKELS  694 (741)
Q Consensus       689 ~~~~~~  694 (741)
                      +.++.+
T Consensus       383 ~r~e~L  388 (400)
T COG3071         383 VRREAL  388 (400)
T ss_pred             HHHHHH
Confidence            555554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.44  E-value=6.8e-10  Score=103.25  Aligned_cols=278  Identities=14%  Similarity=0.036  Sum_probs=195.2

Q ss_pred             hCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHH
Q 004632          173 DNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAER  252 (741)
Q Consensus       173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  252 (741)
                      -.|+|..|+++..+-.+.+-.| ...|.....+....||.+.+-.++.+..+.-..++..+.-.........||.+.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            3889999999888877665444 345666777778888888888888888877666777777777788888888888877


Q ss_pred             HHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-------hHHHHHHHhhccCChhhHHHHHHH
Q 004632          253 TFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI-------TLITVLGSCAGLGWLREGKSVHCQ  322 (741)
Q Consensus       253 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~  322 (741)
                      -.+++.+   .++........+|.+.|++.....++..|.+.|.-.|..       +|..+++-+...+.          
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~----------  244 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG----------  244 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc----------
Confidence            7666543   456677777888888888888888888888777654433       23333333222222          


Q ss_pred             HHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH
Q 004632          323 IIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS  399 (741)
Q Consensus       323 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  399 (741)
                                                .+.-...++..+   ..++..-..++.-+.+.|+.++|.++..+..+.+..|+ 
T Consensus       245 --------------------------~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-  297 (400)
T COG3071         245 --------------------------SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-  297 (400)
T ss_pred             --------------------------chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-
Confidence                                      222233344443   22455566777888889999999999999888877666 


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhcc--CCCchHHHHHHHHHHhc
Q 004632          400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQ--QKSVVMWNSMICGFYQN  477 (741)
Q Consensus       400 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~  477 (741)
                         ...+..+.+.++.+.-++..+...+..+.++..+..+...|.+.+.|.+|...|+...  +++...|+.+..++.+.
T Consensus       298 ---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~  374 (400)
T COG3071         298 ---LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL  374 (400)
T ss_pred             ---HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence               2233456677888888888888888777777777778888888777777777777554  34666677777777777


Q ss_pred             CChHHHHHHHHHHH
Q 004632          478 GNSLEAINLFHQMY  491 (741)
Q Consensus       478 g~~~~A~~~~~~m~  491 (741)
                      |++.+|.+..++..
T Consensus       375 g~~~~A~~~r~e~L  388 (400)
T COG3071         375 GEPEEAEQVRREAL  388 (400)
T ss_pred             CChHHHHHHHHHHH
Confidence            77777777766654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=7.9e-10  Score=99.46  Aligned_cols=263  Identities=11%  Similarity=0.093  Sum_probs=137.3

Q ss_pred             cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCc-ch---hHHHHHHHHHhcCCHHHH
Q 004632          377 KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKD-EF---VQSSLIDMYSKCGFKNLA  452 (741)
Q Consensus       377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~a  452 (741)
                      ..++++|.+.|-+|.+. -+-+..+..++...+.+.|..+.|+++++.+.+...-. ..   +...+..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            56778888888888763 12223334455566777788888888887776654322 11   556677777777777777


Q ss_pred             HHHHHhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccccHHhHHHHHHHH
Q 004632          453 YLLFERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEV----TFLTAIQACSNIGQLEKGKWVHHKL  525 (741)
Q Consensus       453 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~  525 (741)
                      +.+|..+.+.+.   .....|+..|-...+|++|++.-+++.+.+-.+...    .|.-+...+....+.+.|...+.+.
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            777777765322   345556777777777777777777766654443322    2223333333344444444444444


Q ss_pred             HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 004632          526 ISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE--VTF  603 (741)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~  603 (741)
                      .+.+.+ .+..--.+                               .+.+...|+++.|.+.++...+.  .|+.  .+.
T Consensus       207 lqa~~~-cvRAsi~l-------------------------------G~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl  252 (389)
T COG2956         207 LQADKK-CVRASIIL-------------------------------GRVELAKGDYQKAVEALERVLEQ--NPEYLSEVL  252 (389)
T ss_pred             HhhCcc-ceehhhhh-------------------------------hHHHHhccchHHHHHHHHHHHHh--ChHHHHHHH
Confidence            433322 22222233                               34444555555555555555552  2332  244


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004632          604 MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS-MPFPANGSIWGALLNG  676 (741)
Q Consensus       604 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~l~~~  676 (741)
                      ..|..+|.+.|+.++....+.++.+..  +.......+.+.-....-.+.|...+.+ +...|+...+..++..
T Consensus       253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~  324 (389)
T COG2956         253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY  324 (389)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence            444455555555555555555554422  2222223333333223333333333322 2444555555555444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=1.1e-11  Score=110.97  Aligned_cols=223  Identities=11%  Similarity=0.039  Sum_probs=183.4

Q ss_pred             HHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHH-HHHHHHHHHhcC
Q 004632          503 LTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVS-WSAMIDCYGMHG  579 (741)
Q Consensus       503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~  579 (741)
                      ..+.++|.+.|.+.+|...++...+.  .|-+.+|..+...|.+..++..|+.++.+-.+  |..+| ..-+.+.+-..+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence            34556667777777777766665554  34455677777888888888888888887764  54444 445667788889


Q ss_pred             CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHH
Q 004632          580 QLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI  658 (741)
Q Consensus       580 ~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  658 (741)
                      +.++|.++|+...+  ..| +......+...|.-.++.+-|+.+++++++.|+ -++..|..++-+|.-.+++|-++.-|
T Consensus       305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence            99999999999998  455 445666777788889999999999999999986 47889999999999999999999999


Q ss_pred             HhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          659 HSM----P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       659 ~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      ++.    . .....++|.++....+..||+..|...|+-++..+|++...++.|+..-.+.|+.++|..+++.....
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            887    1 23356799999999999999999999999999999999999999999999999999999999988764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=9e-09  Score=93.79  Aligned_cols=215  Identities=14%  Similarity=0.106  Sum_probs=136.9

Q ss_pred             cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-------HHHHHH
Q 004632          514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQ-------LNDAAS  586 (741)
Q Consensus       514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~  586 (741)
                      +-+.|.+++--+.+.-  |  ..-..++-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|+       ..-|.+
T Consensus       269 ngEgALqVLP~L~~~I--P--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq  344 (557)
T KOG3785|consen  269 NGEGALQVLPSLMKHI--P--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ  344 (557)
T ss_pred             CCccHHHhchHHHhhC--h--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence            3455565555444321  1  2222344567889999999999998876444444333333333343       445566


Q ss_pred             HHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCC-
Q 004632          587 LFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFP-  664 (741)
Q Consensus       587 ~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  664 (741)
                      .|+-.-+.+..-|.. --.++..++.-..++++.+-++..+...=..-|...+ .+.++++..|.+.+|.++|-++..+ 
T Consensus       345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~  423 (557)
T KOG3785|consen  345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE  423 (557)
T ss_pred             HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence            665554444443332 3445555666667899999999999884333344444 4889999999999999999998422 


Q ss_pred             -CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCC
Q 004632          665 -ANGSIW-GALLNGCRIHKRIDVMKTIEKELSVTGTNDN-GYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPG  737 (741)
Q Consensus       665 -~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  737 (741)
                       .+..+| ..|.+++...+..+.|-.++-+.  ..|.+. ..+..+++.+++.|.+=-|.+.|..+..  ++|+|+
T Consensus       424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pE  495 (557)
T KOG3785|consen  424 IKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPE  495 (557)
T ss_pred             hhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence             344455 45566678889998887665432  223322 3466778889999999888888887755  445553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.41  E-value=3.2e-07  Score=91.93  Aligned_cols=576  Identities=13%  Similarity=0.078  Sum_probs=278.0

Q ss_pred             HHccCChhhHHHhhccCCCCCccc--hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHH
Q 004632           39 YAEMGSLRSSRLVFDTFKEPDSFM--WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEK  116 (741)
Q Consensus        39 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  116 (741)
                      -.....+.+|+.+++.++..++.+  |..+...|+..|+++.|.++|.+.-         .+.-.|..|.+.|+|++|.+
T Consensus       742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence            334455666666666665544333  4445556666666666666665431         24455666666666666666


Q ss_pred             HHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh
Q 004632          117 VHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDF  196 (741)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  196 (741)
                      +-++.  +|.+.....|.+-..-+-+.|++.+|.+++-.+..|+.     -|..|-+.|..+..+.+.++--...+   .
T Consensus       813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~  882 (1636)
T KOG3616|consen  813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---H  882 (1636)
T ss_pred             HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---h
Confidence            54433  23333344444444555566666666666666655543     34556666666666666554321111   1


Q ss_pred             hhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 004632          197 VTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSG  276 (741)
Q Consensus       197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~  276 (741)
                      .|...+..-+-..|++..|+.-|-+..         -|.+-+++|-..+-+++|.++-..-...+..-.-.++  ++++-
T Consensus       883 dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~fl--waksi  951 (1636)
T KOG3616|consen  883 DTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFL--WAKSI  951 (1636)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHH--HHHhh
Confidence            234444455555666666655443221         2345555666666666666554432222222111222  22222


Q ss_pred             ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHH
Q 004632          277 WFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVI  356 (741)
Q Consensus       277 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  356 (741)
                      --+.|..++++.   |      ....-+...+..+.++-|..+-+...+.    ..+.+...+...+-..|++++|.+.+
T Consensus       952 ggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~----k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen  952 GGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKD----KMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred             CcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhc----cCccchhHHhhhhhhccchhhhhHhh
Confidence            234455555432   1      1122233344555566665555444443    33345556666667778888777766


Q ss_pred             HhcCCCCc--ccHHHHH-----HHHHHcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 004632          357 HAIGERNI--LSWNMLI-----SEYARKG-MSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKI  428 (741)
Q Consensus       357 ~~~~~~~~--~~~~~li-----~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  428 (741)
                      -+...-+.  .+|...+     .-+.+.| ++++|...                      +.+.+++..|.++-+    .
T Consensus      1019 veaiklntynitwcqavpsrfd~e~ir~gnkpe~av~m----------------------fi~dndwa~aervae----~ 1072 (1636)
T KOG3616|consen 1019 VEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEM----------------------FIHDNDWAAAERVAE----A 1072 (1636)
T ss_pred             HHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHH----------------------hhhcccHHHHHHHHH----h
Confidence            55443222  1221111     1122222 23333222                      334445555544322    2


Q ss_pred             cCCcch--hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH--------------
Q 004632          429 DCKDEF--VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYL--------------  492 (741)
Q Consensus       429 ~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--------------  492 (741)
                      ..++..  ++..-.+.....|++..|..++-+..+|+..     ++-|...+.|..|+.+-+...-              
T Consensus      1073 h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~ 1147 (1636)
T KOG3616|consen 1073 HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEA 1147 (1636)
T ss_pred             hChhhhHHHHhhhhhccccccchhhhhhheeecCCCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHH
Confidence            222222  5666667777788888888888887777753     3445666777777766554311              


Q ss_pred             --CCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHH
Q 004632          493 --NCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSW  568 (741)
Q Consensus       493 --~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~  568 (741)
                        .| ......|..-.+-..+.|++.+|...+-+.-+....     -..++.-+     +++|..+--+...  .|....
T Consensus      1148 ~k~g-argvd~fvaqak~weq~gd~rkav~~~lkinrdst~-----nd~l~e~~-----~~kaadl~ikfl~~d~nme~i 1216 (1636)
T KOG3616|consen 1148 LKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTD-----NDALAEHC-----TEKAADLSIKFLMGDENMEVI 1216 (1636)
T ss_pred             Hhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCC-----cHHHHHHH-----HHHHHhhhhhhcCCccchhhH
Confidence              11 111222223333334445555444443333111100     01111111     1111111111111  111222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH---------------HHHHHHcCCCC
Q 004632          569 SAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFY---------------FNAMRIFGVEP  633 (741)
Q Consensus       569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~---------------~~~~~~~~~~~  633 (741)
                      .+...++...|..+.|-+++--+-.         -...+.++++...|.+|.++               +++.++..-+.
T Consensus      1217 ~aa~~al~~~~~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl 1287 (1636)
T KOG3616|consen 1217 GAAGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKL 1287 (1636)
T ss_pred             HhcchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCcc
Confidence            2222223333333333333221110         11233444444455444443               33333311111


Q ss_pred             ----CccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhc-cCCCCchhHHHH
Q 004632          634 ----DLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNG-CRIHKRIDVMKTIEKELSV-TGTNDNGYYTLL  707 (741)
Q Consensus       634 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l  707 (741)
                          ++.. -.-++.+..+++|++|++.-.+-..+|-..-|..+..+ +...|+..+++.++++-=. .+|.|-.+|..+
T Consensus      1288 ~eli~vdv-iaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i 1366 (1636)
T KOG3616|consen 1288 DELIDVDV-IAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLI 1366 (1636)
T ss_pred             ccccchhH-HHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHH
Confidence                1222 23467788888888888888877777776666665544 5778888888888776432 456666666655


Q ss_pred             HH
Q 004632          708 SN  709 (741)
Q Consensus       708 ~~  709 (741)
                      ..
T Consensus      1367 ~e 1368 (1636)
T KOG3616|consen 1367 FE 1368 (1636)
T ss_pred             HH
Confidence            43

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3.4e-09  Score=98.58  Aligned_cols=268  Identities=10%  Similarity=0.022  Sum_probs=176.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004632          435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSM---ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSN  511 (741)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~  511 (741)
                      ....+..++...|+.++|+..|++...-|+.+...|   .-.+.+.|+.+....+...+.... +-....|-.-......
T Consensus       234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~  312 (564)
T KOG1174|consen  234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYD  312 (564)
T ss_pred             HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhh
Confidence            777788888888888888888887766555443332   223456677777777666654421 1222223333334455


Q ss_pred             cccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004632          512 IGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLF  588 (741)
Q Consensus       512 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~  588 (741)
                      .++++.|..+-++.++.+.. +...+-.-..++...|++++|.-.|+....   -+..+|..|+.+|...|++.+|..+-
T Consensus       313 ~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A  391 (564)
T KOG1174|consen  313 EKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA  391 (564)
T ss_pred             hhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence            67777777777777665432 344444444566777888888888876653   35678888888888888888888777


Q ss_pred             HHHHHcCCCCCHHHHHHHH-HHH-hccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 004632          589 KQMLDSGIKPNEVTFMNIL-WAC-SHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM-PFP  664 (741)
Q Consensus       589 ~~~~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~  664 (741)
                      ++..+. +..+..+...+. ..| ....--++|.++++..++  +.|+ ....+.+...+...|..++++.++++. ...
T Consensus       392 n~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~  468 (564)
T KOG1174|consen  392 NWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF  468 (564)
T ss_pred             HHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence            776662 222334544442 222 233345677777777765  3344 455667777888888888888888877 667


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632          665 ANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL  707 (741)
Q Consensus       665 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  707 (741)
                      ||....+.|+..++..+.+++|.+.|..++.++|++..+..-|
T Consensus       469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            7778888888888888888888888888888888877655554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.40  E-value=8.2e-11  Score=111.34  Aligned_cols=194  Identities=16%  Similarity=0.104  Sum_probs=160.1

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 004632          534 IYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWA  609 (741)
Q Consensus       534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~  609 (741)
                      ...+..+...+...|++++|...+++..+  | +...+..+...+...|++++|.+.+++..+.  .| +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence            44566677778888888888888887653  3 4567788888899999999999999999884  44 44577777888


Q ss_pred             HhccCCHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004632          610 CSHSGSVEEGKFYFNAMRIFGV-EPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVM  686 (741)
Q Consensus       610 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a  686 (741)
                      +...|++++|.+.++++.+... +.....+..++.++...|++++|...+++.  ..+.+...+..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999987322 223556777888999999999999999988  3444677888899999999999999


Q ss_pred             HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          687 KTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       687 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ...++++.+..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999888888888999999999999999999888765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.35  E-value=5.1e-07  Score=89.69  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=47.3

Q ss_pred             HHHHHhcCC-HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          674 LNGCRIHKR-IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       674 ~~~~~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +.-+.+-.+ .++|..++.......+++...|..-..+|.+.|++.-|.+.+++...
T Consensus       631 gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~  687 (700)
T KOG1156|consen  631 GEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEG  687 (700)
T ss_pred             hhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence            334444444 57899999999999999999999999999999999999999998866

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.35  E-value=1.4e-10  Score=99.38  Aligned_cols=156  Identities=10%  Similarity=0.010  Sum_probs=75.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632          571 MIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG  649 (741)
Q Consensus       571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  649 (741)
                      |.-.|...|+...|..-+++.++  ..|+.. ++..+...|.+.|..+.|.+.|+++.+.. +-+..+.|..+..+|..|
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence            34444555555555555555555  344332 44444445555555555555555554422 123444445555555555


Q ss_pred             ChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632          650 DIEGAFKMIHSMP----FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       650 ~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                      ++++|...|+++-    .+--..+|.+++.+..+.|+.+.|.+.+++.++.+|+++.....++..++..|++-.|..+++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            5555555555441    111233445555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHh
Q 004632          726 IMEV  729 (741)
Q Consensus       726 ~~~~  729 (741)
                      +...
T Consensus       198 ~~~~  201 (250)
T COG3063         198 RYQQ  201 (250)
T ss_pred             HHHh
Confidence            4444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=4e-08  Score=96.17  Aligned_cols=146  Identities=13%  Similarity=0.087  Sum_probs=84.4

Q ss_pred             cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH--------hcCC--CCHHHHHHHHHHHHhcCCHHH
Q 004632          514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFD--------SMSE--RNVVSWSAMIDCYGMHGQLND  583 (741)
Q Consensus       514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~  583 (741)
                      ...++.+++....+........+.-.+++.....|+++.|.+++.        .+.+  ..+.+...+...+.+.++.+.
T Consensus       356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~  435 (652)
T KOG2376|consen  356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS  435 (652)
T ss_pred             HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence            355566666666555444445555666667777777777777777        3332  233445555556666666666


Q ss_pred             HHHHHHHHHHc--CCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHH
Q 004632          584 AASLFKQMLDS--GIKPNEV----TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKM  657 (741)
Q Consensus       584 A~~~~~~~~~~--~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  657 (741)
                      |..++.+.+.-  .-.+...    ++..+...-.+.|+-++|.++++++.+.. ++|..+...++.+|++. +.+.|..+
T Consensus       436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l  513 (652)
T KOG2376|consen  436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL  513 (652)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence            66666655431  0111112    22333333345577777777777777643 45666777777777664 56777776


Q ss_pred             HHhC
Q 004632          658 IHSM  661 (741)
Q Consensus       658 ~~~~  661 (741)
                      -..+
T Consensus       514 ~k~L  517 (652)
T KOG2376|consen  514 SKKL  517 (652)
T ss_pred             hhcC
Confidence            6666

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.34  E-value=1.6e-07  Score=93.18  Aligned_cols=376  Identities=15%  Similarity=0.124  Sum_probs=195.1

Q ss_pred             HhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632          242 SKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS  318 (741)
Q Consensus       242 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  318 (741)
                      ...|+-++|......-..   .+.+.|..+.-.+-...++++|+..|+.....  .                        
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~------------------------  105 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--E------------------------  105 (700)
T ss_pred             hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--C------------------------
Confidence            344555555554444333   22334555555455555566666666655442  2                        


Q ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCC-
Q 004632          319 VHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWG-  394 (741)
Q Consensus       319 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-  394 (741)
                                 |++..++.-+.-.-++.++++.....-..+.+   ..-..|..++.++.-.|++..|..+++...+.. 
T Consensus       106 -----------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~  174 (700)
T KOG1156|consen  106 -----------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN  174 (700)
T ss_pred             -----------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                       34444444444444444444433333333221   233456667777777777777777777776653 


Q ss_pred             CCCCHHHHHHHHHH------hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc--hH
Q 004632          395 LMPDSFSVASSLSA------CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV--VM  466 (741)
Q Consensus       395 ~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~  466 (741)
                      -.|+...+......      ....|.++.|.+.+......-.+.-.....-...+.+.+++++|..++..+..+++  ..
T Consensus       175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~  254 (700)
T KOG1156|consen  175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD  254 (700)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence            24555555433222      34556666666665544443333333555666777788888888888887776544  33


Q ss_pred             HHH-HHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 004632          467 WNS-MICGFYQNGNSLEAI-NLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY  544 (741)
Q Consensus       467 ~~~-l~~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  544 (741)
                      |.. +..++.+-.+.-+++ .+|....+. .+.....-..-+.......-.+....++..+.+.|+++-.....+   .|
T Consensus       255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Ly  330 (700)
T KOG1156|consen  255 YYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LY  330 (700)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HH
Confidence            332 333333222222333 445444332 111111111111112222333344455666666665543222222   22


Q ss_pred             HhcCCHHH----HHHHHHhcC--------------CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HH
Q 004632          545 AKCGDLQT----AQRVFDSMS--------------ERNVVSW--SAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TF  603 (741)
Q Consensus       545 ~~~g~~~~----A~~~~~~~~--------------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~  603 (741)
                      -.-...+-    +..+...+.              .|....|  -.++..+-..|+++.|+.+++.+++  -.|+.+ -|
T Consensus       331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly  408 (700)
T KOG1156|consen  331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELY  408 (700)
T ss_pred             hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHH
Confidence            11111110    111111111              1333333  3466677788888888888888887  467654 55


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          604 MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       604 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      ..-.+.+...|+.++|..++++..+.. .+|..+-..-+....++++.++|.+++...
T Consensus       409 ~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF  465 (700)
T KOG1156|consen  409 LVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF  465 (700)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence            555667778888888888888887754 355555546666777888888888877766

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.34  E-value=5.5e-10  Score=111.92  Aligned_cols=231  Identities=15%  Similarity=0.190  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHhccccHHhHHHHHHHHHHc-----CC-CCCchh-HHHHHHHHHhcCCHHHHHHHHHhcCC-------CC
Q 004632          499 EVTFLTAIQACSNIGQLEKGKWVHHKLISY-----GV-RKDIYI-DTALTDMYAKCGDLQTAQRVFDSMSE-------RN  564 (741)
Q Consensus       499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~  564 (741)
                      ..+...+...|...|+++.|..+++...+.     |. .|.+.+ .+.+...|...+++++|..+|+++..       ++
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456666777888888888888888776553     21 122222 23466788889999999988888762       21


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHH---cC
Q 004632          565 ----VVSWSAMIDCYGMHGQLNDAASLFKQMLDS-----GIK-PNEV-TFMNILWACSHSGSVEEGKFYFNAMRI---FG  630 (741)
Q Consensus       565 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~  630 (741)
                          ..+++.|...|.+.|++++|..+++++.+-     |.. |... .++.+...|...+++++|..+++...+   .-
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence                347788888999999999998888876641     222 2333 466667789999999999999998877   11


Q ss_pred             CCCC----ccHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 004632          631 VEPD----LQHYACMVDLLSRSGDIEGAFKMIHSM---------PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVT  696 (741)
Q Consensus       631 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  696 (741)
                      +.++    ..+++.|...|...|++++|.++++++         +..+ ....++.+...|.+.+.+++|..+|.+...+
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            2222    467899999999999999999999987         1122 3557888999999999999999998887653


Q ss_pred             ----CCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          697 ----GTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       697 ----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                          +|+.+   ..|..|+.+|-+.|++++|.++.+.+..
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                45544   4699999999999999999999988763

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.34  E-value=2.9e-07  Score=92.24  Aligned_cols=584  Identities=16%  Similarity=0.113  Sum_probs=295.0

Q ss_pred             ccCChhhHHHhhccCCC-CCc-cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHH
Q 004632           41 EMGSLRSSRLVFDTFKE-PDS-FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVH  118 (741)
Q Consensus        41 ~~g~~~~A~~~~~~~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  118 (741)
                      ..|+++.|..+++.... |+. .+|..+...-...|+..-|.+.                      |+..|++..++.++
T Consensus       456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaerc----------------------faai~dvak~r~lh  513 (1636)
T KOG3616|consen  456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERC----------------------FAAIGDVAKARFLH  513 (1636)
T ss_pred             ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHH----------------------HHHHHHHHHHHHHH
Confidence            34667777777666543 443 3455555555555554444433                      33445555555544


Q ss_pred             HHHHH-------hCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC
Q 004632          119 GRIIK-------CGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREG  191 (741)
Q Consensus       119 ~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  191 (741)
                      +...-       .|- .....|......-.-..++.+|..+|-+-     ..-..-|..|..-.+|++|+.+-+.   .|
T Consensus       514 d~~eiadeas~~~gg-dgt~fykvra~lail~kkfk~ae~ifleq-----n~te~aigmy~~lhkwde~i~lae~---~~  584 (1636)
T KOG3616|consen  514 DILEIADEASIEIGG-DGTDFYKVRAMLAILEKKFKEAEMIFLEQ-----NATEEAIGMYQELHKWDEAIALAEA---KG  584 (1636)
T ss_pred             HHHHHHHHHhHhhCC-CCchHHHHHHHHHHHHhhhhHHHHHHHhc-----ccHHHHHHHHHHHHhHHHHHHHHHh---cC
Confidence            43321       111 11223332222223334566776666432     1223345555666677777766543   23


Q ss_pred             CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhc--cCCCCcchHHHHH
Q 004632          192 VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVK--IEKRCTTSWTAMI  269 (741)
Q Consensus       192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li  269 (741)
                      .+.-...-.+.++++...|+-+.|-++-         .+..--.+-|+.|.+.|....|......  ..-.|......+.
T Consensus       585 ~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia  655 (1636)
T KOG3616|consen  585 HPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIA  655 (1636)
T ss_pred             ChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHH
Confidence            3222233344455555555555554431         1111224567778888887777655422  1123444445555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCC-cchHHHHHHHHHHhcCC
Q 004632          270 SCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPE-YDYLGPALIEFYAECGK  348 (741)
Q Consensus       270 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  348 (741)
                      .++.+..-+++|=++|+++..         +...+.++.+-+-+..|.++-+-.    + |. -...-.....-+...|+
T Consensus       656 ~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----f-p~evv~lee~wg~hl~~~~q  721 (1636)
T KOG3616|consen  656 AALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----F-PEEVVKLEEAWGDHLEQIGQ  721 (1636)
T ss_pred             HHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----C-cHHHhhHHHHHhHHHHHHHh
Confidence            556666666666666666532         222333333333334443332211    1 11 11122233334455566


Q ss_pred             hHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 004632          349 MSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKI  428 (741)
Q Consensus       349 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  428 (741)
                      ++.|+..|-+.     ......+.+......+.+|+.+++.+++..  ..+.-|..+...|+..|+++.|+++|...-  
T Consensus       722 ~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~--  792 (1636)
T KOG3616|consen  722 LDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD--  792 (1636)
T ss_pred             HHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc--
Confidence            66666655432     122334556667788888888888777642  223345556666777777777777765321  


Q ss_pred             cCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCC--chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004632          429 DCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKS--VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAI  506 (741)
Q Consensus       429 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll  506 (741)
                            .++-.+.+|.+.|+|+.|.++-.+...|.  ...|-+-..-+-+.|++.+|.++|-.+.    .|+     ..|
T Consensus       793 ------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~ai  857 (1636)
T KOG3616|consen  793 ------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAI  857 (1636)
T ss_pred             ------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHH
Confidence                  34556667777777777777766665553  2344444455556666666666654331    233     223


Q ss_pred             HHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004632          507 QACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAAS  586 (741)
Q Consensus       507 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  586 (741)
                      ..|-+.|..+...++.++-.   ...-..+...+..-|...|++..|..-|-+..     -|.+-+..|...+-|++|.+
T Consensus       858 qmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayr  929 (1636)
T KOG3616|consen  858 QMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYR  929 (1636)
T ss_pred             HHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHH
Confidence            44555555555554443321   11112233344455556666666666554432     24444555555555555554


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 004632          587 LFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN  666 (741)
Q Consensus       587 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  666 (741)
                      +-+.   .| -.|..-....+.+-+-  --+.|.+++.+.   |      ....-++..+..+.++-|+++-+-..-...
T Consensus       930 iakt---eg-g~n~~k~v~flwaksi--ggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~  994 (1636)
T KOG3616|consen  930 IAKT---EG-GANAEKHVAFLWAKSI--GGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM  994 (1636)
T ss_pred             HHhc---cc-cccHHHHHHHHHHHhh--CcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC
Confidence            4321   11 1122222222222221  223445544431   2      122233444566667777666554422233


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH----HHHHhhcC-ChHHHHHHHH
Q 004632          667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL----SNIYAEEG-NWDEFGKVRS  725 (741)
Q Consensus       667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l----~~~~~~~g-~~~~A~~~~~  725 (741)
                      +.+...+...+-..|++++|-+.|-++++++.-|.+.....    ---..+.| +.++|..+|-
T Consensus       995 ~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen  995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred             ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhh
Confidence            34445566667788999999999988888887776543322    11245666 6667776654

>PRK12370 invasion protein regulator; Provisional

Probab=99.33  E-value=4.1e-10  Score=119.27  Aligned_cols=245  Identities=13%  Similarity=0.035  Sum_probs=175.6

Q ss_pred             ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 004632          479 NSLEAINLFHQMYLNCLEMD-EVTFLTAIQACS---------NIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCG  548 (741)
Q Consensus       479 ~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  548 (741)
                      ..++|..+|++..+.  .|+ ...+..+..++.         ..+++++|...++++.+.++. +...+..+...+...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence            356788888877764  444 334444433332         335578899999998887644 6677778888888999


Q ss_pred             CHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 004632          549 DLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFN  624 (741)
Q Consensus       549 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~  624 (741)
                      ++++|...|++..+  | +...+..+...+...|++++|+..++++.+  +.|+.. .+..++..+...|++++|+..++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999998774  4 466788888999999999999999999999  677654 33444555667899999999999


Q ss_pred             HHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632          625 AMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANG-SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      ++.+...+-++..+..++.++...|+.++|...++++ +.+|+. .....+...+...|  +.|...++++.+..-..+.
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~  508 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN  508 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence            9887542224556778888999999999999999988 444443 34455555566666  4777777766654322222


Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          703 YYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       703 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      ....+..+|.-.|+.+.+... +++.+.|
T Consensus       509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            223366778888998888877 7777644

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.31  E-value=2e-07  Score=94.41  Aligned_cols=433  Identities=15%  Similarity=0.094  Sum_probs=227.6

Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHH
Q 004632          227 IKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN-LITLIT  302 (741)
Q Consensus       227 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~  302 (741)
                      +.-|..+|..+.-+..+.|+++.+-+.|++...   .....|+.+...+...|....|+.+++.-......|+ ...+..
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            444556666666666666666666666666543   2233566666666666666666666665443322232 222333


Q ss_pred             HHHHhh-ccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHH-----
Q 004632          303 VLGSCA-GLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYAR-----  376 (741)
Q Consensus       303 ll~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~-----  376 (741)
                      .-+.|. +.+..+++..+-..++.......               ++             .....|..+.-+|..     
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~---------------~~-------------l~~~~~l~lGi~y~~~A~~a  450 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQR---------------SH-------------LKPRGYLFLGIAYGFQARQA  450 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhh---------------hh-------------hhhhHHHHHHHHHHhHhhcC
Confidence            333332 23455555555444444110000               00             011112222111111     


Q ss_pred             ------cCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCC
Q 004632          377 ------KGMSKEALELLVQMQTWG-LMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGF  448 (741)
Q Consensus       377 ------~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~  448 (741)
                            .....++++.+++..+.+ -.|+..-  .+.--++..++++.|.+..++.++.+..+.. .+..++-++...++
T Consensus       451 ~~~seR~~~h~kslqale~av~~d~~dp~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr  528 (799)
T KOG4162|consen  451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR  528 (799)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCCchHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence                  011234555566655542 1222222  2222244556666666666666666444444 66666666666666


Q ss_pred             HHHHHHHHHhccCCCchHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHH
Q 004632          449 KNLAYLLFERIQQKSVVMWNSM---ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKL  525 (741)
Q Consensus       449 ~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  525 (741)
                      +.+|+.+.+.....-...++.+   +..-..-++.++++.....+...  --+...       ....++-....+....+
T Consensus       529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~-------~q~~~~~g~~~~lk~~l  599 (799)
T KOG4162|consen  529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYG-------VQQTLDEGKLLRLKAGL  599 (799)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhh-------Hhhhhhhhhhhhhhccc
Confidence            6666666554433211111111   11111234455555444443321  000000       00001111111111111


Q ss_pred             H--HcCCCCCchhHHHHHHHHHhc---CCHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004632          526 I--SYGVRKDIYIDTALTDMYAKC---GDLQTAQRVFDSMSERN------VVSWSAMIDCYGMHGQLNDAASLFKQMLDS  594 (741)
Q Consensus       526 ~--~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  594 (741)
                      .  .......+.++..+.......   -.++.....+.....|+      ...|......+.+.++.++|...+.+... 
T Consensus       600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-  678 (799)
T KOG4162|consen  600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-  678 (799)
T ss_pred             ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-
Confidence            0  001111222333222222111   11111111111112233      23456666778888999999988888887 


Q ss_pred             CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHH--HHHhC-C-CCCCHH
Q 004632          595 GIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFK--MIHSM-P-FPANGS  668 (741)
Q Consensus       595 ~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~-~-~~~~~~  668 (741)
                       +.|-. ..|......+...|.+++|.+.|......  .|+ +.+..+++.++.+.|+..-|..  ++..+ . .+.+..
T Consensus       679 -~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e  755 (799)
T KOG4162|consen  679 -IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE  755 (799)
T ss_pred             -cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence             55644 46666667888999999999999998874  344 7788899999999998887777  88887 3 456889


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      .|..++..+.+.|+.++|.++|..+.++.+.+|.
T Consensus       756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999999999999887774

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.31  E-value=6.7e-11  Score=106.14  Aligned_cols=236  Identities=14%  Similarity=0.060  Sum_probs=175.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 004632          468 NSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKC  547 (741)
Q Consensus       468 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  547 (741)
                      +.+..+|.+.|.+.+|...++....+  .|-+.||..+-++|.+..++..|..++.+-.+. ++-++.....+...+...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            44556666666666666666665553  344556666666666666666666666655543 223444444555666677


Q ss_pred             CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 004632          548 GDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFN  624 (741)
Q Consensus       548 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  624 (741)
                      ++.++|.++++...+   .++....++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...+++|-++.-|+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            788888888887664   35666667777888889999999999999998865 67788888888899999999999999


Q ss_pred             HHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004632          625 AMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTND  700 (741)
Q Consensus       625 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  700 (741)
                      ++....-.|+  ...|-.+.......|++..|.+.|+-.  ..+.+...+++|.-...+.|+.++|..++..+....|.-
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            9988443344  566777888888999999999999887  456678899999988899999999999999999999986


Q ss_pred             chhHHHH
Q 004632          701 NGYYTLL  707 (741)
Q Consensus       701 ~~~~~~l  707 (741)
                      .+....|
T Consensus       463 ~E~~~Nl  469 (478)
T KOG1129|consen  463 AEVTTNL  469 (478)
T ss_pred             cccccce
Confidence            5544444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.29  E-value=6e-07  Score=93.43  Aligned_cols=357  Identities=12%  Similarity=0.057  Sum_probs=213.4

Q ss_pred             HHHHHHHHhcC---CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 004632          350 SECEKVIHAIG---ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVI  426 (741)
Q Consensus       350 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  426 (741)
                      ..|+..+....   ..+...||.|.-. ...|++.-+...|-+-... -+....+|..+.-.+....+++.|...+....
T Consensus       800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q  877 (1238)
T KOG1127|consen  800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ  877 (1238)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence            35556665543   3455667766554 5556777776666665543 23345566666666788888999999999888


Q ss_pred             HhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhcc-----C---CCchHHHHHHHHHHhcCChHHHHHHHHHHHH------
Q 004632          427 KIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQ-----Q---KSVVMWNSMICGFYQNGNSLEAINLFHQMYL------  492 (741)
Q Consensus       427 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~------  492 (741)
                      ...|.+...+-.........|+.-++..+|..-.     +   ++..-|-....-...+|+.++-+...+.+-.      
T Consensus       878 SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~  957 (1238)
T KOG1127|consen  878 SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS  957 (1238)
T ss_pred             hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence            8888877777666666777787777777776421     1   1212222222233455665554443333221      


Q ss_pred             ---CCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHc-CCCCCchhHH----HHHHHHHhcCCHHHHHHHHHhcCC-C
Q 004632          493 ---NCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISY-GVRKDIYIDT----ALTDMYAKCGDLQTAQRVFDSMSE-R  563 (741)
Q Consensus       493 ---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~-~  563 (741)
                         .+.+.+...|.......-+.+.+..+.+...+++.. ..+.+...|+    .+...+...|.++.|..-+..... .
T Consensus       958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen  958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred             HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence               234455667777777777777777776666554320 0111222333    445566777888877776665542 2


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHH
Q 004632          564 NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV----TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYA  639 (741)
Q Consensus       564 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  639 (741)
                      +...-..-+.. .-.|+++++++.|+++..  +.-+..    ....++.+....+..+.|...+-+..... +|+..+..
T Consensus      1038 dEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll 1113 (1238)
T KOG1127|consen 1038 DEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLL 1113 (1238)
T ss_pred             HHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHH
Confidence            32222222222 345799999999999987  443332    33344445566778888888877777643 45666666


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632          640 CMVDLLSRSGDIEGAFKMIHSMP-------FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA  712 (741)
Q Consensus       640 ~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  712 (741)
                      .+.-.+.-..+-......++++.       +.-.+.....+  .+...|+-....+.+++....+|.++..|..|..-|.
T Consensus      1114 ~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            66555554444443333444431       11111111111  2567889999999999999999999999999986555


Q ss_pred             hc
Q 004632          713 EE  714 (741)
Q Consensus       713 ~~  714 (741)
                      +.
T Consensus      1192 ~~ 1193 (1238)
T KOG1127|consen 1192 QR 1193 (1238)
T ss_pred             HH
Confidence            43

>PRK12370 invasion protein regulator; Provisional

Probab=99.28  E-value=6.8e-10  Score=117.60  Aligned_cols=211  Identities=14%  Similarity=0.063  Sum_probs=166.7

Q ss_pred             ccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH---------hcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCC
Q 004632          513 GQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA---------KCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQ  580 (741)
Q Consensus       513 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~  580 (741)
                      ++.++|...+++..+..+. +...+..+..++.         ..+++++|...+++..+  | +...+..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            4567899999999876543 3445555555443         23458899999998874  3 66788888889999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHH
Q 004632          581 LNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH  659 (741)
Q Consensus       581 ~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  659 (741)
                      +++|...|+++.+  +.|+.. .+..+...+...|++++|...++++.+.... +...+..++..+...|++++|+..++
T Consensus       354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            9999999999999  678654 7777888999999999999999999985422 22333344555677899999999998


Q ss_pred             hC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          660 SM--PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       660 ~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +.  ..+| ++..+..+..++...|++++|...++++....|.+......++..|...|+  +|...++++.+
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            87  3345 455677788888999999999999999998999888889999989998884  88888888766

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=2.1e-07  Score=94.38  Aligned_cols=242  Identities=12%  Similarity=0.079  Sum_probs=142.2

Q ss_pred             CCC-CChhhhHHHHH--HHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhc-C--------C
Q 004632           24 GLH-YDPPASTRLIE--SYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIRE-Q--------A   91 (741)
Q Consensus        24 ~~~-~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~   91 (741)
                      |++ =|+.|-..+++  .|...|+.+.|-+-.+-++  +-..|..|.+.|.+..+.+-|.-.+-.|... |        -
T Consensus       720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            443 36666666654  5777888888877766655  4567999999999998888887777666431 1        1


Q ss_pred             CCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC-CCceeHHHHHHH
Q 004632           92 TISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS-RDVVSWSSIIAS  170 (741)
Q Consensus        92 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~  170 (741)
                      .|+ .+=..+...-...|.+++|+.++.+-.+.         ..|-+.|...|.+++|.++-+.-.+ .=..||......
T Consensus       798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~  867 (1416)
T KOG3617|consen  798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY  867 (1416)
T ss_pred             CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence            122 22122222334668899999998887654         3455778889999999998765443 112355556666


Q ss_pred             HHhCCChhHHHHHHHHhHHC----------C---------CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCch
Q 004632          171 YFDNADVSEGLKMFHSMVRE----------G---------VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDG  231 (741)
Q Consensus       171 ~~~~g~~~~a~~~~~~m~~~----------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  231 (741)
                      +-..++.+.|++.|++....          .         -..|...|..--.-+-..|+.+.|..+|.....       
T Consensus       868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------  940 (1416)
T KOG3617|consen  868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------  940 (1416)
T ss_pred             HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence            66678888888888763211          0         011222222222223334455555554444322       


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004632          232 PLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKM  288 (741)
Q Consensus       232 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  288 (741)
                        |-+++...|-+|+.++|-++-++-  .|..+...+.+.|-..|++.+|+.+|.+.
T Consensus       941 --~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  941 --YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             --hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence              334444555555555555554432  23334555666666666666666666554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.23  E-value=1.1e-07  Score=96.97  Aligned_cols=49  Identities=10%  Similarity=0.010  Sum_probs=42.7

Q ss_pred             HhcCC-HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632          678 RIHKR-IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSI  726 (741)
Q Consensus       678 ~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  726 (741)
                      ....+ .++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus       467 ~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k  516 (517)
T PF12569_consen  467 LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK  516 (517)
T ss_pred             hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence            34444 68999999999999999999999999999999999999887764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.23  E-value=1.2e-09  Score=105.64  Aligned_cols=219  Identities=10%  Similarity=-0.030  Sum_probs=145.0

Q ss_pred             hcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 004632          476 QNGNSLEAINLFHQMYLNC-LEMD--EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQT  552 (741)
Q Consensus       476 ~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  552 (741)
                      ..+..+.++.-+.+++... ..|+  ...|......+...|+.+.|...|++..+..+. +...++.+...+...|++++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence            3466777888888877542 2222  345666667778888888888888888876543 56778888888888888888


Q ss_pred             HHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632          553 AQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       553 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  629 (741)
                      |...|++..+  | +..+|..+..++...|++++|.+.+++..+  ..|+..........+...+++++|...+.+....
T Consensus       117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            8888888763  4 456777788888888888888888888887  5665542222222344567788888888765542


Q ss_pred             CCCCCccHHHHHHHHHHhcCChHHH--HHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          630 GVEPDLQHYACMVDLLSRSGDIEGA--FKMIHSM-PF-----PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       630 ~~~~~~~~~~~l~~~~~~~~~~~~A--~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      . .|+...+ .+.  ....|+..++  ++.+.+. ..     +.....|..++..+.+.|++++|...|+++++.+|.+.
T Consensus       195 ~-~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        195 L-DKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             C-CccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence            2 2332222 222  2334554333  3333222 11     12345777888888888888888888888888887543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.7e-07  Score=87.52  Aligned_cols=301  Identities=9%  Similarity=-0.040  Sum_probs=180.8

Q ss_pred             CCChhhHHHHHHHhh--ccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHH--
Q 004632          294 EPNLITLITVLGSCA--GLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNM--  369 (741)
Q Consensus       294 ~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--  369 (741)
                      .|...+...-+.+++  -.++-..+...+--+......|++......+...+...|+.++|+..|++..--|+.+...  
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD  270 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD  270 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence            333334333444332  2344444445554455555556888888888888888888888888888766443332222  


Q ss_pred             -HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCC
Q 004632          370 -LISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGF  448 (741)
Q Consensus       370 -li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  448 (741)
                       ..-.+.+.|++++...+...+.... .-+...|..-........+++.|..+-++.++.++.....+-.-...+...++
T Consensus       271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R  349 (564)
T KOG1174|consen  271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER  349 (564)
T ss_pred             HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc
Confidence             2233456777777777777766531 12223333333334566778888888888888777777777677777777888


Q ss_pred             HHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-hccccHHhHHHHHH
Q 004632          449 KNLAYLLFERIQQ--K-SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAI-QAC-SNIGQLEKGKWVHH  523 (741)
Q Consensus       449 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll-~~~-~~~~~~~~a~~~~~  523 (741)
                      .++|.-.|+....  | +..+|.-++.+|...|++.+|..+-+...+. .+.+..+.+.+. ..| ....-.++|..+++
T Consensus       350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e  428 (564)
T KOG1174|consen  350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE  428 (564)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence            8888877776543  2 5577888888888888888877666554432 233444444432 222 22333455666666


Q ss_pred             HHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004632          524 KLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS--ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN  599 (741)
Q Consensus       524 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~  599 (741)
                      ......+. -....+.+.+.+...|+..++..++++..  .||....+.|...+...+.+.+|++.|..+..  +.|+
T Consensus       429 k~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~  503 (564)
T KOG1174|consen  429 KSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK  503 (564)
T ss_pred             hhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence            55443221 12233455556666666666666666655  36666666666666666666666666666666  4554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=4.3e-09  Score=99.48  Aligned_cols=199  Identities=12%  Similarity=0.128  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 004632          465 VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY  544 (741)
Q Consensus       465 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  544 (741)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+...              
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------   96 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--------------   96 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------------
Confidence            345555556666666666666666655432 22233344444444444444444444444443321              


Q ss_pred             HhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 004632          545 AKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYF  623 (741)
Q Consensus       545 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  623 (741)
                                        .+...+..+...+...|++++|.+.++++.+....|. ...+..+...+...|++++|...+
T Consensus        97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (234)
T TIGR02521        97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL  158 (234)
T ss_pred             ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence                              2333455555555666666666666666655322222 234445555666667777777777


Q ss_pred             HHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 004632          624 NAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG  697 (741)
Q Consensus       624 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  697 (741)
                      ++..+.. +.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|+.++|..+.+.+....
T Consensus       159 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       159 TRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            6666532 223445666666666777777777666665 1 23344555555566666777777777666665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.20  E-value=3.6e-11  Score=80.12  Aligned_cols=50  Identities=30%  Similarity=0.548  Sum_probs=45.8

Q ss_pred             CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcc
Q 004632          159 RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGE  208 (741)
Q Consensus       159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  208 (741)
                      ||..+||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78889999999999999999999999999999999999999999988874

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.17  E-value=1e-08  Score=88.26  Aligned_cols=189  Identities=13%  Similarity=0.056  Sum_probs=142.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 004632          539 ALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSG  614 (741)
Q Consensus       539 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~  614 (741)
                      .+.-.|...|+...|..-+++..+  | +..+|..+...|-+.|..+.|.+.|+++.+  +.|+. ...|.....+|..|
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence            345567788888888888887774  3 345777788888888888888888888888  67754 46777777788888


Q ss_pred             CHHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004632          615 SVEEGKFYFNAMRIF-GVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEK  691 (741)
Q Consensus       615 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  691 (741)
                      ++++|...|+++... ...-...+|..++-+..+.|+.+.|.+.|++.  -.+..+.....+.....+.|++..|...++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            888888888888772 22233567888888888888888888888887  344456677778888888888888888888


Q ss_pred             HHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          692 ELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       692 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +.....+.+...+-..+.+-...||.+.|.++=.++.+
T Consensus       198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            88888777777777777777778888877766555544

>PF13041 PPR_2: PPR repeat family

Probab=99.16  E-value=1.3e-10  Score=77.33  Aligned_cols=50  Identities=30%  Similarity=0.564  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004632          563 RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSH  612 (741)
Q Consensus       563 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~  612 (741)
                      ||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78888999999999999999999999999999999999999999888864

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=1e-06  Score=89.68  Aligned_cols=239  Identities=13%  Similarity=0.102  Sum_probs=150.1

Q ss_pred             ChhhhhHHH--HHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHC-C--------CCCChh
Q 004632          129 DDVIQTSIL--CTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVRE-G--------VEPDFV  197 (741)
Q Consensus       129 ~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~~~~~  197 (741)
                      |..+...++  +.|..-|+.+.|.+-++.+.  +...|..|.+.+.+..+.+-|.-.+-.|... |        -.|+ .
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e  801 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E  801 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence            444555554  35667788888877766654  3457888888888888888887777666442 1        1122 2


Q ss_pred             hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHHHHhcC
Q 004632          198 TMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKR-CTTSWTAMISCYNRSG  276 (741)
Q Consensus       198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~  276 (741)
                      +-..+.-.....|.+++|+.+|.+-.+.         ..|-..|-..|.+++|.++-+.-..- -..+|......+-..+
T Consensus       802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~  872 (1416)
T KOG3617|consen  802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR  872 (1416)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence            2222222334678888888888877654         33445677788899988887653331 1235666666677777


Q ss_pred             ChhHHHHHHHHHH----------HCC---------CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHH
Q 004632          277 WFQKALESFVKML----------EVK---------EEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGP  337 (741)
Q Consensus       277 ~~~~a~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  337 (741)
                      +.+.|++.|++..          ...         -..|...|..-...+...|+.+.|+.+|+...+          +-
T Consensus       873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~f  942 (1416)
T KOG3617|consen  873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YF  942 (1416)
T ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hh
Confidence            8888887776531          110         123444555555555666777777777654443          23


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHH
Q 004632          338 ALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQ  391 (741)
Q Consensus       338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  391 (741)
                      .++++.+-.|+.++|..+-++-  .|....-.+.+.|-..|++.+|..+|.+.+
T Consensus       943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4555566677777777666553  255566667788888888888888887765

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.15  E-value=2.7e-08  Score=100.01  Aligned_cols=198  Identities=11%  Similarity=0.108  Sum_probs=125.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHH-----CC-CCC-CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHH
Q 004632          469 SMICGFYQNGNSLEAINLFHQMYL-----NC-LEM-DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALT  541 (741)
Q Consensus       469 ~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  541 (741)
                      .+...|...+++.+|..+|+++..     .| ..| -..++..+...|.+.|++++|...++...+              
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------  311 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------  311 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence            455567777777777777777653     11 111 123444445555666666655555544422              


Q ss_pred             HHHHhcCCHHHHHHHHHhcC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHH
Q 004632          542 DMYAKCGDLQTAQRVFDSMS---ERNV-VSWSAMIDCYGMHGQLNDAASLFKQMLDS---GIKPNE----VTFMNILWAC  610 (741)
Q Consensus       542 ~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~----~~~~~ll~~~  610 (741)
                                    ++++..   .|.+ ..++.++..+...+++++|..++++..+.   -+.++.    .++..|...|
T Consensus       312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~  377 (508)
T KOG1840|consen  312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY  377 (508)
T ss_pred             --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence                          111100   1222 13445556667777777777777765542   122222    3788888899


Q ss_pred             hccCCHHHHHHHHHHHHHc----CC--CC-CccHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCCHHHHHHHH
Q 004632          611 SHSGSVEEGKFYFNAMRIF----GV--EP-DLQHYACMVDLLSRSGDIEGAFKMIHSM--------P-FPANGSIWGALL  674 (741)
Q Consensus       611 ~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~-~~~~~~~~~~l~  674 (741)
                      ...|++++|.+++++++..    +.  .+ ....++.+...|.+.+++.+|.++|.+.        + .+....+|..|.
T Consensus       378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~  457 (508)
T KOG1840|consen  378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA  457 (508)
T ss_pred             HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            9999999999999888762    11  11 2456778888898888888888888776        2 223355788999


Q ss_pred             HHHHhcCCHHHHHHHHHHHh
Q 004632          675 NGCRIHKRIDVMKTIEKELS  694 (741)
Q Consensus       675 ~~~~~~g~~~~a~~~~~~~~  694 (741)
                      ..|...|+++.|.++.+++.
T Consensus       458 ~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  458 ALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHcccHHHHHHHHHHHH
Confidence            99999999999999988877

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2.6e-07  Score=89.77  Aligned_cols=86  Identities=13%  Similarity=0.035  Sum_probs=50.3

Q ss_pred             HHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-cccHHHHHHHHHHcCCch
Q 004632          305 GSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE--RN-ILSWNMLISEYARKGMSK  381 (741)
Q Consensus       305 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~  381 (741)
                      .+....|+++.|...|.+.+..  .|.+...+..-..+|.+.|++++|.+--.+-.+  |+ ...|+....++.-.|+++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence            3445567777777777666543  356666666666666666666666554443322  22 234666666666666666


Q ss_pred             HHHHHHHHHHH
Q 004632          382 EALELLVQMQT  392 (741)
Q Consensus       382 ~a~~~~~~m~~  392 (741)
                      +|+.-|.+-++
T Consensus        88 eA~~ay~~GL~   98 (539)
T KOG0548|consen   88 EAILAYSEGLE   98 (539)
T ss_pred             HHHHHHHHHhh
Confidence            66666666554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.11  E-value=3.8e-08  Score=95.15  Aligned_cols=213  Identities=14%  Similarity=0.042  Sum_probs=142.3

Q ss_pred             ccHHhHHHHHHHHHHcC-CCC--CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHH
Q 004632          513 GQLEKGKWVHHKLISYG-VRK--DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAAS  586 (741)
Q Consensus       513 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~  586 (741)
                      +..+.+..-+.++.... ..|  ....+..+...|...|+.++|...|++..+  | +...|+.+...+...|++++|..
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            34555666666665422 122  234566777788888999999988887763  3 56788888888999999999999


Q ss_pred             HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 004632          587 LFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PF  663 (741)
Q Consensus       587 ~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~  663 (741)
                      .|++..+  +.|+. .++..+..++...|++++|.+.+++..+..  |+..........+...++.++|...+++.  ..
T Consensus       120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            9999988  67764 477777778888899999999999888743  33322222223344567889998888665  22


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHH--HHHHHH----HhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632          664 PANGSIWGALLNGCRIHKRIDVM--KTIEKE----LSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       664 ~~~~~~~~~l~~~~~~~g~~~~a--~~~~~~----~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  732 (741)
                      +|+...+   .......|+...+  .+.+.+    ..++.|+.+.+|..|+.+|.+.|++++|+..|++..+.++
T Consensus       196 ~~~~~~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        196 DKEQWGW---NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CccccHH---HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3332222   2222334444332  222222    2244566677899999999999999999999998876543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.10  E-value=3.1e-06  Score=88.38  Aligned_cols=577  Identities=12%  Similarity=0.049  Sum_probs=286.3

Q ss_pred             hhhhHHHHHhHhcCChhHHHHHHccCCC---CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHH--HHH
Q 004632          131 VIQTSILCTYGEFGCLDDARKVFDKMTS---RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSL--AEA  205 (741)
Q Consensus       131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~  205 (741)
                      ..|..|-..|....|...|.+.|++..+   .+..++....+.|++..+++.|..+.-..-+.. +.-...++..  --.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence            3666777777777788888888887765   345577778888888888888888743332221 1111112222  222


Q ss_pred             hcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc-hHHH--HHHHHHhcCChhHHH
Q 004632          206 CGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTT-SWTA--MISCYNRSGWFQKAL  282 (741)
Q Consensus       206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~--li~~~~~~~~~~~a~  282 (741)
                      +-..++...+..-++...+..+ .|...|..+..+|.++|++..|.++|.+...-++. .|..  ..-..+..|++.+|+
T Consensus       572 yLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            3456677777766666666543 36778888999999999999999999776553333 2222  223356678888888


Q ss_pred             HHHHHHHHC------CCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC------CCcchHHHHHHHHHHhcCChH
Q 004632          283 ESFVKMLEV------KEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMG------PEYDYLGPALIEFYAECGKMS  350 (741)
Q Consensus       283 ~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~  350 (741)
                      +.+......      +..--..++......+...|-...+..+++.-++.-..      .++...|..+.          
T Consensus       651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------  720 (1238)
T KOG1127|consen  651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------  720 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------
Confidence            888776542      11222233333333333334444444444333221100      01222221111          


Q ss_pred             HHHHHHHhcCCCCccc--HHHHHHH-HHHcCCc---h---HHHHHHHHHHHCCCCCCHHHHHHHHHH-------hhccC-
Q 004632          351 ECEKVIHAIGERNILS--WNMLISE-YARKGMS---K---EALELLVQMQTWGLMPDSFSVASSLSA-------CGNVG-  413 (741)
Q Consensus       351 ~A~~~~~~~~~~~~~~--~~~li~~-~~~~~~~---~---~a~~~~~~m~~~g~~p~~~~~~~ll~~-------~~~~~-  413 (741)
                      .|-.+|-.+. |+.+.  +..++.. .-..+..   |   -+.+.+-.-..  ...+..++..+...       +...+ 
T Consensus       721 dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~  797 (1238)
T KOG1127|consen  721 DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMK  797 (1238)
T ss_pred             HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcch
Confidence            1112222222 22111  1111111 1111111   1   00011110000  11112222222221       11122 


Q ss_pred             ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004632          414 SLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQM  490 (741)
Q Consensus       414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  490 (741)
                      +...|...+...++........++.|.-. .-.|.+.-+...|-+-..   .+..+|..+...+.++.+++.|...|...
T Consensus       798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~  876 (1238)
T KOG1127|consen  798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSV  876 (1238)
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhh
Confidence            22356666666666666655566666555 444566666655544332   24455666666666777777777777766


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHH----HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC----
Q 004632          491 YLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLI----SYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE----  562 (741)
Q Consensus       491 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----  562 (741)
                      +.. .+.+...|..........|+.-+...+|..-.    ..|-.++...+.+........|+.++-+...+++..    
T Consensus       877 qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a  955 (1238)
T KOG1127|consen  877 QSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA  955 (1238)
T ss_pred             hhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence            553 12234444444444444555555555555421    122233333333333334455555544444443331    


Q ss_pred             --------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHHHH
Q 004632          563 --------R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDS-GIKPNEVTFM----NILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       563 --------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                              | +...|.+.....-+.+.+..|.+...+.+.- ...-+...|+    .+.+.++..|.++.|..-+.....
T Consensus       956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen  956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred             HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence                    2 3445666665555666666666665554321 0112233333    233345556666655443322111


Q ss_pred             cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 004632          629 FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM----PFPAN-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY  703 (741)
Q Consensus       629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  703 (741)
                         ..+..+-..-+.. .-.++++++.+.|+++    ....+ ......++.....++..+.|...+-+...+.|.....
T Consensus      1036 ---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~s 1111 (1238)
T KOG1127|consen 1036 ---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASS 1111 (1238)
T ss_pred             ---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhh
Confidence               0111111111111 2346777888888777    22222 2344555555667777778888777777777777777


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          704 YTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       704 ~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      ...|.-++.-..+...-....+++.
T Consensus      1112 ll~L~A~~ild~da~~ssaileel~ 1136 (1238)
T KOG1127|consen 1112 LLPLPAVYILDADAHGSSAILEELE 1136 (1238)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            7777666665555554444444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=8.1e-08  Score=93.21  Aligned_cols=373  Identities=13%  Similarity=0.065  Sum_probs=222.2

Q ss_pred             HHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCh
Q 004632          340 IEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS-FSVASSLSACGNVGSL  415 (741)
Q Consensus       340 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~  415 (741)
                      .......|+++.|...|-+..   ++|-+.|..-..+|...|++++|++=-.+-++  +.|+. ..|.....++.-.|++
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence            456678899999999998754   45777888899999999999999988777766  57775 4688888889999999


Q ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHH------HhccC-C------CchHHHHHHHHHHhc-----
Q 004632          416 QLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLF------ERIQQ-K------SVVMWNSMICGFYQN-----  477 (741)
Q Consensus       416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~-~------~~~~~~~l~~~~~~~-----  477 (741)
                      ++|+.-|...++..+....+...+..++.....   +...|      ..+.. |      ....|..++..+-+.     
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            999999999999999998888888888822111   11111      11110 0      011222222222110     


Q ss_pred             -----CChHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHhccccHHhH
Q 004632          478 -----GNSLEAINLFHQ-----MYLNC-------LEM------------D----------EVTFLTAIQACSNIGQLEKG  518 (741)
Q Consensus       478 -----g~~~~A~~~~~~-----m~~~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a  518 (741)
                           .+...+...+..     +...+       ..|            |          ..-...+.++..+..+++.+
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                 001111111100     00000       111            0          01133455555666677777


Q ss_pred             HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHH-------HHHHHHHHhcCCHHHHHHHH
Q 004632          519 KWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERN---VVSW-------SAMIDCYGMHGQLNDAASLF  588 (741)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-------~~l~~~~~~~~~~~~A~~~~  588 (741)
                      .+-+....+..  .++.-++....+|...|.............+..   ..-|       ..+..+|.+.++++.++..|
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            77777766654  355555666666777777666666555544311   1112       22333555667777777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC
Q 004632          589 KQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPAN  666 (741)
Q Consensus       589 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~  666 (741)
                      ++.......|+..+         +....+++........-.+... ..-...-+..+.+.|++..|+..|.++  ..|.|
T Consensus       322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D  391 (539)
T KOG0548|consen  322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED  391 (539)
T ss_pred             HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence            77665444443221         1122233333333222211111 111122255566777777777777776  34556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ...|.+...++.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++.++
T Consensus       392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667777777777777777777777777777777777777777777777777777777775544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=4e-07  Score=81.31  Aligned_cols=182  Identities=13%  Similarity=0.065  Sum_probs=106.1

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 004632          541 TDMYAKCGDLQTAQRVFDSMSE-----RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSG  614 (741)
Q Consensus       541 ~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~  614 (741)
                      ...+.+.|+++.|.+.+..|..     -|++|...+.-.- ..+++.+..+-+.-+.+  +.| ...||..++-.||+..
T Consensus       248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNe  324 (459)
T KOG4340|consen  248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNE  324 (459)
T ss_pred             hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhH
Confidence            3345678999999999999983     4677766554322 23455555555666666  455 3458999999999998


Q ss_pred             CHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHh-cCChHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCC---HHHHH
Q 004632          615 SVEEGKFYFNAMRIFGV-EPDLQHYACMVDLLSR-SGDIEGAFKMIHSMPFPANGSIWGALLNG--CRIHKR---IDVMK  687 (741)
Q Consensus       615 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~---~~~a~  687 (741)
                      -++.|-.++.+=-..-. -.+...|+ |++++.. .-..++|.+-++.+...-........+..  -...++   ...+.
T Consensus       325 yf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai  403 (459)
T KOG4340|consen  325 YFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV  403 (459)
T ss_pred             HHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            88888887764322100 12334444 3444443 34667777666655110000111111111  111222   22334


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          688 TIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +-+++.+++.   -.+....+++|++..|+..+.+.|..-.+
T Consensus       404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            4445544443   22677889999999999999999987655

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=8e-09  Score=100.87  Aligned_cols=214  Identities=14%  Similarity=0.063  Sum_probs=161.5

Q ss_pred             hccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHH
Q 004632          510 SNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAAS  586 (741)
Q Consensus       510 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~  586 (741)
                      .+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+..+   .|......|.-.|...|.-..|++
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            4566666776677766665533 556666666666667777777777777664   355677777778888888888888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChHHH
Q 004632          587 LFKQMLDSGIKPNEVTFMNIL-----------WACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGA  654 (741)
Q Consensus       587 ~~~~~~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A  654 (741)
                      .+++-+..  .|...   .+.           ........+....++|-++.. .+..+|+.+...|+-.|.-.|++++|
T Consensus       375 ~L~~Wi~~--~p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  375 MLDKWIRN--KPKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHh--Cccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            88887663  22111   010           112222334455566666555 55558889999999999999999999


Q ss_pred             HHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          655 FKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       655 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +..|+.+  ..|.|...|+.|+..+....+.++|+..|.+++++.|....+.+.|+-.|+..|.|++|.+.|=..+.
T Consensus       450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9999998  44557889999999999999999999999999999999999999999999999999999999877655

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.02  E-value=7.3e-07  Score=81.38  Aligned_cols=315  Identities=11%  Similarity=0.029  Sum_probs=200.5

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH---HHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHh
Q 004632          369 MLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSL---SACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSK  445 (741)
Q Consensus       369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  445 (741)
                      -+...+...|++.+|+.-|....+.    |+..|..+.   ..|...|+-.-|..-+..+++..|+...+.-.-...+.+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            3455566667777777776666542    333333333   235566666666666666666666655555555556666


Q ss_pred             cCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHH
Q 004632          446 CGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKL  525 (741)
Q Consensus       446 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  525 (741)
                      .|.++.|..-|+.+.+.++.- +....++.+.       ...+++         ......+..+...|+...|+.....+
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl-------~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~l  181 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSKL-------ALIQEH---------WVLVQQLKSASGSGDCQNAIEMITHL  181 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCc-chhHHHHHHH-------HhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHHH
Confidence            666766666666665443310 0000111110       001111         11222334455677888888888877


Q ss_pred             HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 004632          526 ISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS---ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-  601 (741)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-  601 (741)
                      .+.. +-|...+..-..+|...|++..|+.-++...   ..+..++--+-..+...|+.+.++...++.++  +.||.. 
T Consensus       182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~  258 (504)
T KOG0624|consen  182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL  258 (504)
T ss_pred             HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence            7753 3466777777888888888888877666544   45666666667777788888888888888888  778753 


Q ss_pred             ---HHHHH---------HHHHhccCCHHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 004632          602 ---TFMNI---------LWACSHSGSVEEGKFYFNAMRIFGVEPD---LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA  665 (741)
Q Consensus       602 ---~~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~  665 (741)
                         .|..+         +......++|.++++-.+...+......   ...+..+-.++...|++-+|++...++ ...|
T Consensus       259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~  338 (504)
T KOG0624|consen  259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP  338 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence               12211         1134556788888888888877443312   334556667777888999999988887 5555


Q ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632          666 N-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL  707 (741)
Q Consensus       666 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  707 (741)
                      + ..++..-..++.-...++.|+.-|+++.+.+|+|..+-.-+
T Consensus       339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            4 77888888888888899999999999999999887664444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.01  E-value=1.6e-08  Score=95.95  Aligned_cols=247  Identities=9%  Similarity=0.003  Sum_probs=100.2

Q ss_pred             HHhcCCHHHHHHHHHhccCCCc----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhH
Q 004632          443 YSKCGFKNLAYLLFERIQQKSV----VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKG  518 (741)
Q Consensus       443 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  518 (741)
                      +.-.|.+..++.-.+ ....+.    ....-+.+++...|+++.++.-   +... ..|.......+...+...++.+.+
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~-~~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---IKKS-SSPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---hccC-CChhHHHHHHHHHHHhCccchHHH
Confidence            334566666664444 221111    2233345556666665543322   2222 244444444444444333333333


Q ss_pred             HHHHHHHHHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004632          519 KWVHHKLISYGVR-KDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK  597 (741)
Q Consensus       519 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  597 (741)
                      ..-++........ .+..........+...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+  +.
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~  161 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID  161 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence            3333322211111 11111222223334455555555555443  3334444445555555555555555555554  23


Q ss_pred             CCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHH
Q 004632          598 PNEVTFMNILWACS----HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWG  671 (741)
Q Consensus       598 p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~  671 (741)
                      .|.. ...+..++.    ..+.+.+|..+|+++.+ .+.+++.+.+.++.+....|++++|.+.+++.  ..+.++.++.
T Consensus       162 eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La  239 (290)
T PF04733_consen  162 EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA  239 (290)
T ss_dssp             CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred             CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence            3322 222222221    11234555555555433 22344444555555555555555555555444  2233444444


Q ss_pred             HHHHHHHhcCCH-HHHHHHHHHHhccCCCC
Q 004632          672 ALLNGCRIHKRI-DVMKTIEKELSVTGTND  700 (741)
Q Consensus       672 ~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~  700 (741)
                      +++.+....|+. +.+.+.+.++....|+.
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            444444444444 44444555554455543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.00  E-value=3.4e-06  Score=77.14  Aligned_cols=304  Identities=13%  Similarity=0.098  Sum_probs=198.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHH---HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH-HHHh
Q 004632          334 YLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLI---SEYARKGMSKEALELLVQMQTWGLMPDSFSVASS-LSAC  409 (741)
Q Consensus       334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~  409 (741)
                      .-...+...+...|++.+|..-|....+.|+..|.++.   ..|...|+...|+.-+.+..+  .+||...-..- ...+
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence            33344566677778888888888888877777776664   467888888888888888876  57776543322 2236


Q ss_pred             hccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004632          410 GNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQ  489 (741)
Q Consensus       410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  489 (741)
                      .+.|.++.|..-|+.+++..+......    ..+.+.-..++-..            .-..+..+...|+...|+..+..
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~----eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~  180 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGLVL----EAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITH  180 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcchhH----HHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHH
Confidence            788999999999999988887543311    11111111111111            11223344456666777777666


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHH-
Q 004632          490 MYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVV-  566 (741)
Q Consensus       490 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-  566 (741)
                      +++- .+-|...+..-..+|...|.+..|+.=++...+.... +...+.-+-..+...|+.+.++..+++..+  ||.. 
T Consensus       181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence            6653 2345555566666666777777766666555544322 344444555666677777777777766654  3321 


Q ss_pred             ---HHHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H---HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632          567 ---SWSAM---------IDCYGMHGQLNDAASLFKQMLDSGIKPNE--V---TFMNILWACSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       567 ---~~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~  629 (741)
                         .|..+         +......++|.++++..+...+.  .|..  .   .+..+-.++...+++.+|++...+++. 
T Consensus       259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~-  335 (504)
T KOG0624|consen  259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD-  335 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence               12111         12345677888899988888884  5542  2   344555677888999999999999987 


Q ss_pred             CCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          630 GVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       630 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                       +.|+ +.++-.-..+|.-...+++|+.-|+.+
T Consensus       336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A  367 (504)
T KOG0624|consen  336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA  367 (504)
T ss_pred             -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             4455 788888888999999999999999998

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.99  E-value=1.4e-06  Score=89.12  Aligned_cols=125  Identities=16%  Similarity=0.102  Sum_probs=70.0

Q ss_pred             HHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcC
Q 004632          503 LTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHG  579 (741)
Q Consensus       503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~  579 (741)
                      ..+...+...|++++|.++.+..+++.+. .+..|..-...+-..|++.+|.+.++...+   .|...-+..+..+.+.|
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            34445555666666666666666665322 245555566666666666666666666554   23344444555666666


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHhccCCHHHHHHHHHHHHH
Q 004632          580 QLNDAASLFKQMLDSGIKPNEV------TF--MNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       580 ~~~~A~~~~~~~~~~~~~p~~~------~~--~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      ++++|.+++......+..|-..      .|  .....+|.+.|++..|++.|..+.+
T Consensus       277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6666666666665554433211      11  2223356666666666665555544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.97  E-value=1.6e-06  Score=87.63  Aligned_cols=292  Identities=11%  Similarity=0.005  Sum_probs=167.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhccC---CCchH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004632          435 VQSSLIDMYSKCGFKNLAYLLFERIQQ---KSVVM---WNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQA  508 (741)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~  508 (741)
                      .+..+...+...|+.+.+...+....+   .+...   .......+...|++++|...+++..... +.+...+.. ...
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~   85 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence            444455555555555554444433321   11111   1122334556788888888888877652 223333331 112


Q ss_pred             Hh----ccccHHhHHHHHHHHHHcCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCC
Q 004632          509 CS----NIGQLEKGKWVHHKLISYGVRKD-IYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQ  580 (741)
Q Consensus       509 ~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~  580 (741)
                      +.    ..+..+.+.+.+..  .....|+ ......+...+...|++++|...+++..+   .+...+..+...+...|+
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence            22    23444444444433  1111222 23334555677888999999998888774   345677788888889999


Q ss_pred             HHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCccHH-H--HHHHHHHhcCChHH
Q 004632          581 LNDAASLFKQMLDSGI-KPNE--VTFMNILWACSHSGSVEEGKFYFNAMRIFGV-EPDLQHY-A--CMVDLLSRSGDIEG  653 (741)
Q Consensus       581 ~~~A~~~~~~~~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~  653 (741)
                      +++|...+++..+... .|+.  ..|..+...+...|++++|..+++++..... .+..... +  .+...+...|..+.
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            9999999998887321 1222  2345677788889999999999998865322 1111111 1  22333334443333


Q ss_pred             HHHH--H-HhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---------CchhHHHHHHHHhhcCCh
Q 004632          654 AFKM--I-HSM-PF-PA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN---------DNGYYTLLSNIYAEEGNW  717 (741)
Q Consensus       654 A~~~--~-~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~  717 (741)
                      +.+.  + ... +. +.  ..........++...|+.++|...++.+....-.         ........+.++...|++
T Consensus       244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~  323 (355)
T cd05804         244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY  323 (355)
T ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence            3222  1 111 11 11  1122235666678899999999999887653211         334566778889999999


Q ss_pred             HHHHHHHHHHHhC
Q 004632          718 DEFGKVRSIMEVT  730 (741)
Q Consensus       718 ~~A~~~~~~~~~~  730 (741)
                      ++|.+.+......
T Consensus       324 ~~A~~~L~~al~~  336 (355)
T cd05804         324 ATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887663

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=5.5e-07  Score=80.48  Aligned_cols=351  Identities=12%  Similarity=0.073  Sum_probs=217.6

Q ss_pred             hCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 004632           23 TGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYP   99 (741)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~   99 (741)
                      +|+.--..-+.+.+.-+.+..++.+|.+++....+  | +....+.+..+|....++..|-..++++-...  |...-|.
T Consensus         4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYr   81 (459)
T KOG4340|consen    4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYR   81 (459)
T ss_pred             ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHH
Confidence            34444444566778888899999999999987654  4 55667888889999999999999999987653  3333332


Q ss_pred             H-HHHHhhcCCChhhHHHHHHHHHHhCCCCChh--hhhHHHHHhHhcCChhHHHHHHccCCC-CCceeHHHHHHHHHhCC
Q 004632          100 S-VLRACSSLGDLGSGEKVHGRIIKCGFDKDDV--IQTSILCTYGEFGCLDDARKVFDKMTS-RDVVSWSSIIASYFDNA  175 (741)
Q Consensus       100 ~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g  175 (741)
                      . -...+-+.+.+..|.++...|...   +...  ....-....-..+|+..+..++++.+. .+..+.+-......+.|
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG  158 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence            2 245666778999999999888543   2111  111111223457899999999999984 66667777777778999


Q ss_pred             ChhHHHHHHHHhHHC-CCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHH----HHHHHHHHhcCCHHHH
Q 004632          176 DVSEGLKMFHSMVRE-GVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLG----NSFIVMYSKCGDLLSA  250 (741)
Q Consensus       176 ~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A  250 (741)
                      +++.|++-|+...+- |..| ...|+..+.. .+.|+.+.|.+..++++++|++..+..-    ...++.-.-.+-..-+
T Consensus       159 qyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh  236 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH  236 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence            999999999998775 5555 4567666644 4678999999999999999875332211    0001000000000000


Q ss_pred             HHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC
Q 004632          251 ERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEV-KEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMG  329 (741)
Q Consensus       251 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  329 (741)
                      +.-       -+..+|.-...+.+.|+++.|.+.+..|... ....|+.|.+.+.-.-. .++......-+.-+...  .
T Consensus       237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--n  306 (459)
T KOG4340|consen  237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--N  306 (459)
T ss_pred             HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--C
Confidence            000       0112444445566778888888888777543 23456667665533222 23333333333334433  3


Q ss_pred             CCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCC-----cccHHHHHHHHH-HcCCchHHHHHHHHHH
Q 004632          330 PEYDYLGPALIEFYAECGKMSECEKVIHAIGERN-----ILSWNMLISEYA-RKGMSKEALELLVQMQ  391 (741)
Q Consensus       330 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~-~~~~~~~a~~~~~~m~  391 (741)
                      |-...++..++-.|+++.-++.|.+++.+-..-+     ...|+. ++++. ..-.++++.+-++.+.
T Consensus       307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  307 PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence            5566777788888888888888888877654322     222332 33332 2345566665555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.93  E-value=7.7e-08  Score=91.32  Aligned_cols=245  Identities=11%  Similarity=0.042  Sum_probs=155.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 004632          472 CGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQ  551 (741)
Q Consensus       472 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  551 (741)
                      +-+.-.|++..++.-.+ ........+......+.+++...|+.+.+.   ..+.+. ..|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence            34455788888886655 222222223344556667777777766433   333332 2566666655555554445666


Q ss_pred             HHHHHHHhcC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 004632          552 TAQRVFDSMS-ER----NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAM  626 (741)
Q Consensus       552 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  626 (741)
                      .+..-+++.. ++    +..........+...|++++|++++++.      .+.......+..|.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666665544 22    2222222334556678888888887642      34566667777888899999999999888


Q ss_pred             HHcCCCCCccHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004632          627 RIFGVEPDLQHYACMVDLLS----RSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTND  700 (741)
Q Consensus       627 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  700 (741)
                      .+.+  .| .+...++.++.    -.+++.+|..+|+++  .+++++.+++.++.+....|++++|.+.++++.+.+|++
T Consensus       158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND  234 (290)
T ss_dssp             HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred             HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence            7632  33 33333444333    234688999999888  456778888888888888999999999999999999998


Q ss_pred             chhHHHHHHHHhhcCCh-HHHHHHHHHHHhC
Q 004632          701 NGYYTLLSNIYAEEGNW-DEFGKVRSIMEVT  730 (741)
Q Consensus       701 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~  730 (741)
                      +.++..++-+....|+. +.+.++++++++.
T Consensus       235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            88888888888888888 5667788777663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=1.8e-07  Score=87.99  Aligned_cols=180  Identities=9%  Similarity=-0.021  Sum_probs=113.9

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 004632          533 DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN-V---VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV----T  602 (741)
Q Consensus       533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~  602 (741)
                      ....+..+...+.+.|++++|...|+++..  |+ .   ..+..+..++...|++++|...++++.+  ..|+..    +
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence            344555566666777777777777776653  32 1   3455666677777777777777777776  344322    3


Q ss_pred             HHHHHHHHhcc--------CCHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 004632          603 FMNILWACSHS--------GSVEEGKFYFNAMRIFGVEPDL-QHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGAL  673 (741)
Q Consensus       603 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l  673 (741)
                      +..+..++...        |++++|.+.++.+.+..  |+. ..+..+...    +......           ......+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~  172 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM----DYLRNRL-----------AGKELYV  172 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence            34444444433        56667777777776532  222 122111111    0000000           0112245


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          674 LNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       674 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      ...+.+.|++++|...++++++..|+++   ..+..++.+|.+.|++++|..+++.+..+.
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6678899999999999999999987654   689999999999999999999999887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.87  E-value=2.3e-07  Score=83.13  Aligned_cols=117  Identities=9%  Similarity=0.005  Sum_probs=72.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 004632          613 SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGC-RIHKR--IDVMK  687 (741)
Q Consensus       613 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~-~~~g~--~~~a~  687 (741)
                      .++.+++...++...+.+ +.+...|..++..|...|++++|...+++. . .+.+...+..+..++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            445555665566555533 334566666666666666666666666666 2 334555666666553 45555  46677


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          688 TIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      ++++++++.+|+++.++..|+..+.+.|++++|+..|+++.+.
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7777777777777767777777777777777777777766653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.86  E-value=6.2e-08  Score=81.93  Aligned_cols=123  Identities=8%  Similarity=0.011  Sum_probs=94.3

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 004632          585 ASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--P  662 (741)
Q Consensus       585 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~  662 (741)
                      ..++++..+  +.|+.  +..+...+...|++++|...|+.+.... +.+...+..++.++.+.|++++|...++++  .
T Consensus        13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456666666  56654  4445667778888888888888887743 335777788888888888888888888888  3


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632          663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA  712 (741)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  712 (741)
                      .|.+...+..++.++...|++++|...++++++..|+++..+...+.+..
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            55677788888888888888888888888888888888888877776654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=4.8e-07  Score=88.82  Aligned_cols=246  Identities=13%  Similarity=0.100  Sum_probs=168.7

Q ss_pred             hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHH
Q 004632          409 CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAIN  485 (741)
Q Consensus       409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~  485 (741)
                      +.+.|++.+|.-.|+..++.+|.+..+|..|.......++-..|+..+.+..+-   |....-.|.-+|...|.-..|+.
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            445677777777788888887777778888888888887777777777776654   33455566667777788888888


Q ss_pred             HHHHHHHCCCCC--------CHHHHHHHHHHHhccccHHhHHHHHHHH-HHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 004632          486 LFHQMYLNCLEM--------DEVTFLTAIQACSNIGQLEKGKWVHHKL-ISYGVRKDIYIDTALTDMYAKCGDLQTAQRV  556 (741)
Q Consensus       486 ~~~~m~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  556 (741)
                      .++..+....+-        +...-..  ..+..........++|-.+ ...+..+|+.+...|.-.|.-.|++++|...
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            888776543110        0000000  1122222334444555444 5555557888888888889999999999999


Q ss_pred             HHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 004632          557 FDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVE  632 (741)
Q Consensus       557 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  632 (741)
                      |+.+..  | |...||.|...++...+.++|+..|.++++  +.|+.+ ....|.-+|...|.+++|.+.|-.++...-.
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            998873  4 678899999999999999999999999999  889865 6666777899999999999988877662111


Q ss_pred             ---------CCccHHHHHHHHHHhcCChHHHHHHH
Q 004632          633 ---------PDLQHYACMVDLLSRSGDIEGAFKMI  658 (741)
Q Consensus       633 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~  658 (741)
                               ++..+|..|=.++.-.++.|-+.+..
T Consensus       531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             ccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence                     11235555555555555555444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.79  E-value=7.6e-06  Score=82.73  Aligned_cols=22  Identities=14%  Similarity=0.090  Sum_probs=11.6

Q ss_pred             HHHHhccCCHHHHHHHHHHHHH
Q 004632          607 LWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       607 l~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      ..++...|+.++|...++.+..
T Consensus       271 a~~~~~~~~~~~a~~~L~~l~~  292 (355)
T cd05804         271 ALALAGAGDKDALDKLLAALKG  292 (355)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHH
Confidence            3344555555555555555544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.77  E-value=4.6e-05  Score=87.78  Aligned_cols=364  Identities=11%  Similarity=-0.031  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCCCCccc--HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 004632          335 LGPALIEFYAECGKMSECEKVIHAIGERNILS--WNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNV  412 (741)
Q Consensus       335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  412 (741)
                      ........+...|++.+|..........+...  ...........|+++.+..+++.+.......+..........+...
T Consensus       343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~  422 (903)
T PRK04841        343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ  422 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence            33445566777788887777666665432211  1222334455677777666666542211111222222233334566


Q ss_pred             CChHHHHHHHHHHHHhcCCc----c---h--hHHHHHHHHHhcCCHHHHHHHHHhccC--C--Cc----hHHHHHHHHHH
Q 004632          413 GSLQLGLQIHGHVIKIDCKD----E---F--VQSSLIDMYSKCGFKNLAYLLFERIQQ--K--SV----VMWNSMICGFY  475 (741)
Q Consensus       413 ~~~~~a~~~~~~~~~~~~~~----~---~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~  475 (741)
                      |+++++...+..+...-...    .   .  ....+...+...|++++|...+++...  +  +.    ...+.+...+.
T Consensus       423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~  502 (903)
T PRK04841        423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH  502 (903)
T ss_pred             CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence            78888888777665432110    1   1  223344555667777777777765432  1  11    12344445556


Q ss_pred             hcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccccHHhHHHHHHHHHH----cCCCC---CchhHHHHHHH
Q 004632          476 QNGNSLEAINLFHQMYLNCL---EM--DEVTFLTAIQACSNIGQLEKGKWVHHKLIS----YGVRK---DIYIDTALTDM  543 (741)
Q Consensus       476 ~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~  543 (741)
                      ..|++++|...+++.....-   .+  ...++..+...+...|+++.|...+++..+    .+...   ....+..+...
T Consensus       503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  582 (903)
T PRK04841        503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL  582 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            67777777777776653211   11  112333444555667777777766665533    12110   11122233444


Q ss_pred             HHhcCCHHHHHHHHHhcCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHH
Q 004632          544 YAKCGDLQTAQRVFDSMSE------R--NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK-PNEVTF-----MNILWA  609 (741)
Q Consensus       544 ~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~-----~~ll~~  609 (741)
                      +...|++++|...+.+...      +  ....+..+...+...|++++|...++++....-. .....+     ...+..
T Consensus       583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  662 (903)
T PRK04841        583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY  662 (903)
T ss_pred             HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence            4555666666666655431      1  1122333444555566666666666655431000 000000     001122


Q ss_pred             HhccCCHHHHHHHHHHHHHcCCCCCcc----HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHH
Q 004632          610 CSHSGSVEEGKFYFNAMRIFGVEPDLQ----HYACMVDLLSRSGDIEGAFKMIHSM-------PFPA-NGSIWGALLNGC  677 (741)
Q Consensus       610 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~  677 (741)
                      +...|+.+.|.+.+........ ....    .+..+..++...|++++|...+++.       +... ...+...+..++
T Consensus       663 ~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~  741 (903)
T PRK04841        663 WQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY  741 (903)
T ss_pred             HHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3335566666666554432110 0111    1234455555666666666665554       1111 112334444455


Q ss_pred             HhcCCHHHHHHHHHHHhccCCC
Q 004632          678 RIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       678 ~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      ...|+.++|...+.+++++...
T Consensus       742 ~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        742 WQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHhCc
Confidence            5666666666666666665544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=1.8e-06  Score=87.24  Aligned_cols=210  Identities=15%  Similarity=0.169  Sum_probs=177.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 004632          435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQ  514 (741)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  514 (741)
                      ....+...+...|-...|..+|+++     ..|...+.+|+..|+..+|..+..+-.+  -+|++..|..+.+......-
T Consensus       400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence            6778899999999999999999985     5788899999999999999999888777  48999999999999888888


Q ss_pred             HHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004632          515 LEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQM  591 (741)
Q Consensus       515 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  591 (741)
                      +++|.++.+.....       .-..+.....+.++++++.+.|+.-.+   -...+|-.+..+..+.++++.|.+.|...
T Consensus       473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            99999888765332       112222334457899999999987664   24568888888899999999999999999


Q ss_pred             HHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          592 LDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       592 ~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      ..  +.||.. .|+.+-.+|.+.|+..+|...++++.+.+ .-+...+...+-...+.|.+++|++.+.++
T Consensus       546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            98  889765 89999999999999999999999999966 445667777777888999999999999988

>PLN02789 farnesyltranstransferase

Probab=98.75  E-value=3.8e-06  Score=80.96  Aligned_cols=183  Identities=17%  Similarity=0.157  Sum_probs=121.9

Q ss_pred             HHhcC-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCH
Q 004632          544 YAKCG-DLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQ--LNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSV  616 (741)
Q Consensus       544 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~  616 (741)
                      +...| ++++++..++++.+   .+..+|+.....+.+.|+  .++++.+++++.+  ..| |..+|.....++...|++
T Consensus        81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789         81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhH
Confidence            33334 45666666665552   233445544444444454  2567778888887  556 445777777778888888


Q ss_pred             HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc---CCh----HHHHHHHHhC--CCCCCHHHHHHHHHHHHhc----CCH
Q 004632          617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS---GDI----EGAFKMIHSM--PFPANGSIWGALLNGCRIH----KRI  683 (741)
Q Consensus       617 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~----g~~  683 (741)
                      +++++.++++++.++ -+...|+....++.+.   |..    ++++++..++  ..|.+...|+-+...+...    ++.
T Consensus       159 ~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~  237 (320)
T PLN02789        159 EDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD  237 (320)
T ss_pred             HHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence            888888888887553 3455666655555443   222    4567776555  3556777888777777663    445


Q ss_pred             HHHHHHHHHHhccCCCCchhHHHHHHHHhhcC------------------ChHHHHHHHHHHHh
Q 004632          684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG------------------NWDEFGKVRSIMEV  729 (741)
Q Consensus       684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~  729 (741)
                      .+|.+...++...+|+++.++..|+.+|....                  ..++|.++++.|.+
T Consensus       238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~  301 (320)
T PLN02789        238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV  301 (320)
T ss_pred             hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence            67888888988889999999999999998642                  34678888888843

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.74  E-value=0.0009  Score=77.22  Aligned_cols=368  Identities=9%  Similarity=-0.057  Sum_probs=183.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 004632          235 NSFIVMYSKCGDLLSAERTFVKIEKRCTT--SWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGW  312 (741)
Q Consensus       235 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  312 (741)
                      ......+...|++.+|.............  ............|++..+.+.++.+.......+..........+...|+
T Consensus       345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~  424 (903)
T PRK04841        345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR  424 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence            33444566677777776666555443221  1112223344556666666665554221111111122222333345566


Q ss_pred             hhhHHHHHHHHHHhCCCCC---cchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHH
Q 004632          313 LREGKSVHCQIIRKGMGPE---YDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQ  389 (741)
Q Consensus       313 ~~~a~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  389 (741)
                      .+++...+....+.--..+   +.....                           .....+...+...|++++|...+++
T Consensus       425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~---------------------------~~~~~~a~~~~~~g~~~~A~~~~~~  477 (903)
T PRK04841        425 YSEVNTLLARAEQELKDRNIELDGTLQA---------------------------EFNALRAQVAINDGDPEEAERLAEL  477 (903)
T ss_pred             HHHHHHHHHHHHHhccccCcccchhHHH---------------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            6666666665543211000   000000                           0001112223345555555555555


Q ss_pred             HHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHHHhcC----Ccch--hHHHHHHHHHhcCCHHHHHHHHHhc
Q 004632          390 MQTWGLMPDS----FSVASSLSACGNVGSLQLGLQIHGHVIKIDC----KDEF--VQSSLIDMYSKCGFKNLAYLLFERI  459 (741)
Q Consensus       390 m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~  459 (741)
                      ....-...+.    .....+...+...|+++.|...+..+.....    ....  ....+...+...|+++.|...+++.
T Consensus       478 al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  557 (903)
T PRK04841        478 ALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA  557 (903)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4432101111    1112222234445566655555555443211    1111  3344555566666666666665543


Q ss_pred             cC-------CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccccHHhHHHHHHH
Q 004632          460 QQ-------KS----VVMWNSMICGFYQNGNSLEAINLFHQMYLN--CLEMD--EVTFLTAIQACSNIGQLEKGKWVHHK  524 (741)
Q Consensus       460 ~~-------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~  524 (741)
                      ..       ++    ...+..+...+...|++++|...+.+....  ...+.  ...+..+.......|+.+.|...+..
T Consensus       558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~  637 (903)
T PRK04841        558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR  637 (903)
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            21       01    112333444556668888887777765432  11121  23333445566678888888887777


Q ss_pred             HHHcCCCCC-chhH-----HHHHHHHHhcCCHHHHHHHHHhcCCCC---H----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004632          525 LISYGVRKD-IYID-----TALTDMYAKCGDLQTAQRVFDSMSERN---V----VSWSAMIDCYGMHGQLNDAASLFKQM  591 (741)
Q Consensus       525 ~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~l~~~~~~~~~~~~A~~~~~~~  591 (741)
                      +........ ...+     ...+..+...|+.+.|...+.....+.   .    ..+..+..++...|++++|...+++.
T Consensus       638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a  717 (903)
T PRK04841        638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL  717 (903)
T ss_pred             HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            644211111 0101     112234455788888888887766422   1    11345667788889999999998887


Q ss_pred             HHc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632          592 LDS----GIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       592 ~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  629 (741)
                      ...    |..++. .+...+..++...|+.++|...+.++.+.
T Consensus       718 l~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        718 NENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            753    222222 24555666788999999999999998874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.74  E-value=1.3e-07  Score=79.88  Aligned_cols=108  Identities=8%  Similarity=-0.104  Sum_probs=93.9

Q ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 004632          620 KFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG  697 (741)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  697 (741)
                      ..++++.++.  .|+  .+..++..+...|++++|...++..  ..|.+...+..++.++...|++++|...|+++.+++
T Consensus        13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3456666552  343  3556788899999999999999998  456688899999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          698 TNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       698 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      |+++.++..++.++...|++++|...|++..+..
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999987744

>PF12854 PPR_1: PPR repeat

Probab=98.72  E-value=1.2e-08  Score=60.54  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             hCCCCChhhhHHHHHHHHccCChhhHHHhhccCC
Q 004632           23 TGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFK   56 (741)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~   56 (741)
                      .|+.||..|||.||+.|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4889999999999999999999999999999885

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.71  E-value=2.2e-06  Score=91.23  Aligned_cols=129  Identities=12%  Similarity=-0.011  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004632          599 NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLN  675 (741)
Q Consensus       599 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~  675 (741)
                      +...+..|.....+.|++++|..+++.+.+.  .|+ ......++.++.+.+++++|...+++.  ..|.+......+..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            3445555555666666666666666666552  333 334445555666666666666666665  23344555555556


Q ss_pred             HHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          676 GCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       676 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++..+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.68  E-value=2.3e-06  Score=92.38  Aligned_cols=197  Identities=9%  Similarity=0.071  Sum_probs=121.8

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004632          534 IYIDTALTDMYAKCGDLQTAQRVFDSMSE--------RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMN  605 (741)
Q Consensus       534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~  605 (741)
                      ...|-..|......++.++|+++++++..        .-...|.+++.....-|.-+...++|+++.+  ..-....|..
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHLK 1535 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHHH
Confidence            34445555555666666666666666552        1233566666655556666666677777666  2222345666


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcC
Q 004632          606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA---NGSIWGALLNGCRIHK  681 (741)
Q Consensus       606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g  681 (741)
                      |...|.+.+.+++|.++++.|.+. +......|..+++.+.+..+-+.|..+++++ ..-|   ........+....+.|
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence            666677777777777777777662 2234556666667777766666777776666 2222   3444455555566777


Q ss_pred             CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632          682 RIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK  733 (741)
Q Consensus       682 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  733 (741)
                      |.+++..+|+..+...|.....|..+++.=.+.|+.+.+..+|+++...++.
T Consensus      1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            7777777777777777776667777777777777777777777776665544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=6.9e-06  Score=72.13  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004632          612 HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTI  689 (741)
Q Consensus       612 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~  689 (741)
                      ..|++++|+++++.+++.+ +.|..++..-+.+.-..|+.-+|++-+.+.  .+..|...|..+...|...|+++.|.-+
T Consensus        98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            3445555555555554432 223333333333333444444444444444  3444555555555555555555555555


Q ss_pred             HHHHhccCCCCchhHHHHHHHHhhcC---ChHHHHHHHHHHHh
Q 004632          690 EKELSVTGTNDNGYYTLLSNIYAEEG---NWDEFGKVRSIMEV  729 (741)
Q Consensus       690 ~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~  729 (741)
                      +++++=.+|.++..+..|+.+++..|   +.+-|.++|.+..+
T Consensus       177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            55555555555555555555544443   23334444444443

>PLN02789 farnesyltranstransferase

Probab=98.62  E-value=2.6e-06  Score=82.05  Aligned_cols=186  Identities=11%  Similarity=0.122  Sum_probs=141.6

Q ss_pred             HHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCH--
Q 004632          544 YAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHG-QLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSV--  616 (741)
Q Consensus       544 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~--  616 (741)
                      +...++.++|+...+++.+  | +..+|+....++...| ++++++..++++.+  ..|+. .+|+.....+.+.|+.  
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCchhh
Confidence            4455677788888887774  3 3445665556666667 68999999999998  45654 4677665556666653  


Q ss_pred             HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 004632          617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIH---KR----IDVMK  687 (741)
Q Consensus       617 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~---g~----~~~a~  687 (741)
                      +++..+++++.+.. +-+...|.....++.+.|+++++++.++++  ..+.+..+|+.....+.+.   |.    .++..
T Consensus       125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el  203 (320)
T PLN02789        125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL  203 (320)
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence            67899999998854 346778888888899999999999999998  4566788888887776554   22    35788


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 004632          688 TIEKELSVTGTNDNGYYTLLSNIYAE----EGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       688 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  732 (741)
                      ...++++..+|+|..+|..+..++..    .++..+|.++..+..+.++
T Consensus       204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~  252 (320)
T PLN02789        204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS  252 (320)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence            88899999999999999999999988    4566779888888766443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.62  E-value=4.4e-06  Score=74.87  Aligned_cols=155  Identities=8%  Similarity=0.061  Sum_probs=117.6

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHH
Q 004632          541 TDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEG  619 (741)
Q Consensus       541 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a  619 (741)
                      +..|...|+++.+....+.+..|..        .+...++.+++...+++..+  ..| |...|..+...|...|++++|
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3457778887776555444332210        11235677888888888888  456 455888888899999999999


Q ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHH-HhcCC--hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632          620 KFYFNAMRIFGVEPDLQHYACMVDLL-SRSGD--IEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELS  694 (741)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  694 (741)
                      ...|+++.+.. +-+...+..++.++ ...|+  .++|.+++++.  ..+.+..++..++..+.+.|++++|...+++++
T Consensus        93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999998854 23577788888864 67777  59999999998  455578888999999999999999999999999


Q ss_pred             ccCCCCchhHHH
Q 004632          695 VTGTNDNGYYTL  706 (741)
Q Consensus       695 ~~~p~~~~~~~~  706 (741)
                      +..|.+..-+..
T Consensus       172 ~l~~~~~~r~~~  183 (198)
T PRK10370        172 DLNSPRVNRTQL  183 (198)
T ss_pred             hhCCCCccHHHH
Confidence            999887654433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.59  E-value=3.9e-06  Score=74.47  Aligned_cols=155  Identities=11%  Similarity=0.108  Sum_probs=124.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632          569 SAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR  647 (741)
Q Consensus       569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (741)
                      ..+-..+...|+-+....+......  ..| |......++....+.|++..|+..++++.... ++|...|+.++-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence            5566777788888888888777655  334 34455567778888999999999999988743 6678899999999999


Q ss_pred             cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632          648 SGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       648 ~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                      .|++++|..-+.+. . .+.++...+++...+.-.||.+.|..++..+....+.++.+-..|+.+....|+..+|.++-.
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            99999998888877 3 445677888888888899999999999999888888888888899888889999999887755


Q ss_pred             H
Q 004632          726 I  726 (741)
Q Consensus       726 ~  726 (741)
                      .
T Consensus       227 ~  227 (257)
T COG5010         227 Q  227 (257)
T ss_pred             c
Confidence            3

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=3.3e-06  Score=85.39  Aligned_cols=211  Identities=11%  Similarity=0.005  Sum_probs=129.5

Q ss_pred             HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcC
Q 004632          502 FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHG  579 (741)
Q Consensus       502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~  579 (741)
                      -..+...+...|-...|..+++++.         .+...+.+|...|+..+|..+..+..+  |+...|..+........
T Consensus       401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s  471 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS  471 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence            3344455556666666666666553         233455666667777777666655443  55556665555544444


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHH
Q 004632          580 QLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH  659 (741)
Q Consensus       580 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  659 (741)
                      -+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.+ +....+|-.++-+..+.+++..|.+.|.
T Consensus       472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            455555555443221       11122222234567777777777666632 2345566666666677777777777777


Q ss_pred             hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          660 SM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       660 ~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +.  ..|.+...|+++..++.+.|+..+|...++++++-+-++..+|....-+..+.|.+++|.+.+.++.+
T Consensus       544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            66  33445667777777777777777777777777777766777777777677777777777777777666

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.57  E-value=0.001  Score=65.46  Aligned_cols=127  Identities=9%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCR  678 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~  678 (741)
                      +|..++..-.+..-.+.|..+|.++.+.+..+ ++..+.+++.-|+. ++.+-|.++|+--  .++.++......+..+.
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~  446 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLS  446 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            34444444444455555555555555533333 44445555554432 4555555555544  34444444455555555


Q ss_pred             hcCCHHHHHHHHHHHhcc--CCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          679 IHKRIDVMKTIEKELSVT--GTN-DNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       679 ~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ..++-..+..+|++++..  .|+ ...+|.....-=..-|+.+.++++-+++..
T Consensus       447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            555555555555555544  221 224455555444455555555555544433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.56  E-value=4e-06  Score=78.84  Aligned_cols=184  Identities=13%  Similarity=0.061  Sum_probs=130.5

Q ss_pred             CCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HH
Q 004632          496 EMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRK--DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN-V---VS  567 (741)
Q Consensus       496 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~  567 (741)
                      ......+......+...|+++.|...++.+.+..+..  ....+..+..++.+.|++++|...++++.+  |+ .   .+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            3456677788888999999999999999998765331  124567788899999999999999999874  32 2   24


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH
Q 004632          568 WSAMIDCYGMH--------GQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY  638 (741)
Q Consensus       568 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  638 (741)
                      +..+..++...        |++++|.+.++++.+  ..|+.. .+..+.... .   ...      ...        ...
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~-~---~~~------~~~--------~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD-Y---LRN------RLA--------GKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH-H---HHH------HHH--------HHH
Confidence            55556666654        789999999999998  567654 222221110 0   000      000        011


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632          639 ACMVDLLSRSGDIEGAFKMIHSM----P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       639 ~~l~~~~~~~~~~~~A~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      ..+...+.+.|++++|+..+++.    + .+.....+..++.++.+.|++++|...++.+....|+
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            24667788999999999999887    2 2234568888999999999999999998888776663

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.54  E-value=1.1e-06  Score=74.24  Aligned_cols=99  Identities=6%  Similarity=-0.037  Sum_probs=50.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 004632          603 FMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIH  680 (741)
Q Consensus       603 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~  680 (741)
                      ...+...+...|++++|.+.++.+...+ +.+...+..++.++.+.|++++|...+++.  ..+.+...+..+...+...
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence            3344445555555555555555555432 223444555555555555555555555544  2233444555555555555


Q ss_pred             CCHHHHHHHHHHHhccCCCCch
Q 004632          681 KRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       681 g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      |++++|...++++.+.+|++..
T Consensus        99 g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        99 GEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCHHHHHHHHHHHHHhccccch
Confidence            5555555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.52  E-value=2e-05  Score=84.13  Aligned_cols=135  Identities=7%  Similarity=0.031  Sum_probs=97.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHH
Q 004632          564 NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMV  642 (741)
Q Consensus       564 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  642 (741)
                      ++..+..|.....+.|.+++|+.+++...+  +.|+.. ....+...+.+.+++++|+..+++..... +-+......+.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a  161 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA  161 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence            466677777777778888888888888877  677654 55666667777888888888888777643 22455666777


Q ss_pred             HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          643 DLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       643 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      .++.+.|++++|..+|+++  +.+.+...+..+..++-+.|+.++|...|+++.+...+-.
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            7777888888888888777  3444567777777777788888888888888777654433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.52  E-value=1.9e-05  Score=70.28  Aligned_cols=152  Identities=13%  Similarity=0.104  Sum_probs=126.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 004632          538 TALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHS  613 (741)
Q Consensus       538 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~  613 (741)
                      ..+-..+...|+-+....+......   .|.......+....+.|++..|+..+.+...  +.| |...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence            5556667778888888888777552   4556677789999999999999999999998  555 566888888899999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004632          614 GSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEK  691 (741)
Q Consensus       614 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  691 (741)
                      |+++.|..-|.+..+.. +-++..++.++-.|.-.|+.+.|..++.+.  ..+.+..+..++..+....|++++|+.+..
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            99999999999999842 235677888999999999999999999988  333478888999999999999999999876


Q ss_pred             H
Q 004632          692 E  692 (741)
Q Consensus       692 ~  692 (741)
                      +
T Consensus       227 ~  227 (257)
T COG5010         227 Q  227 (257)
T ss_pred             c
Confidence            5

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=1.7e-05  Score=70.28  Aligned_cols=105  Identities=10%  Similarity=0.043  Sum_probs=52.5

Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 004632          611 SHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR----SGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRID  684 (741)
Q Consensus       611 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~  684 (741)
                      .+..+++-|.+.+++|.+..   +..+.+.|..++.+    .+++.+|.-+|+++  +.+|++.+.+..+.++...|+++
T Consensus       148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence            34445555555555554411   23333333333322    23455555555555  34555555555555555555555


Q ss_pred             HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 004632          685 VMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD  718 (741)
Q Consensus       685 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  718 (741)
                      +|..+++.++..+++++.++..++-+-...|+..
T Consensus       225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~  258 (299)
T KOG3081|consen  225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDA  258 (299)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence            5555555555555555555555554444445443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.50  E-value=3.8e-05  Score=83.45  Aligned_cols=224  Identities=15%  Similarity=0.091  Sum_probs=167.6

Q ss_pred             hhhHHHHHHHhhccCChhhHHHHHHHHHHhC-CC--CCcchHHHHHHHHHHhcCChHHHHHHHHhcCCC--CcccHHHHH
Q 004632          297 LITLITVLGSCAGLGWLREGKSVHCQIIRKG-MG--PEYDYLGPALIEFYAECGKMSECEKVIHAIGER--NILSWNMLI  371 (741)
Q Consensus       297 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li  371 (741)
                      ...|...+......++.+.|+++.++.++.- +.  ..-..+|.+++++-...|.-+...++|++..+-  ....|..|.
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            3466777777778888888888888877642 11  123467777888878888888888888887652  245688888


Q ss_pred             HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch--hHHHHHHHHHhcCCH
Q 004632          372 SEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF--VQSSLIDMYSKCGFK  449 (741)
Q Consensus       372 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~  449 (741)
                      ..|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++++.-|....  +..-.+.+-.+.|+.
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            9999999999999999999876 4566778888888888999999999999999888887443  777788888889999


Q ss_pred             HHHHHHHHhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHhHHHH
Q 004632          450 NLAYLLFERIQQKS---VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDE--VTFLTAIQACSNIGQLEKGKWV  521 (741)
Q Consensus       450 ~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~  521 (741)
                      +.++.+|+......   ...|+..++.=.++|+.+.+..+|++....++.|-.  ..|...+..--..|+-..++.+
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence            99999998876543   468999999999999999999999999888776653  2344444433344444443333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=6.4e-05  Score=73.03  Aligned_cols=174  Identities=13%  Similarity=0.024  Sum_probs=108.9

Q ss_pred             CCHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 004632          548 GDLQTAQRVFDSMSE------RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGK  620 (741)
Q Consensus       548 g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~  620 (741)
                      .+..++....+.+..      |+...+...+.+......-..+...+.+-.+    | -........-.+...|++++|+
T Consensus       251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~aa~YG~A~~~~~~~~~d~A~  326 (484)
T COG4783         251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK----RGGLAAQYGRALQTYLAGQYDEAL  326 (484)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC----ccchHHHHHHHHHHHHhcccchHH
Confidence            345556656666652      4445555555543332222222222222221    2 1222222333445667888888


Q ss_pred             HHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632          621 FYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT  698 (741)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  698 (741)
                      ..++.+++. .+-|+.......+.+.+.++.++|.+.++++ ...| ....+..+..++.+.|+..+|+..++.....+|
T Consensus       327 ~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         327 KLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            888887763 2345666667778888888888888888887 3334 366677778888888888888888888888888


Q ss_pred             CCchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632          699 NDNGYYTLLSNIYAEEGNWDEFGKVRSI  726 (741)
Q Consensus       699 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~  726 (741)
                      +++..|..|+.+|...|+..+|..-+-+
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            8888888888887777766666554444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.47  E-value=2.3e-05  Score=84.34  Aligned_cols=245  Identities=10%  Similarity=0.127  Sum_probs=155.8

Q ss_pred             CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHH
Q 004632          463 SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFL-TAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALT  541 (741)
Q Consensus       463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  541 (741)
                      +...+..|+..|...+++++|.++.+...+.  .|+...+- .....+...++...+..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            5578888999999999999999999976664  45443322 222245555554444333                 223


Q ss_pred             HHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHH
Q 004632          542 DMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEE  618 (741)
Q Consensus       542 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~  618 (741)
                      +......++.....+...+..  .+...+..+..+|-+.|+.++|..+|+++++  +.|+ ....+.+...|... +.++
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHH
Confidence            333334444333444444442  2445778888999999999999999999999  5574 55888888888888 9999


Q ss_pred             HHHHHHHHHHcCCCCCccHHHHHHH---HHH--hcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004632          619 GKFYFNAMRIFGVEPDLQHYACMVD---LLS--RSGDIEGAFKMIHSM----PFPANGSIWGALLNGCRIHKRIDVMKTI  689 (741)
Q Consensus       619 a~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~~~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~  689 (741)
                      |.+++.++...-+  +..-|+.+..   -++  ...+++.-..+.+++    ++..-..++.-+...|.+.++++++..+
T Consensus       168 A~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i  245 (906)
T PRK14720        168 AITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI  245 (906)
T ss_pred             HHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            9999988876311  1111111111   111  122333333333333    2333444555566677888899999999


Q ss_pred             HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-CCCcc
Q 004632          690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV-TGLKK  734 (741)
Q Consensus       690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~  734 (741)
                      ++.+++.+|.|..+...++.+|.  +.|.+ ...+++.++ .|+..
T Consensus       246 LK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~  288 (906)
T PRK14720        246 LKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGN  288 (906)
T ss_pred             HHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcccc
Confidence            99999999999999999998887  44444 444444333 44443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.44  E-value=7.3e-06  Score=80.53  Aligned_cols=123  Identities=11%  Similarity=0.089  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRI  679 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~  679 (741)
                      ....|+..+...++++.|+.+++++.+..  |+  ....+++.+...++-.+|++++++.  ..|.+...+......+.+
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            44556667777889999999999998753  44  4556888888888999999999888  455677788888888999


Q ss_pred             cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          680 HKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       680 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      .++++.|+.+.+++.+..|.+-..|..|+.+|.+.|++++|+-.++.+-
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999988764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.44  E-value=2.9e-06  Score=70.04  Aligned_cols=94  Identities=11%  Similarity=-0.061  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 004632          637 HYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE  714 (741)
Q Consensus       637 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  714 (741)
                      ..-.+...+...|++++|.++|+-.  -.+-+...|..|+.++...|++++|+..|.++..++|+++..+..++.+|...
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            3444666677899999999999988  34567889999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 004632          715 GNWDEFGKVRSIMEVT  730 (741)
Q Consensus       715 g~~~~A~~~~~~~~~~  730 (741)
                      |+.++|.+.|+..+..
T Consensus       117 G~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKALKAVVRI  132 (157)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988774

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.44  E-value=5.6e-06  Score=69.92  Aligned_cols=108  Identities=14%  Similarity=0.138  Sum_probs=88.8

Q ss_pred             HHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632          622 YFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT  698 (741)
Q Consensus       622 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  698 (741)
                      .++++...  .| +......++..+...|++++|.+.++.+  ..+.+...+..++..+...|++++|...++++.+.+|
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44555543  33 3455667788888999999999999887  3456788888899999999999999999999999999


Q ss_pred             CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          699 NDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       699 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      +++..+..++.+|...|++++|...+++..+..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999887744

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=7.9e-05  Score=66.26  Aligned_cols=153  Identities=12%  Similarity=0.105  Sum_probs=77.0

Q ss_pred             HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHH
Q 004632          543 MYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSH----SGSVEE  618 (741)
Q Consensus       543 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~  618 (741)
                      .|...|++++|.+.......  ....-.=+..+.+..+.+.|.+.+++|.+  +. +..|.+.|..++.+    .+...+
T Consensus       117 i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  117 IYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             HhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhh
Confidence            34555555555555554221  11222222233444555666666666655  22 34445544444432    234555


Q ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhc
Q 004632          619 GKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK-RIDVMKTIEKELSV  695 (741)
Q Consensus       619 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~  695 (741)
                      |.-+|++|-+. .+|++.+.+-...++...|++++|..+++..  +...++.++.+++.+....| +.+-..+.+.++..
T Consensus       192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            66666666442 3455555555555666666666666666665  34445555555555444444 33444555555555


Q ss_pred             cCCCCc
Q 004632          696 TGTNDN  701 (741)
Q Consensus       696 ~~p~~~  701 (741)
                      ..|..+
T Consensus       271 ~~p~h~  276 (299)
T KOG3081|consen  271 SHPEHP  276 (299)
T ss_pred             cCCcch
Confidence            566544

>PF12854 PPR_1: PPR repeat

Probab=98.42  E-value=3.2e-07  Score=54.42  Aligned_cols=32  Identities=31%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             CCCCChhhhhHHHHHhHhcCChhHHHHHHccC
Q 004632          125 GFDKDDVIQTSILCTYGEFGCLDDARKVFDKM  156 (741)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  156 (741)
                      |+.||..+|+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55666666666666666666666666666665

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.38  E-value=0.0032  Score=62.19  Aligned_cols=77  Identities=13%  Similarity=0.069  Sum_probs=52.8

Q ss_pred             CCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHH
Q 004632          193 EPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK--RCTTSWTAMIS  270 (741)
Q Consensus       193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~  270 (741)
                      +-|..+|..|++-+... ..+++++.++++...- +.+...|...|..-.+.++++..+++|.+...  -++..|...+.
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~   94 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS   94 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence            45677888888777666 7788888888776543 33556777777777777888888888877543  34555555554


Q ss_pred             H
Q 004632          271 C  271 (741)
Q Consensus       271 ~  271 (741)
                      -
T Consensus        95 Y   95 (656)
T KOG1914|consen   95 Y   95 (656)
T ss_pred             H
Confidence            3

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=6.7e-05  Score=72.88  Aligned_cols=134  Identities=12%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHH
Q 004632          576 GMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW-ACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEG  653 (741)
Q Consensus       576 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  653 (741)
                      ...|+++.|+..++.++.  -.|+...|..+.. .+.+.++.++|.+.++++...  .|+ ....-.+.++|.+.|+..+
T Consensus       317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            345666666666666665  3555544443333 566666666666666666653  233 3344455666666666666


Q ss_pred             HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          654 AFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       654 A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      |+..+++.  ..|.++..|..|..+|...|+..++...                 .+..|+-.|++++|+..+...+++
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence            66666665  3455666666666666666666555442                 334455556666666665555553

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.33  E-value=0.0069  Score=63.77  Aligned_cols=101  Identities=17%  Similarity=0.287  Sum_probs=48.6

Q ss_pred             cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHh--hcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHH
Q 004632           73 NNFFEESILLYHKMIREQATISNFIYPSVLRAC--SSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDAR  150 (741)
Q Consensus        73 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  150 (741)
                      .+++..|+....++.+..  |+. .|..++.++  .+.|+.++|..+++.....+.. |..+...+-.+|.+.|+.++|.
T Consensus        22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            445555555555554431  222 233333333  2455555555555555444433 4455555555555566666666


Q ss_pred             HHHccCCC--CCceeHHHHHHHHHhCCCh
Q 004632          151 KVFDKMTS--RDVVSWSSIIASYFDNADV  177 (741)
Q Consensus       151 ~~~~~~~~--~~~~~~~~li~~~~~~g~~  177 (741)
                      .+++...+  |+......+.-+|++.+++
T Consensus        98 ~~Ye~~~~~~P~eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   98 HLYERANQKYPSEELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence            66655544  3322223333444555444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=4.8e-05  Score=67.00  Aligned_cols=151  Identities=16%  Similarity=0.130  Sum_probs=121.8

Q ss_pred             cCCHHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChH
Q 004632          578 HGQLNDAASLFKQMLD---SG-IKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIE  652 (741)
Q Consensus       578 ~~~~~~A~~~~~~~~~---~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  652 (741)
                      ..+.++..+++..+..   .| ..|+.. .|..++-+....|+.+.|...++.+... ++-+...-..-+-.+...|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence            3567788888777764   24 556665 5666666888889999999999998874 3334444444445567789999


Q ss_pred             HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          653 GAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       653 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +|++++++.  ..|.|..++..-+......|..-+|++-+...++..|.|..+|..|+.+|...|++++|.-.++++.-
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            999999999  45667777877777788889888999999999999999999999999999999999999999999865

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.28  E-value=0.0091  Score=62.95  Aligned_cols=107  Identities=9%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             ccCChhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHH
Q 004632          208 ELCSLRPARSIHGHVLRRKI-KIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALE  283 (741)
Q Consensus       208 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  283 (741)
                      ..+++..|.+....+.+..+ .+...++.++  .+.+.|+.++|..+++....   .|..+...+-.+|...++.++|..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            34556666655555554421 1111222221  13455666666655555432   233455555556666666666666


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632          284 SFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS  318 (741)
Q Consensus       284 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  318 (741)
                      +|++....  -|+..-...+..++.+.+++..-.+
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655443  3444444444555555554444333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.28  E-value=0.00069  Score=73.41  Aligned_cols=80  Identities=18%  Similarity=0.196  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 004632          501 TFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQ  580 (741)
Q Consensus       501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~  580 (741)
                      .+..+..+|.+.|+.+++..+|+++.+.. +.++.+.|.+...|+.. ++++|.+++.+.           +..+...++
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq  184 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ  184 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence            44555555556666666666666665555 33555555555555555 666666655443           222444555


Q ss_pred             HHHHHHHHHHHHH
Q 004632          581 LNDAASLFKQMLD  593 (741)
Q Consensus       581 ~~~A~~~~~~~~~  593 (741)
                      +..+.++|.++..
T Consensus       185 ~~~~~e~W~k~~~  197 (906)
T PRK14720        185 YVGIEEIWSKLVH  197 (906)
T ss_pred             chHHHHHHHHHHh
Confidence            5666666666555

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.23  E-value=3.4e-05  Score=65.68  Aligned_cols=85  Identities=14%  Similarity=0.088  Sum_probs=43.4

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632          641 MVDLLSRSGDIEGAFKMIHSM-PFPANG----SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG  715 (741)
Q Consensus       641 l~~~~~~~~~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  715 (741)
                      +...+...|++++|...|+.+ ...|+.    .....+...+...|++++|+..++.. .-.+..+.++..++.+|.+.|
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence            344445555555555555555 111221    12333444555566666666665442 222334445666666666666


Q ss_pred             ChHHHHHHHHH
Q 004632          716 NWDEFGKVRSI  726 (741)
Q Consensus       716 ~~~~A~~~~~~  726 (741)
                      ++++|...|++
T Consensus       133 ~~~~A~~~y~~  143 (145)
T PF09976_consen  133 DYDEARAAYQK  143 (145)
T ss_pred             CHHHHHHHHHH
Confidence            66666666654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.22  E-value=7.6e-05  Score=63.55  Aligned_cols=124  Identities=12%  Similarity=0.145  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHH
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE----VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACM  641 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l  641 (741)
                      |..++..+ ..++...+...++.+.+.  .|+.    .....+...+...|++++|...|+.+......|+  ......+
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            44445544 478888888888888884  3443    2344455678888999999999999988553332  2234457


Q ss_pred             HHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632          642 VDLLSRSGDIEGAFKMIHSMP-FPANGSIWGALLNGCRIHKRIDVMKTIEKELS  694 (741)
Q Consensus       642 ~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  694 (741)
                      ..++...|++++|+..++... .+..+..+...+..+...|++++|...|++++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            788888999999999998873 33455667777888899999999999988763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.15  E-value=3.3e-05  Score=63.52  Aligned_cols=61  Identities=7%  Similarity=-0.162  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTND---NGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .+..++.++.+.|++++|...++++....|++   +.++..++.++.+.|++++|...++++.+
T Consensus        41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            33344444445555555555555555444443   23344445555555555555555554444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.15  E-value=0.0068  Score=57.39  Aligned_cols=242  Identities=15%  Similarity=0.164  Sum_probs=165.3

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 004632          475 YQNGNSLEAINLFHQMYLNCLEMDEV--TFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQT  552 (741)
Q Consensus       475 ~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  552 (741)
                      .-.|+++.|.+-|+.|...   |...  ....+.-...+.|+.+.|.++-+...+.-.. -.......++..+..|+++.
T Consensus       131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~  206 (531)
T COG3898         131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG  206 (531)
T ss_pred             HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence            3468888888888888642   2222  2233444445678888888887777654433 35567778888899999999


Q ss_pred             HHHHHHhcC-----CCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHH
Q 004632          553 AQRVFDSMS-----ERNVV--SWSAMIDCYG---MHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKF  621 (741)
Q Consensus       553 A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~  621 (741)
                      |+++++.-.     +++..  .--.|+.+-.   -..+...|...-.+..+  +.||.. .-.....++.+.|+..++-.
T Consensus       207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~  284 (531)
T COG3898         207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK  284 (531)
T ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence            999988654     34432  1222332211   23456677777777666  788876 44455668999999999999


Q ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 004632          622 YFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM----PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSVT  696 (741)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  696 (741)
                      +++.+-+....|+  +...+  .+.+.|+  .++.-+++.    .. +.+......+..+....|++..|..--+.+...
T Consensus       285 ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~  358 (531)
T COG3898         285 ILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE  358 (531)
T ss_pred             HHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            9999988654444  33222  2334444  444444443    22 446677788888899999999999999999999


Q ss_pred             CCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 004632          697 GTNDNGYYTLLSNIYAEE-GNWDEFGKVRSIMEV  729 (741)
Q Consensus       697 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  729 (741)
                      .|... +|..|+++-... ||-.++...+-+..+
T Consensus       359 ~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         359 APRES-AYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             Cchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            98754 788888887766 999999988886655

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.15  E-value=2.5e-06  Score=64.53  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=56.3

Q ss_pred             cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 004632          648 SGDIEGAFKMIHSM-PFPA---NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKV  723 (741)
Q Consensus       648 ~~~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  723 (741)
                      .|++++|+.+++++ ...|   +...+..++.++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46777777777777 2122   455666677788888888888888888 667777777777778888888888888888


Q ss_pred             HHH
Q 004632          724 RSI  726 (741)
Q Consensus       724 ~~~  726 (741)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.13  E-value=2.6e-05  Score=61.25  Aligned_cols=93  Identities=13%  Similarity=0.074  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632          638 YACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG  715 (741)
Q Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  715 (741)
                      +..++..+...|++++|...++++ . .+.+...+..++..+...|++++|...++++....|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455667777788888888888876 2 33445677777888888899999999999999988988888889999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 004632          716 NWDEFGKVRSIMEVT  730 (741)
Q Consensus       716 ~~~~A~~~~~~~~~~  730 (741)
                      ++++|...+++..+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999988877653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.13  E-value=8.5e-06  Score=58.06  Aligned_cols=60  Identities=15%  Similarity=0.063  Sum_probs=53.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      .++..+...|++++|...++++++..|+++.++..++.++...|++++|..+|+++.+..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            356678899999999999999999999999999999999999999999999999987643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=6.6e-05  Score=68.80  Aligned_cols=107  Identities=11%  Similarity=0.025  Sum_probs=90.4

Q ss_pred             CCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh-cC--CHHHHHHHHHHHhccCCCCchhHHH
Q 004632          632 EPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRI-HK--RIDVMKTIEKELSVTGTNDNGYYTL  706 (741)
Q Consensus       632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~-~g--~~~~a~~~~~~~~~~~p~~~~~~~~  706 (741)
                      +-|...|..|+.+|...|+.+.|...|.+.  -.++++..+..+..++.. .|  +..++..+++++++.+|.|..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            457889999999999999999999999888  245677777777777533 22  5689999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhCCCccCCCC
Q 004632          707 LSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGY  738 (741)
Q Consensus       707 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  738 (741)
                      |+..+...|++.+|...|+.|.+.....+|..
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence            99999999999999999999999776666643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.09  E-value=9.6e-06  Score=58.69  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 004632          666 NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG-NWDEFGKVRSIMEV  729 (741)
Q Consensus       666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~  729 (741)
                      ++..|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999 79999999998776

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.04  E-value=0.00045  Score=57.84  Aligned_cols=133  Identities=8%  Similarity=-0.048  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 004632          596 IKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA---NGSIWG  671 (741)
Q Consensus       596 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~---~~~~~~  671 (741)
                      ..|....-..|..++.+.|++.+|...|++...--+.-|......+.++....+++.+|...++++ ..+|   ++....
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            455555555666677777777777777777665333445566666666677777777777777666 2112   333444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .+.+.+...|.+++|+..++.++.-.|. +......+..+.++|+..+|..-+..+-+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            5566667777777777777777766665 23344455566677766666655554444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.04  E-value=0.015  Score=56.34  Aligned_cols=189  Identities=11%  Similarity=0.052  Sum_probs=105.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHH-------HHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHH
Q 004632          535 YIDTALTDMYAKCGDLQTAQRVFDSMS--ERNVVSW-------SAMIDCYG----MHGQLNDAASLFKQMLDSGIKPNEV  601 (741)
Q Consensus       535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~-------~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~  601 (741)
                      .++..++....+.++...|...+.-+.  +|+...-       ..+-+..+    ..-+...-+.+|+.....  .-|..
T Consensus       299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrq  376 (549)
T PF07079_consen  299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQ  376 (549)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHH
Confidence            345555556666777777766665444  3332211       11111111    111233445566666553  23332


Q ss_pred             -HHHHHHH---HHhccCC-HHHHHHHHHHHHHcCCCCCccHHHHHHH----HHHhc---CChH---HHHHHHHhCCCCC-
Q 004632          602 -TFMNILW---ACSHSGS-VEEGKFYFNAMRIFGVEPDLQHYACMVD----LLSRS---GDIE---GAFKMIHSMPFPA-  665 (741)
Q Consensus       602 -~~~~ll~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---~~~~---~A~~~~~~~~~~~-  665 (741)
                       ....|+.   -+.+.|. -++|+.+++.+++.. +-|...-+.+..    .|...   ..+.   +-..++++.+.+| 
T Consensus       377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence             2223332   3556665 778888888887721 123322222211    11111   1111   1223334445444 


Q ss_pred             ---CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 004632          666 ---NGSIWGALLNG--CRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM  727 (741)
Q Consensus       666 ---~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  727 (741)
                         +...-+.|..+  +..+|++.++.-.-.=+.+..| ++.+|..+|-+++...++++|.++++.+
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence               23355666665  5788999998887777778888 8889999999999999999999999865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.01  E-value=0.00013  Score=59.99  Aligned_cols=104  Identities=8%  Similarity=-0.086  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHH
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRIFGV--EPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA----NGSIWGALL  674 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~----~~~~~~~l~  674 (741)
                      ++..+...+...|++++|.+.|+.+.+...  +.....+..++.++.+.|++++|...++++ ...|    ...++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344555566667777777777777765321  111334555677777777777777777766 2112    245566677


Q ss_pred             HHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 004632          675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYT  705 (741)
Q Consensus       675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  705 (741)
                      .++.+.|+.++|...++++.+..|+++.+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            7777788888888888888888887765433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.01  E-value=0.00022  Score=70.36  Aligned_cols=122  Identities=13%  Similarity=0.127  Sum_probs=93.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCH
Q 004632          538 TALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSV  616 (741)
Q Consensus       538 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~  616 (741)
                      ..++..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+  ..| +...+..-...|...+++
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCH
Confidence            34555666678888888888888876666666778888888888888888888887  345 444555556678888889


Q ss_pred             HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCC
Q 004632          617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP  662 (741)
Q Consensus       617 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  662 (741)
                      +.|+++.+++.+.. +-+..+|..|+.+|...|+++.|+-.++.++
T Consensus       251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999998888742 2346688889999999999999998888884

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.00  E-value=5.7e-05  Score=74.95  Aligned_cols=108  Identities=8%  Similarity=-0.004  Sum_probs=90.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 004632          606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRI  683 (741)
Q Consensus       606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~  683 (741)
                      -...+...|++++|+..|+++++.. +-+...|..++.+|.+.|++++|+..++++  -.+.+...+..++.++...|++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            3456778899999999999999854 235678888899999999999999999998  3455778889999999999999


Q ss_pred             HHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 004632          684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEE  714 (741)
Q Consensus       684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  714 (741)
                      ++|...++++++++|+++.+...+..+..+.
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998887776664443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=7.4e-05  Score=67.97  Aligned_cols=93  Identities=14%  Similarity=0.180  Sum_probs=58.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCCh
Q 004632          574 CYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDI  651 (741)
Q Consensus       574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  651 (741)
                      -+.+.+++++|+..|.++++  +.|+. +-|..-..+|++.|.++.|++-.+..+..+  |. ...|..|+.+|...|++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcH
Confidence            45566777777777777777  66643 344455556777777777777776666532  22 45666666666666666


Q ss_pred             HHHHHHHHhC-CCCCCHHHH
Q 004632          652 EGAFKMIHSM-PFPANGSIW  670 (741)
Q Consensus       652 ~~A~~~~~~~-~~~~~~~~~  670 (741)
                      ++|++.|++. ...|+..+|
T Consensus       166 ~~A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNESY  185 (304)
T ss_pred             HHHHHHHHhhhccCCCcHHH
Confidence            6666666666 445544444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.00024  Score=67.39  Aligned_cols=162  Identities=11%  Similarity=0.051  Sum_probs=117.9

Q ss_pred             HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH-----
Q 004632          566 VSWSAM-IDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY-----  638 (741)
Q Consensus       566 ~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----  638 (741)
                      .+|..+ ..++...|++++|...--...+  +.+... ....-..++...++.+.+...|++.+..+  |+...-     
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~  244 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASM  244 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhh
Confidence            444443 2456678889888888777776  444322 22222224566788889999998887643  442221     


Q ss_pred             --------HHHHHHHHhcCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 004632          639 --------ACMVDLLSRSGDIEGAFKMIHSM-PF-----PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYY  704 (741)
Q Consensus       639 --------~~l~~~~~~~~~~~~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  704 (741)
                              ..=++-..+.|++.+|.+.+.+. ..     .|+...|.....+..+.|+..+|+.--+.++.++|.-...+
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence                    11234456788999999999888 33     34455677777778899999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          705 TLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       705 ~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      ..-+.+|...++|++|++.|++..+..
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999987744

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.97  E-value=1.3e-05  Score=48.56  Aligned_cols=34  Identities=32%  Similarity=0.725  Sum_probs=29.9

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC
Q 004632          162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPD  195 (741)
Q Consensus       162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  195 (741)
                      .+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3788999999999999999999999998888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.95  E-value=1.6e-05  Score=48.14  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=27.1

Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 004632           62 MWAVLIKCYMWNNFFEESILLYHKMIREQATISN   95 (741)
Q Consensus        62 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~   95 (741)
                      +||.+|++|++.|++++|..+|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6788888888888888888888888888877763

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=3.6e-05  Score=69.90  Aligned_cols=109  Identities=12%  Similarity=0.028  Sum_probs=89.4

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 004632          607 LWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRID  684 (741)
Q Consensus       607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~  684 (741)
                      ..-+.+.++|.+|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+.. ...| ...+|..|..++...|+++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence            445778899999999999999853 335777778888999999999999998888 4444 5668999999999999999


Q ss_pred             HHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 004632          685 VMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN  716 (741)
Q Consensus       685 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  716 (741)
                      +|++.|+++++++|+|..+...|-++--+.+.
T Consensus       167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            99999999999999999888887765444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.90  E-value=2e-05  Score=47.34  Aligned_cols=33  Identities=9%  Similarity=0.173  Sum_probs=24.0

Q ss_pred             cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 004632           61 FMWAVLIKCYMWNNFFEESILLYHKMIREQATI   93 (741)
Q Consensus        61 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~   93 (741)
                      .+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.88  E-value=0.0002  Score=71.13  Aligned_cols=96  Identities=14%  Similarity=0.058  Sum_probs=75.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632          571 MIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG  649 (741)
Q Consensus       571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  649 (741)
                      ....+...|++++|+..|+++++  ..|+ ...|..+..+|...|++++|+..++++++.. +.+...|..++.+|...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            34566778999999999999998  5665 4477777778999999999999999998854 235677888899999999


Q ss_pred             ChHHHHHHHHhC-CCCCCHHH
Q 004632          650 DIEGAFKMIHSM-PFPANGSI  669 (741)
Q Consensus       650 ~~~~A~~~~~~~-~~~~~~~~  669 (741)
                      ++++|+..|+++ ...|+...
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~  105 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSR  105 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHH
Confidence            999999999888 44444333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.86  E-value=0.00016  Score=63.79  Aligned_cols=79  Identities=11%  Similarity=-0.001  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-C---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632          638 YACMVDLLSRSGDIEGAFKMIHSM-P---FPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA  712 (741)
Q Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~-~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  712 (741)
                      +..++..+...|++++|...+++. .   .++ ....+..++..+...|++++|...++++++..|.+...+..++.+|.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            333444444444444444444444 1   111 12345555666666666666666666666666666666666666666


Q ss_pred             hcCC
Q 004632          713 EEGN  716 (741)
Q Consensus       713 ~~g~  716 (741)
                      ..|+
T Consensus       118 ~~g~  121 (172)
T PRK02603        118 KRGE  121 (172)
T ss_pred             HcCC
Confidence            6555

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.85  E-value=2.6e-05  Score=46.79  Aligned_cols=33  Identities=21%  Similarity=0.535  Sum_probs=25.0

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 004632          162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEP  194 (741)
Q Consensus       162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  194 (741)
                      .+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.83  E-value=0.00051  Score=60.56  Aligned_cols=129  Identities=12%  Similarity=0.102  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHH
Q 004632          565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN--EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMV  642 (741)
Q Consensus       565 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  642 (741)
                      ...+..+...+...|++++|...|++..+....|.  ...+..+...+...|++++|...++++.+.. +-+...+..++
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            34566666667777777777777777776322222  2355666666777777777777777776632 12344555566


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632          643 DLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG  715 (741)
Q Consensus       643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  715 (741)
                      .++...|+...+..-++..                  ...+++|.++++++.+.+|++   +..++..+...|
T Consensus       114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~  165 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence            6666666655544333221                  123678888899988888887   444444444444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.81  E-value=0.00063  Score=70.59  Aligned_cols=138  Identities=9%  Similarity=0.034  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHHHH
Q 004632          563 RNVVSWSAMIDCYGM--H---GQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHS--------GSVEEGKFYFNAMRI  628 (741)
Q Consensus       563 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~  628 (741)
                      .|...|...+++...  .   ++...|..+|+++++  ..|+.. .+..+..++...        .+...+.+..++...
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            455666666655332  2   236788889999998  778754 444443333221        122333444444333


Q ss_pred             c-CCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632          629 F-GVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       629 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      . ..+.+...|..+.-.....|++++|...++++ ...|+...|..++..+...|+.++|.+.++++..++|.++.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            2 22334566777766666778888888888888 55567778888888888888888888888888888888774

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.81  E-value=2.6e-05  Score=56.23  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          678 RIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       678 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .+.|++++|...++++...+|++..++..++.+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45677777777777777777777777777777777777777777777765543

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.80  E-value=0.0024  Score=61.47  Aligned_cols=145  Identities=14%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHhccC
Q 004632          542 DMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMH-GQLNDAASLFKQMLDS----GIKPN--EVTFMNILWACSHSG  614 (741)
Q Consensus       542 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~ll~~~~~~~  614 (741)
                      ..|...|++..|-..+..           +...|... |+++.|++.|+++.+.    | .+.  ..++..+...+.+.|
T Consensus       102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~  169 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG  169 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence            456667777776655443           45556666 7788888887776642    2 221  125566666778888


Q ss_pred             CHHHHHHHHHHHHHcCCCCC-----c-cHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCC--HHHHHHHHHHHHh--
Q 004632          615 SVEEGKFYFNAMRIFGVEPD-----L-QHYACMVDLLSRSGDIEGAFKMIHSM-P----FPAN--GSIWGALLNGCRI--  679 (741)
Q Consensus       615 ~~~~a~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~----~~~~--~~~~~~l~~~~~~--  679 (741)
                      ++++|.++|+++.......+     . ..+-..+-++...|+.-.|.+.+++. .    +..+  ......++.++-.  
T Consensus       170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D  249 (282)
T PF14938_consen  170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD  249 (282)
T ss_dssp             -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence            88888888888776322211     1 12223344556677887887777775 1    1122  3345555655533  


Q ss_pred             cCCHHHHHHHHHHHhccCC
Q 004632          680 HKRIDVMKTIEKELSVTGT  698 (741)
Q Consensus       680 ~g~~~~a~~~~~~~~~~~p  698 (741)
                      ...++.+..-|+.+..++|
T Consensus       250 ~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  250 VEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             CCCHHHHCHHHTTSS---H
T ss_pred             HHHHHHHHHHHcccCccHH
Confidence            2345555555555554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.79  E-value=5.7e-05  Score=53.75  Aligned_cols=61  Identities=16%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             HHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          641 MVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       641 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      ++..+...|++++|.+.++++  ..|.+...+..++.++...|++++|...++++++..|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            567788899999999999998  3445777889999999999999999999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.76  E-value=0.00022  Score=62.67  Aligned_cols=93  Identities=8%  Similarity=-0.161  Sum_probs=70.7

Q ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 004632          635 LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA----NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSN  709 (741)
Q Consensus       635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  709 (741)
                      ...+..++..+...|++++|...+++. ...|    ...++..+...+...|++++|...+++++.+.|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            445566677777778888888887777 2212    23477888888899999999999999999999998888888888


Q ss_pred             HHh-------hcCChHHHHHHHHHH
Q 004632          710 IYA-------EEGNWDEFGKVRSIM  727 (741)
Q Consensus       710 ~~~-------~~g~~~~A~~~~~~~  727 (741)
                      +|.       ..|++++|+..+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       788888666555543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.75  E-value=0.0003  Score=54.97  Aligned_cols=91  Identities=11%  Similarity=0.019  Sum_probs=44.2

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 004632          607 LWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRID  684 (741)
Q Consensus       607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~  684 (741)
                      ...+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.+++.  ..+.+...+..++..+...|+++
T Consensus         7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence            334444455555555555444421 112233444445555555555555555544  12223345555555555666666


Q ss_pred             HHHHHHHHHhccCC
Q 004632          685 VMKTIEKELSVTGT  698 (741)
Q Consensus       685 ~a~~~~~~~~~~~p  698 (741)
                      .|...++++.+..|
T Consensus        86 ~a~~~~~~~~~~~~   99 (100)
T cd00189          86 EALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHccCC
Confidence            66666666555554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.75  E-value=0.0001  Score=54.03  Aligned_cols=58  Identities=5%  Similarity=-0.092  Sum_probs=48.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632          675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  732 (741)
                      ..+...+++++|.+++++++..+|+++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4567888888888888888888888888888888888888888888888888876543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.0099  Score=56.87  Aligned_cols=328  Identities=9%  Similarity=-0.015  Sum_probs=160.4

Q ss_pred             HHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHH
Q 004632          373 EYARKGMSKEALELLVQMQTWGLMPD-SFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNL  451 (741)
Q Consensus       373 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  451 (741)
                      .+.+..++..|+..+....+.  -|| ..-|..-...+...++++.+.--.+.-++..+..........+++...++..+
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE  135 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence            445556666777777766664  233 33333334444555555555554444444444444444444555555555555


Q ss_pred             HHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHhccccHHhHHHHHHHHHHcC
Q 004632          452 AYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCL-EMDEVTFLTAI-QACSNIGQLEKGKWVHHKLISYG  529 (741)
Q Consensus       452 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~  529 (741)
                      |...++.-     ..+           ....++..++....... +|...++..+- .++.-.|+.++|..+-....+.+
T Consensus       136 A~~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld  199 (486)
T KOG0550|consen  136 AEEKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD  199 (486)
T ss_pred             HHHHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence            55444410     000           11112222222222111 13333333332 23344566666665554444332


Q ss_pred             CCCCchhHHHHHH--HHHhcCCHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004632          530 VRKDIYIDTALTD--MYAKCGDLQTAQRVFDSMSERNVV---------------SWSAMIDCYGMHGQLNDAASLFKQML  592 (741)
Q Consensus       530 ~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~~~  592 (741)
                      ..   ..+...++  ++.-.++.+.|...|++...-++.               .+..-..-..+.|++..|.+.|.+.+
T Consensus       200 ~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal  276 (486)
T KOG0550|consen  200 AT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL  276 (486)
T ss_pred             cc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence            11   11122222  223355666777777666642221               12222233456778888888888877


Q ss_pred             HcCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 004632          593 DSGIKPN-----EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA  665 (741)
Q Consensus       593 ~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~  665 (741)
                      .  +.|+     ...|.....+..+.|+.++|+.-.++..+.  .+. ...|..-.+++...++|++|.+-+++. ....
T Consensus       277 ~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  277 N--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             c--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6  5554     334555556677778888888887777652  222 233334445566667788888877776 2111


Q ss_pred             ---CHHHHHHHHHHHHhc---------------CCHHHHHHHHHHHhccCCCCc--------hhHHHHHHHHhhcCChHH
Q 004632          666 ---NGSIWGALLNGCRIH---------------KRIDVMKTIEKELSVTGTNDN--------GYYTLLSNIYAEEGNWDE  719 (741)
Q Consensus       666 ---~~~~~~~l~~~~~~~---------------g~~~~a~~~~~~~~~~~p~~~--------~~~~~l~~~~~~~g~~~~  719 (741)
                         ...++.....++-++               .+.+.-...-+.++...|+-.        .-+...+.+|.-.++..+
T Consensus       353 s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~k  432 (486)
T KOG0550|consen  353 DCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMK  432 (486)
T ss_pred             ccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHH
Confidence               222333222222221               122222222233444445422        125667788888888888


Q ss_pred             HHHHHH
Q 004632          720 FGKVRS  725 (741)
Q Consensus       720 A~~~~~  725 (741)
                      +.++..
T Consensus       433 r~r~ds  438 (486)
T KOG0550|consen  433 RVRFDS  438 (486)
T ss_pred             Hhhccc
Confidence            776654

>PRK15331 chaperone protein SicA; Provisional

Probab=97.73  E-value=0.00069  Score=56.50  Aligned_cols=85  Identities=9%  Similarity=-0.041  Sum_probs=62.5

Q ss_pred             HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632          645 LSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK  722 (741)
Q Consensus       645 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  722 (741)
                      +...|++++|..+|+-+  -.+-+...|..|+.++...+++++|...|..+..++++|+..+...+.+|...|+.++|..
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence            44667777777777766  2344566777777777777778888888877777777777777778888888888888877


Q ss_pred             HHHHHHh
Q 004632          723 VRSIMEV  729 (741)
Q Consensus       723 ~~~~~~~  729 (741)
                      .|+...+
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            7776655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.71  E-value=5.1e-05  Score=54.66  Aligned_cols=63  Identities=17%  Similarity=0.222  Sum_probs=40.5

Q ss_pred             HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 004632          646 SRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLS  708 (741)
Q Consensus       646 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  708 (741)
                      ...|++++|++.++++  ..|.+...+..++.++.+.|++++|..+++++...+|+++.++..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3456667777777666  34456666666777777777777777777777777777665555544

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.64  E-value=0.0001  Score=55.71  Aligned_cols=79  Identities=18%  Similarity=0.266  Sum_probs=41.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHH
Q 004632          578 HGQLNDAASLFKQMLDSGIKP---NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGA  654 (741)
Q Consensus       578 ~~~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  654 (741)
                      .|+++.|+.+++++.+.  .|   +...+..+..+|.+.|++++|..+++. .+.+. .+....-.++.++.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHH
Confidence            45666666666666663  33   223344455566666666666666666 22111 1123333446666666666666


Q ss_pred             HHHHHh
Q 004632          655 FKMIHS  660 (741)
Q Consensus       655 ~~~~~~  660 (741)
                      ++.+++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.63  E-value=0.076  Score=51.79  Aligned_cols=57  Identities=11%  Similarity=0.118  Sum_probs=34.4

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHH
Q 004632          576 GMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYA  639 (741)
Q Consensus       576 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  639 (741)
                      ...|++.++.-.-..+.+  +.|++.+|..+.-+.....++++|..++..+     +|+..+++
T Consensus       473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d  529 (549)
T PF07079_consen  473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD  529 (549)
T ss_pred             HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence            345666666665555555  6666666666666666666666666666543     45555444

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.62  E-value=0.00057  Score=64.69  Aligned_cols=128  Identities=11%  Similarity=0.012  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHH
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRI----FGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM-------P-FPANGS  668 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-~~~~~~  668 (741)
                      .|..|...|.-.|+++.|+...+.-+.    .|-.. ....+..+.++++-.|+++.|.+.++..       + ......
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            577777777778999999877654433    33222 2456788999999999999999998875       2 233455


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcc----C--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVT----G--TNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ....|...|.-..++++|+.+..+=+++    +  .....++..|+.+|-..|..++|+.+.++-++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6677888888888899999887765432    2  22445788999999999999999999887665

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.59  E-value=0.012  Score=54.80  Aligned_cols=173  Identities=10%  Similarity=0.037  Sum_probs=99.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCC--CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 004632          539 ALTDMYAKCGDLQTAQRVFDSMSE--RNVV----SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV--TFMNILWAC  610 (741)
Q Consensus       539 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~  610 (741)
                      .....+...|++++|.+.|+++..  |+..    ..-.++.++.+.+++++|...+++..+  ..|+..  .+...+.+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHH
Confidence            334445567777777777777763  3221    123345566777777777777777777  444332  333333332


Q ss_pred             hc--cC---------------C---HHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 004632          611 SH--SG---------------S---VEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIW  670 (741)
Q Consensus       611 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  670 (741)
                      +.  .+               +   ..+|...|+++++.  -|+.             .-..+|...+..+...- ...-
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~l-a~~e  178 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRL-AKYE  178 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHH-HHHH
Confidence            21  11               1   12333444444431  1221             11223332222221000 0011


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ..+...+.+.|.+..|..-++.+++..|+.+   .++..+..+|.+.|..++|.++...+..
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            2345568889999999999999999998865   4688889999999999999998876643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.59  E-value=0.0023  Score=61.19  Aligned_cols=135  Identities=13%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 004632          566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWA-CSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDL  644 (741)
Q Consensus       566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  644 (741)
                      .+|..+++...+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...+...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467888888888888999999999998632 2233344444443 33457778899999999884 45577888888999


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632          645 LSRSGDIEGAFKMIHSM-PFPAN----GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       645 ~~~~~~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      +.+.++.+.|..+|++. ..-+.    ...|...+..-.+.|+.+.+.++.+++.+..|++..
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            99999999999999998 32333    358999999999999999999999999998888554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.59  E-value=0.0027  Score=66.02  Aligned_cols=133  Identities=13%  Similarity=0.034  Sum_probs=97.6

Q ss_pred             CCCCHHHHHHHHHHHh--ccC---CHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhc--------CChHHHHHHHHhC
Q 004632          596 IKPNEVTFMNILWACS--HSG---SVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRS--------GDIEGAFKMIHSM  661 (741)
Q Consensus       596 ~~p~~~~~~~ll~~~~--~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~~~  661 (741)
                      ...|...|...+.+..  ..+   +...|..+|+++.+.  .|+ ...+..+..++...        +++..+.+..++.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            4556778888888643  333   377899999999984  455 44555544444332        1234455555553


Q ss_pred             ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          662 ----PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       662 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                          ..+.++..+..+.......|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                2445667787777777788999999999999999999 57899999999999999999999999887643

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.55  E-value=0.00011  Score=42.87  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             chHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004632           62 MWAVLIKCYMWNNFFEESILLYHKMIREQ   90 (741)
Q Consensus        62 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   90 (741)
                      +||.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56777777777777777777777776655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.55  E-value=0.00088  Score=62.67  Aligned_cols=98  Identities=9%  Similarity=0.023  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHhcCChHHHHHHHHhC--CC---CCCHHHHHH
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD----LQHYACMVDLLSRSGDIEGAFKMIHSM--PF---PANGSIWGA  672 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~---~~~~~~~~~  672 (741)
                      .|...+....+.|++++|...|+.+.+..  |+    +..+..++.+|...|++++|...|+++  ..   +.....+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34444444455577777777777776632  22    245556666666777777777666666  11   223444555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          673 LLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       673 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      ++..+...|++++|...++++++..|++.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            55556666667777777776666666654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.15  Score=52.46  Aligned_cols=124  Identities=14%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----ChhhHHHHHHHhhccCChhhHHHHH
Q 004632          245 GDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEP----NLITLITVLGSCAGLGWLREGKSVH  320 (741)
Q Consensus       245 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~  320 (741)
                      |++++|++++-.+..+|..     |....+.|++-...++++.-   |-..    -...|+.+...+.....++.|.+.|
T Consensus       748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY  819 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY  819 (1189)
T ss_pred             cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777666655432     34444555555555544321   1111    1124555555555555555555555


Q ss_pred             HHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHH
Q 004632          321 CQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELL  387 (741)
Q Consensus       321 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  387 (741)
                      ..-..          ....+..+.+..++++-+.+.+.+++ +....-.+.+++.+.|.-++|.+.+
T Consensus       820 ~~~~~----------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  820 SYCGD----------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             Hhccc----------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence            43211          12234444444444444444444443 2233444555555555555555544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.52  E-value=6.4e-05  Score=44.52  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632          689 IEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK  722 (741)
Q Consensus       689 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  722 (741)
                      +++++++++|+++.+|..|+.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3688999999999999999999999999999863

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.51  E-value=0.0053  Score=51.11  Aligned_cols=90  Identities=10%  Similarity=0.022  Sum_probs=49.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632          569 SAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR  647 (741)
Q Consensus       569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (741)
                      -.+..-+...|++++|.++|+-+..  +.|... -|..|..+|-..|++++|+..|..+.... +-++..+-.++.++..
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence            3344444556666666666666555  455433 34444445555566666666666665543 2345555556666666


Q ss_pred             cCChHHHHHHHHhC
Q 004632          648 SGDIEGAFKMIHSM  661 (741)
Q Consensus       648 ~~~~~~A~~~~~~~  661 (741)
                      .|+.+.|.+.|+..
T Consensus       116 lG~~~~A~~aF~~A  129 (157)
T PRK15363        116 CDNVCYAIKALKAV  129 (157)
T ss_pred             cCCHHHHHHHHHHH
Confidence            66666666655544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.51  E-value=0.0015  Score=52.35  Aligned_cols=88  Identities=17%  Similarity=0.164  Sum_probs=43.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCC---CHHHHHHHHHHHH
Q 004632          606 ILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPA---NGSIWGALLNGCR  678 (741)
Q Consensus       606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~---~~~~~~~l~~~~~  678 (741)
                      +..++-..|+.++|+.+|++....|...+  ...+-.+...|...|++++|..++++.  .+|.   +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34455556666666666666666554332  223344555555555555555555554  1111   2222222333445


Q ss_pred             hcCCHHHHHHHHHHH
Q 004632          679 IHKRIDVMKTIEKEL  693 (741)
Q Consensus       679 ~~g~~~~a~~~~~~~  693 (741)
                      ..|+.++|.+.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            555555555554443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.50  E-value=0.00014  Score=42.43  Aligned_cols=31  Identities=29%  Similarity=0.632  Sum_probs=23.6

Q ss_pred             eeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 004632          162 VSWSSIIASYFDNADVSEGLKMFHSMVREGV  192 (741)
Q Consensus       162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  192 (741)
                      ++|+.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3677888888888888888888888877653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.50  E-value=0.0021  Score=56.48  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN--EVTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      .|..+...+...|++++|+..|++.......|.  ..++..+...+...|++++|+..+++..+
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444445555555555555555555554211111  12444444555555555555555555554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.48  E-value=0.11  Score=50.04  Aligned_cols=96  Identities=9%  Similarity=0.152  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC--cc
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-----EV-TFMNILWACSHSGSVEEGKFYFNAMRIF--GVEPD--LQ  636 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~  636 (741)
                      ++..+...+.+.|++++|.++|++....-...+     .. .+...+-++...|+...|.+.+++....  ++..+  ..
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            344566777888888888888888776432211     11 2223333556678888888888887652  33222  23


Q ss_pred             HHHHHHHHHHh--cCChHHHHHHHHhCC
Q 004632          637 HYACMVDLLSR--SGDIEGAFKMIHSMP  662 (741)
Q Consensus       637 ~~~~l~~~~~~--~~~~~~A~~~~~~~~  662 (741)
                      ....|+.++-.  ...+++|+.-|+++.
T Consensus       237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            45556666643  224566666666663

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.46  E-value=0.037  Score=56.12  Aligned_cols=67  Identities=13%  Similarity=0.058  Sum_probs=34.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004632          606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDV  685 (741)
Q Consensus       606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  685 (741)
                      ++..+...++|++|..+-++.-+  +.||  .|....+.++...++++|.+.                   +.++|+..+
T Consensus       779 iVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFeEAqkA-------------------fhkAGr~~E  835 (1081)
T KOG1538|consen  779 LVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFEEAQKA-------------------FHKAGRQRE  835 (1081)
T ss_pred             HhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHHHHHHH-------------------HHHhcchHH
Confidence            34444555555555544443211  1222  233344444555555555444                   355677778


Q ss_pred             HHHHHHHHhc
Q 004632          686 MKTIEKELSV  695 (741)
Q Consensus       686 a~~~~~~~~~  695 (741)
                      |..+++++..
T Consensus       836 A~~vLeQLtn  845 (1081)
T KOG1538|consen  836 AVQVLEQLTN  845 (1081)
T ss_pred             HHHHHHHhhh
Confidence            8888877653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.42  E-value=0.00026  Score=51.13  Aligned_cols=64  Identities=11%  Similarity=0.002  Sum_probs=50.6

Q ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 004632          635 LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK-RIDVMKTIEKELSVTGT  698 (741)
Q Consensus       635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p  698 (741)
                      ...|..++..+...|++++|+..|++.  -.|.+...+..++.++...| ++++|++.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            456777788888888888888888887  34456778888888888888 68888888888888877

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.41  E-value=0.00073  Score=66.22  Aligned_cols=66  Identities=8%  Similarity=-0.210  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          664 PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY---YTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       664 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      |.+...+++++.++.+.|++++|+..++++++++|++..+   |+.++.+|...|+.++|++.+++..+
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455566666666666666666666666666666666533   66666666666666666666666655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.39  E-value=0.047  Score=55.41  Aligned_cols=120  Identities=18%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             CCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHh
Q 004632          127 DKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEAC  206 (741)
Q Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  206 (741)
                      .+....+.+-+..|..+|.+++|.++----  -....|..|......+=+++-|.+.|.+.+..       -|..+    
T Consensus       553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------~~L~l----  619 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERGLFKEAYQIACLG--VTDTDWRELAMEALEALDFETARKAYIRVRDL-------RYLEL----  619 (1081)
T ss_pred             ecccccccccchhhhhccchhhhhcccccc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------HHHHH----
Confidence            344445555566777888888776542110  01123555544444444555555554443321       01111    


Q ss_pred             cccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 004632          207 GELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFV  286 (741)
Q Consensus       207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  286 (741)
                               ..-++.+.+.|-.|+...   +...++-.|.+.+|-++|.+                  .|.-..|+++|.
T Consensus       620 ---------i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyT  669 (1081)
T KOG1538|consen  620 ---------ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYT  669 (1081)
T ss_pred             ---------HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHH
Confidence                     122455566666666543   34456667888888877664                  455566666666


Q ss_pred             HHH
Q 004632          287 KML  289 (741)
Q Consensus       287 ~m~  289 (741)
                      .|+
T Consensus       670 DlR  672 (1081)
T KOG1538|consen  670 DLR  672 (1081)
T ss_pred             HHH
Confidence            553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.34  E-value=0.0028  Score=59.34  Aligned_cols=84  Identities=7%  Similarity=-0.118  Sum_probs=45.0

Q ss_pred             HhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCCh
Q 004632          646 SRSGDIEGAFKMIHSM-PFPAN----GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNW  717 (741)
Q Consensus       646 ~~~~~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~  717 (741)
                      .+.|++++|+..|+.. ..-|+    +..+..++.++...|++++|...|+++.+..|+++   .++..++.+|...|++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence            4445566666555555 11121    23455555555666666666666666665555432   3344445555566666


Q ss_pred             HHHHHHHHHHHh
Q 004632          718 DEFGKVRSIMEV  729 (741)
Q Consensus       718 ~~A~~~~~~~~~  729 (741)
                      ++|..+|+++.+
T Consensus       234 ~~A~~~~~~vi~  245 (263)
T PRK10803        234 AKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.33  E-value=0.0022  Score=63.69  Aligned_cols=118  Identities=10%  Similarity=0.066  Sum_probs=85.1

Q ss_pred             CCChhhhhHHHHHhHhcCChhHHHHHHccCCC-C-----CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHH
Q 004632          127 DKDDVIQTSILCTYGEFGCLDDARKVFDKMTS-R-----DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTML  200 (741)
Q Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  200 (741)
                      +.+......++.......+++.+..++-+.++ |     -..|.+++++.|...|..+.++.+++.=...|+-||..|++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            33444455556666666667777777666653 1     12356688888888888888888888888888889988998


Q ss_pred             HHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 004632          201 SLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKC  244 (741)
Q Consensus       201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  244 (741)
                      .+|+.+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888888888888777666666655555444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.32  E-value=0.17  Score=48.50  Aligned_cols=256  Identities=14%  Similarity=0.088  Sum_probs=151.7

Q ss_pred             CcccHHHHHHH--HHHcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHH
Q 004632          363 NILSWNMLISE--YARKGMSKEALELLVQMQTWGLMPDSF--SVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSS  438 (741)
Q Consensus       363 ~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  438 (741)
                      |......++.+  -.-.|+++.|.+-|+.|...   |...  -+..+.-...+.|..+.|.++-+..-..-+........
T Consensus       117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A  193 (531)
T COG3898         117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA  193 (531)
T ss_pred             cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence            44444444443  34478899999999998752   2222  12233333457788888888888888777777777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHhccC-----CCch--HHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 004632          439 LIDMYSKCGFKNLAYLLFERIQQ-----KSVV--MWNSMICGFY---QNGNSLEAINLFHQMYLNCLEMDEVT-FLTAIQ  507 (741)
Q Consensus       439 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~  507 (741)
                      .+...+..|+|+.|+++++.-..     ++..  .-..|+.+-.   -..+...|...-.+..+  +.||..- -.....
T Consensus       194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAr  271 (531)
T COG3898         194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAAR  271 (531)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHH
Confidence            88888888888888888875432     2221  1112222111   12234444444433333  4455332 223445


Q ss_pred             HHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH----HHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 004632          508 ACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTA----QRVFDSMSERNVVSWSAMIDCYGMHGQLND  583 (741)
Q Consensus       508 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  583 (741)
                      ++.+.|+..++-.+++.+-+..+.|++..    +-.+.+.|+....    .+-+..|+..+..+...+..+-...|++..
T Consensus       272 alf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~  347 (531)
T COG3898         272 ALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA  347 (531)
T ss_pred             HHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence            67777888888888887777666655421    2223445543211    122444555666666667777777777777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHc
Q 004632          584 AASLFKQMLDSGIKPNEVTFMNILWA-CSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       584 A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~  629 (741)
                      |..--+....  ..|....|..|.+. -...|+-.++...+.+..+.
T Consensus       348 ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         348 ARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            7666666655  56777777766664 34447777777777777663

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.31  E-value=0.0033  Score=60.18  Aligned_cols=129  Identities=12%  Similarity=0.150  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 004632          601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR-SGDIEGAFKMIHSM--PFPANGSIWGALLNGC  677 (741)
Q Consensus       601 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~  677 (741)
                      .+|..++...-+.+..+.|..+|.++++.+ ..+..+|...+..-.+ .++.+.|.++|+..  .++.+...|..++..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            357778888888888999999999998632 3355666666666444 46666699999998  5778899999999999


Q ss_pred             HhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          678 RIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       678 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .+.++.+.|..+|++++..-|.+.   .+|...+..=.+.|+.+...++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999998877655   57888888888899999999999988773

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.31  E-value=0.27  Score=50.69  Aligned_cols=153  Identities=12%  Similarity=0.078  Sum_probs=94.8

Q ss_pred             cCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----cchHHHHHHHHHhcCChhHHHH
Q 004632          209 LCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRC-----TTSWTAMISCYNRSGWFQKALE  283 (741)
Q Consensus       209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~  283 (741)
                      -|++++|+++|-.+-++.         .-|.++.+.||+-...++++.-...+     ..+|+.+...++....|++|.+
T Consensus       747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~  817 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK  817 (1189)
T ss_pred             hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367777777776655442         34566777788777777776533211     2268888888888888888888


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 004632          284 SFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERN  363 (741)
Q Consensus       284 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  363 (741)
                      .|..-..         -...+.++....++++.+.+.+.      .|++..+...+..++.+.|--++|.+.|-+...|.
T Consensus       818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk  882 (1189)
T KOG2041|consen  818 YYSYCGD---------TENQIECLYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK  882 (1189)
T ss_pred             HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH
Confidence            7765321         12234455444444443333322      25788888889999998888887777766554442


Q ss_pred             cccHHHHHHHHHHcCCchHHHHHHHHH
Q 004632          364 ILSWNMLISEYARKGMSKEALELLVQM  390 (741)
Q Consensus       364 ~~~~~~li~~~~~~~~~~~a~~~~~~m  390 (741)
                           +.+..|...+++.+|.++-+..
T Consensus       883 -----aAv~tCv~LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  883 -----AAVHTCVELNQWGEAVELAQRF  904 (1189)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHhc
Confidence                 2344455556666666655443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.31  E-value=0.0018  Score=49.67  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             HHHHHHHhCCChhHHHHHHHHhHHCCC-CCChhhHHHHHHHhcccC--------ChhhHHHHHHHHHHhcCCCchHHHHH
Q 004632          166 SIIASYFDNADVSEGLKMFHSMVREGV-EPDFVTMLSLAEACGELC--------SLRPARSIHGHVLRRKIKIDGPLGNS  236 (741)
Q Consensus       166 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~  236 (741)
                      ..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .......+|+.++..+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            345556667999999999999999999 899999999999987643        23446788999999999999999999


Q ss_pred             HHHHHHh
Q 004632          237 FIVMYSK  243 (741)
Q Consensus       237 li~~~~~  243 (741)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            9887754

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.30  E-value=0.0033  Score=53.68  Aligned_cols=115  Identities=14%  Similarity=0.046  Sum_probs=74.8

Q ss_pred             HhccCCHHHHHHHHHHHHH--cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004632          610 CSHSGSVEEGKFYFNAMRI--FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMK  687 (741)
Q Consensus       610 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  687 (741)
                      ....++.+.+...++++..  .|........         ..........+++.    -..+...++..+...|++++|.
T Consensus        16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~   82 (146)
T PF03704_consen   16 AARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL   82 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence            3456788888888888877  3322111011         11222222223222    1234566777788999999999


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCccCCC
Q 004632          688 TIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV-----TGLKKVPG  737 (741)
Q Consensus       688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~  737 (741)
                      ..+++++..+|-+...|..++.+|...|+..+|+++|+++.+     .|+.|.|.
T Consensus        83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            999999999999999999999999999999999999998754     47766653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.28  E-value=0.056  Score=45.81  Aligned_cols=94  Identities=9%  Similarity=0.104  Sum_probs=38.4

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 004632          533 DIYIDTALTDMYAKCGDLQTAQRVFDSMSE----RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN---EVTFMN  605 (741)
Q Consensus       533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~  605 (741)
                      ++..-..+..+....|+..+|...|++...    .|....-.+.++....+++..|...++++-+.  .|+   ..+...
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~Ll  165 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHLL  165 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchHH
Confidence            333333344444444444444444443331    23333444444444444444444444444442  121   112223


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHH
Q 004632          606 ILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       606 ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      +.+.+...|++.+|..-|+...+
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHH
Confidence            33344444444444444444444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.28  E-value=0.0035  Score=59.60  Aligned_cols=83  Identities=13%  Similarity=0.079  Sum_probs=44.2

Q ss_pred             HHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHH--H--hcCC--cchhHHHHHHH
Q 004632          373 EYARKGMSKEALELLVQMQTWGLMPDS----FSVASSLSACGNVGSLQLGLQIHGHVI--K--IDCK--DEFVQSSLIDM  442 (741)
Q Consensus       373 ~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~--~~~~~~~l~~~  442 (741)
                      -+++.|+......+|+...+.|- .|.    ..|..+..++.-.+++++|.+++..=+  .  .+..  .......+.+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            35667777777777777776652 232    234444555666677777776654311  1  1111  11134445555


Q ss_pred             HHhcCCHHHHHHHH
Q 004632          443 YSKCGFKNLAYLLF  456 (741)
Q Consensus       443 ~~~~~~~~~a~~~~  456 (741)
                      +.-.|.+++|....
T Consensus       105 lKv~G~fdeA~~cc  118 (639)
T KOG1130|consen  105 LKVKGAFDEALTCC  118 (639)
T ss_pred             hhhhcccchHHHHH
Confidence            55566666665443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.28  E-value=0.067  Score=49.85  Aligned_cols=63  Identities=16%  Similarity=0.028  Sum_probs=37.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccccHHhHHHHHHHHHHcCCCCC
Q 004632          470 MICGFYQNGNSLEAINLFHQMYLNCLEMDEVTF---LTAIQACSNIGQLEKGKWVHHKLISYGVRKD  533 (741)
Q Consensus       470 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  533 (741)
                      ....+...|++++|.+.|+++...-..+ ....   -.+..++.+.++++.|...+++.++..+...
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            3444556777777777777776642222 2221   2345566677777777777777766544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.27  E-value=0.001  Score=48.61  Aligned_cols=66  Identities=12%  Similarity=0.060  Sum_probs=52.0

Q ss_pred             HHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632          642 VDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL  707 (741)
Q Consensus       642 ~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  707 (741)
                      ...|.+.+++++|.++++++  -.|.+...+...+.++...|++++|.+.++++++..|+++......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            35677888888888888888  3455677778888888899999999999999999998877654433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.27  E-value=0.0045  Score=47.52  Aligned_cols=80  Identities=10%  Similarity=0.024  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------cHHhHHHHHHHHHHcCCCCCchhH
Q 004632          467 WNSMICGFYQNGNSLEAINLFHQMYLNCL-EMDEVTFLTAIQACSNIG--------QLEKGKWVHHKLISYGVRKDIYID  537 (741)
Q Consensus       467 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~  537 (741)
                      ....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..        .....+.+|+.|...+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34456666777999999999999999999 899999999999876532        344567788999999999999999


Q ss_pred             HHHHHHHHh
Q 004632          538 TALTDMYAK  546 (741)
Q Consensus       538 ~~l~~~~~~  546 (741)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            998887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.24  E-value=0.00059  Score=43.57  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 004632          668 SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSN  709 (741)
Q Consensus       668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  709 (741)
                      .++..+..++...|++++|+++++++++.+|+|+.++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467788999999999999999999999999999999988874

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.24  E-value=0.23  Score=48.46  Aligned_cols=133  Identities=14%  Similarity=0.164  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH-HHHHH
Q 004632          566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSG-IKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY-ACMVD  643 (741)
Q Consensus       566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~  643 (741)
                      ..|...+..-.+....+.|..+|-++.+.| +.++...++.++..++ .|+...|-.+|+.-...  -||...| +..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            345666666666667777777777777776 4556667777776554 36777777777765542  2333332 34455


Q ss_pred             HHHhcCChHHHHHHHHhC--CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          644 LLSRSGDIEGAFKMIHSM--PFP--ANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       644 ~~~~~~~~~~A~~~~~~~--~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      .+.+.++-+.|..+|+..  ...  .-...|..++..-..-|+...+..+-+++.+..|+..
T Consensus       475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen  536 (660)
T COG5107         475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN  536 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence            566777777777777754  112  2245677777777777777777777777777777643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.023  Score=50.85  Aligned_cols=134  Identities=7%  Similarity=0.000  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH-----HH
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC-----MV  642 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~  642 (741)
                      -++++.++.-.|.+.-...++++.++....-++.....|.+.-.+.|+.+.|..+|++..+..-..+....+.     ..
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3455566666777888888888888854333556667777777888888888888887776322334333332     23


Q ss_pred             HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          643 DLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       643 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      ..+.-.+++.+|...+.++  ..+.++...++-.-+..-.|+...|.+.++.+.+..|...
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            3455566777888888777  2344566666666666667888888888888888888743

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.22  E-value=0.012  Score=47.23  Aligned_cols=91  Identities=15%  Similarity=0.051  Sum_probs=57.4

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHHHHhcCC---cchhHHHHHHHHH
Q 004632          370 LISEYARKGMSKEALELLVQMQTWGLMPDS--FSVASSLSACGNVGSLQLGLQIHGHVIKIDCK---DEFVQSSLIDMYS  444 (741)
Q Consensus       370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~  444 (741)
                      +..++-..|+.++|+.+|++....|...+.  ..+..+..++...|++++|..+++......+.   ...+...+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            344566677888888888888777665442  23444555577777777777777777766554   2224444555666


Q ss_pred             hcCCHHHHHHHHHhcc
Q 004632          445 KCGFKNLAYLLFERIQ  460 (741)
Q Consensus       445 ~~~~~~~a~~~~~~~~  460 (741)
                      ..|+.++|...+-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            6677777666655443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.0049  Score=59.12  Aligned_cols=137  Identities=10%  Similarity=-0.042  Sum_probs=99.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCh
Q 004632          572 IDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDI  651 (741)
Q Consensus       572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  651 (741)
                      ...|.+.|++..|...|++++..  -+....           -+.++......        .-...+..+.-+|.+.+++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~~~-----------~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF--LEYRRS-----------FDEEEQKKAEA--------LKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH--hhcccc-----------CCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence            45677777787777777776652  111110           01111111111        1123466788899999999


Q ss_pred             HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 004632          652 EGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF-GKVRSIME  728 (741)
Q Consensus       652 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~  728 (741)
                      .+|++..++.  -.+++...+..-+.++...|+++.|...|+++++++|.|..+-..|+.+--+...+++. .++|..|.
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888  45678889999999999999999999999999999999999999998877776665554 78898887


Q ss_pred             h
Q 004632          729 V  729 (741)
Q Consensus       729 ~  729 (741)
                      .
T Consensus       354 ~  354 (397)
T KOG0543|consen  354 A  354 (397)
T ss_pred             h
Confidence            6

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.17  E-value=0.26  Score=47.82  Aligned_cols=76  Identities=14%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 004632          544 YAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYF  623 (741)
Q Consensus       544 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  623 (741)
                      +...|+...|.++..+..-|+..-|...+.+++..++|++-.++...      .-++..|..++.+|.+.|+..+|..+.
T Consensus       187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI  260 (319)
T PF04840_consen  187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYI  260 (319)
T ss_pred             HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence            34445555555555555445555555555555555555444433211      112244444455555555555554444


Q ss_pred             HH
Q 004632          624 NA  625 (741)
Q Consensus       624 ~~  625 (741)
                      .+
T Consensus       261 ~k  262 (319)
T PF04840_consen  261 PK  262 (319)
T ss_pred             Hh
Confidence            43

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.14  E-value=0.18  Score=49.35  Aligned_cols=158  Identities=12%  Similarity=0.020  Sum_probs=83.0

Q ss_pred             HHHHhcCCHHHHHHHHHhcCCC-------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004632          542 DMYAKCGDLQTAQRVFDSMSER-------NVVSWSAMIDCYGM---HGQLNDAASLFKQMLDSGIKPNEVTFMNILWACS  611 (741)
Q Consensus       542 ~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~  611 (741)
                      -.|-...+++...++++.+..+       ....-....-++-+   .|+.++|+.++..+....-.++..++..+.+.|-
T Consensus       149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK  228 (374)
T PF13281_consen  149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK  228 (374)
T ss_pred             HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            3455555555555555555531       11111122333444   5666666666666544444555555555554431


Q ss_pred             ----c-----cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChH----HHHHHH---HhC-------CCCCCHH
Q 004632          612 ----H-----SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIE----GAFKMI---HSM-------PFPANGS  668 (741)
Q Consensus       612 ----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~---~~~-------~~~~~~~  668 (741)
                          .     ....++|+..|.+.-+  +.|+.++=-.++..+...|...    +..++-   ...       ....+-.
T Consensus       229 D~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW  306 (374)
T PF13281_consen  229 DLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW  306 (374)
T ss_pred             HHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence                1     1235566666666554  2244332223333333344321    222222   111       1233444


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      .+.+++.++.-.|++++|.+.++++.++.|+.-
T Consensus       307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            557788888999999999999999999987754

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.14  E-value=0.013  Score=58.37  Aligned_cols=93  Identities=16%  Similarity=0.255  Sum_probs=41.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 004632          468 NSMICGFYQNGNSLEAINLFHQMYLN--CLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA  545 (741)
Q Consensus       468 ~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  545 (741)
                      ..+++......+.+.+..++.+....  ....-+.|..++++.|.+.|..+.+..++..=...|+-||..+++.+|+.+.
T Consensus        70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl  149 (429)
T PF10037_consen   70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL  149 (429)
T ss_pred             HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence            33333333344444444444444432  1111222333444444444444444444444444444444444444444444


Q ss_pred             hcCCHHHHHHHHHhc
Q 004632          546 KCGDLQTAQRVFDSM  560 (741)
Q Consensus       546 ~~g~~~~A~~~~~~~  560 (741)
                      +.|++..|.++...|
T Consensus       150 ~~~~~~~A~~V~~~~  164 (429)
T PF10037_consen  150 KKGNYKSAAKVATEM  164 (429)
T ss_pred             hcccHHHHHHHHHHH
Confidence            444444444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.08  E-value=0.01  Score=48.47  Aligned_cols=90  Identities=11%  Similarity=0.026  Sum_probs=69.3

Q ss_pred             HHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHh
Q 004632          641 MVDLLSRSGDIEGAFKMIHSM----PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG---YYTLLSNIYA  712 (741)
Q Consensus       641 l~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~  712 (741)
                      -+....+.|++++|.+.|+.+    +..+ ...+-..++.++.+.+++++|...+++.++++|.++.   ++...+-+++
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            344556788999999999888    2222 4556778889999999999999999999999998775   3666666677


Q ss_pred             hcCC---------------hHHHHHHHHHHHhC
Q 004632          713 EEGN---------------WDEFGKVRSIMEVT  730 (741)
Q Consensus       713 ~~g~---------------~~~A~~~~~~~~~~  730 (741)
                      +...               ..+|...|+++.++
T Consensus        96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            7665               67788888877664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.031  Score=51.78  Aligned_cols=105  Identities=10%  Similarity=-0.018  Sum_probs=79.9

Q ss_pred             CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---ChHHHHHHHHhC--CCCCCHHHH
Q 004632          597 KP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG---DIEGAFKMIHSM--PFPANGSIW  670 (741)
Q Consensus       597 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~  670 (741)
                      .| |...|..|...|...|+++.|..-|....+.. .+++..+..+..++....   ...++..+|+++  ..+.+..+.
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            45 55688888888888889998888888888732 245666777777665443   346788888888  455577777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632          671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      .-|...+...|++.+|...++.+++..|.+..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            77888889999999999999999988887664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.02  E-value=0.0011  Score=49.18  Aligned_cols=63  Identities=14%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          667 GSIWGALLNGCRIHKRIDVMKTIEKELSVT----GTND---NGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      ..++..+...+...|++++|+..+++++++    ++++   ..++..++.+|...|++++|++++++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            346777888888888888888888888754    2222   35688999999999999999999998754

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.00  E-value=0.38  Score=46.70  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             HHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632          440 IDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK  519 (741)
Q Consensus       440 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  519 (741)
                      +.-+...|+...|.++-.+..-|+...|-..+.+++..++|++-..+-..      +-++..|-.++.+|.+.|+..+|.
T Consensus       184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~  257 (319)
T PF04840_consen  184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS  257 (319)
T ss_pred             HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence            33334445555555555554445555555555555555555444332211      112234444444444444444444


Q ss_pred             HHHH
Q 004632          520 WVHH  523 (741)
Q Consensus       520 ~~~~  523 (741)
                      .+..
T Consensus       258 ~yI~  261 (319)
T PF04840_consen  258 KYIP  261 (319)
T ss_pred             HHHH
Confidence            4443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.98  E-value=0.0096  Score=52.12  Aligned_cols=96  Identities=19%  Similarity=0.149  Sum_probs=75.1

Q ss_pred             HHHHhc--cCCCchHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 004632          454 LLFERI--QQKSVVMWNSMICGFYQ-----NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNI--------------  512 (741)
Q Consensus       454 ~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------------  512 (741)
                      ..|+..  ...+..+|..++..|.+     .|..+-....++.|.+-|+.-|..+|+.|++.+-+.              
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            344444  34567778888888765     467788888899999999999999999999988652              


Q ss_pred             --ccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 004632          513 --GQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGD  549 (741)
Q Consensus       513 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  549 (741)
                        .+.+-|..++++|...|+-||..++..+++.+++.+.
T Consensus       115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence              2345678899999999999999999988888876553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.0091  Score=54.46  Aligned_cols=102  Identities=15%  Similarity=-0.001  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHH
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRIFGV--EPDLQHYACMVDLLSRSGDIEGAFKMIHSM-----PFPANGSIWGALL  674 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~l~  674 (741)
                      .|+.-+. +.+.|++..|...|...++...  .-....+-+|++++...|++++|...|..+     +.+.-++.+..++
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4554444 3456778888888888877321  223556777888888888888888888777     2344567778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 004632          675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYY  704 (741)
Q Consensus       675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  704 (741)
                      ......|+.++|...|+++.+..|+.+.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            888888888888888888888888876543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.89  E-value=0.038  Score=50.08  Aligned_cols=161  Identities=12%  Similarity=0.072  Sum_probs=84.1

Q ss_pred             HHHhcCCHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--c
Q 004632          543 MYAKCGDLQTAQRVFDSMSE--RN----VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV--TFMNILWACS--H  612 (741)
Q Consensus       543 ~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~--~  612 (741)
                      .+...|++++|...|+.+..  |+    ....-.++.++.+.|+++.|...++++++  ..|+..  .+...+.+.+  .
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~~~   91 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSYYK   91 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHHH
Confidence            34455666666666665552  21    22344556666677777777777777666  334322  1222222111  1


Q ss_pred             -----------cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004632          613 -----------SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHK  681 (741)
Q Consensus       613 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g  681 (741)
                                 .+...+|...|+.+++               -|=...-..+|...+..+.. .-...-..++..+.+.|
T Consensus        92 ~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~-~la~~e~~ia~~Y~~~~  155 (203)
T PF13525_consen   92 QIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRN-RLAEHELYIARFYYKRG  155 (203)
T ss_dssp             HHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHCTT
T ss_pred             hCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcc
Confidence                       1112233444444433               22222333333333333310 00111123556688999


Q ss_pred             CHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHH
Q 004632          682 RIDVMKTIEKELSVTGTNDNG---YYTLLSNIYAEEGNWDEFG  721 (741)
Q Consensus       682 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~  721 (741)
                      .+..|...++.+++..|+.+.   ++..++.+|.+.|..+.|.
T Consensus       156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999999999998764   5788889999999988554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.76  Score=48.22  Aligned_cols=327  Identities=10%  Similarity=0.035  Sum_probs=165.6

Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC--hHHHHHHHHHHHHhcCCcchhHHHHHHHHHh
Q 004632          368 NMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGS--LQLGLQIHGHVIKIDCKDEFVQSSLIDMYSK  445 (741)
Q Consensus       368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  445 (741)
                      ..+++-+...+.+..|+++-..+...-..- ...|........+..+  -+.+.+.+..-+.....+...|..++.-...
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~  519 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ  519 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence            345677777888888888877764321111 3444444443333221  2222222222222223333377788888888


Q ss_pred             cCCHHHHHHHHHhccCC--------CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHh
Q 004632          446 CGFKNLAYLLFERIQQK--------SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEK  517 (741)
Q Consensus       446 ~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  517 (741)
                      +|+.+-|..+++.-+..        +..-+...+.-..+.|+.+-...++-.+..+-   +...+...      ..+...
T Consensus       520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~  590 (829)
T KOG2280|consen  520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPL  590 (829)
T ss_pred             cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchh
Confidence            99999999888754332        22334455556666777777666665554321   11111111      122333


Q ss_pred             HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCH----------
Q 004632          518 GKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSM------SERNVVSWSAMIDCYGMHGQL----------  581 (741)
Q Consensus       518 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~~~~----------  581 (741)
                      |..+|.+..+..-.      ..+-+.|-...+...+-.+.-+-      .++-..........+.+....          
T Consensus       591 a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~  664 (829)
T KOG2280|consen  591 ALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ  664 (829)
T ss_pred             hhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            44444433321100      01111222222222221111111      011111222223333333221          


Q ss_pred             HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHh
Q 004632          582 NDAASLFKQMLD-SGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS  660 (741)
Q Consensus       582 ~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  660 (741)
                      .+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-++.+    .||...|-.-+.++...++|++-+++-+.
T Consensus       665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks  740 (829)
T KOG2280|consen  665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS  740 (829)
T ss_pred             HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence            111222222221 1222333355555556667778888877766653    46777777777788888888887777777


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632          661 MPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       661 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                      .+.   +.-|.=...+|.+.|+..+|.+++-+...+        .....+|.+.|++.+|.+.--
T Consensus       741 kks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  741 KKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             cCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence            643   333444667778888888888776554221        156677888888888876543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.087  Score=47.37  Aligned_cols=135  Identities=15%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHH-----
Q 004632          466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTAL-----  540 (741)
Q Consensus       466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----  540 (741)
                      .-+.++..+.-.|.+.-...++++.++...+.++.....+.+.-.+.||.+.|...++...+..-..+...++.+     
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344556666667778888888888888766677777788888888888888888888877654333333333333     


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004632          541 TDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVT  602 (741)
Q Consensus       541 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~  602 (741)
                      ...|.-++++..|...+.++..   .|+..-|.-.-+..-.|+..+|++.++.|.+  ..|...+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l  321 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL  321 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence            2345556778888888877764   3444555544455556788888888888887  4554443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.81  E-value=0.0064  Score=53.20  Aligned_cols=97  Identities=11%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             HHhhccC--CCCCccchHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcC-------------
Q 004632           49 RLVFDTF--KEPDSFMWAVLIKCYMW-----NNFFEESILLYHKMIREQATISNFIYPSVLRACSSL-------------  108 (741)
Q Consensus        49 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------------  108 (741)
                      ...|+..  ...+-.+|..+++.+.+     .|+.+=....+..|.+.|+.-|..+|+.||..+=+.             
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3455554  34666777777777654     356666667788888888888888888888877542             


Q ss_pred             ---CChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCC
Q 004632          109 ---GDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGC  145 (741)
Q Consensus       109 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  145 (741)
                         ...+-+.+++++|...|+-||..++..++..+++.+.
T Consensus       114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence               1345578888888888888888888888888877665

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.89  Score=47.77  Aligned_cols=97  Identities=9%  Similarity=-0.062  Sum_probs=59.1

Q ss_pred             CCCCCChhhHHH-----HHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcC---ChHHHHHHHHhcCC-
Q 004632          291 VKEEPNLITLIT-----VLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECG---KMSECEKVIHAIGE-  361 (741)
Q Consensus       291 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-  361 (741)
                      -|++.+..-|..     +|+-+...+.+..|.++-..+...... . ..++...+..+.+..   +.+-+..+-+++.. 
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-G-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-c-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            356555554443     445555667777777776555432221 2 566666666666653   23334444455555 


Q ss_pred             -CCcccHHHHHHHHHHcCCchHHHHHHHH
Q 004632          362 -RNILSWNMLISEYARKGMSKEALELLVQ  389 (741)
Q Consensus       362 -~~~~~~~~li~~~~~~~~~~~a~~~~~~  389 (741)
                       ....+|..........|+++.|..+++.
T Consensus       504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~  532 (829)
T KOG2280|consen  504 LTPGISYAAIARRAYQEGRFELARKLLEL  532 (829)
T ss_pred             CCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence             4566788888888888888888877764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.76  E-value=0.41  Score=43.41  Aligned_cols=59  Identities=20%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcC
Q 004632          471 ICGFYQNGNSLEAINLFHQMYLNCL--EMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYG  529 (741)
Q Consensus       471 ~~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  529 (741)
                      ...+...|++.+|...|+.+.....  +--....-.++.++.+.|+++.|...++.+++.-
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3344556666666666666654311  1112233345555566666666666666655543

>PRK11906 transcriptional regulator; Provisional

Probab=96.75  E-value=0.078  Score=52.63  Aligned_cols=144  Identities=9%  Similarity=-0.003  Sum_probs=97.8

Q ss_pred             CHHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 004632          580 QLNDAASLFKQMLD-SGIKPNEV-TFMNILWACSH---------SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS  648 (741)
Q Consensus       580 ~~~~A~~~~~~~~~-~~~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  648 (741)
                      ..+.|+.+|.+... ..+.|+.. .|..+..++..         ..+..+|.+..++..+.+ +-|+.....++.++.-.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            35677888888881 12667643 44444333321         234556777777777755 34677777788877888


Q ss_pred             CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh--HHHHHHHHhhcCChHHHHHHH
Q 004632          649 GDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY--YTLLSNIYAEEGNWDEFGKVR  724 (741)
Q Consensus       649 ~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~  724 (741)
                      ++++.|...|++. . .|.....|......+...|+.++|.+.++++.+++|....+  .......|+..+ .++|+.+|
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence            8899999999988 3 44566778888888888999999999999999999985544  333444566655 45555554


Q ss_pred             H
Q 004632          725 S  725 (741)
Q Consensus       725 ~  725 (741)
                      -
T Consensus       431 ~  431 (458)
T PRK11906        431 Y  431 (458)
T ss_pred             h
Confidence            4

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.01  Score=57.07  Aligned_cols=65  Identities=8%  Similarity=-0.190  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      ..++.++..++.+.+++..|+..-.+.++++|+|.-+++.-+.+|...|+++.|...|+++++..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~  321 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE  321 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            34677888889999999999999999999999999999999999999999999999999998743

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.65  E-value=0.6  Score=43.83  Aligned_cols=192  Identities=13%  Similarity=0.055  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 004632          537 DTALTDMYAKCGDLQTAQRVFDSMS-----ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW-AC  610 (741)
Q Consensus       537 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-~~  610 (741)
                      .......+...+++..+...+....     ......+......+...+++..+...+.........+ ......... .+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  140 (291)
T COG0457          62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL  140 (291)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence            3334444444444444444444332     1223334444444444555555555555555422111 111111112 44


Q ss_pred             hccCCHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCChHHHHHHHHhC-CC-CC-CHHHHHHHHHHHHhcCCHHH
Q 004632          611 SHSGSVEEGKFYFNAMRIFGV--EPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PF-PA-NGSIWGALLNGCRIHKRIDV  685 (741)
Q Consensus       611 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~-~~~~~~~l~~~~~~~g~~~~  685 (741)
                      ...|+++.+...+.+......  ......+......+...++.++|...+.+. .. +. ....+..+...+...++++.
T Consensus       141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (291)
T COG0457         141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE  220 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence            555555555555555533110  011222222222334445555555555555 21 22 24445555555555555566


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          686 MKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       686 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +...+..+....|.....+..++..+...|+.+++...+++..+
T Consensus       221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666555555555444444455455544555555555554433

>PRK11906 transcriptional regulator; Provisional

Probab=96.59  E-value=0.04  Score=54.58  Aligned_cols=115  Identities=9%  Similarity=0.048  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHH-cCCCCC-ccHHHHHHHHHHhc---------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 004632          615 SVEEGKFYFNAMRI-FGVEPD-LQHYACMVDLLSRS---------GDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK  681 (741)
Q Consensus       615 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g  681 (741)
                      ..+.|..+|.+... ....|+ ...|..+..++...         ....+|.+..++.  -.+.|+.+...++.+..-.+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            45678888998884 334555 55566665555432         2344666666666  34567888888888888888


Q ss_pred             CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          682 RIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       682 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +++.|...++++..++|+.+.+|...++++.-.|+.++|.+.+++..+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999997554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=1.4  Score=47.06  Aligned_cols=120  Identities=9%  Similarity=0.011  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHccCChhhHHHhhccCCCCCccch---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhc
Q 004632           31 ASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMW---AVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSS  107 (741)
Q Consensus        31 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  107 (741)
                      ...+-|+.+.+..-+..|..+-+.-..+....-   .....-+.+.|++++|...|-+-+.. +.|     ..++.-|..
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd  409 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD  409 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence            445667888888888888887776443322222   22233456788888888877775532 122     345666777


Q ss_pred             CCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCC
Q 004632          108 LGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT  157 (741)
Q Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  157 (741)
                      ..+..+....++.+.+.|+.. ..--..|+.+|.+.++.+...++.+...
T Consensus       410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            777777788888888888543 3344567888888888888888777665

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.54  E-value=0.29  Score=38.98  Aligned_cols=141  Identities=13%  Similarity=0.167  Sum_probs=84.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHH
Q 004632          575 YGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGA  654 (741)
Q Consensus       575 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  654 (741)
                      ....|..++..++..+....   .+..-++.++--....-+-+-..+.++.+   |-..|..          .+|+....
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrV   75 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRV   75 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHH
Confidence            34568888888888887763   23334444443333333334444444443   3233322          23444444


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632          655 FKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK  733 (741)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  733 (741)
                      ...+-.+.  .........+..+..+|.-+.-.+++..+.+.+..+|.++.-++.+|.+.|+..+|.+++.+.-++|++
T Consensus        76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            44444442  345566667888899999999999999988767778899999999999999999999999999999975

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.50  E-value=0.033  Score=43.94  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=45.2

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHH---HHHHHHHHHHhcCC
Q 004632          609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM---PFPANGS---IWGALLNGCRIHKR  682 (741)
Q Consensus       609 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~---~~~~l~~~~~~~g~  682 (741)
                      ++...|+.+.|++.|.+.+..- +-....||.-..++--.|+.++|++-+++.   ..+....   .+..-...|+..|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            4455566666666666555521 223445555555555556666665555554   1111111   22233333555556


Q ss_pred             HHHHHHHHHHHhccCCC
Q 004632          683 IDVMKTIEKELSVTGTN  699 (741)
Q Consensus       683 ~~~a~~~~~~~~~~~p~  699 (741)
                      .+.|..-|+.+.+++..
T Consensus       131 dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGSK  147 (175)
T ss_pred             hHHHHHhHHHHHHhCCH
Confidence            66666666555555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.50  E-value=0.03  Score=51.20  Aligned_cols=95  Identities=15%  Similarity=0.036  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHH
Q 004632          637 HYACMVDLLSRSGDIEGAFKMIHSM--PF---PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLS  708 (741)
Q Consensus       637 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~  708 (741)
                      .|+.-++. .+.|++.+|...|...  +.   .-.+..+..|+.++...|++++|...|..+.+..|+++   ..+.-|+
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            57766654 4678899999999887  22   23455777899999999999999999999999887755   5689999


Q ss_pred             HHHhhcCChHHHHHHHHHHHhCCC
Q 004632          709 NIYAEEGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       709 ~~~~~~g~~~~A~~~~~~~~~~~~  732 (741)
                      .+..+.|+.++|..+|+++.++-.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCC
Confidence            999999999999999999988543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.49  E-value=0.034  Score=52.32  Aligned_cols=162  Identities=11%  Similarity=0.055  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC---C--CccH
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQMLDS-GIKPNE---VTFMNILWACSHSGSVEEGKFYFNAMRIFGVE---P--DLQH  637 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~  637 (741)
                      .|..+.+++-+.-++.+++.+-+.-... |..|..   ....++..++...+.++++++.|+.+.+....   |  ...+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            3444445554444555555554443331 222211   12233445666666777777777777662111   1  1345


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CC
Q 004632          638 YACMVDLLSRSGDIEGAFKMIHSM-------PFPAN-----GSIWGALLNGCRIHKRIDVMKTIEKELSVTG------TN  699 (741)
Q Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~  699 (741)
                      +-.|...|.+..++++|.-+..++       +...-     ......+.-+++..|..-.|.+.-+++.++.      |-
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            666777777777777665555444       21111     1233445556777777777777766665432      11


Q ss_pred             CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          700 DNGYYTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       700 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      .......++++|-..|+.+.|..-|+...
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            22345566777777777777777776643

>PRK15331 chaperone protein SicA; Provisional

Probab=96.45  E-value=0.04  Score=46.27  Aligned_cols=88  Identities=6%  Similarity=0.015  Sum_probs=59.7

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 004632          607 LWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRID  684 (741)
Q Consensus       607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~  684 (741)
                      ..-+...|++++|..+|+-+...++ .+..-+..|+.++...+++++|+..+...  -.+.|+......+.++...|+.+
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence            3344567788888888877766442 24445566777777777888888777766  12345555666777777788888


Q ss_pred             HHHHHHHHHhc
Q 004632          685 VMKTIEKELSV  695 (741)
Q Consensus       685 ~a~~~~~~~~~  695 (741)
                      .|+..|+.+.+
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            88888877776

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.33  Score=43.41  Aligned_cols=46  Identities=17%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             HHhcCCHHHHHHHHHHHhc----cCCCCchhHHHHHHHHhhcCChHHHHHH
Q 004632          677 CRIHKRIDVMKTIEKELSV----TGTNDNGYYTLLSNIYAEEGNWDEFGKV  723 (741)
Q Consensus       677 ~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~  723 (741)
                      +.-..|+..|+.+++..-+    ..|++..+...|... +..||.+++.++
T Consensus       200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kv  249 (308)
T KOG1585|consen  200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKV  249 (308)
T ss_pred             HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHH
Confidence            3344455555555555332    223444445555432 344555554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.39  E-value=0.0043  Score=45.97  Aligned_cols=27  Identities=4%  Similarity=-0.248  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      ++..++.++...|++++|++.++++.+
T Consensus        48 ~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   48 TLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            445555555556666666666555543

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.24  E-value=0.038  Score=47.09  Aligned_cols=71  Identities=20%  Similarity=0.358  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCccHHH
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRI-----FGVEPDLQHYA  639 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  639 (741)
                      +...++..+...|++++|..+++++..  ..| |...|..++.+|...|+..+|.+.|+++.+     .|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            445566667778888888888888887  556 455788888888888888888888877754     57777765543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.28  Score=45.47  Aligned_cols=164  Identities=14%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 004632          552 TAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFG  630 (741)
Q Consensus       552 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  630 (741)
                      ...+++++...+....--.-.......|+..+|...|+....  ..|+ ......+..+|...|+.+.|..++..+-...
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            444455554443222122222334455666666666666655  2332 2344445556666666666666655442211


Q ss_pred             CCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCchhHHHH
Q 004632          631 VEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG--TNDNGYYTLL  707 (741)
Q Consensus       631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l  707 (741)
                      -.........-+..+.+.....+...+-.+. ..|.|...-..+...+...|+.++|.+.+-.+++.+  -++...-..|
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            0111111122233444444444444444444 223345555555555555666666655555554432  3344555555


Q ss_pred             HHHHhhcCCh
Q 004632          708 SNIYAEEGNW  717 (741)
Q Consensus       708 ~~~~~~~g~~  717 (741)
                      ..++.-.|..
T Consensus       279 le~f~~~g~~  288 (304)
T COG3118         279 LELFEAFGPA  288 (304)
T ss_pred             HHHHHhcCCC
Confidence            5555555533

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.18  E-value=0.98  Score=41.23  Aligned_cols=58  Identities=14%  Similarity=0.010  Sum_probs=45.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDNG---YYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .++..+.+.|.+..|..-++.+++..|+.+.   .+..+..+|.+.|..++|.+.-+-+..
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            3455678899999999999999988777554   467777889999999999887665544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.52  Score=43.79  Aligned_cols=120  Identities=9%  Similarity=0.016  Sum_probs=81.5

Q ss_pred             HHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 004632          609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGA---LLNGCRIHKRIDV  685 (741)
Q Consensus       609 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~  685 (741)
                      .....|++.+|...|+....... -+......++++|...|+.+.|..++..++.......+..   -+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            45677888888888888887432 2355666788888899999999999988854443333333   2333334333333


Q ss_pred             HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          686 MKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       686 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      ... +++-...+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus       222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            322 23334678888888888888999999999988877666553

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.17  E-value=1.9  Score=44.40  Aligned_cols=180  Identities=13%  Similarity=0.109  Sum_probs=111.7

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004632          534 IYIDTALTDMYAKCGDLQTAQRVFDSMSERN---VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWAC  610 (741)
Q Consensus       534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~  610 (741)
                      ..+|...++--.+.|+.+.+.-+|+...-|-   ...|-..+.-....|+.+-|..++....+-.++-.+.+-..-...+
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~  376 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE  376 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence            4556666666777888888888888777542   2345445554455588888888777776643222222222222234


Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHH----HHHHHHH-HHhc
Q 004632          611 SHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAF---KMIHSM-PFPANGSI----WGALLNG-CRIH  680 (741)
Q Consensus       611 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~---~~~~~~-~~~~~~~~----~~~l~~~-~~~~  680 (741)
                      ...|+++.|..+++.+.+.-  |+ ...-..-+....+.|+.+.+.   +++... ...-+...    +....+. +.-.
T Consensus       377 e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~  454 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR  454 (577)
T ss_pred             HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence            56678999999998888742  33 222223344556778888777   444444 22222222    2222332 3446


Q ss_pred             CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632          681 KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG  715 (741)
Q Consensus       681 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  715 (741)
                      ++.+.|..++.++.+..|++...|..+.......+
T Consensus       455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            78888999999999999988888888877766554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.15  E-value=0.95  Score=44.50  Aligned_cols=72  Identities=11%  Similarity=0.018  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhccCC-------CchHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004632          438 SLIDMYSKCGFKNLAYLLFERIQQK-------SVVMWNSMICGFYQ---NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQ  507 (741)
Q Consensus       438 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~  507 (741)
                      .++-.|....+++..+++.+.+...       ....-.....++.+   .|+.++|++++..+....-.+++.+|..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3334455666666666666665543       11122233344455   6777777777777555555666667666655


Q ss_pred             HH
Q 004632          508 AC  509 (741)
Q Consensus       508 ~~  509 (741)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            44

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.13  E-value=0.33  Score=46.01  Aligned_cols=124  Identities=11%  Similarity=0.114  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC-------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC-CH-H---
Q 004632          538 TALTDMYAKCGDLQTAQRVFDSMSE-------R--NVVSWSAMIDCYGMHGQLNDAASLFKQMLDS--GIKP-NE-V---  601 (741)
Q Consensus       538 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p-~~-~---  601 (741)
                      ..+..++...+.++++++.|+...+       |  ....+..|...|.+.+|+++|.-+..++.+.  .+.. |. .   
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr  205 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR  205 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence            3455556666667777777765542       1  2346777777788888888887776665541  1111 11 1   


Q ss_pred             --HHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          602 --TFMNILWACSHSGSVEEGKFYFNAMRI----FGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       602 --~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                        +...+.-++-..|+..+|.+..++..+    .|-.+. ......+.++|-..|+.|.|+.-++.+
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence              223344467777888888888887766    332221 334556778888888888887777665

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.94  E-value=0.032  Score=47.75  Aligned_cols=125  Identities=8%  Similarity=-0.031  Sum_probs=76.7

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 004632          607 LWACSHSGSVEEGKFYFNAMRIFGVEPD----LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIH  680 (741)
Q Consensus       607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~  680 (741)
                      ..-+...|++++|.+-|.+++..-....    ...|..-+.++.+.+.++.|++-..+. ...| ....+..-..+|-+.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            3456778888888888888887422111    234555556677778888887777666 3333 333444445556677


Q ss_pred             CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH--HHHHHHHhCC
Q 004632          681 KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFG--KVRSIMEVTG  731 (741)
Q Consensus       681 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~~  731 (741)
                      ..+++|++-|+++++.+|....+-...+.+--......+++  ++..++++.|
T Consensus       182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG  234 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG  234 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            77888888888888888876665555554444444444333  3455555543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=1  Score=40.09  Aligned_cols=21  Identities=0%  Similarity=-0.254  Sum_probs=11.3

Q ss_pred             CCHHHHHHHHHHHhccCCCCc
Q 004632          681 KRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       681 g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      .|.-.+...+++-.+++|.-.
T Consensus       209 ~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  209 ADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             ccHHHHHHHHHHHHhcCCccc
Confidence            444555555555555555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.69  E-value=0.39  Score=47.97  Aligned_cols=69  Identities=13%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCCchhHHHH
Q 004632          639 ACMVDLLSRSGDIEGAFKMIHSM-P-FPA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVT-GTNDNGYYTLL  707 (741)
Q Consensus       639 ~~l~~~~~~~~~~~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l  707 (741)
                      ..+..++.+.|+.++|++.++++ + +++  ...+...|+.++...+.+.++..++.+--+. -|+++.+.+.-
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa  336 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA  336 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence            34666667777778887777777 2 222  2335667777777777777777777776544 35555544443

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.63  E-value=0.67  Score=48.19  Aligned_cols=159  Identities=12%  Similarity=0.050  Sum_probs=98.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHHHHcCCCCCccHH
Q 004632          569 SAMIDCYGMHGQLNDAASLFKQMLDSG-IKPNE-----VTFMNILWACS----HSGSVEEGKFYFNAMRIFGVEPDLQHY  638 (741)
Q Consensus       569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~-----~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~  638 (741)
                      ..++....-.||-+.+++.+.+..+.+ +.-..     -.|...+..++    .....+.|.++++.+.+.  -|+...|
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf  269 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF  269 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence            344444455566666666666655421 11111     12333333222    245677788888888763  3454443


Q ss_pred             H-HHHHHHHhcCChHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH-HHHHH
Q 004632          639 A-CMVDLLSRSGDIEGAFKMIHSMP------FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYT-LLSNI  710 (741)
Q Consensus       639 ~-~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~  710 (741)
                      . .-++.+...|+.++|++.++++-      .+-....+..+++.+.-..++++|...+.++.+.+.-+..+|. ..+-+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            3 34556677888888888888751      1122345566777788889999999999998887766555544 44555


Q ss_pred             HhhcCCh-------HHHHHHHHHHHh
Q 004632          711 YAEEGNW-------DEFGKVRSIMEV  729 (741)
Q Consensus       711 ~~~~g~~-------~~A~~~~~~~~~  729 (741)
                      |...|+.       ++|.+++.+..+
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHH
Confidence            6677888       888888887655

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.62  E-value=0.49  Score=47.15  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004632          565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV----TFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       565 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      ...|+.+..+|...|++++|+..|++.++  +.|+..    +|..+..+|...|+.++|+..++++++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555556666666666666666555  455432    355555556666666666666665555

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.59  E-value=1.2  Score=37.61  Aligned_cols=119  Identities=14%  Similarity=0.099  Sum_probs=82.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHH-----HHHHHhc
Q 004632          575 YGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACM-----VDLLSRS  648 (741)
Q Consensus       575 ~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~  648 (741)
                      +++.+..++|+..|..+.+.|...=+. ............|+...|+..|+++-.....|-  ....+     .-.+...
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~--~~rd~ARlraa~lLvD~  145 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ--IGRDLARLRAAYLLVDN  145 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc--hhhHHHHHHHHHHHhcc
Confidence            356778888999999888876442221 222333356788999999999999876332232  22222     2345678


Q ss_pred             CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          649 GDIEGAFKMIHSM---PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       649 ~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      |.+++....++-+   +.+-....-..|.-+..+.|++..|.+.|+++..
T Consensus       146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            8999988888888   3334455667888888999999999999998876

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.63  Score=43.72  Aligned_cols=160  Identities=13%  Similarity=-0.045  Sum_probs=108.4

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccH----HHHHHHHHHhcCCh
Q 004632          576 GMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQH----YACMVDLLSRSGDI  651 (741)
Q Consensus       576 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~  651 (741)
                      .-+|+..+|...++++.+. .+.|...+...=.+|...|+...-...++++... -.+|...    -..+.-++..+|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3467777888888888874 3446667777777888889988888888888762 1234332    23445566788999


Q ss_pred             HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----chhHHHHHHHHhhcCChHHHHHHHH
Q 004632          652 EGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTND----NGYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       652 ~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                      ++|.+.-++. . .+.|.-...+....+...|+..++.++..+-...=.++    ..-|-..+-.|...+.++.|+++|+
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999988888 3 34456666777777888889988888877654322111    1124445556777889999999998


Q ss_pred             HHHhCCCccCCC
Q 004632          726 IMEVTGLKKVPG  737 (741)
Q Consensus       726 ~~~~~~~~~~~~  737 (741)
                      +=+-+.+.++.+
T Consensus       272 ~ei~k~l~k~Da  283 (491)
T KOG2610|consen  272 REIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhhccch
Confidence            754444444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.43  E-value=0.086  Score=41.69  Aligned_cols=91  Identities=14%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             HHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----hhHHHHHHHHhhc
Q 004632          641 MVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN----GYYTLLSNIYAEE  714 (741)
Q Consensus       641 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~  714 (741)
                      -.-++...|+.+.|++.|.+.  -.|..+..|++-..+++-+|+.++|+.-+++++++.-+..    ..|..-+.+|-..
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            345677899999999999888  3566889999999999999999999999999998754433    3578888899999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 004632          715 GNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       715 g~~~~A~~~~~~~~~~~  731 (741)
                      |+.+.|..-|+...+.|
T Consensus       129 g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLG  145 (175)
T ss_pred             CchHHHHHhHHHHHHhC
Confidence            99999999999988766

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.37  E-value=3.2  Score=41.04  Aligned_cols=124  Identities=16%  Similarity=0.258  Sum_probs=96.5

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 004632          534 IYIDTALTDMYAKCGDLQTAQRVFDSMSE-----RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTF-MNIL  607 (741)
Q Consensus       534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~ll  607 (741)
                      ..+|...++...+...++.|+.+|-++.+     +++..+++++..++ .|++..|..+|+--..  ..||...| .-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence            45677888888888899999999998874     67888999998776 5788899999998776  45666544 3455


Q ss_pred             HHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          608 WACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       608 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      ..+...++-..|..+|+..... +..+  ..+|..+++.-..-|+...+..+=+++
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf  528 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF  528 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence            6677889999999999966552 1222  568888888888889998888887777

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.37  E-value=0.51  Score=38.87  Aligned_cols=117  Identities=14%  Similarity=0.015  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 004632          571 MIDCYGMHGQLNDAASLFKQMLDSGIKP--NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS  648 (741)
Q Consensus       571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  648 (741)
                      -.....+.|++++|.+.|+.+...-..+  ....-..++.+|.+.+++++|...+++.++.++.....-|.....+++.-
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            3344556788888888888887742111  12355566778888888888888888888744332333444455554443


Q ss_pred             CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632          649 GDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       649 ~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~  702 (741)
                      ...+..+.-+-  ...             ...+....|..-|++++...|++.-
T Consensus        96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence            33222221111  111             1223356888889999999998763

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.36  E-value=0.041  Score=32.52  Aligned_cols=31  Identities=10%  Similarity=-0.066  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      .+..++..+...|++++|++.++++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            3444555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.31  E-value=0.39  Score=49.87  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=15.0

Q ss_pred             HHHHHHHhccccHHhHHHHHHHHHH
Q 004632          503 LTAIQACSNIGQLEKGKWVHHKLIS  527 (741)
Q Consensus       503 ~~ll~~~~~~~~~~~a~~~~~~~~~  527 (741)
                      ..++....-.||.+.+.+.+....+
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~  216 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASK  216 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhc
Confidence            3445555556777777776666544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.17  E-value=2.8  Score=39.15  Aligned_cols=198  Identities=12%  Similarity=0.057  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhccccHHhHHHHHHHHHHc-CCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCH-HHHHHHHH-H
Q 004632          500 VTFLTAIQACSNIGQLEKGKWVHHKLISY-GVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNV-VSWSAMID-C  574 (741)
Q Consensus       500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~  574 (741)
                      ..+......+...+....+...+...... ........+......+...++...+...+.....  ++. ........ .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            34444444555555555555555544332 2223334444455555566666677777666653  221 22222223 6


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 004632          575 YGMHGQLNDAASLFKQMLDSGIKP----NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD  650 (741)
Q Consensus       575 ~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  650 (741)
                      +...|+++.|...+++...  ..|    ....+......+...++++.+...+..............+..+...+...++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            7788899999999988866  444    2234444444567788999999999988874321135677778888888889


Q ss_pred             hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632          651 IEGAFKMIHSM-PFPAN-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       651 ~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      +++|...+... ...|+ ...+......+...++.+.+...+.+.....|.
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999888 33343 455566666656777899999999999998887

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.16  E-value=1.7  Score=36.59  Aligned_cols=126  Identities=7%  Similarity=0.026  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR  647 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (741)
                      ...++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++.      ..+.......++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            3456666666778888888888888765 345567777888777653 3444444442      1234445557778888


Q ss_pred             cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632          648 SGDIEGAFKMIHSMPFPANGSIWGALLNGCRIH-KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA  712 (741)
Q Consensus       648 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  712 (741)
                      .+-++++..++.+++.      +...+..+... ++++.|.++.++     +.++..|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            8888888888888753      12223333334 788888888776     345667777776554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.53  Score=44.22  Aligned_cols=155  Identities=7%  Similarity=-0.015  Sum_probs=114.5

Q ss_pred             HhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHhccCCHH
Q 004632          545 AKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNI----LWACSHSGSVE  617 (741)
Q Consensus       545 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l----l~~~~~~~~~~  617 (741)
                      .-.|++.+|...++++.+   .|..++..--.+|...|+.+.-...+++.... ..||.+.|..+    .-++...|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            346777788778888774   47778888888999999999999999998864 57777554433    23567889999


Q ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004632          618 EGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN------GSIWGALLNGCRIHKRIDVMKTIEK  691 (741)
Q Consensus       618 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~  691 (741)
                      +|++.-++..+.+ +.|...-.++...+...|+..++.++..+-...-+      ...|-...-.+.+.+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999999998854 45677777888889999999999999988732111      1123344445667799999999998


Q ss_pred             HHh--ccCCCCc
Q 004632          692 ELS--VTGTNDN  701 (741)
Q Consensus       692 ~~~--~~~p~~~  701 (741)
                      +-+  ++..+|.
T Consensus       272 ~ei~k~l~k~Da  283 (491)
T KOG2610|consen  272 REIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhhccch
Confidence            654  3444444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.15  E-value=0.037  Score=32.73  Aligned_cols=31  Identities=6%  Similarity=-0.152  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      +|..++.++...|++++|+..++++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4555555566666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.12  E-value=0.3  Score=39.78  Aligned_cols=50  Identities=6%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHH
Q 004632          596 IKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLL  645 (741)
Q Consensus       596 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~  645 (741)
                      +.|+..+...++.+|+..|++..|.++.+...+ .+++.+...|..|++-.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            455666666666666666777777776666666 55555566666665543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.11  E-value=4.8  Score=41.61  Aligned_cols=127  Identities=13%  Similarity=0.120  Sum_probs=71.4

Q ss_pred             cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHH
Q 004632           61 FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNF-IYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCT  139 (741)
Q Consensus        61 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  139 (741)
                      ..|..+|.---.....+.+...+..++..  .|.-. -|.....-=.+.|..+.+..+|++-.. |++.+...|...+..
T Consensus        46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f  122 (577)
T KOG1258|consen   46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF  122 (577)
T ss_pred             cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence            44555555444444444555555555533  22221 222333333455677777777777664 445555566555544


Q ss_pred             hH-hcCChhHHHHHHccCCC------CCceeHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 004632          140 YG-EFGCLDDARKVFDKMTS------RDVVSWSSIIASYFDNADVSEGLKMFHSMVRE  190 (741)
Q Consensus       140 ~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  190 (741)
                      +. ..|+.+.....|+....      .+...|...|..-...+++.....+++..++.
T Consensus       123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            33 34666666666665543      23446777777777777888888888777653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=2.5  Score=38.07  Aligned_cols=20  Identities=10%  Similarity=0.001  Sum_probs=10.4

Q ss_pred             HHHHHHhcCChHHHHHHHHH
Q 004632          470 MICGFYQNGNSLEAINLFHQ  489 (741)
Q Consensus       470 l~~~~~~~g~~~~A~~~~~~  489 (741)
                      -...|...|.++-|-..+++
T Consensus        97 As~lY~E~GspdtAAmaleK  116 (308)
T KOG1585|consen   97 ASELYVECGSPDTAAMALEK  116 (308)
T ss_pred             HHHHHHHhCCcchHHHHHHH
Confidence            34455555555555544444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.91  E-value=2  Score=43.30  Aligned_cols=102  Identities=8%  Similarity=-0.062  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHH--HHHHHHH
Q 004632          601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSMPF--PANGS--IWGALLN  675 (741)
Q Consensus       601 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~--~~~~l~~  675 (741)
                      .+-..+..++.+.|+.++|++.+++|.+..... ...+...|+.++...+.+.++..++.+...  -|...  +|...+-
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            344456667788999999999999998743222 244677899999999999999999998831  23333  3333332


Q ss_pred             HHHhcCC---------------HHHHHHHHHHHhccCCCCch
Q 004632          676 GCRIHKR---------------IDVMKTIEKELSVTGTNDNG  702 (741)
Q Consensus       676 ~~~~~g~---------------~~~a~~~~~~~~~~~p~~~~  702 (741)
                      -.+..++               -..|.+.+.++.+.+|.-+.
T Consensus       340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            2222232               12466788888888877553

The molecular function of this protein is uncertain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.81  E-value=7.1  Score=42.08  Aligned_cols=118  Identities=13%  Similarity=0.084  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 004632          235 NSFIVMYSKCGDLLSAERTFVKIEKRCTT---SWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLG  311 (741)
Q Consensus       235 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~  311 (741)
                      ..-++.+++..-++-|..+-+.-..+...   ........+.+.|++++|...|-+-+.. +.|     ..++.-+....
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq  411 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ  411 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence            44555666666666676665544332111   3444456677889999999888765432 222     23455555556


Q ss_pred             ChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC
Q 004632          312 WLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG  360 (741)
Q Consensus       312 ~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  360 (741)
                      ....-..+++.+.+.|+.  +..-...|+.+|.+.++.++-.+..+...
T Consensus       412 ~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  412 RIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            666667778888888864  33344567777777777777666666555

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.75  E-value=0.06  Score=32.34  Aligned_cols=26  Identities=15%  Similarity=0.229  Sum_probs=21.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          703 YYTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       703 ~~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      ++..|+.+|.+.|++++|+++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46789999999999999999999855

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.72  E-value=0.93  Score=46.37  Aligned_cols=159  Identities=14%  Similarity=0.107  Sum_probs=100.7

Q ss_pred             HHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 004632          473 GFYQNGNSLEAINLFHQMY-LNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQ  551 (741)
Q Consensus       473 ~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  551 (741)
                      ...-.++++++.++...-. -..+ | ..-...++.-+.+.|..+.|.++...-            ..-.+...+.|+++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~  335 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLD  335 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HH
T ss_pred             HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHH
Confidence            3445677777666654111 1111 1 334566677777778777777664322            12345667889999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 004632          552 TAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGV  631 (741)
Q Consensus       552 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  631 (741)
                      .|.++.++..  +...|..|.......|+++-|++.|++..+         +..|+-.|...|+.+...++.+.....|-
T Consensus       336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            9988877665  666899999999999999999998887544         44566667778888888888877776552


Q ss_pred             CCCccHHHHHHHHHHhcCChHHHHHHHHhCC
Q 004632          632 EPDLQHYACMVDLLSRSGDIEGAFKMIHSMP  662 (741)
Q Consensus       632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  662 (741)
                            ++....++.-.|+.++..+++.+.+
T Consensus       405 ------~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  405 ------INIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                  4555566667788888888887775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.69  E-value=1  Score=38.00  Aligned_cols=129  Identities=11%  Similarity=0.012  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH-----HH
Q 004632          601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDL-QHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWG-----AL  673 (741)
Q Consensus       601 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~-----~l  673 (741)
                      ..|...+. +.+.+..++|+.-|..+.+.|...-+ -............|+...|...|.++ ...|.+....     .-
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            34444443 35668889999999999985543221 11223445667889999999999999 3333333332     22


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          674 LNGCRIHKRIDVMKTIEKELSV-TGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       674 ~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      ...+..+|.++......+-+.. .+|-....-..|+-+-++.|++.+|...|+.+...
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            3346789999998888776653 34545567888999999999999999999998763

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.52  E-value=0.37  Score=43.99  Aligned_cols=98  Identities=13%  Similarity=0.053  Sum_probs=75.8

Q ss_pred             HHHHHhcc--CCCchHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc------------
Q 004632          453 YLLFERIQ--QKSVVMWNSMICGFYQN-----GNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG------------  513 (741)
Q Consensus       453 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------  513 (741)
                      +..|....  ++|..+|-..+..+...     +.++-....++.|.+.|+.-|..+|+.++..+-+..            
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            33444444  34666777777766543     566677777889999999999999999998886533            


Q ss_pred             ----cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 004632          514 ----QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDL  550 (741)
Q Consensus       514 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  550 (741)
                          +-.-+..++++|..+|+.||..+-..+++++++.+-.
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence                2345788999999999999999999999999987754

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.49  E-value=8.9  Score=41.74  Aligned_cols=126  Identities=10%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             hcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHH
Q 004632          577 MHGQLNDAASLFKQMLDSG-IKPNEV--TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEG  653 (741)
Q Consensus       577 ~~~~~~~A~~~~~~~~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  653 (741)
                      ...+.+.|...+....... +.+...  ....+.......+...++...++.....  ..+......-+....+.++++.
T Consensus       253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~  330 (644)
T PRK11619        253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG  330 (644)
T ss_pred             HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence            3456788888888775432 333222  3333333333332255666666654332  2355556666666668888888


Q ss_pred             HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 004632          654 AFKMIHSMP--FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLS  708 (741)
Q Consensus       654 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  708 (741)
                      +...+..|+  ......-..-+++++...|+.++|...|+++..  +  ..+|-.|+
T Consensus       331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA  383 (644)
T PRK11619        331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA  383 (644)
T ss_pred             HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence            888888883  223444556677776778888888888888743  2  23666665

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.46  E-value=6.1  Score=39.73  Aligned_cols=150  Identities=10%  Similarity=-0.010  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccH
Q 004632          563 RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP---NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQH  637 (741)
Q Consensus       563 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~  637 (741)
                      ....+|..++..+.+.|+++.|...+.++...+..+   .+.....-+......|+..+|+..++...+..+..+  ...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            345678888888888888888888888887743221   223344445566777888888888888776222222  111


Q ss_pred             HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 004632          638 YACMVDLLSRSGDIEGAFKM-IHSMPFPANGSIWGALLNGCRIH------KRIDVMKTIEKELSVTGTNDNGYYTLLSNI  710 (741)
Q Consensus       638 ~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  710 (741)
                      ...+...+..  ..+..... ...........++..++..+...      +..+++...|+++.+..|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111100  00000000 00000001122334444444444      788999999999999999998888888887


Q ss_pred             Hhhc
Q 004632          711 YAEE  714 (741)
Q Consensus       711 ~~~~  714 (741)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            7654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.37  E-value=1  Score=36.75  Aligned_cols=93  Identities=20%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 004632          498 DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSM--SERNVVSWSAMIDCY  575 (741)
Q Consensus       498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~  575 (741)
                      |..++..++.++++.|+.+....+.+..  .|+.++...         ..+.       +..-  .-|+..+..+++.+|
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf   62 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF   62 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence            4566777788888888877777766544  233322110         0000       1111  138899999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 004632          576 GMHGQLNDAASLFKQMLDS-GIKPNEVTFMNILW  608 (741)
Q Consensus       576 ~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~  608 (741)
                      +..|++..|+++++...+. ++.-+...|..|+.
T Consensus        63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            9999999999999998864 44446678888888

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.18  E-value=1.7  Score=37.79  Aligned_cols=114  Identities=4%  Similarity=-0.040  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH-----HHHHHHHHhcCChHHHH
Q 004632          583 DAASLFKQMLDSGIKPNEVTFM--NILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY-----ACMVDLLSRSGDIEGAF  655 (741)
Q Consensus       583 ~A~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~  655 (741)
                      +.....+++....-......+.  .+...+...|++++|+..++..+..   |....+     -.|.+.....|.+|+|+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL  146 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL  146 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4555556666532111222222  3344678888999998888877652   222222     24566777888999999


Q ss_pred             HHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632          656 KMIHSMPFP-ANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN  699 (741)
Q Consensus       656 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~  699 (741)
                      ..++....+ -.+.....-+..+...|+.++|...|+++++..+.
T Consensus       147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            999887422 23333455567788889999999999998887744

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.07  E-value=0.86  Score=39.47  Aligned_cols=91  Identities=12%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHH
Q 004632          572 IDCYGMHGQLNDAASLFKQMLDSGIKPNE------VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDL  644 (741)
Q Consensus       572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  644 (741)
                      ..-+...|++++|..-|.++++  ..|..      ..|..-..++.+.+.++.|+.-..+.++.+  |+ ...+..-..+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAea  177 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEA  177 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHH
Confidence            3446778888888888888887  34432      234444556777888888888887777644  22 2223333456


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCC
Q 004632          645 LSRSGDIEGAFKMIHSM-PFPAN  666 (741)
Q Consensus       645 ~~~~~~~~~A~~~~~~~-~~~~~  666 (741)
                      |.+..++++|++-|+++ ...|.
T Consensus       178 yek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcc
Confidence            77777888888888777 33343

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.96  E-value=0.31  Score=45.61  Aligned_cols=62  Identities=15%  Similarity=0.057  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          668 SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .++..++..+...|+.+.+.+.++++...+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34556677777788888888888888888888888888888888888888888888888766

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.54  E-value=0.43  Score=39.28  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=25.2

Q ss_pred             cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          680 HKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       680 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .++.+++..+++.+.-+.|+.+..-..-++.+...|+|.+|..+++.+.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS   72 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence            44455555555555555555554444445555555555555555554444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.51  E-value=0.43  Score=43.61  Aligned_cols=109  Identities=12%  Similarity=0.111  Sum_probs=78.6

Q ss_pred             HHhhccCC--CCCccchHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCC------------
Q 004632           49 RLVFDTFK--EPDSFMWAVLIKCYMW-----NNFFEESILLYHKMIREQATISNFIYPSVLRACSSLG------------  109 (741)
Q Consensus        49 ~~~~~~~~--~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------  109 (741)
                      +..|..++  +.+-.+|-..+..+..     .++.+=....++.|.+.|+.-|..+|..|+..+-+..            
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            34455444  3455566666665543     3455666677889999999999999999998886543            


Q ss_pred             ----ChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCCh-hHHHHHHccCC
Q 004632          110 ----DLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCL-DDARKVFDKMT  157 (741)
Q Consensus       110 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~  157 (741)
                          ..+-+..++++|..+|+-||-.+-..|+.++.+.+.. ....++.-.|+
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                2334788999999999999999999999999888764 44555554454

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.46  E-value=0.16  Score=32.27  Aligned_cols=32  Identities=16%  Similarity=0.093  Sum_probs=27.9

Q ss_pred             chhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632          701 NGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       701 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  732 (741)
                      +..+..++.+|.+.|++++|.+.|+++.+...
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P   32 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDP   32 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            35788999999999999999999999887543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.36  E-value=0.15  Score=30.04  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          702 GYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .++..++.+|...|++++|++.+++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            47889999999999999999999988763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.22  E-value=0.59  Score=39.30  Aligned_cols=73  Identities=14%  Similarity=-0.064  Sum_probs=49.3

Q ss_pred             HhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 004632          646 SRSGDIEGAFKMIHSM-PFPANGSIW-GALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD  718 (741)
Q Consensus       646 ~~~~~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  718 (741)
                      .+.++.+++..++..+ -..|..... ..-++.+...|++.+|..+++.+.+..|..+..--.++.++...||.+
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence            4667778888887777 234443333 223444677888888888888887777777777777777777766643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.09  E-value=2.8  Score=42.95  Aligned_cols=130  Identities=15%  Similarity=0.073  Sum_probs=69.6

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChH
Q 004632          402 VASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSL  481 (741)
Q Consensus       402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  481 (741)
                      ...++..+.+.|..+.|.++-..-           ..-.....++|+++.|.++.+++.  ++..|..|.....+.|+++
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~-----------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~  364 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDP-----------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE  364 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-H-----------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCCh-----------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence            444555555555555555543221           222344556677777766654443  4557777777777777777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 004632          482 EAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDS  559 (741)
Q Consensus       482 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  559 (741)
                      -|.+.|++...         +..++-.|.-.|+.+.-.++.+.....|-      ++....++.-.|+.++..+++.+
T Consensus       365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            77777766432         34445555556666665555555554441      33444444555666666555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.01  E-value=29  Score=42.74  Aligned_cols=282  Identities=10%  Similarity=-0.010  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHh-ccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 004632          435 VQSSLIDMYSKCGFKNLAYLLFER-IQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG  513 (741)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  513 (741)
                      .+..+...|..-+++|...-+... ...+  ..++ -+......|+++.|...|+.+.+.+ ++...+++.++......|
T Consensus      1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--sl~~-qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADP--SLYQ-QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred             HHHHHHHHHHhcCCcchhhhHHHHhhcCc--cHHH-HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence            344444577777777776666553 2222  2222 2334556788888888888887753 333667777777777777


Q ss_pred             cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHH--HHHHHhc--CCHHHHHHHHH
Q 004632          514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAM--IDCYGMH--GQLNDAASLFK  589 (741)
Q Consensus       514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~A~~~~~  589 (741)
                      .++...-..+-......+-....++.-+.+--+.++++.......   ..+..+|...  +....+.  .|.-.-.+..+
T Consensus      1498 ~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~ 1574 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIE 1574 (2382)
T ss_pred             chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHH
Confidence            777766655444332222112222333344456677776666655   2333344433  2222222  22222223333


Q ss_pred             HHHHcCCCCC-------H--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH---HHHHHHhcCChHHHHHH
Q 004632          590 QMLDSGIKPN-------E--VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC---MVDLLSRSGDIEGAFKM  657 (741)
Q Consensus       590 ~~~~~~~~p~-------~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~  657 (741)
                      .+.+.-+.|-       .  ..|..++..+.-.    +-....+..  .++.++..+.+.   ...-+.+.+..-.+.+-
T Consensus      1575 ~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ep 1648 (2382)
T KOG0890|consen 1575 NSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEP 1648 (2382)
T ss_pred             HHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhH
Confidence            3333212220       0  1233333322111    111111111  223333221110   11112222322223222


Q ss_pred             ---HHhC------C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632          658 ---IHSM------P---FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       658 ---~~~~------~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                         +++.      .   ...-..+|....+.++..|.++.|...+-++.+..+  +.++...+..+++.|+...|+.+++
T Consensus      1649 ILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1649 ILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred             HHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHH
Confidence               2222      1   123456889999999999999999999988888774  5578899999999999999999999


Q ss_pred             HHHhCC
Q 004632          726 IMEVTG  731 (741)
Q Consensus       726 ~~~~~~  731 (741)
                      +..+..
T Consensus      1727 ~~l~~~ 1732 (2382)
T KOG0890|consen 1727 EILSKN 1732 (2382)
T ss_pred             HHHHhh
Confidence            887643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.96  E-value=9  Score=36.80  Aligned_cols=19  Identities=16%  Similarity=0.072  Sum_probs=12.3

Q ss_pred             HHHHhhcCChHHHHHHHHH
Q 004632          708 SNIYAEEGNWDEFGKVRSI  726 (741)
Q Consensus       708 ~~~~~~~g~~~~A~~~~~~  726 (741)
                      +..+++.++|++|.+.|+-
T Consensus       253 ~~~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  253 GKKHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHHHhhcCHHHHHHHHHH
Confidence            3446667777777777763

It is also involved in sporulation [].

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.95  E-value=3.1  Score=40.04  Aligned_cols=78  Identities=19%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHH
Q 004632          581 LNDAASLFKQMLDSGIKPNEV--TFMNILWACSHSGS--VEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFK  656 (741)
Q Consensus       581 ~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  656 (741)
                      .+.++.+|+.+.+.|+..+..  ....++..+.....  ..++.++++.+.+.|+++....|..++-...-.+..++...
T Consensus       159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~  238 (297)
T PF13170_consen  159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVE  238 (297)
T ss_pred             HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHH
Confidence            356777888888888877543  33344433322222  45788999999999998888888877654444443324433


Q ss_pred             HH
Q 004632          657 MI  658 (741)
Q Consensus       657 ~~  658 (741)
                      -+
T Consensus       239 ~i  240 (297)
T PF13170_consen  239 EI  240 (297)
T ss_pred             HH
Confidence            33

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.92  E-value=5  Score=40.33  Aligned_cols=67  Identities=7%  Similarity=-0.007  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          664 PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN----DNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       664 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .....+|..++..++++|.++.|...+.++...++.    .+.+...-++.++..|+..+|+..++...+.
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345668888999999999999999999999886632    4567777889999999999999999988773

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.89  E-value=20  Score=40.61  Aligned_cols=52  Identities=12%  Similarity=0.181  Sum_probs=27.2

Q ss_pred             CCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 004632          245 GDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSC  307 (741)
Q Consensus       245 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  307 (741)
                      ++++.|+.-+.++.   ...|.-.+..--+.|.+.+|+.++        +|+...+..+..+|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~y  945 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAY  945 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHH
Confidence            34555555444443   223444444445566677776654        45666665555444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.86  E-value=7.6  Score=35.70  Aligned_cols=73  Identities=16%  Similarity=0.012  Sum_probs=45.0

Q ss_pred             HHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 004632          473 GFYQNGNSLEAINLFHQMYLNC--LEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA  545 (741)
Q Consensus       473 ~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  545 (741)
                      .-.+.|++++|...|+.+..+.  -+-...+...++.++.+.++++.|....++....-+.....-|...+.+++
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs  117 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS  117 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence            3446778888888888777542  122344555666677777777777777777766544444444544454444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.80  E-value=0.26  Score=46.26  Aligned_cols=97  Identities=6%  Similarity=-0.141  Sum_probs=70.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 004632          605 NILWACSHSGSVEEGKFYFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHK  681 (741)
Q Consensus       605 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g  681 (741)
                      .-..-|.++|.+++|+..|......  .| ++.++..-..+|.+.+++..|..-.+.+ . ...-...|..-+.+-...|
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            3455788999999999999887763  34 6777777778888888888777666655 1 1112334555555566778


Q ss_pred             CHHHHHHHHHHHhccCCCCchh
Q 004632          682 RIDVMKTIEKELSVTGTNDNGY  703 (741)
Q Consensus       682 ~~~~a~~~~~~~~~~~p~~~~~  703 (741)
                      ...+|.+-++.++++.|++...
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHH
Confidence            8899999999999999986543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.68  E-value=22  Score=40.41  Aligned_cols=141  Identities=14%  Similarity=0.043  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 004632          536 IDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGS  615 (741)
Q Consensus       536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  615 (741)
                      .|.-.++..-+.|-+.+|..++..-.+.--..|.+....+...+.+++|.-+|+..-+         ..-.+.+|...|+
T Consensus       910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d  980 (1265)
T KOG1920|consen  910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD  980 (1265)
T ss_pred             ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence            4444555555666666666665433322233455555555666777777666665432         1134556777788


Q ss_pred             HHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004632          616 VEEGKFYFNAMRIFGVEPDL--QHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKEL  693 (741)
Q Consensus       616 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  693 (741)
                      |.+|..+..++..   .-+.  .+-..|+.-+...++.-+|-+++.+....|..     .+..+++...+++|..+....
T Consensus       981 Wr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen  981 WREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence            8888777776532   1121  11245666677777777777777766333321     222344445555555554443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.57  E-value=5.6  Score=33.38  Aligned_cols=46  Identities=11%  Similarity=0.095  Sum_probs=26.6

Q ss_pred             eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhccc
Q 004632          163 SWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGEL  209 (741)
Q Consensus       163 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  209 (741)
                      ....++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~   54 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY   54 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence            34455666666666666666666666554 24455555555555543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.52  E-value=8.4  Score=35.32  Aligned_cols=219  Identities=16%  Similarity=0.183  Sum_probs=110.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHH---CC--CCCCHHHHHHHHHHHhccccHHhHHHHHHHHH----Hc-CCCCCchhHH
Q 004632          469 SMICGFYQNGNSLEAINLFHQMYL---NC--LEMDEVTFLTAIQACSNIGQLEKGKWVHHKLI----SY-GVRKDIYIDT  538 (741)
Q Consensus       469 ~l~~~~~~~g~~~~A~~~~~~m~~---~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~~~~  538 (741)
                      .++..+.+.|++++.++.|.++..   ..  -.-+..+.+.++...+...+.+--.++++.-.    +. +-..--.+-.
T Consensus        70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt  149 (440)
T KOG1464|consen   70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT  149 (440)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence            344445555555555555554431   10  11233445555555555555444444443221    11 1111122333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCC--------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHH
Q 004632          539 ALTDMYAKCGDLQTAQRVFDSMSE--------R-------NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSG-IKPNEVT  602 (741)
Q Consensus       539 ~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~  602 (741)
                      -+...|...|.+.+..++++++.+        .       -...|..-|..|...++-..-..+|++...-. .-|-+..
T Consensus       150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI  229 (440)
T KOG1464|consen  150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI  229 (440)
T ss_pred             hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence            466667777777777777776652        1       12356667778888888777777888766421 2233333


Q ss_pred             HHHHHHH-----HhccCCHHHHHHHHHHHHH----cCCCCC---ccHHHHHHHHHHhcCC----hHHHHHHHHhCCCCCC
Q 004632          603 FMNILWA-----CSHSGSVEEGKFYFNAMRI----FGVEPD---LQHYACMVDLLSRSGD----IEGAFKMIHSMPFPAN  666 (741)
Q Consensus       603 ~~~ll~~-----~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~  666 (741)
                       ...++-     +.+.|+|++|..-|-++.+    .| .|.   .--|..|.+.+.+.|-    -.+|.    -.+..|.
T Consensus       230 -mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPE  303 (440)
T KOG1464|consen  230 -MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPE  303 (440)
T ss_pred             -HhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHH
Confidence             333443     3567888887654444433    33 222   2235566677776662    11111    1134455


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632          667 GSIWGALLNGCRIHKRIDVMKTIEKELS  694 (741)
Q Consensus       667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~  694 (741)
                      ......++.+|. .++..+.+.+++.-.
T Consensus       304 IlAMTnlv~aYQ-~NdI~eFE~Il~~~~  330 (440)
T KOG1464|consen  304 ILAMTNLVAAYQ-NNDIIEFERILKSNR  330 (440)
T ss_pred             HHHHHHHHHHHh-cccHHHHHHHHHhhh
Confidence            556666776654 455555555554433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.49  E-value=0.22  Score=29.27  Aligned_cols=29  Identities=3%  Similarity=-0.233  Sum_probs=14.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632          670 WGALLNGCRIHKRIDVMKTIEKELSVTGT  698 (741)
Q Consensus       670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p  698 (741)
                      |..++..+...|++++|...++++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            34444444445555555555555554444

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.45  E-value=0.24  Score=29.16  Aligned_cols=29  Identities=21%  Similarity=0.158  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          702 GYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .+|..++.+|...|++++|++.+++.++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46899999999999999999999988763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.37  E-value=11  Score=36.26  Aligned_cols=19  Identities=11%  Similarity=-0.239  Sum_probs=14.0

Q ss_pred             HHHhcCCHHHHHHHHHHHh
Q 004632          676 GCRIHKRIDVMKTIEKELS  694 (741)
Q Consensus       676 ~~~~~g~~~~a~~~~~~~~  694 (741)
                      .+.+.+++++|..+|+-++
T Consensus       255 ~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHhhcCHHHHHHHHHHHH
Confidence            4667788888888887554

It is also involved in sporulation [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.36  E-value=1.3  Score=41.50  Aligned_cols=77  Identities=10%  Similarity=0.305  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCccHHH
Q 004632          566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRI-----FGVEPDLQHYA  639 (741)
Q Consensus       566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  639 (741)
                      .++..++..+...|+.+.+...++++..  ..| +...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            4566677777777888888888888887  455 666788888888888888888887777655     56666666655


Q ss_pred             HHHHH
Q 004632          640 CMVDL  644 (741)
Q Consensus       640 ~l~~~  644 (741)
                      .+...
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            44444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.30  E-value=5.1  Score=32.32  Aligned_cols=65  Identities=8%  Similarity=0.136  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCC
Q 004632          466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVR  531 (741)
Q Consensus       466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  531 (741)
                      ..+..+......|+-++-.+++.++.+ +-.+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            345556777788888888888888765 34677888888888888889888888888888877754

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.14  E-value=0.24  Score=29.74  Aligned_cols=27  Identities=7%  Similarity=-0.123  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      ++..|+..+.+.|++++|++++++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356777778888888888888888543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=91.93  E-value=15  Score=39.95  Aligned_cols=86  Identities=15%  Similarity=0.106  Sum_probs=38.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcC-CCCCchhHHHHHHHHHh---
Q 004632          471 ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYG-VRKDIYIDTALTDMYAK---  546 (741)
Q Consensus       471 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---  546 (741)
                      ...+.-.|+++.|++.+-.  ..+...+.+.+...+..+.-.+-.+...   ..+.... -.|.+--+..++..|.+   
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            3445567888988888766  2234455555555555443222222111   2221111 11112446677777776   


Q ss_pred             cCCHHHHHHHHHhcC
Q 004632          547 CGDLQTAQRVFDSMS  561 (741)
Q Consensus       547 ~g~~~~A~~~~~~~~  561 (741)
                      ..++.+|.+++--+.
T Consensus       340 ~td~~~Al~Y~~li~  354 (613)
T PF04097_consen  340 ITDPREALQYLYLIC  354 (613)
T ss_dssp             TT-HHHHHHHHHGGG
T ss_pred             ccCHHHHHHHHHHHH
Confidence            457788888877665

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.93  E-value=8.6  Score=34.14  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=16.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          703 YYTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       703 ~~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      +|..|++-|...|+.++|..+|+-..
T Consensus       239 tyFYL~K~~l~~G~~~~A~~LfKLai  264 (297)
T COG4785         239 TYFYLGKYYLSLGDLDEATALFKLAV  264 (297)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHH
Confidence            46666666666677776666665443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.88  E-value=1.2  Score=29.49  Aligned_cols=39  Identities=10%  Similarity=-0.069  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL  707 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  707 (741)
                      .+..+.-++.+.|++++|....+.+++..|+|..+....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            345567778999999999999999999999988665443

>PRK09687 putative lyase; Provisional

Probab=91.70  E-value=13  Score=35.67  Aligned_cols=72  Identities=11%  Similarity=0.042  Sum_probs=33.9

Q ss_pred             cchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004632          332 YDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSA  408 (741)
Q Consensus       332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  408 (741)
                      +..+....+.++.+.|+....-.+.+.+..++  .....+.++...|.. +|+..+..+.+.  .||...-...+.+
T Consensus       205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a  276 (280)
T PRK09687        205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK  276 (280)
T ss_pred             ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence            34444445555555554322222223333323  233455666666664 566666666653  3355544444333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.66  E-value=0.31  Score=28.29  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=14.2

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          704 YTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       704 ~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +..++.+|.+.|++++|.++|+++.+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34455555555555555555555544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.45  E-value=0.064  Score=45.48  Aligned_cols=84  Identities=8%  Similarity=0.091  Sum_probs=59.3

Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHH
Q 004632          101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEG  180 (741)
Q Consensus       101 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  180 (741)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++....   .....++..+.+.|-++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            5677777788888888888888777667788888888888888888888888774332   3334556666666777777


Q ss_pred             HHHHHHh
Q 004632          181 LKMFHSM  187 (741)
Q Consensus       181 ~~~~~~m  187 (741)
                      .-++.++
T Consensus        90 ~~Ly~~~   96 (143)
T PF00637_consen   90 VYLYSKL   96 (143)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHc
Confidence            6666654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK09687 putative lyase; Provisional

Probab=91.15  E-value=15  Score=35.29  Aligned_cols=25  Identities=4%  Similarity=-0.056  Sum_probs=10.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632          673 LLNGCRIHKRIDVMKTIEKELSVTGT  698 (741)
Q Consensus       673 l~~~~~~~g~~~~a~~~~~~~~~~~p  698 (741)
                      .+.++...|+. +|...+.++.+.+|
T Consensus       241 a~~ALg~ig~~-~a~p~L~~l~~~~~  265 (280)
T PRK09687        241 IIEAAGELGDK-TLLPVLDTLLYKFD  265 (280)
T ss_pred             HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence            33334444442 34444444444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.97  E-value=2.8  Score=36.81  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHH--HH
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV--TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYA--CM  641 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--~l  641 (741)
                      .+..+...|++.|+.+.|.+.|.++.+....|...  .+..++......+++..+.....++...--.+. ...-+  ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            56667778888888888888888888765555433  566677777777888888888777766211111 11111  11


Q ss_pred             --HHHHHhcCChHHHHHHHHhC
Q 004632          642 --VDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       642 --~~~~~~~~~~~~A~~~~~~~  661 (741)
                        +-.+...+++.+|-+.|-..
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHcc
Confidence              11233566777777777666

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.80  E-value=0.54  Score=27.56  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=25.6

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          702 GYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .+|..++.+|...|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4688999999999999999999998876

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.74  E-value=11  Score=33.05  Aligned_cols=86  Identities=9%  Similarity=0.006  Sum_probs=57.8

Q ss_pred             hhccCChHHHHHHHHHHHHhcCCcch---hHHHHHHHHHhcCCHHHHHHHHHhccCCCc--hHHHHHHHHHHhcCChHHH
Q 004632          409 CGNVGSLQLGLQIHGHVIKIDCKDEF---VQSSLIDMYSKCGFKNLAYLLFERIQQKSV--VMWNSMICGFYQNGNSLEA  483 (741)
Q Consensus       409 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A  483 (741)
                      +...++++.|...++..+....+...   +-..+.++....|.+++|...++....++-  .....-.+.+...|+-++|
T Consensus        99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A  178 (207)
T COG2976          99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA  178 (207)
T ss_pred             HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence            55667777777777766654444332   445677777788888888888877766532  2234445677778888888


Q ss_pred             HHHHHHHHHCC
Q 004632          484 INLFHQMYLNC  494 (741)
Q Consensus       484 ~~~~~~m~~~~  494 (741)
                      ..-|++....+
T Consensus       179 r~ay~kAl~~~  189 (207)
T COG2976         179 RAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHcc
Confidence            88888777664

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.53  E-value=28  Score=37.44  Aligned_cols=146  Identities=13%  Similarity=0.094  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHH---Hh----cCCh
Q 004632          579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLL---SR----SGDI  651 (741)
Q Consensus       579 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~  651 (741)
                      .+.+.|..++++..+.| .|...--...+..+.. ++++.+.-.+..+...|..-....-..+....   ..    ..+.
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~  455 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL  455 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence            35666666666666665 3322222222223333 55555555555554433221111111111111   00    1245


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc-C--ChHHHHHHH
Q 004632          652 EGAFKMIHSMPFPANGSIWGALLNGCRIH----KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE-G--NWDEFGKVR  724 (741)
Q Consensus       652 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~  724 (741)
                      +.+...+.+....-+......+...+...    .+++.|...+.++....   +.....|++.+..- |  ....|.+++
T Consensus       456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~  532 (552)
T KOG1550|consen  456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY  532 (552)
T ss_pred             hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence            56666666665455566666666655433    36788888888877766   66677777777652 2  256788888


Q ss_pred             HHHHh
Q 004632          725 SIMEV  729 (741)
Q Consensus       725 ~~~~~  729 (741)
                      .+..+
T Consensus       533 ~~~~~  537 (552)
T KOG1550|consen  533 DQASE  537 (552)
T ss_pred             HHHHh
Confidence            87766

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=90.50  E-value=0.61  Score=39.88  Aligned_cols=33  Identities=18%  Similarity=0.086  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632          683 IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG  715 (741)
Q Consensus       683 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  715 (741)
                      +++|..-+++++.++|+...++..++.+|...+
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            455666666667777777777777777766544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.50  E-value=0.39  Score=27.86  Aligned_cols=32  Identities=9%  Similarity=-0.175  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004632          669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTND  700 (741)
Q Consensus       669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~  700 (741)
                      ++..++.++.+.|++++|...++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            45667888899999999999999999999974

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.42  E-value=0.4  Score=26.13  Aligned_cols=24  Identities=17%  Similarity=0.123  Sum_probs=18.6

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHH
Q 004632          702 GYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       702 ~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                      .....|+.++...|+.++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356678888888888888887765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.30  E-value=0.45  Score=28.05  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=23.1

Q ss_pred             HHHHHHhcCCcchhHHHHHHHHHhcCCHHHHH
Q 004632          422 HGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAY  453 (741)
Q Consensus       422 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  453 (741)
                      ++++++..|.+..++..+...|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45666777777777777777777777777764

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.35  E-value=0.72  Score=29.04  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632          705 TLLSNIYAEEGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       705 ~~l~~~~~~~g~~~~A~~~~~~~~~~~  731 (741)
                      ..|+.+|...|+.+.|.++++++...|
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            468899999999999999999888654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=89.20  E-value=38  Score=36.99  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004632          435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMY  491 (741)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  491 (741)
                      +....+.-+...|++++|..+|.-                  .|+++.+++++....
T Consensus       416 i~~~~A~~~e~~g~~~dAi~Ly~L------------------a~~~d~vl~lln~~L  454 (613)
T PF04097_consen  416 IIEQAAREAEERGRFEDAILLYHL------------------AEEYDKVLSLLNRLL  454 (613)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH------------------TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH------------------HhhHHHHHHHHHHHH
Confidence            444555666677888777776654                  356666666666544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=88.85  E-value=1.4  Score=41.60  Aligned_cols=94  Identities=15%  Similarity=0.145  Sum_probs=67.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 004632          572 IDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD  650 (741)
Q Consensus       572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  650 (741)
                      ..-|.+.|.+++|+..|.+...  +.| |.+++..-..+|.+..++..|..-...++..+ ..-...|..-+.+-...|+
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence            4579999999999999999988  788 88889888999999999999998888877632 1112233333333344456


Q ss_pred             hHHHHHHHHhC-CCCCCHH
Q 004632          651 IEGAFKMIHSM-PFPANGS  668 (741)
Q Consensus       651 ~~~A~~~~~~~-~~~~~~~  668 (741)
                      ..+|.+-++.. ...|+..
T Consensus       181 ~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             HHHHHHhHHHHHhhCcccH
Confidence            66666666655 4566543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.82  E-value=14  Score=31.72  Aligned_cols=39  Identities=3%  Similarity=-0.014  Sum_probs=23.5

Q ss_pred             HHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHcc
Q 004632          117 VHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDK  155 (741)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  155 (741)
                      ....+.+.+++|+...+..++..+.+.|.+.....++.-
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~   54 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY   54 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence            344445556666666666666666666666665555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.80  E-value=0.82  Score=28.35  Aligned_cols=28  Identities=18%  Similarity=0.195  Sum_probs=22.8

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          702 GYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .++..|+.+|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3578889999999999999999988766

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.80  E-value=5.3  Score=35.10  Aligned_cols=94  Identities=10%  Similarity=0.052  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHHH--HH
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSMP----FPANGSIWG--AL  673 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~--~l  673 (741)
                      .+..+...|.+.|+.+.|.+.|.++.+....+.  ...+-.+++...-.+++..+...+.++.    ...+....+  ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            677888899999999999999999988544443  5567778888888999999988888872    111222221  22


Q ss_pred             HH--HHHhcCCHHHHHHHHHHHhc
Q 004632          674 LN--GCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       674 ~~--~~~~~g~~~~a~~~~~~~~~  695 (741)
                      ..  .+...+++..|-+.|-.+..
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccCc
Confidence            22  24567888888877766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.77  E-value=4.6  Score=34.15  Aligned_cols=113  Identities=14%  Similarity=0.171  Sum_probs=68.9

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 004632          606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDL-QHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRI  683 (741)
Q Consensus       606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~  683 (741)
                      ++..-...++.+++..++.-+.-  +.|.. ..-..-+..+.+.|+|.+|..+|+++ ...|....-..|+..|.....-
T Consensus        16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            33445677899999999999977  33442 22223455678999999999999999 4456556666666666544433


Q ss_pred             HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632          684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK  722 (741)
Q Consensus       684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  722 (741)
                      ..=...-+++++..++ +. -..|...+....+...|..
T Consensus        94 ~~Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   94 PSWRRYADEVLESGAD-PD-ARALVRALLARADLEPAHE  130 (160)
T ss_pred             hHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchhh
Confidence            3333344445554442 32 2344455555555555544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=88.44  E-value=44  Score=36.85  Aligned_cols=216  Identities=13%  Similarity=-0.009  Sum_probs=115.2

Q ss_pred             HHhccccHHhHHHHHHHHHHcCCCCCch-------hHHHHH-HHHHhcCCHHHHHHHHHhcCC--------CCHHHHHHH
Q 004632          508 ACSNIGQLEKGKWVHHKLISYGVRKDIY-------IDTALT-DMYAKCGDLQTAQRVFDSMSE--------RNVVSWSAM  571 (741)
Q Consensus       508 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l  571 (741)
                      ......++++|..+..++...-..|+..       .++.+- ......|+++.|.++.+....        +....+..+
T Consensus       424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            3455677788887777775433332221       122221 123346888888887776542        456677778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHH--HHhccCC--HHHHHHHHHHHHHc-CCCC-----CccHH
Q 004632          572 IDCYGMHGQLNDAASLFKQMLDSGIKPNEV---TFMNILW--ACSHSGS--VEEGKFYFNAMRIF-GVEP-----DLQHY  638 (741)
Q Consensus       572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~ll~--~~~~~~~--~~~a~~~~~~~~~~-~~~~-----~~~~~  638 (741)
                      ..+..-.|++++|..+.....+.--.-+..   .+..+..  .+..+|.  +.+....+...... ....     -..++
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r  583 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR  583 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence            888888899999998887766531122222   2333322  4566673  33344444444431 1111     12334


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhccCCCC-c-hh---H
Q 004632          639 ACMVDLLSRSGDIEGAFKMIHSM-------PFPANGSIW--GALLNGCRIHKRIDVMKTIEKELSVTGTND-N-GY---Y  704 (741)
Q Consensus       639 ~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~-~~---~  704 (741)
                      ..+..++.+   .+.+..-....       ...|-....  ..++......|+.++|...+.++..+.-++ + ..   .
T Consensus       584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~  660 (894)
T COG2909         584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA  660 (894)
T ss_pred             HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            444444444   33332222221       111222222  356677788999999999988887654332 1 11   1


Q ss_pred             HHHHHH-Hh-hcCChHHHHHHHHH
Q 004632          705 TLLSNI-YA-EEGNWDEFGKVRSI  726 (741)
Q Consensus       705 ~~l~~~-~~-~~g~~~~A~~~~~~  726 (741)
                      ...+.+ |+ ..||.++|...+.+
T Consensus       661 ~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         661 AYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHhhHHHhcccCCHHHHHHHHHh
Confidence            112222 22 46888888877665

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.21  E-value=6.1  Score=37.20  Aligned_cols=99  Identities=12%  Similarity=0.206  Sum_probs=72.9

Q ss_pred             HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004632          527 SYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE-RN--------VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK  597 (741)
Q Consensus       527 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  597 (741)
                      ..|......+...++.......+++.+...+-++.. |+        ..+|..++    -.-++++++.++..=++-|+.
T Consensus        57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF  132 (418)
T KOG4570|consen   57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIF  132 (418)
T ss_pred             hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccc
Confidence            345555666666677666677888888888877763 22        22332222    233778888888888888999


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632          598 PNEVTFMNILWACSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       598 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  629 (741)
                      ||..+++.+++.+.+.+++.+|.++...|...
T Consensus       133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            99999999999999999999998888877763

>PRK12798 chemotaxis protein; Reviewed

Probab=88.18  E-value=30  Score=34.58  Aligned_cols=180  Identities=11%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             cCCHHHHHHHHHhcCC----CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHH
Q 004632          547 CGDLQTAQRVFDSMSE----RNVVSWSAMIDCY-GMHGQLNDAASLFKQMLDSGIKPNE----VTFMNILWACSHSGSVE  617 (741)
Q Consensus       547 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~  617 (741)
                      .|+.+++.+.+..+..    +....|-.|+.+- ....++..|+++|+...-  ..|-.    .....-+......|+.+
T Consensus       125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~  202 (421)
T PRK12798        125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD  202 (421)
T ss_pred             cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence            6888888888888773    4455677776653 456689999999998887  56643    24455555667888888


Q ss_pred             HHHHHHHHHHH-cCCCCCccHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004632          618 EGKFYFNAMRI-FGVEPDLQHYA-CMVDLLSRSG---DIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKE  692 (741)
Q Consensus       618 ~a~~~~~~~~~-~~~~~~~~~~~-~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  692 (741)
                      ++..+-..-.. ....|-...|. .+...+.+.+   ..+.-..++..|..+-....|..+.+.....|+.+.|...-++
T Consensus       203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~  282 (421)
T PRK12798        203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER  282 (421)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            87665554443 22233322222 2333343333   3445556666664344466788888888899999999999999


Q ss_pred             HhccCCCCchhHHHHHH-----HHhhcCChHHHHHHHHHHHh
Q 004632          693 LSVTGTNDNGYYTLLSN-----IYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       693 ~~~~~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +..+..... .-...+.     +-.-..++++|.+.+..+-.
T Consensus       283 A~~L~~~~~-~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~  323 (421)
T PRK12798        283 ALKLADPDS-ADAARARLYRGAALVASDDAESALEELSQIDR  323 (421)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence            988764322 2222222     23345677788777776544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.98  E-value=3.4  Score=37.54  Aligned_cols=66  Identities=14%  Similarity=-0.005  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH-------hccC--CC----CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632          667 GSIWGALLNGCRIHKRIDVMKTIEKEL-------SVTG--TN----DNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  732 (741)
                      ...+..+.+.++..|+.+.....++++       .+..  |.    ...+...+|.++.+.|++++|...|.++...+-
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            335566677777777755444444444       4322  22    235678889999999999999999999888543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.83  E-value=8.4  Score=38.50  Aligned_cols=142  Identities=15%  Similarity=0.146  Sum_probs=89.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 004632          572 IDCYGMHGQLNDAASLFKQML-DSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD  650 (741)
Q Consensus       572 ~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  650 (741)
                      |.--...|+.-.|.+-+.... ...-.|+.....  .......|+++.+...+...... +.....+...+++...+.|+
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence            333445677777665444444 433344443332  23456778999998888777651 22345667778888888899


Q ss_pred             hHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHHHHH-HhhcCC
Q 004632          651 IEGAFKMIHSM-PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN-DNGYYTLLSNI-YAEEGN  716 (741)
Q Consensus       651 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~-~~~~g~  716 (741)
                      +++|...-+-| +. -.++.............|-++++...+++...++|+ ++...+.|... |+..|+
T Consensus       373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~  442 (831)
T PRK15180        373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN  442 (831)
T ss_pred             HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence            99999888877 32 234444444444566778889999999999988876 44444444332 444443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.74  E-value=2.7  Score=37.89  Aligned_cols=100  Identities=8%  Similarity=-0.051  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHH------cCCCCCc-----------cHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 004632          602 TFMNILWACSHSGSVEEGKFYFNAMRI------FGVEPDL-----------QHYACMVDLLSRSGDIEGAFKMIHSM--P  662 (741)
Q Consensus       602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~--~  662 (741)
                      +...-.+-+.+.|++.+|..-|++++.      ..-+|..           ..+..+.+++...|++-++++.-.++  .
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            333444456677778887777776643      0111211           12222333444444444444444444  2


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      .+.+...|..-..+....-+.++|..-+.++++++|.-.
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            233444444444444444455555555555555555433

>PRK11619 lytic murein transglycosylase; Provisional

Probab=87.69  E-value=47  Score=36.34  Aligned_cols=50  Identities=8%  Similarity=-0.187  Sum_probs=28.7

Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004632          643 DLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKE  692 (741)
Q Consensus       643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  692 (741)
                      ..+...|...+|...+..+....+......+.....+.|.++.+.....+
T Consensus       415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~  464 (644)
T PRK11619        415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIA  464 (644)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence            34455667777766666552224444555555555666776666665543

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=87.49  E-value=6.5  Score=29.87  Aligned_cols=86  Identities=14%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             ChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 004632          110 DLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVR  189 (741)
Q Consensus       110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  189 (741)
                      ..++|.-+-+-+...+-. ...+-...++.+...|++++|..+.+...-||...|-++-.  .+.|-.+....-+..|..
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~   96 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA   96 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence            345566666555554422 33344445667889999999999999998899999888766  467777777777777777


Q ss_pred             CCCCCChhhH
Q 004632          190 EGVEPDFVTM  199 (741)
Q Consensus       190 ~~~~~~~~~~  199 (741)
                      +| .|...+|
T Consensus        97 sg-~p~lq~F  105 (115)
T TIGR02508        97 SG-DPRLQTF  105 (115)
T ss_pred             CC-CHHHHHH
Confidence            66 4444444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.17  E-value=33  Score=36.89  Aligned_cols=112  Identities=16%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHH
Q 004632          615 SVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS---GDIEGAFKMIHSMPFPANGSIWGALLNGCR----IHKRIDVMK  687 (741)
Q Consensus       615 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~  687 (741)
                      +.+.|..++...-+.|. |+...  .++.++...   .+...|.++|..+...-....+..+...+.    ...+.+.|.
T Consensus       308 d~~~A~~~~~~aA~~g~-~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~  384 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGN-PDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF  384 (552)
T ss_pred             cHHHHHHHHHHHHhcCC-chHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence            45556666666655542 22222  233333322   244566666666622222333333332222    223566667


Q ss_pred             HHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhCC
Q 004632          688 TIEKELSVTGTNDNGYYTLLSNIYAEE-GNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~  731 (741)
                      .+++++.+.++  +.+...++..+... ++++.+.-.+..+...|
T Consensus       385 ~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  385 AYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence            77776666663  22233333222221 56666665555555444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=87.13  E-value=1.9  Score=38.74  Aligned_cols=83  Identities=11%  Similarity=-0.087  Sum_probs=52.3

Q ss_pred             hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 004632          647 RSGDIEGAFKMIHSM-PFPANG-SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVR  724 (741)
Q Consensus       647 ~~~~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  724 (741)
                      ...+++.|+..+.+. ...|.. ..|..-+-.+.+..+++.+..--.+++++.|+.....+.|+........+++|+..+
T Consensus        22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            344556666665555 444444 344444555566667777777777777777777777777777777777777777777


Q ss_pred             HHHHh
Q 004632          725 SIMEV  729 (741)
Q Consensus       725 ~~~~~  729 (741)
                      ++..+
T Consensus       102 qra~s  106 (284)
T KOG4642|consen  102 QRAYS  106 (284)
T ss_pred             HHHHH
Confidence            76644

>PRK10941 hypothetical protein; Provisional

Probab=86.99  E-value=3.7  Score=38.73  Aligned_cols=61  Identities=13%  Similarity=-0.075  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632          670 WGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      .+++-.++.+.++++.|..+.+.++.+.|+++.-+...|-+|.+.|.+..|..-++.-.+.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            4555566788888888888888888888888888888888888888888888887776553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.78  E-value=0.48  Score=44.81  Aligned_cols=115  Identities=9%  Similarity=0.038  Sum_probs=55.9

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004632          612 HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPAN-GSIWGALLNGCRIHKRIDVMKTI  689 (741)
Q Consensus       612 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~  689 (741)
                      ..|.++.|++.|...+..+ ++....|..-..++.+.++...|++-+... ..+|| ..-|-.-..+-+..|++++|.+.
T Consensus       126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            4456666666666665533 233444555555555666666666555554 33332 22333334444555666666666


Q ss_pred             HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      +..+.+++-+.. .-..|-.+.-+.+..++-...+++.+
T Consensus       205 l~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~~  242 (377)
T KOG1308|consen  205 LALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERAR  242 (377)
T ss_pred             HHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHHH
Confidence            666655543311 22223333334444444444444333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.67  E-value=2.5  Score=37.40  Aligned_cols=71  Identities=10%  Similarity=0.032  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHH
Q 004632          638 YACMVDLLSRSGDIEGAFKMIHSM-PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG---YYTLLS  708 (741)
Q Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~  708 (741)
                      .+..+..+.+.+...+|+...+.- +. |.+......++..++-.|++++|..-++-+-++.|++..   .|..++
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li   79 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI   79 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            444556677888999999888766 43 446667778888899999999999999999999888553   344444

>smart00028 TPR Tetratricopeptide repeats

Probab=86.19  E-value=1.5  Score=24.69  Aligned_cols=25  Identities=24%  Similarity=0.200  Sum_probs=12.8

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHH
Q 004632          704 YTLLSNIYAEEGNWDEFGKVRSIME  728 (741)
Q Consensus       704 ~~~l~~~~~~~g~~~~A~~~~~~~~  728 (741)
                      +..++.+|...|++++|...+++..
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~   28 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKAL   28 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4445555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.14  E-value=8.8  Score=39.71  Aligned_cols=97  Identities=13%  Similarity=0.051  Sum_probs=47.1

Q ss_pred             hcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 004632          345 ECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGH  424 (741)
Q Consensus       345 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  424 (741)
                      +.|+++.|.++..+..  +..-|..|.++..+.+++..|.+.|.+..+         |..++-.+...|+-+....+-..
T Consensus       649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~  717 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL  717 (794)
T ss_pred             hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence            3344444444433322  344577777777777777777777766554         23344444444554443333333


Q ss_pred             HHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 004632          425 VIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFE  457 (741)
Q Consensus       425 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  457 (741)
                      ..+.|..     +....+|...|+++++.+++.
T Consensus       718 ~~~~g~~-----N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  718 AKKQGKN-----NLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHhhccc-----chHHHHHHHcCCHHHHHHHHH
Confidence            3333322     222333444455555544443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.06  E-value=18  Score=36.09  Aligned_cols=59  Identities=10%  Similarity=-0.086  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHHHHHHh-hcCChHHHHHHHHHHHh
Q 004632          671 GALLNGCRIHKRIDVMKTIEKELSVTGTN-DNGYYTLLSNIYA-EEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~  729 (741)
                      ...+..+.+.|-+..|.++.+-+..++|. ||-.....++.|+ +++.++--+++.+....
T Consensus       107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            34455678899999999999999999998 8766666666555 67888878888887654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.03  E-value=7.5  Score=34.55  Aligned_cols=126  Identities=12%  Similarity=0.028  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCCccHHHHHHHH
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIF--GVEPDLQHYACMVDL  644 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~  644 (741)
                      .+..++.+.+.+...+++...+.-++  -+|. ..+-..++..++-.|+|++|..-++-.-..  ...+...+|..++++
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            44556677778888999988888777  4564 446677788889999999998888877662  223335566666654


Q ss_pred             HHhcCChHHHHHHHHhC--C---CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCc
Q 004632          645 LSRSGDIEGAFKMIHSM--P---FPANGSIWGALLNG--CRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       645 ~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~  701 (741)
                      -.-.      -++|..-  +   ..|.+.=...+..+  +...|.-+.+..+-+++.+..|..+
T Consensus        82 ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i  139 (273)
T COG4455          82 EAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI  139 (273)
T ss_pred             HHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence            2211      1223222  1   11222222333333  3334455666677777777766543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=85.95  E-value=2.4  Score=32.09  Aligned_cols=65  Identities=17%  Similarity=0.067  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChH-HHHHHHHHH
Q 004632          663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN--DNGYYTLLSNIYAEEGNWD-EFGKVRSIM  727 (741)
Q Consensus       663 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~~  727 (741)
                      .|.|......+...+...|++++|++.+-.+.+.+|.  +...-..+..++.-.|.-+ -+.++..+|
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            4567788888888888999999999998888888765  4667778888888888744 555555544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.94  E-value=3  Score=38.69  Aligned_cols=60  Identities=8%  Similarity=-0.130  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          670 WGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      +......|.++|.+.+|.++-++++.++|-+...+..|..+|...||-=+|.+.|+++.+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            444566788999999999999999999999999999999999999999899888888755

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.84  E-value=1.1  Score=37.95  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=52.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcC
Q 004632           65 VLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFG  144 (741)
Q Consensus        65 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  144 (741)
                      .+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++       ..+..-...++..+.+.|
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG   84 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence            3566666677777777777777766555556667777777777776666666655       112233344555566666


Q ss_pred             ChhHHHHHHccCC
Q 004632          145 CLDDARKVFDKMT  157 (741)
Q Consensus       145 ~~~~a~~~~~~~~  157 (741)
                      .++++.-++.++.
T Consensus        85 l~~~a~~Ly~~~~   97 (143)
T PF00637_consen   85 LYEEAVYLYSKLG   97 (143)
T ss_dssp             SHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHHcc
Confidence            6666666655543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.73  E-value=58  Score=35.36  Aligned_cols=30  Identities=13%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhcCCCCH
Q 004632          536 IDTALTDMYAKCGDLQTAQRVFDSMSERNV  565 (741)
Q Consensus       536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  565 (741)
                      ....|+..|...+++.+|...+-.+.++++
T Consensus       507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v  536 (846)
T KOG2066|consen  507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV  536 (846)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence            344588888888999999988888876544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=85.65  E-value=36  Score=32.99  Aligned_cols=116  Identities=9%  Similarity=-0.069  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 004632          615 SVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG-------DIEGAFKMIHSMPFPANGSIWGALLNGCRI----HKRI  683 (741)
Q Consensus       615 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~  683 (741)
                      +..+|..+++++-+.|..+.......+...|....       +...|...+.++...-+......+...+..    ..+.
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~  207 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL  207 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence            55556666665555543322122233333333321       123566666665222344444444443322    2367


Q ss_pred             HHHHHHHHHHhccCCCCchhHHHHHHHHhhcC---------------ChHHHHHHHHHHHhCCCc
Q 004632          684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG---------------NWDEFGKVRSIMEVTGLK  733 (741)
Q Consensus       684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~  733 (741)
                      ++|...|+++.+.+.  ......++ .+...|               +...|...+......|..
T Consensus       208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            777777777777666  44555555 555444               666777777766665543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.11  E-value=21  Score=29.80  Aligned_cols=52  Identities=8%  Similarity=-0.013  Sum_probs=28.8

Q ss_pred             cCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 004632          310 LGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERN  363 (741)
Q Consensus       310 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  363 (741)
                      .++.+++..++..+.-..  |....+-..-...+...|++++|..+|+++.+..
T Consensus        23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            344444444444443322  5555555555556666677777777777666543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.65  E-value=9.1  Score=33.84  Aligned_cols=72  Identities=8%  Similarity=0.009  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHH
Q 004632          650 DIEGAFKMIHSMPFPA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN----DNGYYTLLSNIYAEEGNWDEFG  721 (741)
Q Consensus       650 ~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~  721 (741)
                      .-++|.+.|-.+...|  +...+...+..+....|.+++..++-+++++.+.    |+.++..|+.+|.+.|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4466777766662222  2333333444455578889999999888876544    5788999999999999998874

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=84.64  E-value=12  Score=33.97  Aligned_cols=116  Identities=9%  Similarity=-0.012  Sum_probs=71.7

Q ss_pred             HHhcCCHHHHHHHHHhcC--CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHH
Q 004632          544 YAKCGDLQTAQRVFDSMS--ERNVVS-WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFM-NILWACSHSGSVEEG  619 (741)
Q Consensus       544 ~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a  619 (741)
                      |....+++.|..-+.+..  .|++.+ |+.-+-++.+.++++.+..=-.+.++  +.||..--. .+..+......+++|
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea   97 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA   97 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence            555667777777776655  466643 45567777788888888887777777  788876433 344466777888888


Q ss_pred             HHHHHHHHH----cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632          620 KFYFNAMRI----FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       620 ~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      +..+++..+    ..+++...+...|..+--..=...+..++.++.
T Consensus        98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~  143 (284)
T KOG4642|consen   98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL  143 (284)
T ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence            888888754    333333444444444322222333444444444

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=84.48  E-value=5.1  Score=32.46  Aligned_cols=72  Identities=15%  Similarity=0.019  Sum_probs=44.7

Q ss_pred             CCCccHHHHHHHHHHhcCCh---HHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 004632          632 EPDLQHYACMVDLLSRSGDI---EGAFKMIHSM-P-FPA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY  703 (741)
Q Consensus       632 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  703 (741)
                      .++..+--.+..++.+..+.   .+.+.++++. + .+|  ......-|.-++.+.++++.+..+.+..++..|+|..+
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            45555555667777766544   3456666665 2 233  23344445556777788888888888887777777654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.44  E-value=34  Score=31.62  Aligned_cols=180  Identities=13%  Similarity=0.117  Sum_probs=115.2

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHhHHHHHHHHHH---cCC--CCCchhHHHHHHHHHhc
Q 004632          476 QNGNSLEAINLFHQMYLNCLEMDEV---TFLTAIQACSNIGQLEKGKWVHHKLIS---YGV--RKDIYIDTALTDMYAKC  547 (741)
Q Consensus       476 ~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~  547 (741)
                      +...+++|+.-|++..+..-.-...   ....++....+.+++++....+.++..   ..+  .-+....+.+++..+.+
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            3458899999999988753333333   444567788899999999888887742   222  22455677788877777


Q ss_pred             CCHHHHHHHHHhcCC-----CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHH
Q 004632          548 GDLQTAQRVFDSMSE-----RNV----VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP----N-------EVTFMNIL  607 (741)
Q Consensus       548 g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~-------~~~~~~ll  607 (741)
                      .+.+--..+++.-.+     .|.    .|-..|...|...+.+..-.++++++...--..    |       ...|..-+
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            777666666554331     222    234556777788888888888888887641111    1       23566667


Q ss_pred             HHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHH----HHHHhcCChHHHH
Q 004632          608 WACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMV----DLLSRSGDIEGAF  655 (741)
Q Consensus       608 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~----~~~~~~~~~~~A~  655 (741)
                      ..|..+++-.....++++.+. ....|.+.+...+-    ....+.|++++|-
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah  251 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH  251 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence            778888888888888888776 33345554444332    2345667777763

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.29  E-value=13  Score=32.96  Aligned_cols=73  Identities=8%  Similarity=-0.021  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCccHHHHHHHHHHhcCChHHHH
Q 004632          582 NDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI---FGVEPDLQHYACMVDLLSRSGDIEGAF  655 (741)
Q Consensus       582 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~  655 (741)
                      +.|.+.|-.+...+.--+......|. .|....+.++++.++-++.+   .+-.+++..+..|+..+.+.|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            45666666666654333333333333 33345677777777777776   222566777777777777777777663

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.18  E-value=3.7  Score=35.30  Aligned_cols=43  Identities=12%  Similarity=0.083  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632          683 IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       683 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  732 (741)
                      +++|...|+++...+|.|..+...|--+       .+|-++..++.+.++
T Consensus        96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~  138 (186)
T PF06552_consen   96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL  138 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence            6778888888899999988766665422       245566666655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.85  E-value=3.8  Score=38.44  Aligned_cols=102  Identities=10%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             hCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC-CCc-----cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 004632           23 TGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE-PDS-----FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNF   96 (741)
Q Consensus        23 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~   96 (741)
                      .|...+..+...++..-....+++++...+-+++. |+.     .+-...++.| -.-+++.++.++..=+..|+-||..
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence            35555666666777776777778888777666553 321     1112223322 2346677777777777778888888


Q ss_pred             cHHHHHHHhhcCCChhhHHHHHHHHHHhC
Q 004632           97 IYPSVLRACSSLGDLGSGEKVHGRIIKCG  125 (741)
Q Consensus        97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  125 (741)
                      ++..++..+.+.+++..|.++.-.|....
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            88888888888888888777777666554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=83.22  E-value=8.4  Score=29.12  Aligned_cols=46  Identities=22%  Similarity=0.379  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 004632          382 EALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIK  427 (741)
Q Consensus       382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  427 (741)
                      ++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+..
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4556667777778899999999999999999999999999987663

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=82.71  E-value=61  Score=33.26  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 004632          466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA  545 (741)
Q Consensus       466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  545 (741)
                      ..-+++..+..+-.+.-...+..+|..-|  -+-..|..++.+|... ..++-..+|+++.+..+. |+..-..|...|.
T Consensus        68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE  143 (711)
T COG1747          68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE  143 (711)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence            34445555555555555566666665532  3445555666666555 445555666666665543 3444444555554


Q ss_pred             hcCCHHHHHHHHHhcCC---C---CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCC
Q 004632          546 KCGDLQTAQRVFDSMSE---R---NV---VSWSAMIDCYGMHGQLNDAASLFKQMLDS-GIKPNEVTFMNILWACSHSGS  615 (741)
Q Consensus       546 ~~g~~~~A~~~~~~~~~---~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~  615 (741)
                      + ++...+..+|.++..   |   +.   ..|..+...  -..+.+..+.+..+.... |..--...+..+-.-|....+
T Consensus       144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN  220 (711)
T COG1747         144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN  220 (711)
T ss_pred             H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence            4 666666666655431   0   00   123322221  122344444444444332 212222334444445555566


Q ss_pred             HHHHHHHHHHHHH
Q 004632          616 VEEGKFYFNAMRI  628 (741)
Q Consensus       616 ~~~a~~~~~~~~~  628 (741)
                      +++|++++..+.+
T Consensus       221 ~~eai~Ilk~il~  233 (711)
T COG1747         221 WTEAIRILKHILE  233 (711)
T ss_pred             HHHHHHHHHHHhh
Confidence            6666666666555

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.49  E-value=3  Score=30.09  Aligned_cols=49  Identities=10%  Similarity=-0.060  Sum_probs=37.9

Q ss_pred             HHhcCCHHHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCChHHHHHHHH
Q 004632          677 CRIHKRIDVMKTIEKELSVTGTNDNGY---YTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       677 ~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                      +....+.++|+..++++++..++.+.-   +-.|+.+|...|++++.+++--
T Consensus        16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347778899999999999888776654   5555677888999998887743

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=82.29  E-value=9.1  Score=29.30  Aligned_cols=59  Identities=17%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHH
Q 004632          382 EALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLI  440 (741)
Q Consensus       382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  440 (741)
                      +...-++.+....+.|++......+.+|.+.+++..|.++++.+..........|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            45566667777788999999999999999999999999999877654333322444443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.25  E-value=81  Score=34.34  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004632          647 RSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMK  687 (741)
Q Consensus       647 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  687 (741)
                      +.++.++|+++.++-   .|...|..|+..+.....+-.++
T Consensus       673 el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~~~l  710 (846)
T KOG2066|consen  673 ELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFIKAL  710 (846)
T ss_pred             HhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHHHHH
Confidence            445666666666554   57788888887766655544444

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=82.25  E-value=64  Score=33.15  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 004632          498 DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDC  574 (741)
Q Consensus       498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~  574 (741)
                      |.....+++..+...-.+.-+..+..+|.+.|-  +...+..++++|... ..+.-..+++++.+   .|++.-..|..-
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~  141 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK  141 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence            344444445555544444444555555544331  233344444444444 33334444443332   222222333333


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 004632          575 YGMHGQLNDAASLFKQMLD  593 (741)
Q Consensus       575 ~~~~~~~~~A~~~~~~~~~  593 (741)
                      |-+ ++.+.+..+|.++..
T Consensus       142 yEk-ik~sk~a~~f~Ka~y  159 (711)
T COG1747         142 YEK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HHH-hchhhHHHHHHHHHH
Confidence            322 444444444444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.15  E-value=5.1  Score=41.12  Aligned_cols=101  Identities=13%  Similarity=-0.056  Sum_probs=61.6

Q ss_pred             hccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004632          611 SHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKT  688 (741)
Q Consensus       611 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~  688 (741)
                      ...|+...|...+..+......-.....-.|.+.+.+.|-..+|-.++... . ..-.+.++..+++++....+.+.|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            345777777777766655322223334445666666667666676666554 1 12334455666666777777777777


Q ss_pred             HHHHHhccCCCCchhHHHHHHHH
Q 004632          689 IEKELSVTGTNDNGYYTLLSNIY  711 (741)
Q Consensus       689 ~~~~~~~~~p~~~~~~~~l~~~~  711 (741)
                      .++.+.+++|+++.+-..|..+-
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHH
Confidence            77777777777777666655443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.90  E-value=86  Score=34.39  Aligned_cols=195  Identities=9%  Similarity=0.015  Sum_probs=98.3

Q ss_pred             CCChhhhHHHHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCcc-----cHH
Q 004632           26 HYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYM-WNNFFEESILLYHKMIREQATISNF-----IYP   99 (741)
Q Consensus        26 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~   99 (741)
                      ..+...|..||..-.++  ++-+.+-+.--++....++-.+.+.|. ...+++.|...+++.+...-+++-.     .-.
T Consensus        27 ~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~  104 (608)
T PF10345_consen   27 EEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQF  104 (608)
T ss_pred             hhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            34556777777654433  111111111111123455666666665 6778888888888765433222211     112


Q ss_pred             HHHHHhhcCCChhhHHHHHHHHHHhCCC----CChhhhhHH-HHHhHhcCChhHHHHHHccCCC-------CCceeHHHH
Q 004632          100 SVLRACSSLGDLGSGEKVHGRIIKCGFD----KDDVIQTSI-LCTYGEFGCLDDARKVFDKMTS-------RDVVSWSSI  167 (741)
Q Consensus       100 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l  167 (741)
                      .+++.+.+.+... |...++..++.--.    +-...+..+ +..+...+|+..|.+.++.+..       |....+-.+
T Consensus       105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l  183 (608)
T PF10345_consen  105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL  183 (608)
T ss_pred             HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence            3445555555444 77777776654222    222333333 2233333788888887776642       122223333


Q ss_pred             HHHH--HhCCChhHHHHHHHHhHHCCC---------CCChhhHHHHHHHhc--ccCChhhHHHHHHHHH
Q 004632          168 IASY--FDNADVSEGLKMFHSMVREGV---------EPDFVTMLSLAEACG--ELCSLRPARSIHGHVL  223 (741)
Q Consensus       168 i~~~--~~~g~~~~a~~~~~~m~~~~~---------~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~  223 (741)
                      +.+.  .+.+..+++++.++.+.....         .|-..++..+++.++  ..|+++.+...+.++.
T Consensus       184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3332  345666677777766633211         233446666666655  4566666666555543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=81.84  E-value=33  Score=29.59  Aligned_cols=40  Identities=10%  Similarity=0.106  Sum_probs=24.9

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhc
Q 004632          217 SIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVK  256 (741)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  256 (741)
                      ++...+.+.+++|+...+..+++.+.+.|++.....++..
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~   54 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY   54 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence            4445555667777777777777777776666655554443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.73  E-value=3  Score=25.68  Aligned_cols=28  Identities=21%  Similarity=0.156  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632          668 SIWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  695 (741)
                      .+++.+...+...|++++|..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4677888888888888888888888775

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=81.68  E-value=17  Score=27.47  Aligned_cols=41  Identities=10%  Similarity=0.011  Sum_probs=22.6

Q ss_pred             HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632          689 IEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV  729 (741)
Q Consensus       689 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  729 (741)
                      .+++..+.+|+|......++..+...|++++|++.+-.+.+
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34445555666666666666666666666666666555544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.25  E-value=95  Score=34.48  Aligned_cols=24  Identities=4%  Similarity=-0.022  Sum_probs=16.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHH
Q 004632          605 NILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       605 ~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      .|+......|+.++|...++++..
T Consensus       623 ~LA~l~~~~Gdl~~A~~~l~~~~~  646 (894)
T COG2909         623 MLAELEFLRGDLDKALAQLDELER  646 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Confidence            455566677777777777777766

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=80.45  E-value=58  Score=31.53  Aligned_cols=135  Identities=10%  Similarity=0.035  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--cC----ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHH
Q 004632          380 SKEALELLVQMQTWGLMPDSFSVASSLSACGN--VG----SLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAY  453 (741)
Q Consensus       380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  453 (741)
                      +++.+.+++.|.+.|+.-+..+|.+.......  ..    ....+..+|+.|.+..+.-+.                   
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs-------------------  138 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS-------------------  138 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC-------------------
Confidence            34566788888998888888777554433332  12    234555666666665553222                   


Q ss_pred             HHHHhccCCCchHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcccc--HHhHHHHHHHH
Q 004632          454 LLFERIQQKSVVMWNSMICGFYQNGN----SLEAINLFHQMYLNCLEMDE--VTFLTAIQACSNIGQ--LEKGKWVHHKL  525 (741)
Q Consensus       454 ~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~  525 (741)
                              ++..++..++..  ..++    .+.+..+|+.+...|...+.  .....++..+.....  ..++.++++.+
T Consensus       139 --------~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l  208 (297)
T PF13170_consen  139 --------PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL  208 (297)
T ss_pred             --------ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence                    111222222211  1111    24456667777776655432  233333333322222  44677888888


Q ss_pred             HHcCCCCCchhHHHHHHH
Q 004632          526 ISYGVRKDIYIDTALTDM  543 (741)
Q Consensus       526 ~~~~~~~~~~~~~~l~~~  543 (741)
                      .+.|+++....|..+.-.
T Consensus       209 ~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  209 KKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHcCCccccccccHHHHH
Confidence            888888877776655433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	741
4g24_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		4e-04

>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 542 DMYAKCGDLQTAQRVFDSMSERNVVSWS---------------AMIDCYGMHGQLNDAAS 586
           DM +K GD+  A R++D  + RN V  S               A  +     G L+    
Sbjct: 34  DMCSKKGDVLEALRLYDE-ARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG-LSRGFD 91
Query: 587 LFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLS 646
           +FKQM+   + PNE TF N           E        M+ FG++P L+ Y   +    
Sbjct: 92  IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 647 RSGDIEGAFKMIHSM 661
           R GD + A+++   M
Sbjct: 152 RKGDADKAYEVDAHM 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	741
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 65.6 bits (158), Expect = 4e-11
 Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 12/228 (5%)

Query: 449 KNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFH----QMYLNCLEMDEVTFLT 504
           K +A  L +  +Q     W   +    Q      ++++      Q     L   +   L 
Sbjct: 73  KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132

Query: 505 AIQACSNIGQLEKGKWV---HHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS 561
             + C    QL     +   HH          + +  A+   +A+ G  +    V   + 
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192

Query: 562 ER----NVVSWSAMIDCYGMHGQLNDAAS-LFKQMLDSGIKPNEVTFMNILWACSHSGSV 616
           +     +++S++A + C G   Q         +QM   G+K   +    +L     +  +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252

Query: 617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFP 664
           +          +    P   + + ++  +          K+   +   
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 59.1 bits (141), Expect = 5e-09
 Identities = 28/196 (14%), Positives = 55/196 (28%), Gaps = 13/196 (6%)

Query: 538 TALTDMYAKCGDLQTAQRVFDSMSERNV----VSWSAMIDCYGMHGQLNDAASL---FKQ 590
             L         L   Q      S+  +        A   C  +  QL  A  L      
Sbjct: 96  ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155

Query: 591 MLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD 650
                       +  ++   +  G+ +E  +    ++  G+ PDL  YA  +  + R   
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215

Query: 651 IEGA----FKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT--NDNGYY 704
             G      + +              LL+       +  +  ++   S+           
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275

Query: 705 TLLSNIYAEEGNWDEF 720
            LL ++YA++G     
Sbjct: 276 KLLRDVYAKDGRVSYP 291

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 47.5 bits (111), Expect = 2e-05
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 288 MLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECG 347
             +  E P    L  +L    G   L   ++   Q  +  +  +   L  A  +      
Sbjct: 83  TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL-AFFKCCLLTD 141

Query: 348 KMSECEKVIHAIGER-------NILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSF 400
           ++     ++     +        +  +N ++  +AR+G  KE + +L  ++  GL PD  
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201

Query: 401 SVASSLSACGNVG 413
           S A++L   G   
Sbjct: 202 SYAAALQCMGRQD 214

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.2 bits (105), Expect = 9e-05
 Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 438 SLIDMYSKCGFKNLAYLLFERIQQK-------SVVMWNSMICGFYQNGNSLEAINLFHQM 490
           +            LA+ L      +       ++ M+N+++ G+ + G   E + +   +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191

Query: 491 YLNCLEMDEVTFLTAIQACSNIGQLEKGKW-VHHKLISYGVRKDIYIDTALTDMYAKCGD 549
               L  D +++  A+Q      Q          ++   G++        L     +   
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251

Query: 550 LQTAQRVFDSMSERNVV 566
           L+   +V  + S    +
Sbjct: 252 LKAVHKVKPTFSLPPQL 268

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 42.1 bits (97), Expect = 6e-04
 Identities = 10/117 (8%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 98  YPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT 157
              +L+       L   +   G+  +           +          L  A  +     
Sbjct: 95  LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154

Query: 158 SR-------DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACG 207
            +        +  +++++  +       E + +   +   G+ PD ++  +  +  G
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 42.1 bits (97), Expect = 7e-04
 Identities = 31/225 (13%), Positives = 70/225 (31%), Gaps = 19/225 (8%)

Query: 187 MVREGVEPDFVTMLSLAEACGELCSLRPARSI----HGHVLRRKIKIDGPLGNSFIVMYS 242
             +  +      +L+  + C     L  A  +    HG   +RK+ +   + N+ ++ ++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LTLDMYNAVMLGWA 176

Query: 243 KCGDLLSAERTFVKIEKRC----TTSWTAMISCYNRSGWFQKALESFV-KMLEVKEEPNL 297
           + G           ++         S+ A + C  R       +E  + +M +   +   
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236

Query: 298 ITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIH 357
           +    +L        L+    V          P        L + YA+ G++S  +  + 
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296

Query: 358 AIG---------ERNILSWNMLISEYARKGMSKEALELLVQMQTW 393
                          + S   ++S       SKE       ++T 
Sbjct: 297 LKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTL 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 9e-09
 Identities = 88/532 (16%), Positives = 163/532 (30%), Gaps = 133/532 (25%)

Query: 27  YDPPASTRLIESYAEMGSL-------RSSRLVFDTFKEPDS-----FMWAVLIKCYMW-- 72
            D     + I S  E+  +         +  +F T           F+  VL   Y +  
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 73  NNFFEESI---LLYHKMIREQATISN----FIYPSV--------LRACSSLGDLGSGEKV 117
           +    E     ++    I ++  + N    F   +V        LR    L +L   + V
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNV 153

Query: 118 --HGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNA 175
              G     G  K      + +       CL    KV  KM  +  + W ++  +     
Sbjct: 154 LIDG---VLGSGK------TWVALDV---CLSY--KVQCKMDFK--IFWLNL-KNCNSPE 196

Query: 176 DVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHG--HVLRRKIKIDGPL 233
            V   L+M   ++ + ++P++ +            S      IH     LRR +K   P 
Sbjct: 197 TV---LEMLQKLLYQ-IDPNWTSRSDH--------SSNIKLRIHSIQAELRRLLK-SKPY 243

Query: 234 GNSFIVMYSKCGDLLSAERTFVKIEKRC----TTSWTAMISCYNRSGWFQKALESFVKML 289
            N  +V+       +   + +      C    TT +  +    + +     +L+     L
Sbjct: 244 ENCLLVL-----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 290 EVKEEPNLITLITVLG-SCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGK 348
              E  +L  L+  L      L   RE  + + + +   +  E    G A  + +    K
Sbjct: 299 TPDEVKSL--LLKYLDCRPQDLP--REVLTTNPRRL--SIIAESIRDGLATWDNW----K 348

Query: 349 MSECEKVIHAIGERNILSWNMLISEYARK------------GMSKEALELLVQMQTWGLM 396
              C+K+   I      S N+L     RK             +    L L+     W  +
Sbjct: 349 HVNCDKLTTIIE----SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-----WFDV 399

Query: 397 P--DSFSVA-----SSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQS---SLIDMYS-K 445
              D   V       SL       S    + I    +++  K E   +   S++D Y+  
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKEST---ISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 446 CGFKNLAYLLFERIQQKSVVMWNSMICGF--Y--QNGNSLEAINLFHQMYLN 493
             F +                 +        +  +N    E + LF  ++L+
Sbjct: 457 KTFDS---------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 77/545 (14%), Positives = 153/545 (28%), Gaps = 177/545 (32%)

Query: 282 LESFVKMLEVKE-------------------EPNLIT----LITVLGSCAGLGWLREGKS 318
            ++FV   + K+                     + ++    L   L        L + + 
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--------LSKQEE 77

Query: 319 VHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKG 378
           +  + + + +   Y +L         E  + S   ++   I +R+ L +N     +A+  
Sbjct: 78  MVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMY--IEQRDRL-YND-NQVFAKYN 130

Query: 379 MSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHG------HVIKID-CK 431
           +S+   +  ++++              L    NV        I G        + +D C 
Sbjct: 131 VSRL--QPYLKLRQA---------LLELRPAKNVL-------IDGVLGSGKTWVALDVCL 172

Query: 432 DEFVQSSL------IDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAI- 484
              VQ  +      +++       N    + E +Q+    +   +   +    +    I 
Sbjct: 173 SYKVQCKMDFKIFWLNL----KNCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIK 224

Query: 485 -----------NLF-HQMYLNCLE-MDEVTFLTAIQA----C---------SNIGQLEKG 518
                       L   + Y NCL  +  V    A  A    C              L   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 519 KWVHHKLISYGVRKDIYIDTALTDMYAKC-----GDL-----QTAQRVFDSMSERNVVSW 568
              H  L              +  +  K       DL      T  R   S+   ++   
Sbjct: 285 TTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDG 340

Query: 569 SAMIDCYGMHG--QLNDA--ASL-------FKQMLDS-GIKPNEV----TFMNILWACSH 612
            A  D +      +L     +SL       +++M D   + P         ++++W    
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 613 SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKM----IHSMPFPANGS 668
              V                        +V+ L +   +E   K     I S+       
Sbjct: 401 KSDVMV----------------------VVNKLHKYSLVEKQPKESTISIPSIYL----E 434

Query: 669 IWGALLNGCRIHKRI----DVMKTIEKELSVTGTNDN------GYYTLLSNIYAEEGNWD 718
           +   L N   +H+ I    ++ KT + +  +    D       G++  L NI   E    
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPE-RMT 491

Query: 719 EFGKV 723
            F  V
Sbjct: 492 LFRMV 496

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 44/295 (14%), Positives = 79/295 (26%), Gaps = 88/295 (29%)

Query: 71  MWNNFFEESILLYHKMIREQATISNFI---YPSVLRACSSLGDLGSGEKVHGRIIKCGFD 127
            W+N+       +    +    I + +    P+  R       L          +   F 
Sbjct: 343 TWDNW------KHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLS---------V---FP 382

Query: 128 KDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVV------SWSSIIASYFDNADVSEGL 181
               I T +L          D   V +K+    +V      S  SI + Y +     E  
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 182 KMFHSMVRE-----------GVEPDFVTM---------LSLAEACGELCSLRPARSIHGH 221
              H  + +            + P ++           L   E   E  +L     +   
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFLDFR 501

Query: 222 VLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVK-IEKRCTTSWTAMISCYNRSGWFQK 280
            L +KI+ D    N+         + L   + +   I              Y R      
Sbjct: 502 FLEQKIRHDSTAWNA----SGSILNTLQQLKFYKPYICDNDPK--------YER---LVN 546

Query: 281 ALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYL 335
           A+  F+     K E NLI                   S +  ++R  +  E + +
Sbjct: 547 AILDFLP----KIEENLI------------------CSKYTDLLRIALMAEDEAI 579

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 55/382 (14%), Positives = 111/382 (29%), Gaps = 50/382 (13%)

Query: 240 MYSKCGDLLSAERTFVKIEKRC----TTSWTAMISCYNRSGW---------FQKALESFV 286
           +Y   G L   +    K++  C    +             GW          ++A   F 
Sbjct: 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162

Query: 287 KMLEVKEEPNLITLITVLGSCA----GLGWLREGKSVHCQIIRKGMGPEYDY----LGPA 338
           K LE K  P      + L   +         +       Q IR  + P+  Y    L   
Sbjct: 163 KALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQYLKVLLALK 218

Query: 339 LIEFYAECGKMSECEKVI---HAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGL 395
           L +   E  +  E EK++                    Y RK    +A+ELL +      
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE--Y 276

Query: 396 MPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLL 455
           +P++  +   +  C      Q+       +       E +  + +    K          
Sbjct: 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA-VAHLKKA--------- 326

Query: 456 FERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG-- 513
            +        + + +           EA   F +         E+T +         G  
Sbjct: 327 -DEANDNLFRVCSILASLHALADQYEEAEYYFQK----EFSK-ELTPVAKQLLHLRYGNF 380

Query: 514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMID 573
           QL + K     +  +   + + I+    +       LQ   ++  S +  +  +   +  
Sbjct: 381 QLYQMKCEDKAIHHF--IEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438

Query: 574 CYGMHGQLNDAASLFKQMLDSG 595
              ++ ++  A    ++ L+SG
Sbjct: 439 LQELNEKMQQADEDSERGLESG 460

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 18/170 (10%), Positives = 48/170 (28%), Gaps = 7/170 (4%)

Query: 490 MYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGD 549
                LE             +     ++   ++ + IS  ++K++ +  A  D       
Sbjct: 55  EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114

Query: 550 LQTAQRVFDSMSERN----VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMN 605
            +    +++ +         + +   +        +     +FK+  +     + V    
Sbjct: 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174

Query: 606 ILWACSHSGSVEEGKFYFN-AMRIFGVEPDLQHYACMVDLLSRSGDIEGA 654
            L     S         F   ++ +G  P+       +D LS   +    
Sbjct: 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLSHLNEDNNT 222

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 30/183 (16%), Positives = 74/183 (40%), Gaps = 11/183 (6%)

Query: 435 VQSSLIDMYSKCGFKNLAYLLFER----IQQKSVVMWNSMICGFYQNGNSLEAINLFHQM 490
           + +   DM +   F + A  ++ER    + +K+++++ +            +  ++++++
Sbjct: 288 LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347

Query: 491 YLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYG-VRKDIYIDTALTDMYAKCGD 549
                    + ++  ++       ++ G+ +  K       R  +Y+  AL + Y    D
Sbjct: 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC-SKD 406

Query: 550 LQTAQRVFDSMSER---NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNI 606
              A ++F+   ++         A ID      + N+   LF+++L SG  P E      
Sbjct: 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK--SGE 464

Query: 607 LWA 609
           +WA
Sbjct: 465 IWA 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	741
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 39/345 (11%), Positives = 95/345 (27%), Gaps = 30/345 (8%)

Query: 59  DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVH 118
           ++ +  +L   +      + S       I+          P +  A S+LG++       
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--------QNPLLAEAYSNLGNVYKERGQL 83

Query: 119 GRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVS 178
              I+       +    I         L  A  +   + +       +       +   +
Sbjct: 84  QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143

Query: 179 EGLKMFHSMVRE-------GVEPDFVT-MLSLAEACGELCSLRPARSIHGHVLRRKIKID 230
               +      +         +P+F     +L         +  A       +       
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 203

Query: 231 GPLGNSFIVMYSKCGDLLSAERTF---VKIEKRCTTSWTAMISCYNRSGWFQKALESFVK 287
               N    +  +      A   +   + +          +   Y   G    A++++ +
Sbjct: 204 DAYIN-LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 288 MLEVKEEPNLITLITVLGSC-AGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAEC 346
            +E++  P+       L +     G + E +  +   +R  + P +      L     E 
Sbjct: 263 AIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318

Query: 347 GKMSE----CEKVIHAIGERNILSWNMLISEYARKGMSKEALELL 387
           G + E      K +  +      + + L S   ++G  +EAL   
Sbjct: 319 GNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQEALMHY 362

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	741
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.79
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.48
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.4
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.39
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.32
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.01
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.98
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.93
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.86
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.8
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.69
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.47
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.23
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.2
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.2
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.05
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.03
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.98
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.92
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.91
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.72
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.57
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.48
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.93
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.7
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.49
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.0

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.3e-26  Score=167.33  Aligned_cols=239  Identities=13%  Similarity=0.120  Sum_probs=175.4

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf             99966992899999999998899988999999999971405488499999999980998881059999999994399999
Q 004632          473 GFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQT  552 (741)
Q Consensus       473 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  552 (741)
                      .....+....+...+....... +.+...+..+...+...++.+.|...++...+..+ .+...+..+...+...|++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~  221 (388)
T d1w3ba_         144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDR  221 (388)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHH
T ss_conf             2211000135678888740258-61068998636301024719999999999998494-649999997155220052999


Q ss_pred             HHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999998349---988778999999999629989999999999986999887-8999999998420998989999999998
Q 004632          553 AQRVFDSMS---ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       553 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      |...+++..   ..+...+..+...+...|++++|...++++.+  ..|+. ..+..+...+...|++++|...++....
T Consensus       222 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  299 (388)
T d1w3ba_         222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR  299 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             99999985777554799999999999987899999999999998--4999899999999999974879999999986540


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             299889407989999998239938899989829-9-99998899999999974199999999999986159999516999
Q 004632          629 FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTL  706 (741)
Q Consensus       629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  706 (741)
                      .. +.+...+..++.++...|++++|++.+++. . .|.+...+..++.++...|++++|...++++++++|+++.++..
T Consensus       300 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             48-73001015799999987899999999999998688989999999999998599999999999999709998999999


Q ss_pred             HHHHHHHCCC
Q ss_conf             9999950399
Q 004632          707 LSNIYAEEGN  716 (741)
Q Consensus       707 l~~~~~~~g~  716 (741)
                      |+.+|.+.||
T Consensus       379 lg~~~~~~~D  388 (388)
T d1w3ba_         379 MGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHCCC
T ss_conf             9999998589

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-24  Score=159.63  Aligned_cols=352  Identities=12%  Similarity=0.013  Sum_probs=205.1

Q ss_pred             HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99759944999999999977989889889999998504087389999999999836884016889999999329989999
Q 004632          374 YARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAY  453 (741)
Q Consensus       374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  453 (741)
                      +.+.|++++|...++++.+.. +-+...+..+...+...|+++.|...++.+++..|....++..++.++...|++++|.
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~   87 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI   87 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             998699999999999999868-9989999999999998699999999999999859998999999999964200022222


Q ss_pred             HHHHHCCCC---CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             999961579---90079999999996699289999999999889998899999999997140548849999999998099
Q 004632          454 LLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGV  530 (741)
Q Consensus       454 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  530 (741)
                      ..+......   +..............+....+........... .................+....+...+.......+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T d1w3ba_          88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP  166 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             22221211222222222222222222222222222211122222-22222222222222110001356788887402586


Q ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             88810599999999943999999999983499--8-87789999999996299899999999999869998878999999
Q 004632          531 RKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNIL  607 (741)
Q Consensus       531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll  607 (741)
                       .....+..+...+...|+++.|...+++..+  | +...|..+...+...|++++|...+++..... ..+...+..+.
T Consensus       167 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  244 (388)
T d1w3ba_         167 -NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA  244 (388)
T ss_dssp             -TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             -CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             -1068998636301024719999999999998494649999997155220052999999999857775-54799999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             998420998989999999998299889407989999998239938899989829--999998899999999974199999
Q 004632          608 WACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDV  685 (741)
Q Consensus       608 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~  685 (741)
                      ..+...|++++|...++++.+.. +-+...+..++.++...|++++|.+.++..  ..+.+...+..+...+...|++++
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  323 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf             99998789999999999999849-99899999999999974879999999986540487300101579999998789999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             999999986159999516999999995039917899999999867
Q 004632          686 MKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT  730 (741)
Q Consensus       686 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  730 (741)
                      |...++++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus       324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999999999868898999999999999859999999999999970

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.8e-17  Score=112.43  Aligned_cols=144  Identities=13%  Similarity=0.023  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             998999999999998699-9887899999999842099898999999999829988940798999999823993889998
Q 004632          579 GQLNDAASLFKQMLDSGI-KPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKM  657 (741)
Q Consensus       579 ~~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  657 (741)
                      +...++...+.++.+... .++...+..+...+...|++++|...+++..... +-+...+..++.++...|++++|++.
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~  228 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA  228 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHH
T ss_conf             57999999999999971301222111036888888887755002111222222-22211101333012211110137888


Q ss_pred             HHHC-C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-----------HHHHHHHHHHHCCCHHHHHHH
Q ss_conf             9829-9-9999889999999997419999999999998615999951-----------699999999503991789999
Q 004632          658 IHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG-----------YYTLLSNIYAEEGNWDEFGKV  723 (741)
Q Consensus       658 ~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~  723 (741)
                      ++++ . .|.+...+..++.++...|++++|...+++++++.|++..           .+..+..++...|+.+.+...
T Consensus       229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             7789988432499999999999987899999999999997097570011245999999999999999982988999999

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.1e-16  Score=106.97  Aligned_cols=114  Identities=14%  Similarity=0.196  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             5488499999999980998-8810599999999943999999999983499---88778999999999629989999999
Q 004632          513 GQLEKGKWVHHKLISYGVR-KDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLF  588 (741)
Q Consensus       513 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~  588 (741)
                      +....+...+....+..+. .+..++..+...+...|++++|...+++...   .+...|..+..++...|++++|...+
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf             57999999999999971301222111036888888887755002111222222222111013330122111101378887


Q ss_pred             HHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999986999887-8999999998420998989999999998
Q 004632          589 KQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       589 ~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      +++.+  ..|+. ..+..+..+|...|++++|+..|+++++
T Consensus       230 ~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         230 RRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             78998--8432499999999999987899999999999997

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.5e-11  Score=81.40  Aligned_cols=22  Identities=9%  Similarity=-0.151  Sum_probs=7.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9999974199999999999986
Q 004632          673 LLNGCRIHKRIDVMKTIEKELS  694 (741)
Q Consensus       673 l~~~~~~~~~~~~a~~~~~~~~  694 (741)
                      +...+...|++++|...+++++
T Consensus       297 la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         297 LNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999998789999999999999

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=3.2e-13  Score=91.43  Aligned_cols=230  Identities=8%  Similarity=-0.057  Sum_probs=154.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf             69928999999999988999889999999999714--0548849999999998099888105999999999439999999
Q 004632          477 NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSN--IGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQ  554 (741)
Q Consensus       477 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  554 (741)
                      .|++++|+..++...... +-+...+......+..  .++.+.+...+..+.+..+......+......+...+..+.|.
T Consensus        86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al  164 (334)
T d1dcea1          86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             778999999999999868-8867989886489988430428999999999985592121111057899987445528999


Q ss_pred             HHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99983499---887789999999996299899999999999869998878999999998420998989999999998299
Q 004632          555 RVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGV  631 (741)
Q Consensus       555 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  631 (741)
                      ..++.+.+   .+...|..+...+...|++++|...+.+..+  ..|+..   .....+...+..+++...+....... 
T Consensus       165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~-  238 (334)
T d1dcea1         165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR-  238 (334)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHC-
T ss_conf             999998871898799999999999982688989998877677--689999---99999988244148899999887718-


Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             889407989999998239938899989829-9-99998899999999974199999999999986159999516999999
Q 004632          632 EPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSN  709 (741)
Q Consensus       632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  709 (741)
                      ++....+..++..+...++.++|...+.+. . .|.+...+..++..+...|++++|...++++++++|.+..+|..|..
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~  318 (334)
T d1dcea1         239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  318 (334)
T ss_dssp             CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             66056788799999998669999999998876291379999999999987899999999999999879663999999999


Q ss_pred             HHHH
Q ss_conf             9950
Q 004632          710 IYAE  713 (741)
Q Consensus       710 ~~~~  713 (741)
                      .+.-
T Consensus       319 ~~~~  322 (334)
T d1dcea1         319 KFLL  322 (334)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9867

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7e-12  Score=83.44  Aligned_cols=12  Identities=8%  Similarity=0.166  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999998
Q 004632          582 NDAASLFKQMLD  593 (741)
Q Consensus       582 ~~A~~~~~~~~~  593 (741)
                      ++|+..+.++.+
T Consensus       203 ~~ai~~~~~al~  214 (315)
T d2h6fa1         203 EREVQYTLEMIK  214 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             776799999998

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.3e-11  Score=80.35  Aligned_cols=14  Identities=14%  Similarity=0.242  Sum_probs=4.3

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99899999999999
Q 004632          579 GQLNDAASLFKQML  592 (741)
Q Consensus       579 ~~~~~A~~~~~~~~  592 (741)
                      |++++|+..+++++
T Consensus       160 ~~~~~Al~~~~~al  173 (315)
T d2h6fa1         160 KLWDNELQYVDQLL  173 (315)
T ss_dssp             TCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             86678999999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2.5e-10  Score=74.22  Aligned_cols=90  Identities=8%  Similarity=0.086  Sum_probs=40.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCCCCCH-HHHHHH
Q ss_conf             9999999439999999999834998-------877899999999962998999999999998----6999887-899999
Q 004632          539 ALTDMYAKCGDLQTAQRVFDSMSER-------NVVSWSAMIDCYGMHGQLNDAASLFKQMLD----SGIKPNE-VTFMNI  606 (741)
Q Consensus       539 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~-~~~~~l  606 (741)
                      .....+...|+++.|...+......       ....+..+...+...|++++|...++++..    .+..|+. ..+..+
T Consensus       218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  297 (366)
T d1hz4a_         218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL  297 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999986044898999999999762246667778899999999875879999999999998876426674799999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9998420998989999999998
Q 004632          607 LWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       607 l~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      ...|...|++++|.+.+++..+
T Consensus       298 a~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         298 NQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999987899999999999999

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5.4e-10  Score=72.20  Aligned_cols=184  Identities=10%  Similarity=0.109  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-C-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             884999999999809988810599999999943999999999983499--8-8-77899999999962998999999999
Q 004632          515 LEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-N-VVSWSAMIDCYGMHGQLNDAASLFKQ  590 (741)
Q Consensus       515 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~  590 (741)
                      .+.+..+++...+...+.+...+...+....+.|+.+.|..+++++.+  | + ...|...+....+.|+.+.|..+|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             59999999999987499879999999999986133899999999999871578699999999999982786889999999


Q ss_pred             HHHCCCCCC-HHHHHHHHH-HHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC----CCC
Q ss_conf             998699988-789999999-98420998989999999998299889407989999998239938899989829----999
Q 004632          591 MLDSGIKPN-EVTFMNILW-ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM----PFP  664 (741)
Q Consensus       591 ~~~~~~~p~-~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~  664 (741)
                      +.+.  .|+ ...+..... .+...|+.+.|..+|+.+.... +.+...+..+++.+.+.|+.+.|..+|++.    +.+
T Consensus       160 al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         160 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9980--888679999999999876557789999999999861-0038899999999998698689999999999827898


Q ss_pred             C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             9--988999999999741999999999999861599995
Q 004632          665 A--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN  701 (741)
Q Consensus       665 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  701 (741)
                      |  ....|..++.....+|+.+.+..+.+++.+..|...
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             689999999999999984999999999999998771102

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=6.4e-12  Score=83.69  Aligned_cols=193  Identities=9%  Similarity=-0.035  Sum_probs=90.1

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHCCCHHH
Q ss_conf             99714054884999999999809988810599999999943999999999983499--8-87789999999996299899
Q 004632          507 QACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLND  583 (741)
Q Consensus       507 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~  583 (741)
                      ..+.+.|+++.|...|+...+..+. ++.++..+..++...|++++|...|+++.+  | +..++..+..++...|+++.
T Consensus        45 ~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  123 (259)
T d1xnfa_          45 VLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL  123 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999879999999999985434999-889996004278887778875234468999876111158889999998766799


Q ss_pred             HHHHHHHHHHCCCCCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH-HC
Q ss_conf             999999999869998878-9999999984209989899999999982998894079899999982399388999898-29
Q 004632          584 AASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH-SM  661 (741)
Q Consensus       584 A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~  661 (741)
                      |...+++..+  ..|+.. ....+...+...+..+....+.......  .+....+. ++..+.............. ..
T Consensus       124 A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  198 (259)
T d1xnfa_         124 AQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADA  198 (259)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999986--53000788899999998853587899999876403--14443455-7788888877777899999999


Q ss_pred             C----C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             9----9-999889999999997419999999999998615999951699
Q 004632          662 P----F-PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYT  705 (741)
Q Consensus       662 ~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  705 (741)
                      .    . +....++..++..+...|++++|...+++++..+|++...|.
T Consensus       199 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             9866408450999999999999878999999999999983997799999

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.9e-10  Score=73.78  Aligned_cols=16  Identities=19%  Similarity=0.339  Sum_probs=5.1

Q ss_pred             HCCCCHHHHHHHHHHH
Q ss_conf             4209989899999999
Q 004632          611 SHSGSVEEGKFYFNAM  626 (741)
Q Consensus       611 ~~~~~~~~a~~~~~~~  626 (741)
                      ...|+.+.|..+|++.
T Consensus       214 ~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         214 SHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HTTCCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH
T ss_conf             9869868999999999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=7.5e-11  Score=77.29  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             899999999962998999999999998
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQMLD  593 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~  593 (741)
                      +|..+..++...|++++|+..|+++.+
T Consensus        73 a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          73 VFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             996004278887778875234468999

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.3e-11  Score=81.86  Aligned_cols=179  Identities=7%  Similarity=0.039  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHCCCC---CCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             389999999999836884016-889999999329989999999961579---9007999999999669928999999999
Q 004632          415 LQLGLQIHGHVIKIDCKDEFV-QSSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQM  490 (741)
Q Consensus       415 ~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m  490 (741)
                      .+.+...+..++...+..... .......+...+..+.|...++.....   +...|..+...+...|++++|...+...
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~  204 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP  204 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             89999999999855921211110578999874455289999999988718987999999999999826889899988776


Q ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCH---HH
Q ss_conf             988999889999999999714054884999999999809988810599999999943999999999983499887---78
Q 004632          491 YLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNV---VS  567 (741)
Q Consensus       491 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~  567 (741)
                      ...  .|..   ......+...+..+.+...+.......+ +....+..+...+...++..+|...+.+..+.++   ..
T Consensus       205 ~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  278 (334)
T d1dcea1         205 ENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT  278 (334)
T ss_dssp             HHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHH--HHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             776--8999---9999999882441488999998877186-605678879999999866999999999887629137999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             9999999996299899999999999869998878
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV  601 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  601 (741)
                      +..+..++...|+.++|...++++.+  +.|+..
T Consensus       279 ~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~  310 (334)
T d1dcea1         279 IILLMRALDPLLYEKETLQYFSTLKA--VDPMRA  310 (334)
T ss_dssp             HHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
T ss_conf             99999999878999999999999998--796639

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=1.4e-08  Score=63.79  Aligned_cols=120  Identities=7%  Similarity=-0.045  Sum_probs=47.6

Q ss_pred             CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC------CHHHHHHHHHH
Q ss_conf             29989999999999986----99988-789999999984209989899999999982998894------07989999998
Q 004632          578 HGQLNDAASLFKQMLDS----GIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDL------QHYACMVDLLS  646 (741)
Q Consensus       578 ~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~  646 (741)
                      .|+++.|+..++++.+.    +..+. ..++..+...+...|++++|...++++.........      ..+...+.++.
T Consensus       131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  210 (290)
T d1qqea_         131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL  210 (290)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             87899998899999999873376033346889999999981739999999999998681332455569999999999999


Q ss_pred             HCCCHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHCCC
Q ss_conf             239938899989829-9999------98899999999974--199999999999986159
Q 004632          647 RSGDIEGAFKMIHSM-PFPA------NGSIWGALLNGCRI--HKRIDVMKTIEKELSVTG  697 (741)
Q Consensus       647 ~~~~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~  697 (741)
                      ..++++.|...+++. ...|      .......++.++..  .+.+++|...++++.+++
T Consensus       211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf             846599999999999975977444399999999999998368999999999998875468

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=2.8e-09  Score=67.88  Aligned_cols=89  Identities=10%  Similarity=0.013  Sum_probs=42.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCC
Q ss_conf             999999994399999999998349--9-88778999999999629989999999999986999887-8999999998420
Q 004632          538 TALTDMYAKCGDLQTAQRVFDSMS--E-RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHS  613 (741)
Q Consensus       538 ~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~  613 (741)
                      ......+.+.|++++|...|.+..  . .+...|..+..+|.+.|+++.|+..++++.+  +.|+. .+|..+..+|...
T Consensus         8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHC
T ss_conf             99999999869999999999999985999899998178987410000012478888887--1887389999999999987


Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             998989999999998
Q 004632          614 GSVEEGKFYFNAMRI  628 (741)
Q Consensus       614 ~~~~~a~~~~~~~~~  628 (741)
                      |++++|...|+++..
T Consensus        86 ~~~~~A~~~~~~al~  100 (201)
T d2c2la1          86 ESYDEAIANLQRAYS  100 (201)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             999999999999987

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=8.2e-08  Score=59.14  Aligned_cols=139  Identities=9%  Similarity=0.003  Sum_probs=99.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHH
Q ss_conf             999994399999999998349988778999999999629989999999999986999887-8999999998420998989
Q 004632          541 TDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEG  619 (741)
Q Consensus       541 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a  619 (741)
                      ...+...|+++.|.+.|.++.+|+...|..+..++...|++++|+..|++.++  +.|+. ..|..+..++...|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999877999999999864898899999999999985891467878999999--8552346678899999854249999


Q ss_pred             HHHHHHHHHCCCCCCCC-HHHHHHHHHHHCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf             99999999829988940-79899999982399388999898299999-98899999999974199999999999986159
Q 004632          620 KFYFNAMRIFGVEPDLQ-HYACMVDLLSRSGDIEGAFKMIHSMPFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTG  697 (741)
Q Consensus       620 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  697 (741)
                      ...|++..... +.+.. .|..       .|.           ..+. ...++..+..++...|++++|.+.+++++.+.
T Consensus        90 ~~~~~kAl~~~-~~n~~~~~~~-------~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQL-RGNQLIDYKI-------LGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTT-TTCSEEECGG-------GTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHC-CCCCHHHHHH-------HHH-----------HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             99999999867-2673678998-------665-----------4363058899999999999789999999999998369


Q ss_pred             CCC
Q ss_conf             999
Q 004632          698 TND  700 (741)
Q Consensus       698 p~~  700 (741)
                      |..
T Consensus       151 ~~~  153 (192)
T d1hh8a_         151 SEP  153 (192)
T ss_dssp             CSG
T ss_pred             CCC
T ss_conf             980

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=5.3e-08  Score=60.28  Aligned_cols=61  Identities=10%  Similarity=0.113  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-----H-HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999962998999999999998699988-----7-8999999998420998989999999998
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-----E-VTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      +..+...+...|++++|...++++........     . ..+...+..+...++++.|...+++..+
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             8999999998173999999999999868133245556999999999999984659999999999997

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.3e-08  Score=59.46  Aligned_cols=43  Identities=19%  Similarity=0.070  Sum_probs=13.3

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             9989999999961579900799999999966992899999999
Q 004632          447 GFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQ  489 (741)
Q Consensus       447 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  489 (741)
                      |+++.|...|..+..+++.+|..+..+|...|++++|+..|++
T Consensus        19 ~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~k   61 (192)
T d1hh8a_          19 KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR   61 (192)
T ss_dssp             TCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             7999999999864898899999999999985891467878999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1.3e-08  Score=63.97  Aligned_cols=26  Identities=8%  Similarity=0.064  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             89999999996299899999999999
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQML  592 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~  592 (741)
                      +|..+..++...|++++|+..|+++.
T Consensus        74 a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          74 AHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999999998799999999999998

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-07  Score=58.48  Aligned_cols=119  Identities=4%  Similarity=-0.153  Sum_probs=80.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCC
Q ss_conf             9999998420998989999999998299889407989999998239938899989829--99999889999999997419
Q 004632          604 MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK  681 (741)
Q Consensus       604 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~  681 (741)
                      ......|.+.|++++|+..|+++.+.. +-+...|..++.++...|++++|...++++  -.|.+...|..++.++...|
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             999999999589999999866021100-0113332456788874054212888899999875446687799999999949


Q ss_pred             CHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--HHCCCHHHHHHH
Q ss_conf             999999999998615999951699999999--503991789999
Q 004632          682 RIDVMKTIEKELSVTGTNDNGYYTLLSNIY--AEEGNWDEFGKV  723 (741)
Q Consensus       682 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~  723 (741)
                      ++++|...++++..+.|.++.++..+..+.  ...+.+++|...
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999998999987299979999999999999998989999757

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.77  E-value=2.8e-06  Score=49.99  Aligned_cols=113  Identities=11%  Similarity=-0.082  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHH
Q ss_conf             989899999999982998894079899999982----39938899989829999998899999999974----1999999
Q 004632          615 SVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR----SGDIEGAFKMIHSMPFPANGSIWGALLNGCRI----HKRIDVM  686 (741)
Q Consensus       615 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a  686 (741)
                      ....+...+......   .+...+..+...+..    ..+...+...++......+......+...+..    ..+++.|
T Consensus       125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHHHHHHHHHHCC---CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf             157788875552001---11010445555640688743342200012211323222233221131212676543103444


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCC
Q ss_conf             999999861599995169999999950----3991789999999986799
Q 004632          687 KTIEKELSVTGTNDNGYYTLLSNIYAE----EGNWDEFGKVRSIMEVTGL  732 (741)
Q Consensus       687 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  732 (741)
                      ...++++.+.+  ++..+..|+.+|..    ..+.++|.++|++..+.|.
T Consensus       202 ~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         202 LARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             54676653036--8999999999998399976189999999999998769

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-07  Score=57.82  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=65.4

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             99998420998989999999998299889407989999998239938899989829--9999988999999999741999
Q 004632          606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRI  683 (741)
Q Consensus       606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  683 (741)
                      -...+...|++++|+..|+++++.. +-+...|..++.++...|++++|+..++++  -.|.++..|..++.++...|++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
T ss_conf             9999999699999999999988619-960134300011011000011210013467774022026778899999981279


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             9999999998615999951699999999
Q 004632          684 DVMKTIEKELSVTGTNDNGYYTLLSNIY  711 (741)
Q Consensus       684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~  711 (741)
                      ++|...++++++..|.++.++..+..+-
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             9999999999984989899999999783

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.1e-07  Score=58.43  Aligned_cols=91  Identities=8%  Similarity=-0.081  Sum_probs=63.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCH
Q ss_conf             9999998239938899989829--99999889999999997419999999999998615999951699999999503991
Q 004632          640 CMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNW  717 (741)
Q Consensus       640 ~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  717 (741)
                      .-+..+...|++++|+..++++  ..|.+...|..++.++...|++++|+..++++++++|+++..|..++.++...|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH
T ss_conf             99999999699999999999988619960134300011011000011210013467774022026778899999981279


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             7899999999867
Q 004632          718 DEFGKVRSIMEVT  730 (741)
Q Consensus       718 ~~A~~~~~~~~~~  730 (741)
                      ++|+..+++..+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999984

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.4e-08  Score=58.79  Aligned_cols=87  Identities=10%  Similarity=0.087  Sum_probs=44.5

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999629989999999999986999887-89999999984209989899999999982998894079899999982399
Q 004632          572 IDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD  650 (741)
Q Consensus       572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  650 (741)
                      ...+.+.|++++|+..|+++.+  +.|+. ..|..+..++...|++++|...|+++++.. +-+...|..++.++...|+
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
T ss_conf             9999995899999998660211--000113332456788874054212888899999875-4466877999999999499


Q ss_pred             HHHHHHHHHHC
Q ss_conf             38899989829
Q 004632          651 IEGAFKMIHSM  661 (741)
Q Consensus       651 ~~~A~~~~~~~  661 (741)
                      +++|...+++.
T Consensus        94 ~~eA~~~~~~a  104 (159)
T d1a17a_          94 FRAALRDYETV  104 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999989999

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.5e-09  Score=68.18  Aligned_cols=26  Identities=8%  Similarity=-0.203  Sum_probs=8.4

Q ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             86148879999989419937999999
Q 004632          331 EYDYLGPALIEFYAECGKMSECEKVI  356 (741)
Q Consensus       331 ~~~~~~~~l~~~~~~~~~~~~A~~~~  356 (741)
                      ++...++.|+.++...|+..+|...|
T Consensus       184 ~~~~~~~~Lg~~~~~~~~~~~A~~~y  209 (497)
T d1ya0a1         184 SNGQPYNQLAILASSKGDHLTTIFYY  209 (497)
T ss_dssp             TBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             96599999999999869999999999

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.1e-09  Score=66.94  Aligned_cols=23  Identities=4%  Similarity=0.102  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999999954993589999999
Q 004632          265 WTAMISCYNRSGWFQKALESFVK  287 (741)
Q Consensus       265 ~~~li~~~~~~~~~~~a~~~~~~  287 (741)
                      |+.+...+...|+..+|+..|.+
T Consensus       189 ~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999986999999999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.4e-07  Score=54.26  Aligned_cols=132  Identities=11%  Similarity=-0.052  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999962998999999999998699988789999999984209989899999999982998894079899999982
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR  647 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  647 (741)
                      +......+.+.|++++|+..|++++..  .|....            ....-......+.       ..+|..++.+|.+
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~~-------~~~~~nla~~y~k   74 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQALR-------LASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCC------------CCHHHHHHHCHHH-------HHHHHHHHHHHHH
T ss_conf             999999999969999999999999887--510100------------0357776406467-------9999999999886


Q ss_pred             CCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf             39938899989829--99999889999999997419999999999998615999951699999999503991789
Q 004632          648 SGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF  720 (741)
Q Consensus       648 ~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  720 (741)
                      .|++++|+..+++.  -.|.+...+..++.++...|++++|...++++++++|+++.+...+..+....+...+.
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             421101100000001002231034677799998722299999999999972989899999999999999999999

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.62  E-value=9.9e-08  Score=58.65  Aligned_cols=91  Identities=9%  Similarity=-0.067  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             989999998239938899989829--999998899999999974199999999999986159999516999999995039
Q 004632          638 YACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG  715 (741)
Q Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  715 (741)
                      ....+..+.+.|++++|+..+++.  ..|.+...|..++.++...|++++|...++++++++|.+..++..++.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999987605899998861011211110012335456410125877410000011111100000378999999978


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9178999999998
Q 004632          716 NWDEFGKVRSIME  728 (741)
Q Consensus       716 ~~~~A~~~~~~~~  728 (741)
                      ++++|.+.+++..
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999981

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.54  E-value=2.5e-06  Score=50.24  Aligned_cols=93  Identities=5%  Similarity=-0.119  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             7989999998239938899989829--99999889999999997419999999999998615999951699999999503
Q 004632          637 HYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE  714 (741)
Q Consensus       637 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  714 (741)
                      .|..++.+|.+.|++++|+..++++  -.|.+...+..++.++...|++++|...+++++.++|++..+...+..+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99849999877622011000223222013104889998899998827899999999999985989899999999999999


Q ss_pred             CCHH-HHHHHHHHHHH
Q ss_conf             9917-89999999986
Q 004632          715 GNWD-EFGKVRSIMEV  729 (741)
Q Consensus       715 g~~~-~A~~~~~~~~~  729 (741)
                      +... ...+.+.+|.+
T Consensus       146 ~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         146 KEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             8699999999999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6e-07  Score=54.00  Aligned_cols=107  Identities=14%  Similarity=-0.005  Sum_probs=79.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC---HHHHHHHHHHC-CCCCCH---HHHHHHHHH
Q ss_conf             99999984209989899999999982998894079899999982399---38899989829-999998---899999999
Q 004632          604 MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD---IEGAFKMIHSM-PFPANG---SIWGALLNG  676 (741)
Q Consensus       604 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~-~~~~~~---~~~~~l~~~  676 (741)
                      ..++..+...+++++|.+.|++....+ +.++.++..++.++.+.++   +++|+.+++++ ...|++   .++..++.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             779887369999999999999988329-9989999999999998512678999999999998606993199999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             97419999999999998615999951699999999
Q 004632          677 CRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIY  711 (741)
Q Consensus       677 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  711 (741)
                      +...|++++|...++++++++|++..+...+..+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99973169999999999976909899999999999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.5e-06  Score=51.61  Aligned_cols=59  Identities=14%  Similarity=0.036  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999999996299899999999999869998-878999999998420998989999999998
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      |..+..+|.+.|++++|+..+++.+.  +.| +..++..+..++...|++++|...|+.+.+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998864211011000000010--0223103467779999872229999999999997

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.41  E-value=2.1e-06  Score=50.75  Aligned_cols=85  Identities=14%  Similarity=0.017  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             407989999998239938899989829-9-99998899999999974199999999999986159999516999999995
Q 004632          635 LQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA  712 (741)
Q Consensus       635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  712 (741)
                      ...+..++.++.+.|++++|+..++++ . .|.+...|..++.++...|+++.|...++++++++|++..+...+..+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999899999864021013666554431000223677769999998047999999999999859899999999999999


Q ss_pred             HCCCHHH
Q ss_conf             0399178
Q 004632          713 EEGNWDE  719 (741)
Q Consensus       713 ~~g~~~~  719 (741)
                      ......+
T Consensus       157 ~l~~~~~  163 (169)
T d1ihga1         157 KIKAQKD  163 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9998999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.39  E-value=4.2e-06  Score=48.92  Aligned_cols=76  Identities=8%  Similarity=-0.119  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             7989999998239938899989829--999998899999999974199999999999986159999516999999995
Q 004632          637 HYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA  712 (741)
Q Consensus       637 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  712 (741)
                      +|..++.+|.+.|++++|++.++++  -.|.+..+|..++.++...|++++|...++++++++|++..+...+..+..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             996199999984653011101000100000001246776899999689999999999999829898999999999999

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.2e-06  Score=50.62  Aligned_cols=58  Identities=7%  Similarity=0.013  Sum_probs=28.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999999962998999999999998699988-78999999998420998989999999998
Q 004632          569 SAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      ..+...+...|++++|+..|++.++  +.|+ ...+..+..+|...|++++|+..++++++
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999999985999999999999988--4964589998688999881860778999999998

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.27  E-value=9.3e-06  Score=46.88  Aligned_cols=57  Identities=19%  Similarity=0.188  Sum_probs=21.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999996299899999999999869998-878999999998420998989999999998
Q 004632          570 AMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       570 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      .+..+|.+.|++++|+..++++.+  +.| +..+|..+..++...|++++|...|+...+
T Consensus        72 Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          72 NLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             199999984653011101000100--0000012467768999996899999999999998

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=9.3e-06  Score=46.87  Aligned_cols=57  Identities=11%  Similarity=0.067  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9999999996299899999999999869998-8789999999984209989899999999
Q 004632          568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAM  626 (741)
Q Consensus       568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~  626 (741)
                      +..+..++...|++++|+..++++..  ..| +...+..++.++...|+..+|++.|+++
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999999887990578999999998--49851999999999999855799999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=4.2e-06  Score=48.96  Aligned_cols=61  Identities=8%  Similarity=0.025  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             8999999999629989999999999986999887-89999999984209989899999999982
Q 004632          567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIF  629 (741)
Q Consensus       567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  629 (741)
                      .|..+..++.+.|++++|+..++++++  +.|+. ..|..+..++...|++++|+..|+++.+.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999899999864021013666554431--00022367776999999804799999999999985

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.20  E-value=1.6e-05  Score=45.50  Aligned_cols=57  Identities=16%  Similarity=0.073  Sum_probs=23.4

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999999962998999999999998699988-78999999998420998989999999998
Q 004632          570 AMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       570 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  628 (741)
                      .+..++.+.|++++|+..+++...  +.|+ ..++..+..++...|++++|...|+++..
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             499998776220110002232220--1310488999889999882789999999999998

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.20  E-value=5.7e-06  Score=48.13  Aligned_cols=128  Identities=9%  Similarity=-0.040  Sum_probs=84.8

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf             9962998999999999998699988-789999999984209989899999999982998894079899999982399388
Q 004632          575 YGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEG  653 (741)
Q Consensus       575 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  653 (741)
                      ..+.|++++|+..+++.++  ..|+ ...+..+...++..|++++|...++...+.. +-....+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCHH
T ss_conf             9888899999999999999--789999999999999998799999999999999869-9738999999999983466378


Q ss_pred             HHHHHHHC--CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             99989829--9999-9889999999997419999999999998615999951699
Q 004632          654 AFKMIHSM--PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYT  705 (741)
Q Consensus       654 A~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  705 (741)
                      +.......  ..+| ....+......+...|+.++|.+.++++.+..|..+..+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9987544420358647999999999999679989999999999833999981001

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=1.2e-05  Score=46.14  Aligned_cols=126  Identities=7%  Similarity=0.021  Sum_probs=71.6

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHCC----------CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             96299899999999999869998878-999999998420----------9989899999999982998894079899999
Q 004632          576 GMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHS----------GSVEEGKFYFNAMRIFGVEPDLQHYACMVDL  644 (741)
Q Consensus       576 ~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  644 (741)
                      -+.+.+++|...+++..+  ..|+.. .+..+..++...          +.+++|+..++++.+.. +.+...|..++.+
T Consensus         8 ~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_conf             987369999999999986--1883108999999999876213333677887888999999988730-1205877668999


Q ss_pred             HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             98239938899989829999998899999999974199999999999986159999516999999995039917899999
Q 004632          645 LSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVR  724 (741)
Q Consensus       645 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  724 (741)
                      |...|+..            ++...         ..+.++.|...++++++++|++..++..|....       +|.+.+
T Consensus        85 y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~  136 (145)
T d1zu2a1          85 YTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLH  136 (145)
T ss_dssp             HHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHH
T ss_pred             HHHCCCCH------------HHHHH---------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-------HHHHHH
T ss_conf             98701011------------35788---------988678763121100025988899999999999-------979789


Q ss_pred             HHHHHCCC
Q ss_conf             99986799
Q 004632          725 SIMEVTGL  732 (741)
Q Consensus       725 ~~~~~~~~  732 (741)
                      .++.+.|+
T Consensus       137 ~e~~k~~~  144 (145)
T d1zu2a1         137 AEAYKQGL  144 (145)
T ss_dssp             HHHHHSSS
T ss_pred             HHHHHHHC
T ss_conf             99998735

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.03  E-value=2.5e-05  Score=44.31  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=37.0

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             9999962998999999999998699988-789999999984209989899999999982998894079899999982399
Q 004632          572 IDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD  650 (741)
Q Consensus       572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  650 (741)
                      ...+.+.|++++|+..+++...  ..|+ ...+..+..++...|++++|+..++++.+.. +.+...+..++.+|...|+
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCC
T ss_conf             9999987605899998861011--211110012335456410125877410000011111-1000003789999999789


Q ss_pred             HHHHHHHHHH
Q ss_conf             3889998982
Q 004632          651 IEGAFKMIHS  660 (741)
Q Consensus       651 ~~~A~~~~~~  660 (741)
                      +++|++.+++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=0.00024  Score=38.39  Aligned_cols=14  Identities=7%  Similarity=0.323  Sum_probs=5.0

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             98999999999998
Q 004632          580 QLNDAASLFKQMLD  593 (741)
Q Consensus       580 ~~~~A~~~~~~~~~  593 (741)
                      +++.|...|++..+
T Consensus       197 d~~~A~~~~~~aa~  210 (265)
T d1ouva_         197 NFKEALARYSKACE  210 (265)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHC
T ss_conf             03444546766530

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=6e-05  Score=42.04  Aligned_cols=20  Identities=0%  Similarity=0.006  Sum_probs=6.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHH
Q ss_conf             98420998989999999998
Q 004632          609 ACSHSGSVEEGKFYFNAMRI  628 (741)
Q Consensus       609 ~~~~~~~~~~a~~~~~~~~~  628 (741)
                      .+...|++++|+..|++.++
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~   32 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKE   32 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
T ss_conf             99985999999999999988

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.92  E-value=8.8e-06  Score=47.02  Aligned_cols=49  Identities=16%  Similarity=0.176  Sum_probs=20.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf             20998989999999998299889407989999998239938899989829
Q 004632          612 HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM  661 (741)
Q Consensus       612 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  661 (741)
                      +.|++++|+..+++..+.. +-+...+..++.+|+..|++++|.+.++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a   56 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS   56 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             8889999999999999978-999999999999999879999999999999

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.91  E-value=3.8e-05  Score=43.25  Aligned_cols=26  Identities=8%  Similarity=-0.330  Sum_probs=10.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf             99999997419999999999998615
Q 004632          671 GALLNGCRIHKRIDVMKTIEKELSVT  696 (741)
Q Consensus       671 ~~l~~~~~~~~~~~~a~~~~~~~~~~  696 (741)
                      ..++.++...|++++|...+++++++
T Consensus       104 ~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1         104 YSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             52699999888888889999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.72  E-value=2e-05  Score=44.91  Aligned_cols=25  Identities=24%  Similarity=0.567  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             899999999999869998878999999
Q 004632          581 LNDAASLFKQMLDSGIKPNEVTFMNIL  607 (741)
Q Consensus       581 ~~~A~~~~~~~~~~~~~p~~~~~~~ll  607 (741)
                      ++.|.+.|+++.+  +.|+...+...+
T Consensus       102 ~~~A~~~~~kal~--l~P~~~~~~~~L  126 (145)
T d1zu2a1         102 FDLATQFFQQAVD--EQPDNTHYLKSL  126 (145)
T ss_dssp             HHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCC--CCCCHHHHHHHH
T ss_conf             7876312110002--598889999999

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00017  Score=39.37  Aligned_cols=73  Identities=10%  Similarity=-0.070  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHC-----C----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             989999998239938899989829-----9----9999889999999997419999999999998615999951699999
Q 004632          638 YACMVDLLSRSGDIEGAFKMIHSM-----P----FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLS  708 (741)
Q Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  708 (741)
                      +-.++..+.+.|++++|+..++++     .    ......++..++.++.+.|++++|...++++++++|+++.++..+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999997799999999999999886530147647899998726888657739888788779886929799999999


Q ss_pred             HH
Q ss_conf             99
Q 004632          709 NI  710 (741)
Q Consensus       709 ~~  710 (741)
                      ..
T Consensus        88 ~~   89 (95)
T d1tjca_          88 YF   89 (95)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=0.0011  Score=34.42  Aligned_cols=54  Identities=9%  Similarity=-0.057  Sum_probs=20.0

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             999997419999999999998615999951699999999503991789999999
Q 004632          673 LLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSI  726 (741)
Q Consensus       673 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  726 (741)
                      ++..+...|++++|...++++++.+|.+...|..++.+|...|+.++|++.|++
T Consensus        73 la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~  126 (179)
T d2ff4a2          73 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  126 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             999998879905789999999984985199999999999985579999999999

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.48  E-value=0.0015  Score=33.66  Aligned_cols=293  Identities=12%  Similarity=0.055  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHH
Q ss_conf             99999779898898899999985040873899999999998368840168899999993299899999999615799007
Q 004632          387 LVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVM  466 (741)
Q Consensus       387 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  466 (741)
                      +.++.+-=-.|+..-...+...|.+.|.++.|..++..+..        +..++..+.+.++++.|...+.+.  .+..+
T Consensus         2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~--~~~~~   71 (336)
T d1b89a_           2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA--NSTRT   71 (336)
T ss_dssp             HHHHTTTTTCC----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH--TCHHH
T ss_pred             CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC--------HHHHHHHHHHHCCHHHHHHHHHHC--CCHHH
T ss_conf             45699987589857899999999878779999999986789--------999999997031599999999880--88999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999966992899999999998899988999999999971405488499999999980998881059999999994
Q 004632          467 WNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAK  546 (741)
Q Consensus       467 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  546 (741)
                      |..+...+.+.....-+     .+...+...++.....++..+...|.++....+++..... -..+...++.++.+|++
T Consensus        72 ~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          72 WKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH
T ss_conf             99999999727287899-----9999875357887899999998769859999999999757-74446799999999998


Q ss_pred             CCCHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             3999999999983499-----------88778999999999629989999999999986999887899999999842099
Q 004632          547 CGDLQTAQRVFDSMSE-----------RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGS  615 (741)
Q Consensus       547 ~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  615 (741)
                      .+ .++..+.+.....           .....|..++..|.+.|+++.|..++-.     ..++.......+..+.+..+
T Consensus       146 ~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N  219 (336)
T d1b89a_         146 FK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVAN  219 (336)
T ss_dssp             TC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSS
T ss_pred             HC-HHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHHHHHCCCC
T ss_conf             69-4999999986023599999999988748749999999855879999999997-----65445669999999972478


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf             89899999999982998894079899999982399388999898299999988999999999741999999999999861
Q 004632          616 VEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSV  695 (741)
Q Consensus       616 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  695 (741)
                      .+...++.....+.    .+.....++......-+..+..+.+++...-|-...|..-+                     
T Consensus       220 ~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v---------------------  274 (336)
T d1b89a_         220 VELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSV---------------------  274 (336)
T ss_dssp             THHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHC----CHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---------------------
T ss_conf             69999999999975----99999999998565799899999998538807799999999---------------------


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             5999951699999999503991789999999
Q 004632          696 TGTNDNGYYTLLSNIYAEEGNWDEFGKVRSI  726 (741)
Q Consensus       696 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  726 (741)
                      ...++..+...|..+|...++++.-.+..+.
T Consensus       275 ~~~n~~~vn~al~~lyie~~d~~~l~~~i~~  305 (336)
T d1b89a_         275 QNHNNKSVNESLNNLFITEEDYQALRTSIDA  305 (336)
T ss_dssp             HTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9818099999999998671246789999987

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.016  Score=27.50  Aligned_cols=71  Identities=15%  Similarity=0.033  Sum_probs=33.6

Q ss_pred             CCCHHHHHHHHHHHCCC---HHHHHHHHHHC--CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             94079899999982399---38899989829--99999-88999999999741999999999999861599995169
Q 004632          634 DLQHYACMVDLLSRSGD---IEGAFKMIHSM--PFPAN-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYY  704 (741)
Q Consensus       634 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  704 (741)
                      +..+--.++.++.+...   .++++.++++.  ..+.+ ...+..+.-++.+.|++++|...++++++.+|++..+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             81019999999982796889999999999998549505999999999999987329999999999982399849999

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.70  E-value=0.03  Score=25.93  Aligned_cols=48  Identities=10%  Similarity=-0.120  Sum_probs=18.0

Q ss_pred             CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf             99999999999861599995169999999950----399178999999998679
Q 004632          682 RIDVMKTIEKELSVTGTNDNGYYTLLSNIYAE----EGNWDEFGKVRSIMEVTG  731 (741)
Q Consensus       682 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  731 (741)
                      +.++|..+++++.+.+  ++.....|+.+|..    ..|.++|..++++..+.|
T Consensus        74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             3578888875000257--406778999999829846778999999999999878

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.49  E-value=0.068  Score=23.78  Aligned_cols=141  Identities=10%  Similarity=0.061  Sum_probs=78.5

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             99629989999999999986999887899999999842099898999999999829988940798999999823993889
Q 004632          575 YGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGA  654 (741)
Q Consensus       575 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  654 (741)
                      +...|..++..+++.+....   .+..-|+.++--....-+-+...++++.+-+   ..|.          ..+++....
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDl----------s~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HCCC----------HHHHCHHHH
T ss_conf             98742488679999998466---7755124454524300026899999998763---4085----------243267899


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9989829999998899999999974199999999999986159999516999999995039917899999999867995
Q 004632          655 FKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK  733 (741)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  733 (741)
                      ...+-.+.  .+.......+..+..+|.-+.-.++++.+.+....++.++.-++.+|-+.|+..++.+++.+.-++|++
T Consensus        76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHC--CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             99998836--218999999999998260878999999987537998799999999998852244489999999997599

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.13  Score=22.15  Aligned_cols=47  Identities=9%  Similarity=-0.048  Sum_probs=19.1

Q ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             9741999999999999861599995169999999950399178999999
Q 004632          677 CRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS  725 (741)
Q Consensus       677 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  725 (741)
                      +...|....|...+..+....  ++.-...++....+.|.++.|+....
T Consensus       391 L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~  437 (450)
T d1qsaa1         391 LMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI  437 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             998699469999999998679--99999999999998798469999999