Citrus Sinensis ID: 004636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740
MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLFESM
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEcccccccEEEEEEEEcccccccccccccccHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEccccccEEEEEEEEEcccccccccccccccccccccccccccccEEEEcccHHcHHHHHHHHHHcccEEEEEccHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccccEEEcccccHHHHHHHHHHHcccccccccc
cccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEccccccccEEEccccccHHccccccEEEEccccccccccccccccccccHHHHHHHHHHHHccccccccHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEEccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEEccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHcc
mescnciepqwpadELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECalwmptrtglELQLSYTlrqqnpvgytvpiqlpvinqvfssnhavkispncpvarlrplagkympgevVAVRVPllhlsnfqindwpelsTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLlqeteltpeqRLMVETILKSSNLLATLINDVldlsrledgslqlqiGTFNLHAVFREVLNLIKPIASVKKLLVALNlapdlpeyavgdEKRLMQTLLNVVGNAVkftkegnisITGFVakseslrdsrapeffpvpienhFYLRVQvkdsgsgispqdipnLFTKFAQNQAIALRnssgsglgLAICKRFVNLMEGHiwieseglgkgctAIFIVKlgipehsndsnlsfipkmpvhgqtnfpglkvlvmdengvsrsVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDvcvpgidgyEVAVHIHDKFTRRHERPLIVAltgstdnltkdncmrvgmdgvilkpVSLEKMRSVLSDLLEHRVLFESM
mescnciePQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKaaeldremglirtqeetgrhvrmltheirstldrhtiLKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNavkftkegnisitgfvakseslrdsRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALrnssgsglGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDkftrrherplivaltgstdnltkdnCMRVGMDGVILKPVSLEKMRSVLSDllehrvlfesm
MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWhvhelelvevvADQVAVALSHAAILEESMRARDLLMQQNIALDSarreaetairarNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLFESM
****NCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALD******ETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKS*******APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVL****
***CNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETE**PEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAK***********FFPVPIENHFYLRVQVKDSG********************************LAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL****************************KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLF***
MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLFESM
**SCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSE*****RAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEH*****************TNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLF***
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLFESM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query740 2.2.26 [Sep-21-2011]
Q9M7M1738 Ethylene receptor OS=Prun N/A no 0.995 0.998 0.889 0.0
O81122741 Ethylene receptor OS=Malu N/A no 1.0 0.998 0.879 0.0
Q9XH57741 Ethylene receptor 2 OS=Pe N/A no 1.0 0.998 0.867 0.0
Q9ZWL6738 Ethylene receptor OS=Pass N/A no 0.994 0.997 0.878 0.0
Q9XH58740 Ethylene receptor 1 OS=Pe N/A no 0.998 0.998 0.840 0.0
Q41342754 Ethylene receptor 1 OS=So N/A no 0.997 0.978 0.855 0.0
O82436740 Ethylene receptor 1 OS=Cu N/A no 0.997 0.997 0.843 0.0
P49333738 Ethylene receptor 1 OS=Ar yes no 0.994 0.997 0.842 0.0
O49230735 Ethylene receptor 1 OS=Br N/A no 0.990 0.997 0.842 0.0
Q9SSY6740 Ethylene receptor 1 OS=Cu N/A no 0.997 0.997 0.840 0.0
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function desciption
 Score = 1356 bits (3509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/741 (88%), Positives = 699/741 (94%), Gaps = 4/741 (0%)

Query: 1   MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60
           ME+CNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA
Sbjct: 1   MEACNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60

Query: 61  FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120
           FIVLCGATHLINLWTF+MHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL
Sbjct: 61  FIVLCGATHLINLWTFSMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180
           FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA
Sbjct: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180

Query: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG 240
           LWMPTRTGLELQLSYTLRQQNPVGYTVPI LPVINQVFSSN A+KISPN PVAR+RPLAG
Sbjct: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRALKISPNSPVARMRPLAG 240

Query: 241 KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300
           K+MPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA
Sbjct: 241 KHMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300

Query: 301 DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH 360
           DQVAVALSHAAILEESMRARDLLM+QNIALD ARREAETAIRARNDFLAVMNHEMRTPMH
Sbjct: 301 DQVAVALSHAAILEESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420
           AIIALSSLLQETELTPEQRLMVETILKSS+LLATLINDVLDLSRLEDGSLQL+I TFNLH
Sbjct: 361 AIIALSSLLQETELTPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLH 420

Query: 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480
           +VFREV NLIKP+ASVKKL V+LNLA DLP  AVGDEKRLMQ +LNVVGNAVKF+KEG+I
Sbjct: 421 SVFREVHNLIKPVASVKKLSVSLNLAADLPVQAVGDEKRLMQIVLNVVGNAVKFSKEGSI 480

Query: 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI 540
           SIT FVAKSESLRD RAPEFFP   +NHFYLRVQVKDSGSGI+PQDIP LFTKFAQ Q++
Sbjct: 481 SITAFVAKSESLRDFRAPEFFPAQSDNHFYLRVQVKDSGSGINPQDIPKLFTKFAQTQSL 540

Query: 541 ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP 600
           A RNS GSGLGLAICKRFVNLMEGHIWIESEG GKGCTAIFIVKLG  E SN+S L F+ 
Sbjct: 541 ATRNSGGSGLGLAICKRFVNLMEGHIWIESEGPGKGCTAIFIVKLGFAERSNESKLPFLT 600

Query: 601 KMPV-HGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVV 659
           K+   H QTNFPGLKVLVMD+NG   SVTKGLL+HLGCDV TVSS++E   V+S EH+VV
Sbjct: 601 KVQANHVQTNFPGLKVLVMDDNG---SVTKGLLVHLGCDVTTVSSIDEFLHVISQEHKVV 657

Query: 660 FMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVS 719
           FMDVC+PGIDGYE+AV IH+KFT+RHERP++VALTG+ D +TK+NCMRVGMDGVILKPVS
Sbjct: 658 FMDVCMPGIDGYELAVRIHEKFTKRHERPVLVALTGNIDKMTKENCMRVGMDGVILKPVS 717

Query: 720 LEKMRSVLSDLLEHRVLFESM 740
           ++KMRSVLS+LLEHRVLFE+M
Sbjct: 718 VDKMRSVLSELLEHRVLFEAM 738
May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway.
Prunus persica (taxid: 3760)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWL6|ETR1_PASED Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|O49230|ETR1_BRAOL Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query740
283520942740 ethylene response 1 [Citrus sinensis] gi 1.0 1.0 0.997 0.0
227072259740 ethylene receptor [Dimocarpus longan] 1.0 1.0 0.920 0.0
7407123739 ethylene receptor [Mangifera indica] 0.998 1.0 0.914 0.0
121488659741 ethylene receptor [Prunus domestica subs 1.0 0.998 0.889 0.0
18252319741 putative ethylene receptor [Pyrus commun 1.0 0.998 0.883 0.0
451805013740 ethylene receptor [Paeonia lactiflora] 0.998 0.998 0.883 0.0
18252351741 putative ethylene receptor [Pyrus commun 1.0 0.998 0.882 0.0
224134496737 ethylene receptor 4 [Populus trichocarpa 0.995 1.0 0.886 0.0
156467289741 putative ethylene receptor [Prunus salic 1.0 0.998 0.885 0.0
18252341741 putative ethylene receptor [Pyrus commun 1.0 0.998 0.883 0.0
>gi|283520942|gb|ADB25213.1| ethylene response 1 [Citrus sinensis] gi|283520950|gb|ADB25217.1| ethylene response 1 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1521 bits (3937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 738/740 (99%), Positives = 740/740 (100%)

Query: 1   MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60
           MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA
Sbjct: 1   MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60

Query: 61  FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120
           FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL
Sbjct: 61  FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180
           FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA
Sbjct: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180

Query: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG 240
           LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG
Sbjct: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG 240

Query: 241 KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300
           KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA
Sbjct: 241 KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300

Query: 301 DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH 360
           DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH
Sbjct: 301 DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420
           AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH
Sbjct: 361 AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420

Query: 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480
           AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI
Sbjct: 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480

Query: 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI 540
           SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQV+DSGSGISPQDIPNLFTKFAQNQAI
Sbjct: 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAI 540

Query: 541 ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP 600
           ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP
Sbjct: 541 ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP 600

Query: 601 KMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVF 660
           KMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECF+VVSHEHQVVF
Sbjct: 601 KMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFQVVSHEHQVVF 660

Query: 661 MDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSL 720
           MDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSL
Sbjct: 661 MDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSL 720

Query: 721 EKMRSVLSDLLEHRVLFESM 740
           EKMRSVLSDLLEHRVLFESM
Sbjct: 721 EKMRSVLSDLLEHRVLFESM 740

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|227072259|gb|ACL81480.3| ethylene receptor [Dimocarpus longan] Back     alignment and taxonomy information
>gi|7407123|gb|AAF61919.1|AF227742_1 ethylene receptor [Mangifera indica] Back     alignment and taxonomy information
>gi|121488659|emb|CAI64505.1| ethylene receptor [Prunus domestica subsp. insititia] Back     alignment and taxonomy information
>gi|18252319|gb|AAL66191.1|AF386509_1 putative ethylene receptor [Pyrus communis] Back     alignment and taxonomy information
>gi|451805013|gb|AFS33091.2| ethylene receptor [Paeonia lactiflora] Back     alignment and taxonomy information
>gi|18252351|gb|AAL66207.1|AF386525_1 putative ethylene receptor [Pyrus communis] Back     alignment and taxonomy information
>gi|224134496|ref|XP_002327419.1| ethylene receptor 4 [Populus trichocarpa] gi|222835973|gb|EEE74394.1| ethylene receptor 4 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|156467289|gb|ABU68266.1| putative ethylene receptor [Prunus salicina] Back     alignment and taxonomy information
>gi|18252341|gb|AAL66202.1|AF386520_1 putative ethylene receptor [Pyrus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query740
UNIPROTKB|Q41342754 ETR1 "Ethylene receptor 1" [So 0.997 0.978 0.827 0.0
TAIR|locus:2201552738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.994 0.997 0.811 0.0
UNIPROTKB|Q41341635 Never-ripe "Ethylene receptor" 0.817 0.952 0.696 2.1e-219
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 0.821 0.991 0.684 3.3e-214
TAIR|locus:2084968766 EIN4 "ETHYLENE INSENSITIVE 4" 0.968 0.936 0.374 3.8e-117
TAIR|locus:2086208773 ETR2 "ethylene response 2" [Ar 0.955 0.914 0.380 1e-114
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.766 0.879 0.342 2e-79
TIGR_CMR|GSU_0718589 GSU_0718 "sensory box histidin 0.508 0.638 0.313 5.3e-46
TIGR_CMR|GSU_2314 1025 GSU_2314 "sensory box histidin 0.501 0.361 0.319 6.3e-42
DICTYBASE|DDB_G02778871213 dhkK "histidine kinase K" [Dic 0.558 0.340 0.275 3.5e-41
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
 Score = 3108 (1099.1 bits), Expect = 0., P = 0.
 Identities = 613/741 (82%), Positives = 660/741 (89%)

Query:     1 MESCNCI-EPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFG 59
             +ESCNCI +PQ PAD+LLMKYQYISDFFIALAYFSIP+ELIYFVKKSAVFPYRWVLVQFG
Sbjct:    15 VESCNCIIDPQLPADDLLMKYQYISDFFIALAYFSIPVELIYFVKKSAVFPYRWVLVQFG 74

Query:    60 AFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRE 119
             AFIVLCGATHLINLWTFNMH+R VAIVMTT K LTA+VSC TALMLVHIIPDLLSVKTRE
Sbjct:    75 AFIVLCGATHLINLWTFNMHTRNVAIVMTTPKALTALVSCITALMLVHIIPDLLSVKTRE 134

Query:   120 LFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEEC 179
             LFLK KAA+LDREMG+IRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEEC
Sbjct:   135 LFLKKKAAQLDREMGIIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEEC 194

Query:   180 ALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLA 239
             ALWMPTRTGLELQLSYTLR QNPVG TVPIQLPVINQVF +NH VKISPN PVARLRP A
Sbjct:   195 ALWMPTRTGLELQLSYTLRHQNPVGLTVPIQLPVINQVFGTNHVVKISPNSPVARLRP-A 253

Query:   240 GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWXXXXXXXXXXX 299
             GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQW           
Sbjct:   254 GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVV 313

Query:   300 ADQVAVALSHAAILEESMRARDLLMQQNIALDSXXXXXXXXXXXXNDFLAVMNHEMRTPM 359
             ADQVAVALSHAAILEESMRARDLLM+QN+ALD             NDFLAVMNHEMRTPM
Sbjct:   314 ADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPM 373

Query:   360 HAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419
             HAIIALSSLLQET+LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQL IGTFNL
Sbjct:   374 HAIIALSSLLQETDLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNL 433

Query:   420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN 479
             HA+FREV +LIKPIASVKKL V L+L+ DLPEY +GDEKRLMQ LLNVVGNAVKF+KEGN
Sbjct:   434 HALFREVHSLIKPIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGN 493

Query:   480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQA 539
             +SI+ FVAKS+SLRD RAPEFF VP ENHFYLRVQ+KD+G GI+PQDIPNLF+KF Q+QA
Sbjct:   494 VSISAFVAKSDSLRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQA 553

Query:   540 IALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFI 599
             +A  NS G+GLGLAICKRFVNLMEGHIWIESEGLGKG TAIFI+KLGIP  +N+S L F+
Sbjct:   554 LATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFIIKLGIPGRANESKLPFV 613

Query:   600 PKMPV-HGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQV 658
              K+P  H Q +F GLKVLVMDENGVSR VTKGLL HLGCDV TV S +EC RVV+HEH+V
Sbjct:   614 TKLPANHTQMSFQGLKVLVMDENGVSRMVTKGLLTHLGCDVTTVGSRDECLRVVTHEHKV 673

Query:   659 VFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPV 718
             V MDV + GID YEVAV IH++F +RH RPLIVALTG+TD +TK+NCMRVGMDGVILKPV
Sbjct:   674 VIMDVSMQGIDCYEVAVVIHERFGKRHGRPLIVALTGNTDRVTKENCMRVGMDGVILKPV 733

Query:   719 SLEKMRSVLSDLLEHRVLFES 739
             S+ KMRSVLS+LLEH V+ ES
Sbjct:   734 SVYKMRSVLSELLEHGVVLES 754
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0718 GSU_0718 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2314 GSU_2314 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277887 dhkK "histidine kinase K" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XH57ETR2_PELHO2, ., 7, ., 1, 3, ., 30.86771.00.9986N/Ano
O48929ETR1_TOBAC2, ., 7, ., 1, 3, ., 30.84120.99320.9959N/Ano
Q9XH58ETR1_PELHO2, ., 7, ., 1, 3, ., 30.84050.99860.9986N/Ano
Q38846ERS1_ARATH2, ., 7, ., 1, 3, ., 30.71050.82160.9918nono
Q9M7M1ETR1_PRUPE2, ., 7, ., 1, 3, ., 30.88930.99590.9986N/Ano
P49333ETR1_ARATH2, ., 7, ., 1, 3, ., 30.84230.99450.9972yesno
O49187ETR2_SOLLC2, ., 7, ., 1, 3, ., 30.80570.98510.9904N/Ano
Q41342ETR1_SOLLC2, ., 7, ., 1, 3, ., 30.85560.99720.9787N/Ano
O81122ETR1_MALDO2, ., 7, ., 1, 3, ., 30.87981.00.9986N/Ano
Q9ZWL6ETR1_PASED2, ., 7, ., 1, 3, ., 30.87820.99450.9972N/Ano
O49230ETR1_BRAOL2, ., 7, ., 1, 3, ., 30.84230.99050.9972N/Ano
O82436ETR1_CUCMN2, ., 7, ., 1, 3, ., 30.84320.99720.9972N/Ano
Q9SSY6ETR1_CUCSA2, ., 7, ., 1, 3, ., 30.84050.99720.9972N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.998
3rd Layer2.7.13.30.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query740
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 1e-62
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 1e-56
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 7e-56
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 8e-51
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 1e-43
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 3e-38
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 8e-37
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 7e-35
TIGR02966333 TIGR02966, phoR_proteo, phosphate regulon sensor k 7e-30
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 2e-27
COG5002459 COG5002, VicK, Signal transduction histidine kinas 7e-26
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 2e-25
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 1e-24
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 1e-22
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 6e-20
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 2e-19
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 8e-19
COG4251750 COG4251, COG4251, Bacteriophytochrome (light-regul 2e-18
PRK10618894 PRK10618, PRK10618, phosphotransfer intermediate p 4e-18
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 7e-17
cd00156113 cd00156, REC, Signal receiver domain; originally t 7e-17
PRK11006430 PRK11006, phoR, phosphate regulon sensor protein; 3e-16
PRK10490895 PRK10490, PRK10490, sensor protein KdpD; Provision 5e-16
PRK09303380 PRK09303, PRK09303, adaptive-response sensory kina 6e-16
pfam01590143 pfam01590, GAF, GAF domain 7e-16
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 5e-15
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 9e-15
PRK10549466 PRK10549, PRK10549, signal transduction histidine- 4e-14
pfam00072111 pfam00072, Response_reg, Response regulator receiv 8e-14
PRK10364457 PRK10364, PRK10364, sensor protein ZraS; Provision 2e-13
COG0784130 COG0784, CheY, FOG: CheY-like receiver [Signal tra 2e-13
PRK09835482 PRK09835, PRK09835, sensor kinase CusS; Provisiona 1e-12
smart00065149 smart00065, GAF, Domain present in phytochromes an 1e-09
COG3852363 COG3852, NtrB, Signal transduction histidine kinas 2e-09
COG4192673 COG4192, COG4192, Signal transduction histidine ki 5e-09
PRK10604433 PRK10604, PRK10604, sensor protein RstB; Provision 5e-09
PRK09467435 PRK09467, envZ, osmolarity sensor protein; Provisi 6e-09
CHL00148 240 CHL00148, orf27, Ycf27; Reviewed 8e-09
PRK09470461 PRK09470, cpxA, two-component sensor protein; Prov 6e-08
COG4191603 COG4191, COG4191, Signal transduction histidine ki 1e-07
COG2204 464 COG2204, AtoC, Response regulator containing CheY- 5e-07
COG3437 360 COG3437, COG3437, Response regulator containing a 2e-06
TIGR02916679 TIGR02916, PEP_his_kin, putative PEP-CTERM system 7e-06
COG0745 229 COG0745, OmpR, Response regulators consisting of a 2e-05
COG3706 435 COG3706, PleD, Response regulator containing a Che 2e-05
PRK10841924 PRK10841, PRK10841, hybrid sensory kinase in two-c 3e-05
PRK13837828 PRK13837, PRK13837, two-component VirA-like sensor 5e-05
PRK13557540 PRK13557, PRK13557, histidine kinase; Provisional 7e-05
COG2197211 COG2197, CitB, Response regulator containing a Che 1e-04
pfam13492129 pfam13492, GAF_3, GAF domain 2e-04
COG5000712 COG5000, NtrY, Signal transduction histidine kinas 7e-04
PRK11073348 PRK11073, glnL, nitrogen regulation protein NR(II) 0.001
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 0.002
COG3290537 COG3290, CitA, Signal transduction histidine kinas 0.002
COG3707194 COG3707, AmiR, Response regulator with putative an 0.003
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 0.004
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information 
 Score =  226 bits (577), Expect = 1e-62
 Identities = 137/457 (29%), Positives = 226/457 (49%), Gaps = 49/457 (10%)

Query: 289 HVHELELVEVVADQVAVALS-HAAILEESMRAR--------DLLMQQNIALDSARREAET 339
                  ++    QVA  L  H   LE+ +  R        + L  +      AR EAE 
Sbjct: 400 TAAHNLKLQADERQVAQELQEHKESLEQLVAQRTQELAETNERLNAEVKNHAKARAEAEE 459

Query: 340 AIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDV 399
           A RA++ FLA M+HE+RTP++ I+    LL +T LT +Q+  ++ I +S   L  ++ND+
Sbjct: 460 ANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDI 519

Query: 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKR 459
           LD S++E G L +    F+L+A+  +V +L+   A +K + + LN+   LP +  GD  R
Sbjct: 520 LDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPR 579

Query: 460 LMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSG 519
           + Q L+N+VGNA+KFT  G++ +        SL D  +             L  +V+D+G
Sbjct: 580 IRQVLINLVGNAIKFTDRGSVVL------RVSLNDDSS-------------LLFEVEDTG 620

Query: 520 SGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579
            GI+ ++   LF  F   QA   R S G+GLGLAI +R V  M+G + +ESE LG G   
Sbjct: 621 CGIAEEEQATLFDAFT--QADGRRRSGGTGLGLAISQRLVEAMDGELGVESE-LGVGSC- 676

Query: 580 IFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDV 639
            F   L +       + + +  + +  Q      +VL++++N V++ V +G L  LG  V
Sbjct: 677 -FWFTLPLTRGKPAEDSATLTVIDLPPQ------RVLLVEDNEVNQMVAQGFLTRLGHKV 729

Query: 640 MTVSSV---EECFRVVSHEHQ--VVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALT 694
               S     ECF    H+H   +  +D+ +P  DG  +   +   +  ++E   I A +
Sbjct: 730 TLAESGQSALECF----HQHAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFI-AFS 784

Query: 695 GSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731
               N      +  G DG + KPV  E++ ++++ +L
Sbjct: 785 AHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVIL 821

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional Back     alignment and domain information
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain Back     alignment and domain information
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional Back     alignment and domain information
>gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional Back     alignment and domain information
>gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|214376 CHL00148, orf27, Ycf27; Reviewed Back     alignment and domain information
>gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase Back     alignment and domain information
>gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional Back     alignment and domain information
>gnl|CDD|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>gnl|CDD|222174 pfam13492, GAF_3, GAF domain Back     alignment and domain information
>gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|226230 COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 740
PRK11091 779 aerobic respiration control sensor protein ArcB; P 100.0
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK10841924 hybrid sensory kinase in two-component regulatory 100.0
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 100.0
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 100.0
PRK15347 921 two component system sensor kinase SsrA; Provision 100.0
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 100.0
PRK13837828 two-component VirA-like sensor kinase; Provisional 100.0
KOG0519786 consensus Sensory transduction histidine kinase [S 100.0
PRK09959 1197 hybrid sensory histidine kinase in two-component r 100.0
PRK10618894 phosphotransfer intermediate protein in two-compon 100.0
PRK10490895 sensor protein KdpD; Provisional 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
PRK13557540 histidine kinase; Provisional 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
COG4251750 Bacteriophytochrome (light-regulated signal transd 100.0
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
PRK10604433 sensor protein RstB; Provisional 100.0
COG3852363 NtrB Signal transduction histidine kinase, nitroge 100.0
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.98
PRK10815485 sensor protein PhoQ; Provisional 99.98
COG4191603 Signal transduction histidine kinase regulating C4 99.98
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.97
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.97
PRK10755356 sensor protein BasS/PmrB; Provisional 99.97
PRK10364457 sensor protein ZraS; Provisional 99.97
PRK09835482 sensor kinase CusS; Provisional 99.97
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.97
PRK10337449 sensor protein QseC; Provisional 99.97
PRK09470461 cpxA two-component sensor protein; Provisional 99.96
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.96
PRK09467435 envZ osmolarity sensor protein; Provisional 99.96
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.96
PRK11100475 sensory histidine kinase CreC; Provisional 99.96
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.94
PRK11360607 sensory histidine kinase AtoS; Provisional 99.94
COG5000712 NtrY Signal transduction histidine kinase involved 99.94
PRK13560807 hypothetical protein; Provisional 99.93
PRK11644495 sensory histidine kinase UhpB; Provisional 99.92
PRK11086542 sensory histidine kinase DcuS; Provisional 99.9
COG4192673 Signal transduction histidine kinase regulating ph 99.9
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.9
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.89
COG0745 229 OmpR Response regulators consisting of a CheY-like 99.86
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.83
PRK13559361 hypothetical protein; Provisional 99.83
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.8
COG3290537 CitA Signal transduction histidine kinase regulati 99.77
COG2204 464 AtoC Response regulator containing CheY-like recei 99.75
COG4753 475 Response regulator containing CheY-like receiver d 99.74
COG3437 360 Response regulator containing a CheY-like receiver 99.73
COG4566202 TtrR Response regulator [Signal transduction mecha 99.72
PF00072112 Response_reg: Response regulator receiver domain; 99.72
COG4565224 CitB Response regulator of citrate/malate metaboli 99.71
COG2197211 CitB Response regulator containing a CheY-like rec 99.69
COG0784130 CheY FOG: CheY-like receiver [Signal transduction 99.67
PRK10547670 chemotaxis protein CheA; Provisional 99.65
COG3706 435 PleD Response regulator containing a CheY-like rec 99.61
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.6
PRK10046225 dpiA two-component response regulator DpiA; Provis 99.59
PLN03029222 type-a response regulator protein; Provisional 99.58
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.55
PRK10816223 DNA-binding transcriptional regulator PhoP; Provis 99.54
PRK11173 237 two-component response regulator; Provisional 99.53
PRK10529225 DNA-binding transcriptional activator KdpE; Provis 99.53
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.53
PRK10955 232 DNA-binding transcriptional regulator CpxR; Provis 99.52
PRK09836 227 DNA-binding transcriptional activator CusR; Provis 99.52
COG3947 361 Response regulator containing CheY-like receiver a 99.52
PRK10430 239 DNA-binding transcriptional activator DcuR; Provis 99.51
PRK10766221 DNA-binding transcriptional regulator TorR; Provis 99.51
PRK10643222 DNA-binding transcriptional regulator BasR; Provis 99.5
PRK09468 239 ompR osmolarity response regulator; Provisional 99.5
PRK10161229 transcriptional regulator PhoB; Provisional 99.49
PRK10336219 DNA-binding transcriptional regulator QseB; Provis 99.49
PRK10840216 transcriptional regulator RcsB; Provisional 99.49
COG4567182 Response regulator consisting of a CheY-like recei 99.49
TIGR02154226 PhoB phosphate regulon transcriptional regulatory 99.48
PRK13856 241 two-component response regulator VirG; Provisional 99.48
PRK10701 240 DNA-binding transcriptional regulator RstA; Provis 99.48
TIGR02875 262 spore_0_A sporulation transcription factor Spo0A. 99.47
PRK11517223 transcriptional regulatory protein YedW; Provision 99.47
TIGR03787227 marine_sort_RR proteobacterial dedicated sortase s 99.46
PRK09958204 DNA-binding transcriptional activator EvgA; Provis 99.45
PRK11083228 DNA-binding response regulator CreB; Provisional 99.45
TIGR01387218 cztR_silR_copR heavy metal response regulator. Mem 99.44
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.43
PRK14084 246 two-component response regulator; Provisional 99.43
CHL00148 240 orf27 Ycf27; Reviewed 99.43
PRK09483217 response regulator; Provisional 99.42
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.41
PRK10100216 DNA-binding transcriptional regulator CsgD; Provis 99.4
PRK15115 444 response regulator GlrR; Provisional 99.4
PRK10923 469 glnG nitrogen regulation protein NR(I); Provisiona 99.39
PRK11361 457 acetoacetate metabolism regulatory protein AtoC; P 99.39
PRK09935210 transcriptional regulator FimZ; Provisional 99.39
PRK10360196 DNA-binding transcriptional activator UhpA; Provis 99.38
PRK10365 441 transcriptional regulatory protein ZraR; Provision 99.38
PRK09581 457 pleD response regulator PleD; Reviewed 99.38
PRK11697 238 putative two-component response-regulatory protein 99.38
TIGR02915 445 PEP_resp_reg putative PEP-CTERM system response re 99.37
TIGR01818 463 ntrC nitrogen regulation protein NR(I). This model 99.35
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.35
PRK10710 240 DNA-binding transcriptional regulator BaeR; Provis 99.34
PRK11475207 DNA-binding transcriptional activator BglJ; Provis 99.33
PRK15479221 transcriptional regulatory protein TctD; Provision 99.33
PRK12555 337 chemotaxis-specific methylesterase; Provisional 99.33
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.32
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.31
PRK09390202 fixJ response regulator FixJ; Provisional 99.28
PRK00742 354 chemotaxis-specific methylesterase; Provisional 99.26
PRK15411207 rcsA colanic acid capsular biosynthesis activation 99.26
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.25
PRK09581 457 pleD response regulator PleD; Reviewed 99.24
PRK13558 665 bacterio-opsin activator; Provisional 99.24
PRK13435145 response regulator; Provisional 99.24
PRK10610129 chemotaxis regulatory protein CheY; Provisional 99.23
PRK10651216 transcriptional regulator NarL; Provisional 99.23
PRK15369211 two component system sensor kinase SsrB; Provision 99.22
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.21
PRK10403215 transcriptional regulator NarP; Provisional 99.21
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.21
COG2201 350 CheB Chemotaxis response regulator containing a Ch 99.21
COG3707194 AmiR Response regulator with putative antiterminat 99.2
COG0643716 CheA Chemotaxis protein histidine kinase and relat 99.17
COG4585365 Signal transduction histidine kinase [Signal trans 99.17
PRK03660146 anti-sigma F factor; Provisional 99.12
PRK09191261 two-component response regulator; Provisional 99.09
COG3920221 Signal transduction histidine kinase [Signal trans 99.05
COG3275557 LytS Putative regulator of cell autolysis [Signal 99.02
PRK10693 303 response regulator of RpoS; Provisional 99.01
cd00156113 REC Signal receiver domain; originally thought to 99.01
COG2972456 Predicted signal transduction protein with a C-ter 98.9
PRK04069161 serine-protein kinase RsbW; Provisional 98.8
COG3279 244 LytT Response regulator of the LytR/AlgR family [T 98.77
COG4564459 Signal transduction histidine kinase [Signal trans 98.76
PRK15029 755 arginine decarboxylase; Provisional 98.74
PRK15429686 formate hydrogenlyase transcriptional activator Fh 98.71
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 98.65
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 98.61
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.61
PF14501100 HATPase_c_5: GHKL domain 98.4
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 98.36
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 98.29
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.2
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 98.16
COG3706 435 PleD Response regulator containing a CheY-like rec 98.15
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 98.13
TIGR01817534 nifA Nif-specific regulatory protein. This model r 98.09
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 98.06
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 97.97
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 97.81
PRK05022509 anaerobic nitric oxide reductase transcription reg 97.73
PRK15429686 formate hydrogenlyase transcriptional activator Fh 97.72
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 97.54
smart00065149 GAF Domain present in phytochromes and cGMP-specif 97.46
PF06490109 FleQ: Flagellar regulatory protein FleQ; InterPro: 97.44
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 97.09
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 97.02
smart0044855 REC cheY-homologous receiver domain. CheY regulate 96.87
COG3605 756 PtsP Signal transduction protein containing GAF an 96.8
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 96.71
PRK02261137 methylaspartate mutase subunit S; Provisional 96.7
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 96.55
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 95.79
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 95.61
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 95.12
cd02067119 B12-binding B12 binding domain (B12-BD). This doma 94.65
PRK13558665 bacterio-opsin activator; Provisional 94.43
PRK05644 638 gyrB DNA gyrase subunit B; Validated 94.43
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 94.21
TIGR01501134 MthylAspMutase methylaspartate mutase, S subunit. 94.05
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 93.91
COG5381184 Uncharacterized protein conserved in bacteria [Fun 93.78
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 93.53
COG5385214 Uncharacterized protein conserved in bacteria [Fun 93.38
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 93.08
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 92.9
PRK14083 601 HSP90 family protein; Provisional 92.82
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 92.67
PRK05218 613 heat shock protein 90; Provisional 92.48
TIGR03815 322 CpaE_hom_Actino helicase/secretion neighborhood Cp 91.12
PF03709115 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal 90.43
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 89.98
PF10090182 DUF2328: Uncharacterized protein conserved in bact 89.4
COG4999140 Uncharacterized domain of BarA-like signal transdu 88.92
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 88.9
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 87.93
PF02310121 B12-binding: B12 binding domain; InterPro: IPR0061 87.88
cd02069213 methionine_synthase_B12_BD B12 binding domain of m 86.87
cd02070201 corrinoid_protein_B12-BD B12 binding domain of cor 86.77
PRK00208250 thiG thiazole synthase; Reviewed 86.34
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 85.12
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 84.36
PRK09426714 methylmalonyl-CoA mutase; Reviewed 82.54
PRK03958176 tRNA 2'-O-methylase; Reviewed 82.16
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 81.69
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 80.69
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 80.32
TIGR02370197 pyl_corrinoid methyltransferase cognate corrinoid 80.25
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.3e-57  Score=542.20  Aligned_cols=368  Identities=29%  Similarity=0.490  Sum_probs=319.1

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeee
Q 004636          337 AETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGT  416 (740)
Q Consensus       337 ~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~  416 (740)
                      ++++++.+++|++++||||||||++|.|+++++.+...+++++++++.|..+++++..++++++++++++.+...+..++
T Consensus       276 l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~  355 (779)
T PRK11091        276 LEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQP  355 (779)
T ss_pred             HHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeec
Confidence            34445678899999999999999999999999988888899999999999999999999999999999999999999999


Q ss_pred             ecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCC
Q 004636          417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSR  496 (740)
Q Consensus       417 ~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~  496 (740)
                      +++.++++++...+...+..+++.+.++.+++.|..+.+|+.++.||+.||++||+||+++|.|.+.+.....       
T Consensus       356 ~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~-------  428 (779)
T PRK11091        356 IDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEG-------  428 (779)
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccC-------
Confidence            9999999999999999999999999999888888778899999999999999999999999988887654311       


Q ss_pred             CCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccc-cccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCc
Q 004636          497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ-AIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGK  575 (740)
Q Consensus       497 ~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~-~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~  575 (740)
                                  ..+.|+|.|+|+|||++++++||+|||+++ ....+..+|+||||+|||++|+.|||+|+++|. +|+
T Consensus       429 ------------~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~  495 (779)
T PRK11091        429 ------------DMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGK  495 (779)
T ss_pred             ------------CEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCC
Confidence                        148999999999999999999999999984 434445789999999999999999999999998 688


Q ss_pred             eEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-C
Q 004636          576 GCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-H  654 (740)
Q Consensus       576 G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~  654 (740)
                      ||+|++.+|++.+.......       +........+.+||||||++.++..+..+|+..||.+..+.|+.+|++.+. .
T Consensus       496 Gt~f~i~lP~~~~~~~~~~~-------~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~  568 (779)
T PRK11091        496 GSCFTLTIHAPAVAEEVEDA-------FDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD  568 (779)
T ss_pred             eEEEEEEEeccccccccccc-------cccccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC
Confidence            99999999987654322111       011112235679999999999999999999999999999999999999885 5


Q ss_pred             CCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636          655 EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH  733 (740)
Q Consensus       655 ~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~  733 (740)
                      .||+||+|+.||+|||++++++||+... ....+|||++|++... ...+++++|+++|+.||++.++|...+++++..
T Consensus       569 ~~Dlvl~D~~mp~~~G~e~~~~ir~~~~-~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  645 (779)
T PRK11091        569 EYDLVLLDIQLPDMTGLDIARELRERYP-REDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT  645 (779)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhccc-cCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence            7899999999999999999999975421 1222578889988764 467899999999999999999999999998754

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG4566 TtrR Response regulator [Signal transduction mechanisms] Back     alignment and domain information
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10046 dpiA two-component response regulator DpiA; Provisional Back     alignment and domain information
>PLN03029 type-a response regulator protein; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional Back     alignment and domain information
>PRK11173 two-component response regulator; Provisional Back     alignment and domain information
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional Back     alignment and domain information
>PRK09836 DNA-binding transcriptional activator CusR; Provisional Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional Back     alignment and domain information
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional Back     alignment and domain information
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional Back     alignment and domain information
>PRK09468 ompR osmolarity response regulator; Provisional Back     alignment and domain information
>PRK10161 transcriptional regulator PhoB; Provisional Back     alignment and domain information
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information
>PRK10840 transcriptional regulator RcsB; Provisional Back     alignment and domain information
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB Back     alignment and domain information
>PRK13856 two-component response regulator VirG; Provisional Back     alignment and domain information
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional Back     alignment and domain information
>TIGR02875 spore_0_A sporulation transcription factor Spo0A Back     alignment and domain information
>PRK11517 transcriptional regulatory protein YedW; Provisional Back     alignment and domain information
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator Back     alignment and domain information
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional Back     alignment and domain information
>PRK11083 DNA-binding response regulator CreB; Provisional Back     alignment and domain information
>TIGR01387 cztR_silR_copR heavy metal response regulator Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK14084 two-component response regulator; Provisional Back     alignment and domain information
>CHL00148 orf27 Ycf27; Reviewed Back     alignment and domain information
>PRK09483 response regulator; Provisional Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>PRK09935 transcriptional regulator FimZ; Provisional Back     alignment and domain information
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK11697 putative two-component response-regulatory protein YehT; Provisional Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional Back     alignment and domain information
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional Back     alignment and domain information
>PRK15479 transcriptional regulatory protein TctD; Provisional Back     alignment and domain information
>PRK12555 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK09390 fixJ response regulator FixJ; Provisional Back     alignment and domain information
>PRK00742 chemotaxis-specific methylesterase; Provisional Back     alignment and domain information
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK13435 response regulator; Provisional Back     alignment and domain information
>PRK10610 chemotaxis regulatory protein CheY; Provisional Back     alignment and domain information
>PRK10651 transcriptional regulator NarL; Provisional Back     alignment and domain information
>PRK15369 two component system sensor kinase SsrB; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK10403 transcriptional regulator NarP; Provisional Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK09191 two-component response regulator; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15029 arginine decarboxylase; Provisional Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>smart00448 REC cheY-homologous receiver domain Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>cd02067 B12-binding B12 binding domain (B12-BD) Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein Back     alignment and domain information
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms] Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) Back     alignment and domain information
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase Back     alignment and domain information
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins Back     alignment and domain information
>PRK00208 thiG thiazole synthase; Reviewed Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PRK09426 methylmalonyl-CoA mutase; Reviewed Back     alignment and domain information
>PRK03958 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query740
1dcf_A136 Crystal Structure Of The Receiver Domain Of The Eth 4e-52
3dge_A258 Structure Of A Histidine Kinase-response Regulator 7e-18
2c2a_A258 Structure Of The Entire Cytoplasmic Portion Of A Se 9e-18
4ew8_A268 Crystal Structure Of A C-Terminal Part Of Tyrosine 3e-14
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 8e-11
3d36_A244 How To Switch Off A Histidine Kinase: Crystal Struc 6e-09
3a0r_A349 Crystal Structure Of Histidine Kinase Thka (Tm1359) 1e-08
1oxb_B134 Complex Between Ypd1 And Sln1 Response Regulator Do 1e-07
4euk_A153 Crystal Structure Length = 153 1e-07
2r25_B133 Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef 3e-07
3a0t_A152 Catalytic Domain Of Histidine Kinase Thka (Tm1359) 6e-06
2ayz_A133 Solution Structure Of The E.Coli Rcsc C-Terminus (R 2e-05
2ayx_A254 Solution Structure Of The E.Coli Rcsc C-Terminus (R 4e-05
3mm4_A206 Crystal Structure Of The Receiver Domain Of The His 8e-05
1zy2_A150 Crystal Structure Of The Phosphorylated Receiver Do 7e-04
1bxd_A161 Nmr Structure Of The Histidine Kinase Domain Of The 9e-04
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene Receptor Of Arabidopsis Thaliana Length = 136 Back     alignment and structure 
Iteration: 1

 Score =  202 bits (515), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 95/134 (70%), Positives = 117/134 (87%), Gaps = 1/134 (0%)
Query: 608 TNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPG 667
           +NF GLKVLVMDENGVSR VTKGLL+HLGC+V TVSS EEC RVVSHEH+VVFMDVC+PG
Sbjct: 3   SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPG 62
Query: 668 IDGYEVAVHIHDKFTR-RHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSV 726
           ++ Y++A+ IH+KFT+ RH+RPL+VAL+G+TD  TK+ CM  G+DGV+LKPVSL+ +R V
Sbjct: 63  VENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122
Query: 727 LSDLLEHRVLFESM 740
           LSDLLE RVL+E M
Sbjct: 123 LSDLLEPRVLYEGM 136
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 Back     alignment and structure
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Back     alignment and structure
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase (Divl) From Caulobacter Crescentus Cb15 At 2.50 A Resolution Length = 268 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of Geobacillus Stearothermophilus Kinb With The Inhibitor Sda Length = 244 Back     alignment and structure
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 Back     alignment and structure
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In Space Group P2(1)2(1)2(1) Length = 134 Back     alignment and structure
>pdb|4EUK|A Chain A, Crystal Structure Length = 153 Back     alignment and structure
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3- Length = 133 Back     alignment and structure
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In Complex With Adp And Mg Ion (Trigonal) Length = 152 Back     alignment and structure
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 817-949) Containing Phosphoreceiver Domain Length = 133 Back     alignment and structure
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 700-949) Containing Linker Region And Phosphoreceiver Domain Length = 254 Back     alignment and structure
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine Kinase Cki1 From Arabidopsis Thaliana Length = 206 Back     alignment and structure
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of The Transcription Regulator Ntrc1 From Aquifex Aeolicus Length = 150 Back     alignment and structure
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E. Coli Osmosensor Envz Length = 161 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query740
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 5e-76
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 4e-68
1dcf_A136 ETR1 protein; beta-alpha five sandwich, transferas 1e-48
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 6e-34
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 8e-31
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 8e-30
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 2e-29
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 3e-28
2ayx_A254 Sensor kinase protein RCSC; two independent struct 9e-28
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 3e-27
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 1e-25
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 5e-25
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 1e-22
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 1e-22
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 2e-21
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 4e-20
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 5e-20
3p01_A184 Two-component response regulator; PSI-2, midwest c 8e-20
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 2e-18
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 5e-18
3m6m_D143 Sensory/regulatory protein RPFC; RPFF, REC, enoyl- 5e-17
3i42_A127 Response regulator receiver domain protein (CHEY- 3e-16
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 6e-16
3luf_A259 Two-component system response regulator/ggdef doma 7e-16
3luf_A 259 Two-component system response regulator/ggdef doma 1e-11
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 1e-15
1mb3_A124 Cell division response regulator DIVK; signal tran 6e-15
3c97_A140 Signal transduction histidine kinase; structural g 8e-15
3mm4_A206 Histidine kinase homolog; receiver domain, CKI1, c 8e-15
2r25_B133 Osmosensing histidine protein kinase SLN1; alpha5- 3e-14
1w25_A 459 Stalked-cell differentiation controlling protein; 3e-14
1w25_A 459 Stalked-cell differentiation controlling protein; 5e-07
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 3e-12
3ilh_A146 Two component response regulator; NYSGXRC, PSI-II, 3e-11
3eq2_A 394 Probable two-component response regulator; adaptor 5e-11
3bre_A 358 Probable two-component response regulator; protein 2e-10
4fmt_A228 CHPT protein; A phosphotransfer protein, A two-com 2e-10
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 4e-10
3hdg_A137 Uncharacterized protein; two-component sensor acti 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 2e-09
3h5i_A140 Response regulator/sensory box protein/ggdef domai 2e-09
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 3e-09
3hdv_A136 Response regulator; PSI-II, structural genomics, P 1e-08
1srr_A124 SPO0F, sporulation response regulatory protein; as 2e-08
3cfy_A137 Putative LUXO repressor protein; structural genomi 3e-08
3dzd_A 368 Transcriptional regulator (NTRC family); sigma43 a 3e-08
1yio_A208 Response regulatory protein; transcription regulat 3e-08
2rjn_A154 Response regulator receiver:metal-dependent phosph 4e-08
2qvg_A143 Two component response regulator; NYSGXRC, PSI-2, 6e-08
1ny5_A 387 Transcriptional regulator (NTRC family); AAA+ ATPa 6e-08
1s8n_A205 Putative antiterminator; RV1626, structural genomi 1e-07
3cg0_A140 Response regulator receiver modulated diguanylate 1e-07
4dad_A146 Putative pilus assembly-related protein; response 3e-07
2qyb_A181 Membrane protein, putative; GAF domain, domain of 3e-07
2rdm_A132 Response regulator receiver protein; structural ge 5e-07
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 7e-07
1dc7_A124 NTRC, nitrogen regulation protein; receiver domain 8e-07
1k66_A149 Phytochrome response regulator RCPB; CHEY homologu 1e-06
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 2e-06
3grc_A140 Sensor protein, kinase; protein structure initiati 3e-06
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 4e-06
3jte_A143 Response regulator receiver protein; structural ge 5e-06
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatas 8e-06
2qxy_A142 Response regulator; regulation of transcription, N 9e-06
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 9e-06
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 1e-05
3rqi_A184 Response regulator protein; structural genomics, s 1e-05
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 2e-05
1qo0_D196 AMIR; binding protein, gene regulator, receptor; 2 2e-05
3crn_A132 Response regulator receiver domain protein, CHEY-; 2e-05
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 3e-05
1jbe_A128 Chemotaxis protein CHEY; signaling protein; 1.08A 4e-05
3heb_A152 Response regulator receiver domain protein (CHEY); 4e-05
3n0r_A286 Response regulator; sigma factor, receiver, two-co 5e-05
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 7e-05
3r0j_A 250 Possible two component system response transcript 9e-05
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 1e-04
1i3c_A149 Response regulator RCP1; phytochrome, signaling pr 2e-04
3snk_A135 Response regulator CHEY-like protein; P-loop conta 2e-04
1tmy_A120 CHEY protein, TMY; chemotaxis, phosphoryl transfer 3e-04
1p6q_A129 CHEY2; chemotaxis, signal transduction, response r 5e-04
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  245 bits (627), Expect = 5e-76
 Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 30/258 (11%)

Query: 329 ALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-ELTPEQRLMVETILK 387
           AL         A R + DF+  +++E+RTP+  II  S LL+    ++   R  V  +  
Sbjct: 25  ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRA 84

Query: 388 SSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAP 447
           ++  LA  I+DVLD+++++ G + L+I    +  +           A +  + +A+    
Sbjct: 85  AATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEE 144

Query: 448 DLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIEN 507
           D+     GD KRL QTL ++V NA++ T  G     G V    +L   RA          
Sbjct: 145 DVGL-IRGDGKRLAQTLDHLVENALRQTPPG-----GRV----TLSARRALG-------- 186

Query: 508 HFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW 567
              +R+ V D+G G+      ++F +F        R+  G GLGLA+ K  V L  G + 
Sbjct: 187 --EVRLDVSDTGRGVPFHVQAHIFDRFVG------RDRGGPGLGLALVKALVELHGGWVA 238

Query: 568 IESEGLGKGCTAIFIVKL 585
           +ESE  G G T  F   L
Sbjct: 239 LESE-PGNGST--FTCHL 253
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Length = 136 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Length = 143 Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Length = 127 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Back     alignment and structure
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Back     alignment and structure
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Length = 124 Back     alignment and structure
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Length = 140 Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Length = 206 Back     alignment and structure
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Length = 133 Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} Length = 144 Back     alignment and structure
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Length = 146 Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Length = 394 Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Length = 358 Back     alignment and structure
>4fmt_A CHPT protein; A phosphotransfer protein, A two-component signaling pathway structural genomics, joint center for structural genomics; 2.30A {Caulobacter crescentus} Length = 228 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 Back     alignment and structure
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} Length = 136 Back     alignment and structure
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Length = 124 Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Length = 137 Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Length = 368 Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208 Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Length = 154 Back     alignment and structure
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Length = 143 Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Length = 387 Back     alignment and structure
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205 Back     alignment and structure
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Length = 140 Back     alignment and structure
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Length = 146 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Length = 132 Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Length = 153 Back     alignment and structure
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Length = 124 Back     alignment and structure
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Length = 149 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Length = 140 Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Length = 139 Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Length = 143 Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Length = 157 Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Length = 142 Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Length = 151 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Length = 184 Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Length = 126 Back     alignment and structure
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Length = 196 Back     alignment and structure
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Length = 132 Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Length = 155 Back     alignment and structure
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Length = 128 Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} Length = 152 Back     alignment and structure
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Length = 286 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Length = 250 Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Length = 130 Back     alignment and structure
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Length = 149 Back     alignment and structure
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Length = 135 Back     alignment and structure
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Length = 120 Back     alignment and structure
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 740
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 1e-34
d1dcfa_134 c.23.1.2 (A:) Receiver domain of the ethylene rece 1e-29
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 8e-27
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 3e-26
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 6e-25
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 3e-24
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 5e-19
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 3e-18
d2r25b1128 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba 3e-15
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 5e-14
d1peya_119 c.23.1.1 (A:) Sporulation response regulator Spo0F 7e-14
d1u0sy_118 c.23.1.1 (Y:) CheY protein {Thermotoga maritima [T 8e-14
d1zesa1121 c.23.1.1 (A:3-123) PhoB receiver domain {Escherich 9e-14
d2ayxa1133 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C 2e-13
d1dz3a_123 c.23.1.1 (A:) Sporulation response regulator Spo0A 3e-13
d1mb3a_123 c.23.1.1 (A:) Cell division response regulator Div 8e-13
d1jbea_128 c.23.1.1 (A:) CheY protein {Escherichia coli [TaxI 1e-12
d1a04a2138 c.23.1.1 (A:5-142) Nitrate/nitrite response regula 1e-12
d2a9pa1117 c.23.1.1 (A:2-118) DNA-binding response regulator 3e-12
d1p6qa_129 c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti 6e-12
d1mvoa_121 c.23.1.1 (A:) PhoP receiver domain {Bacillus subti 7e-12
d1ys7a2121 c.23.1.1 (A:7-127) Transcriptional regulatory prot 1e-11
d1krwa_123 c.23.1.1 (A:) NTRC receiver domain {Salmonella typ 2e-11
d1a2oa1140 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal 8e-11
d1ny5a1137 c.23.1.1 (A:1-137) Transcriptional activator sigm5 8e-11
d1xhfa1121 c.23.1.1 (A:2-122) Aerobic respiration control pro 1e-10
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 2e-10
d1dbwa_123 c.23.1.1 (A:) Transcriptional regulatory protein F 2e-10
d1qkka_140 c.23.1.1 (A:) Transcriptional regulatory protein D 3e-10
d1zgza1120 c.23.1.1 (A:2-121) TorCAD operon transcriptional r 3e-10
d1zh2a1119 c.23.1.1 (A:2-120) Transcriptional regulatory prot 3e-10
d1w25a1139 c.23.1.1 (A:2-140) Response regulator PleD, receiv 3e-10
d1yioa2128 c.23.1.1 (A:3-130) Response regulatory protein Sty 4e-10
d2pl1a1119 c.23.1.1 (A:1-119) PhoP receiver domain {Escherich 6e-10
d1k66a_149 c.23.1.1 (A:) Response regulator for cyanobacteria 7e-10
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 3e-09
d1i58a_189 d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m 6e-09
d1k68a_140 c.23.1.1 (A:) Response regulator for cyanobacteria 1e-08
d1i3ca_144 c.23.1.1 (A:) Response regulator for cyanobacteria 2e-08
d2b4aa1118 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Ba 3e-08
d1kgsa2122 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotog 6e-08
d1s8na_190 c.23.1.1 (A:) Probable two-component system transc 9e-08
d1qo0d_189 c.23.1.3 (D:) Positive regulator of the amidase op 5e-07
d1p2fa2120 c.23.1.1 (A:1-120) Response regulator DrrB {Thermo 8e-07
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 2e-06
d1w25a2153 c.23.1.1 (A:141-293) Response regulator PleD, rece 2e-06
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 4e-05
d1ixma_179 d.123.1.1 (A:) Sporulation response regulatory pro 8e-04
d2k2na1170 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec 9e-04
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score =  127 bits (320), Expect = 1e-34
 Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGN 470
           Q+     +L  +    +N IK  AS   + V        P  A  D  R+ Q LLN++ N
Sbjct: 1   QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60

Query: 471 AVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530
            VK++K+        V   E                    + + V+D+G GI       +
Sbjct: 61  GVKYSKKDAPDKYVKVILDE----------------KDGGVLIIVEDNGIGIPDHAKDRI 104

Query: 531 FTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585
           F +F +  +       G+GLGLAI K  V L  G IW+ESE +GKG    F V +
Sbjct: 105 FEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGKGSR--FFVWI 156
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Length = 119 Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118 Back     information, alignment and structure
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133 Back     information, alignment and structure
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123 Back     information, alignment and structure
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123 Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Length = 138 Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129 Back     information, alignment and structure
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Length = 121 Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 121 Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Length = 123 Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 140 Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121 Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Length = 123 Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Length = 140 Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 120 Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 139 Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Length = 128 Back     information, alignment and structure
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Length = 119 Back     information, alignment and structure
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149 Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140 Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Length = 144 Back     information, alignment and structure
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Length = 118 Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Length = 122 Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 190 Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Length = 189 Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Length = 120 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153 Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query740
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 100.0
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.96
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.96
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.96
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.94
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.94
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.94
d1dcfa_134 Receiver domain of the ethylene receptor {Thale cr 99.91
d2pl1a1119 PhoP receiver domain {Escherichia coli [TaxId: 562 99.86
d1dbwa_123 Transcriptional regulatory protein FixJ, receiver 99.86
d1zesa1121 PhoB receiver domain {Escherichia coli [TaxId: 562 99.86
d1s8na_190 Probable two-component system transcriptional regu 99.86
d1peya_119 Sporulation response regulator Spo0F {Bacillus sub 99.86
d1qkka_140 Transcriptional regulatory protein DctD, receiver 99.85
d2r25b1128 Response regulator Sin1 {Baker's yeast (Saccharomy 99.85
d1ys7a2121 Transcriptional regulatory protein PrrA, N-termina 99.85
d1mb3a_123 Cell division response regulator DivK {Caulobacter 99.85
d1kgsa2122 PhoB receiver domain {Thermotoga maritima [TaxId: 99.85
d1ny5a1137 Transcriptional activator sigm54 (NtrC1), N-termin 99.84
d1mvoa_121 PhoP receiver domain {Bacillus subtilis [TaxId: 14 99.84
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 99.84
d1zh2a1119 Transcriptional regulatory protein KdpE, N-termina 99.84
d1xhfa1121 Aerobic respiration control protein ArcA, N-termin 99.84
d1w25a1139 Response regulator PleD, receiver domain {Caulobac 99.84
d2ayxa1133 Sensor kinase protein RcsC, C-terminal domain {Esc 99.84
d1jbea_128 CheY protein {Escherichia coli [TaxId: 562]} 99.84
d1zgza1120 TorCAD operon transcriptional regulator TorD, N-te 99.84
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 99.84
d1u0sy_118 CheY protein {Thermotoga maritima [TaxId: 2336]} 99.83
d1i3ca_144 Response regulator for cyanobacterial phytochrome 99.83
d1p6qa_129 CheY protein {Sinorhizobium meliloti, CheY2 [TaxId 99.83
d1k66a_149 Response regulator for cyanobacterial phytochrome 99.83
d1krwa_123 NTRC receiver domain {Salmonella typhimurium [TaxI 99.83
d1w25a2153 Response regulator PleD, receiver domain {Caulobac 99.83
d1k68a_140 Response regulator for cyanobacterial phytochrome 99.83
d1yioa2128 Response regulatory protein StyR, N-terminal domai 99.82
d1dz3a_123 Sporulation response regulator Spo0A {Bacillus ste 99.82
d1p2fa2120 Response regulator DrrB {Thermotoga maritima [TaxI 99.81
d1qo0d_189 Positive regulator of the amidase operon AmiR {Pse 99.75
d1a2oa1140 Methylesterase CheB, N-terminal domain {Salmonella 99.74
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.74
d2b4aa1118 Hypothetical protein BH3024 {Bacillus halodurans [ 99.72
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.69
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.5
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.3
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.27
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.18
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 98.87
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 98.62
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 98.53
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 98.33
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.13
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 98.11
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.06
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 98.05
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 97.94
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 97.2
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 96.66
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 96.15
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 95.16
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 94.14
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 92.16
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 91.74
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 85.28
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 84.89
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 84.33
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 84.33
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.7e-31  Score=237.14  Aligned_cols=155  Identities=30%  Similarity=0.428  Sum_probs=135.4

Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCE----EEEEEEE
Q ss_conf             016210058999999999975354405908999829999952262698999999999998840589990----9999998
Q 004636          411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN----ISITGFV  486 (740)
Q Consensus       411 ~l~~~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~----i~i~~~~  486 (740)
                      +++.+++++.+++++++..++..+..+++.+.++.+.+.|..+.+|+.+|+||+.||++||+|||+.|.    |.+....
T Consensus         1 el~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~   80 (161)
T d2c2aa2           1 QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE   80 (161)
T ss_dssp             CCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE
T ss_pred             CCCCEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf             97047999999999999999999987797899983899987999889999999999999999963607975304677885


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             32543336899987677878924989999851988994884455100334665567888873405899999999819999
Q 004636          487 AKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHI  566 (740)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I  566 (740)
                      .  .                  .++.|+|+|+|+|||+++++++|+||||.+...+++.+|+||||+|||++++.|||+|
T Consensus        81 ~--~------------------~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i  140 (161)
T d2c2aa2          81 K--D------------------GGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRI  140 (161)
T ss_dssp             E--T------------------TEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEE
T ss_pred             C--C------------------CEEEEEEEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             5--9------------------9999999982777798999886398487678887888934579999999999879989


Q ss_pred             EEEEECCCCEEEEEEEEEEC
Q ss_conf             99960499418999999707
Q 004636          567 WIESEGLGKGCTAIFIVKLG  586 (740)
Q Consensus       567 ~v~S~~~g~G~~f~~~l~~~  586 (740)
                      +++|. .|+|++|++++|..
T Consensus       141 ~v~s~-~~~Gt~f~i~lP~~  159 (161)
T d2c2aa2         141 WVESE-VGKGSRFFVWIPKD  159 (161)
T ss_dssp             EEEEE-TTTEEEEEEEEECC
T ss_pred             EEEEC-CCCEEEEEEEEECC
T ss_conf             99964-99906999999854
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Back     information, alignment and structure
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure