Citrus Sinensis ID: 004720
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | 2.2.26 [Sep-21-2011] | |||||||
| Q8IYF3 | 940 | Testis-expressed sequence | yes | no | 0.320 | 0.25 | 0.247 | 7e-09 |
| >sp|Q8IYF3|TEX11_HUMAN Testis-expressed sequence 11 protein OS=Homo sapiens GN=TEX11 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 36/271 (13%)
Query: 416 ELVSDERVLALFVGDAAAKERIA-----MHAVLWNCASILFRSKDYEASAEMFEKSMLYL 470
EL++ E++ +F+ ++ A +H +LW A+ F ++Y + + + S+ +
Sbjct: 388 ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLRFY 447
Query: 471 PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND 529
D E + K R + CYL L +D+A+E + EAE+ +P N+ + F FKI + + +
Sbjct: 448 STD-EMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGN 506
Query: 530 QEGAINQILAMTICL--------DFT------TDFLSLAAHEAVACQALSVAVAALSNLL 575
E A+ I+ + L D T LSLAA A+ VA AL L
Sbjct: 507 SERALQAIITLENILTDEESEDNDLVAERGSPTMLLSLAAQFALENGQQIVAEKALEYLA 566
Query: 576 NFYTSGKPMPTKEVVVLRTIVTILTQETGNESE------VLKYMKRAHARTSEIGANCFF 629
+ + T +LR ++ + + +E + +L + RA + S+ F
Sbjct: 567 QHSEDQEQVLTAVKCLLRFLLPKIAEMPESEDKKKEMDRLLTCLNRAFVKLSQP-----F 621
Query: 630 GTE----EAGRREQNWLAVMSWNFGTNCGKE 656
G E E+ E W +WN C K+
Sbjct: 622 GEEALSLESRANEAQWFRKTAWNLAVQCDKD 652
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Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | ||||||
| 224129338 | 956 | predicted protein [Populus trichocarpa] | 0.983 | 0.754 | 0.686 | 0.0 | |
| 134304938 | 936 | ZIP4/SPO22 [Arabidopsis thaliana] | 0.986 | 0.772 | 0.650 | 0.0 | |
| 186530399 | 936 | ZIP4-like protein [Arabidopsis thaliana] | 0.986 | 0.772 | 0.649 | 0.0 | |
| 255572710 | 938 | conserved hypothetical protein [Ricinus | 0.960 | 0.750 | 0.653 | 0.0 | |
| 147856912 | 930 | hypothetical protein VITISV_014604 [Viti | 0.963 | 0.759 | 0.660 | 0.0 | |
| 302144206 | 848 | unnamed protein product [Vitis vinifera] | 0.950 | 0.821 | 0.659 | 0.0 | |
| 449470356 | 948 | PREDICTED: testis-expressed sequence 11 | 0.975 | 0.754 | 0.601 | 0.0 | |
| 8777369 | 1337 | unnamed protein product [Arabidopsis tha | 0.877 | 0.480 | 0.637 | 0.0 | |
| 297792017 | 1334 | hypothetical protein ARALYDRAFT_331248 [ | 0.931 | 0.511 | 0.601 | 0.0 | |
| 357507907 | 501 | hypothetical protein MTR_7g080870 [Medic | 0.594 | 0.870 | 0.655 | 1e-154 |
| >gi|224129338|ref|XP_002320560.1| predicted protein [Populus trichocarpa] gi|222861333|gb|EEE98875.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/749 (68%), Positives = 596/749 (79%), Gaps = 28/749 (3%)
Query: 1 MRIAEISSPDIRH--------QSNG-HDRLLAQLDSLIKQTENRS---HTNPETLTTLAS 48
M+I E+ SPD+R QSN H LL+Q++SLI QTEN S H+ PET++ S
Sbjct: 1 MKITEMYSPDLRKPNHDNQFIQSNHLHQHLLSQIESLIIQTENLSPNYHSLPETIS---S 57
Query: 49 DIKQILTQLSQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAV---- 104
D++Q LT L+QL PF NSLKL+IWKL+YRLWN+C+D+SNA SI SS + S +
Sbjct: 58 DLRQTLTHLTQLPPFP-NSLKLHIWKLAYRLWNACIDISNAVSILPSSPSPSHSSSFVEN 116
Query: 105 -ANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVS 163
A LRH+AAD++SLA DV+ + SPA+KSASFY KTG++WHDL+ +DLAS CFE+AT+IVS
Sbjct: 117 HAKLRHIAADMISLAGDVTSVTSPAVKSASFYLKTGLIWHDLRTFDLASSCFERATDIVS 176
Query: 164 KLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223
KLDI+ ISDS ERK+LLD+N+ARSRTAWE+ ++NLAI LL RAK LLFG +HYK LANQ
Sbjct: 177 KLDIAAISDSGERKMLLDLNLARSRTAWEISDRNLAIILLTRAKTLLFGSSDHYKQLANQ 236
Query: 224 YLTFAKSALSKNET--NSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFI 281
YL F KS LSKN NSL +ALKLM+EAL+L EKG ARTRE+ ELK L+ K+LRFI
Sbjct: 237 YLIFGKSVLSKNNDTDNSLKEALKLMSEALDLSEKGSSAARTREQIMELKELRSKSLRFI 296
Query: 282 SAIHLQKGEYESVIKCVRVLREGSFDGGD--HHASLPVLAMKAWLGLGRYNEAELELRGM 339
SA+HLQKGEYESVIKCV+VLREG+ G HHASLPVLAMKAWLGLGRY EAE ELR M
Sbjct: 297 SAVHLQKGEYESVIKCVKVLREGNGGGDGGDHHASLPVLAMKAWLGLGRYGEAEKELRDM 356
Query: 340 VEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEG 399
V KGIPE +WVSAVEAYF AAGTAGAET KGVFLGLLGRC VSA+AA R+A+RV G G
Sbjct: 357 VVNKGIPESVWVSAVEAYFDAAGTAGAETVKGVFLGLLGRCQVSARAAFRVANRVLGCVG 416
Query: 400 DGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459
G ++ LR K VA+LVSDERV+ALF +A AKER AMHAVLWN AS FRSKDYE S
Sbjct: 417 SGGEGSS--LRTKVVADLVSDERVVALFASEATAKERAAMHAVLWNRASEHFRSKDYETS 474
Query: 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFL 519
A MFEKS+LY+ D+ENRILRAK FRVLCLCYLGLS DRAQEYI EAEKLEPNIA AFL
Sbjct: 475 AVMFEKSLLYISHDIENRILRAKGFRVLCLCYLGLSQFDRAQEYINEAEKLEPNIACAFL 534
Query: 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579
KFKIYLQ ND GAINQ+ AM C DFT DFLSL+AHEAVAC AL VA+++LSNLL+FYT
Sbjct: 535 KFKIYLQNNDHNGAINQVQAMKTCFDFTPDFLSLSAHEAVACHALPVAISSLSNLLSFYT 594
Query: 580 SGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQ 639
G+ MPT EVVVLRT++TIL Q+ GNE EVLK+MKR H R SE+G CFFG EE GRRE+
Sbjct: 595 LGRSMPTTEVVVLRTLITILIQDPGNEVEVLKFMKRVHDRASELGTECFFGKEETGRREK 654
Query: 640 NWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAM 699
NW AV SWN GT CGKEKKYELC EFLRL S FYG+ VD Q EE+SI VCKSLIL+VSAM
Sbjct: 655 NWFAVTSWNTGTKCGKEKKYELCAEFLRLVSGFYGL-VDCQEEEHSIMVCKSLILSVSAM 713
Query: 700 IASENQKQIALMNNEVKQALELLDRAGKV 728
+ASENQK+ AL ++EVKQA+ELLDRAGK+
Sbjct: 714 VASENQKKTALTDSEVKQAVELLDRAGKI 742
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134304938|gb|ABO71664.1| ZIP4/SPO22 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/736 (65%), Positives = 587/736 (79%), Gaps = 13/736 (1%)
Query: 1 MRIAEISSPDIR--HQ---SNGHDRLLAQLDSLIKQTENRSHTNPETLTTLASDIKQILT 55
MRIAEI++PD+R H+ S+ H LL++++ LI+Q+E S P +L ++Q LT
Sbjct: 1 MRIAEITTPDLRLHHRETDSHTHHPLLSEIELLIQQSEAISKDQPLP-QSLPISLRQFLT 59
Query: 56 QLSQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLL 115
+LSQLAPF NS KL IWKLS+RLWN+CVDL+NAAS+ SS S +ANLRHVAAD+L
Sbjct: 60 RLSQLAPFPDNSFKLTIWKLSFRLWNACVDLANAASLQ--SSLTSAENIANLRHVAADML 117
Query: 116 SLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDE 175
LA DV+G+PSP IKS+ FY+KTG+V+H LKK+DLAS CFE+ATEIVSK+DI++ISD+ E
Sbjct: 118 FLAKDVTGVPSPTIKSSLFYYKTGLVYHSLKKFDLASDCFERATEIVSKIDIAKISDAGE 177
Query: 176 RKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN 235
+KL LD+N+ARSRTAWE+ ++NLA+TLLNRAK LLFG +HYKSL+NQ+L F KS+LS+
Sbjct: 178 KKLFLDLNLARSRTAWEISDRNLAVTLLNRAKNLLFGSPDHYKSLSNQFLAFGKSSLSRG 237
Query: 236 ETN-SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294
+ + SLNDAL+LMNEAL+LCEKGLG A+TRE+TTE ++ KTLRFISA+HLQKGE+E+V
Sbjct: 238 DDDCSLNDALRLMNEALDLCEKGLGTAKTREDTTEFTAMRIKTLRFISAVHLQKGEFENV 297
Query: 295 IKCVRVLREGS--FDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352
IKCV+VLR G DG D HASLPVLAMKAWLGLGR++EAE ELRGMV IPE +WVS
Sbjct: 298 IKCVKVLRNGGNGSDGADQHASLPVLAMKAWLGLGRHSEAEKELRGMVGNNDIPEAVWVS 357
Query: 353 AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAK 412
AVEAYF+ GTAGAETAKGVFLGLLGRCHVSAKAA+R+AHRV G+ G + ++RA
Sbjct: 358 AVEAYFEVVGTAGAETAKGVFLGLLGRCHVSAKAALRVAHRVLGESRGG--DNGSRIRAN 415
Query: 413 AVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF 472
VA+LVSDERV+ALF +A KER A+H+VLWN AS FR+KDYE SAEMFEKSMLY+P
Sbjct: 416 VVAQLVSDERVVALFASEAVTKERKAIHSVLWNSASDHFRAKDYETSAEMFEKSMLYIPH 475
Query: 473 DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEG 532
D+ENR+ RAK FRVLCLCYLGLS +DRA EYI EAEKLEPNIA +FLKFKIYLQK +
Sbjct: 476 DIENRVFRAKGFRVLCLCYLGLSQLDRALEYIEEAEKLEPNIACSFLKFKIYLQKKEHSC 535
Query: 533 AINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVL 592
AI QI AMT CLDF+ D+LSL+AHEA++CQAL VAVA+LS L+FY SGK MPT EVVV
Sbjct: 536 AIGQIDAMTSCLDFSPDYLSLSAHEAISCQALPVAVASLSKFLSFYISGKKMPTTEVVVF 595
Query: 593 RTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTN 652
RT+VTILTQ+ G+E+E L +M +A +R S++G CFFG E G+REQNW AV WN G+
Sbjct: 596 RTLVTILTQDIGSETEALNFMLQAQSRASKLGTECFFGLGETGKREQNWFAVTCWNLGSR 655
Query: 653 CGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMN 712
CGKEKKYELC EFLRLASEFYG + E+ + +C+S+IL+V+AMIA E Q + AL
Sbjct: 656 CGKEKKYELCGEFLRLASEFYGYIDTDESGEDKLMICRSIILSVTAMIALEKQTKSALTE 715
Query: 713 NEVKQALELLDRAGKV 728
+VK A ELL RAGK+
Sbjct: 716 TQVKLAAELLVRAGKI 731
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186530399|ref|NP_199650.3| ZIP4-like protein [Arabidopsis thaliana] gi|167735842|dbj|BAG07186.1| ZIP4-like protein [Arabidopsis thaliana] gi|332008281|gb|AED95664.1| ZIP4-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/736 (64%), Positives = 586/736 (79%), Gaps = 13/736 (1%)
Query: 1 MRIAEISSPDIR--HQ---SNGHDRLLAQLDSLIKQTENRSHTNPETLTTLASDIKQILT 55
MRIAEI++PD+R H+ S+ H LL++++ LI+Q+E S P +L ++Q LT
Sbjct: 1 MRIAEITTPDLRLHHRETDSHTHHPLLSEIELLIQQSEAISKDQPLP-QSLPISLRQFLT 59
Query: 56 QLSQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLL 115
+LSQLAPF NS KL IWKLS+RLWN+CVDL+NAAS+ SS S +ANLRHVAAD+L
Sbjct: 60 RLSQLAPFPDNSFKLTIWKLSFRLWNACVDLANAASLQ--SSLTSAENIANLRHVAADML 117
Query: 116 SLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDE 175
LA DV+G+PSP IKS+ FY+KTG+V+H LKK+DLAS CFE+ATEIVSK+DI++ISD+ E
Sbjct: 118 FLAKDVTGVPSPTIKSSLFYYKTGLVYHSLKKFDLASDCFERATEIVSKIDIAKISDAGE 177
Query: 176 RKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN 235
+KL LD+N+ARSRTAWE+ ++NLA+TLLNRAK LLFG +HYKSL+NQ+L F KS+LS+
Sbjct: 178 KKLFLDLNLARSRTAWEISDRNLAVTLLNRAKNLLFGSPDHYKSLSNQFLAFGKSSLSRG 237
Query: 236 ETN-SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294
+ + SLNDAL+LMNEAL+LCEKGLG A+TRE+TTE ++ KTLRFISA+HLQKGE+E+V
Sbjct: 238 DDDCSLNDALRLMNEALDLCEKGLGTAKTREDTTEFTAMRIKTLRFISAVHLQKGEFENV 297
Query: 295 IKCVRVLREGS--FDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352
IKCV+VLR G DG D HASLPVLAMKAWLGLGR++EAE ELRGMV IPE +WVS
Sbjct: 298 IKCVKVLRNGGNGSDGADQHASLPVLAMKAWLGLGRHSEAEKELRGMVGNNDIPEAVWVS 357
Query: 353 AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAK 412
AVEAYF+ GTAGAETAKGVFLGLLGRCHVSAKAA+R+AHRV G+ G + ++RA
Sbjct: 358 AVEAYFEVVGTAGAETAKGVFLGLLGRCHVSAKAALRVAHRVLGESRGG--DNGSRIRAN 415
Query: 413 AVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF 472
VA+LVSDERV+ALF +A KER A+H+VLWN AS FR+KDYE SAEMFEKSMLY+P
Sbjct: 416 VVAQLVSDERVVALFASEAVTKERKAIHSVLWNSASDHFRAKDYETSAEMFEKSMLYIPH 475
Query: 473 DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEG 532
D+ENR+ RAK FRVLCLCYLGLS +DRA EYI EAEKLEPNIA +FLKFKIYLQK +
Sbjct: 476 DIENRVFRAKGFRVLCLCYLGLSQLDRALEYIEEAEKLEPNIACSFLKFKIYLQKKEHSC 535
Query: 533 AINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVL 592
AI QI AMT CLDF+ D+LSL+AHEA++CQAL VAVA+LS L+FY SGK MPT EVVV
Sbjct: 536 AIGQIDAMTSCLDFSPDYLSLSAHEAISCQALPVAVASLSKFLSFYISGKKMPTTEVVVF 595
Query: 593 RTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTN 652
RT+VTILTQ+ G+E+E L +M +A +R S++G CFFG E G+REQNW A WN G+
Sbjct: 596 RTLVTILTQDIGSETEALNFMLQAQSRASKLGTECFFGLGETGKREQNWFAATCWNLGSR 655
Query: 653 CGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMN 712
CGKEKKYELC EFLRLASEFYG + E+ + +C+S+IL+V+AMIA E Q + AL
Sbjct: 656 CGKEKKYELCGEFLRLASEFYGYIDTDESGEDKLMICRSIILSVTAMIALEKQTKSALTE 715
Query: 713 NEVKQALELLDRAGKV 728
+VK A ELL RAGK+
Sbjct: 716 TQVKLAAELLVRAGKI 731
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572710|ref|XP_002527288.1| conserved hypothetical protein [Ricinus communis] gi|223533381|gb|EEF35132.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/748 (65%), Positives = 592/748 (79%), Gaps = 44/748 (5%)
Query: 1 MRIAEISSPDI---------RHQSNGHDRLLAQLDSLIKQTENRSHTNPE-TLTTLASDI 50
MRI+EISSPD+ + N + LL+Q+DSLIKQTE S +N + +++L++ +
Sbjct: 1 MRISEISSPDLWRPNQNPQSPNDQNQYHHLLSQIDSLIKQTETISPSNNDINISSLSTHL 60
Query: 51 KQILTQLSQLA---PFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANL 107
+QILT LSQL PFS NS+ L+IWKLSYRLWNSCVD+SN +S S SS+ L
Sbjct: 61 RQILTDLSQLQQQHPFS-NSVNLHIWKLSYRLWNSCVDISNYSSSSSSSTV-------TL 112
Query: 108 RHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDI 167
RH+A+D+L LA +V+G+PS IKSASFY+KTG+++HDLK +DLAS CFEKAT+I+SK+D+
Sbjct: 113 RHIASDMLFLAVNVTGVPSTVIKSASFYYKTGLIYHDLKNFDLASTCFEKATDILSKIDL 172
Query: 168 SRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF 227
+ISD ERKL+LD+N++RSR+AWEV ++NLAITLLNRAK +LFG F+HYK+L+ QYL F
Sbjct: 173 MKISDPGERKLILDLNLSRSRSAWEVSDKNLAITLLNRAKNMLFGTFDHYKNLSLQYLAF 232
Query: 228 AKSALSKNETN-------SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRF 280
+KS LSK ETN +LNDA KL+ EAL+LC+KG +RTRE+T EL L+ KTLRF
Sbjct: 233 SKSLLSKRETNDDNSSNNALNDAFKLLTEALDLCQKGSTVSRTREQTLELNELRSKTLRF 292
Query: 281 ISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340
ISA+HLQK EYESV+KCVRVLR G +GGDHHASL VLAMKAWLGL RY EAE ELRGMV
Sbjct: 293 ISAVHLQKEEYESVLKCVRVLRGGEGEGGDHHASLAVLAMKAWLGLERYEEAEKELRGMV 352
Query: 341 EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGD 400
KG+PE +WVSAVEAYF+AAGTA AET KG+FLGLLGRCHVSA AAV++AHRV G G+
Sbjct: 353 VNKGVPEGVWVSAVEAYFEAAGTAAAETIKGLFLGLLGRCHVSASAAVKIAHRVIGSGGE 412
Query: 401 GVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASA 460
S +RAK VAELVSDERV+ALFVG+ KER AMHAVLWNCAS FRSK+Y+ SA
Sbjct: 413 ESS-----IRAKVVAELVSDERVVALFVGEGVVKERKAMHAVLWNCASDHFRSKEYKTSA 467
Query: 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLK 520
E+FEKS+LY+P+D+ENRILRAK FRVL LCYL L+ DRA+EYI EAEK
Sbjct: 468 ELFEKSLLYIPYDIENRILRAKGFRVLSLCYLALNQHDRAEEYINEAEK----------- 516
Query: 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580
FKIYLQKN+ GA+NQI AM C+DF DFLSLAAHEA+AC +LS+A A+LSNLLNFYT
Sbjct: 517 FKIYLQKNNHSGALNQIQAMKACIDFIPDFLSLAAHEAIACHSLSIAAASLSNLLNFYTL 576
Query: 581 GKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQN 640
GKPMPT EV VLRTI+TIL+++ GNESEVLK+MKRAH R SE+G F+G E G+REQN
Sbjct: 577 GKPMPTTEVEVLRTIITILSKDIGNESEVLKFMKRAHTRASELGTERFYGKGEVGKREQN 636
Query: 641 WLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMI 700
W AV SWNFGT CGKEK YELC EFLRL SEF ++GQ+EE+ I VCKSLILTVSAMI
Sbjct: 637 WFAVTSWNFGTKCGKEKNYELCSEFLRLISEFCAAPIEGQIEEHDIMVCKSLILTVSAMI 696
Query: 701 ASENQKQIALMNNEVKQALELLDRAGKV 728
ASENQK++AL+ +EVKQA+ELLD+AGK+
Sbjct: 697 ASENQKKVALIESEVKQAVELLDKAGKM 724
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856912|emb|CAN80761.1| hypothetical protein VITISV_014604 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/731 (66%), Positives = 585/731 (80%), Gaps = 25/731 (3%)
Query: 1 MRIAEISSPDIRHQSNGHD---RLLAQLDSLIKQTENRSHTNPETLTTLASDIKQILTQL 57
MRIAE++SP+IR + HD +LL+QL++ I Q E S P T L+SD++ L+QL
Sbjct: 1 MRIAELTSPEIR--PSHHDSLSQLLSQLEASINQCELLSPEKPLP-TNLSSDLRSTLSQL 57
Query: 58 SQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSL 117
S L PFS NS+KL IWKLSYRLWN+CVDLSN A + RSS V LR V+AD+L L
Sbjct: 58 SSLVPFS-NSIKLQIWKLSYRLWNACVDLSNVAGV-RSSGDKVGEEVVKLRQVSADMLLL 115
Query: 118 AADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERK 177
A +V+G+PSPA+KSASFY+KTG++W +L+++DLA+ CFEKAT++ SKLD + ISD+ ERK
Sbjct: 116 AGNVAGVPSPALKSASFYYKTGLIWLELRRFDLAASCFEKATDLTSKLDAATISDAGERK 175
Query: 178 LLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNET 237
LLLD+NIARSRTAW+V ++NLA+TLLNRAK LLFG EHYK+LANQYL F KSALSK E
Sbjct: 176 LLLDLNIARSRTAWDVSDRNLAVTLLNRAKNLLFGSAEHYKALANQYLVFGKSALSKIEG 235
Query: 238 NSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297
+ +ALKLMNEAL+L EKGL ARTR T +LK L+ K LRFI+A+HLQ E+ESV+KC
Sbjct: 236 CGVKEALKLMNEALDLFEKGLSTARTRNGTEDLKALRSKCLRFIAAVHLQGEEFESVLKC 295
Query: 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357
+RVLREG GD H LPVLAMKAWLGLGRY EAE ELRGMV KG+PE IWVSA+EAY
Sbjct: 296 IRVLREGD---GDRHPCLPVLAMKAWLGLGRYGEAEKELRGMVVNKGVPEGIWVSAIEAY 352
Query: 358 FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417
F+AAGTAGAETAKG+FLGLLGRCHVSA AAVR+AHRV G+ S + RAK VAEL
Sbjct: 353 FEAAGTAGAETAKGLFLGLLGRCHVSAGAAVRIAHRVVGEG---GSGEGXRARAKVVAEL 409
Query: 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENR 477
VSDERV+ALF G+AAAK+R AMHAVLWNCA+ F KDY SAEMFEKSMLY+P+++ENR
Sbjct: 410 VSDERVVALFAGEAAAKDRTAMHAVLWNCAADHFLLKDYVTSAEMFEKSMLYVPYNJENR 469
Query: 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQI 537
ILRAK FRVLCLC+LGLS +D+AQEYI EAEK FKIYLQK+D AI+Q+
Sbjct: 470 ILRAKGFRVLCLCHLGLSQLDQAQEYINEAEK-----------FKIYLQKSDHNAAISQM 518
Query: 538 LAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVT 597
MT C+DFT DFLSL+AHEA+AC+A+ VAVA+L+NLLNFY+SGKPMPT EV VLRT+VT
Sbjct: 519 QGMTTCIDFTPDFLSLSAHEAIACRAIPVAVASLANLLNFYSSGKPMPTTEVAVLRTLVT 578
Query: 598 ILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEK 657
ILTQ++G E E+LK+MKRAH R SE+G +CFFG E GRRE+NW AV +WNFGTN GKEK
Sbjct: 579 ILTQDSGYEQEILKFMKRAHLRISELGPDCFFGKGEVGRRERNWFAVNAWNFGTNTGKEK 638
Query: 658 KYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMNNEVKQ 717
YE+C EFLRLASEFY + +DG++EEN++ VCKSL LTVSAM+A+E QKQ L++ EVKQ
Sbjct: 639 NYEVCAEFLRLASEFYSVVLDGEMEENNVMVCKSLTLTVSAMLAAEKQKQARLLDTEVKQ 698
Query: 718 ALELLDRAGKV 728
A++LL+RAGK+
Sbjct: 699 AIKLLERAGKI 709
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302144206|emb|CBI23333.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/731 (65%), Positives = 579/731 (79%), Gaps = 34/731 (4%)
Query: 1 MRIAEISSPDIRHQSNGHD---RLLAQLDSLIKQTENRSHTNPETLTTLASDIKQILTQL 57
MRIAE++SP+IR + HD +LL+QL++ I Q E S P T L+SD++ L+QL
Sbjct: 1 MRIAELTSPEIR--PSHHDSLSQLLSQLEASINQCELLSPEKPLP-TNLSSDLRSTLSQL 57
Query: 58 SQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSL 117
S L PFS NS+KL IWKLSYRLWN+CVDLSN A + RSS V LR V+AD+L L
Sbjct: 58 SSLVPFS-NSIKLQIWKLSYRLWNACVDLSNVAGV-RSSGDKVGEEVVKLRQVSADMLLL 115
Query: 118 AADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERK 177
A +V+G+PSPA+KSASFY+KTG++W +L+++DLA+ CFEKAT++ SKLD + ISD+ ERK
Sbjct: 116 AGNVAGVPSPALKSASFYYKTGLIWLELRRFDLAASCFEKATDLTSKLDAATISDAGERK 175
Query: 178 LLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNET 237
LLLD+NIARSRTAW+V ++NLA+TLLNRAK LLFG EHYK+LANQYL F KSALSK E
Sbjct: 176 LLLDLNIARSRTAWDVSDRNLAVTLLNRAKNLLFGSAEHYKALANQYLVFGKSALSKIEG 235
Query: 238 NSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297
+ +ALKLMNEAL+L EKGL ARTR T +LK L+ K LRFI+A+HLQ E+ESV+KC
Sbjct: 236 CGVKEALKLMNEALDLFEKGLSTARTRNGTEDLKALRSKCLRFIAAVHLQGEEFESVLKC 295
Query: 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357
+RVLREG GD H LPVLAMKAWLGLGRY EAE ELRGMV KG+PE IWVSA+EAY
Sbjct: 296 IRVLREGD---GDRHPCLPVLAMKAWLGLGRYGEAEKELRGMVVNKGVPEGIWVSAIEAY 352
Query: 358 FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417
F+AAGTAGAETAKG+FLGLLGRCHVSA AAVR+AHRV G+ G G A RAK VAEL
Sbjct: 353 FEAAGTAGAETAKGLFLGLLGRCHVSAGAAVRIAHRVVGEGGSGEGPRA---RAKVVAEL 409
Query: 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENR 477
VSDERV+ALF G+AAAK+R AMHAVLWNCA+ F KDY SAEMFEKSMLY+P+++ENR
Sbjct: 410 VSDERVVALFAGEAAAKDRTAMHAVLWNCAADHFLLKDYVTSAEMFEKSMLYVPYNIENR 469
Query: 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQI 537
ILRAK FRVLCLC+LGLS +D+AQEYI EAEKLEPNIA AFLKFKIYLQK+D AI
Sbjct: 470 ILRAKGFRVLCLCHLGLSQLDQAQEYINEAEKLEPNIACAFLKFKIYLQKSDHNAAIT-- 527
Query: 538 LAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVT 597
HEA+AC+A+ VAVA+L+NLLNFY+SGKPMPT EV VLRT+VT
Sbjct: 528 ------------------HEAIACRAIPVAVASLANLLNFYSSGKPMPTTEVAVLRTLVT 569
Query: 598 ILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEK 657
ILTQ++G E E+LK+MKRAH R SE+G +CFFG E GRRE+NW AV +WNFGTN GKEK
Sbjct: 570 ILTQDSGYEQEILKFMKRAHLRISELGPDCFFGKGEVGRRERNWFAVNAWNFGTNTGKEK 629
Query: 658 KYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMNNEVKQ 717
YE+C EFLRLASEFY + +DG++EEN++ VCKSL LTVSAM+A+E QKQ L++ EVKQ
Sbjct: 630 NYEVCAEFLRLASEFYSVVLDGEMEENNVMVCKSLTLTVSAMLAAEKQKQARLLDTEVKQ 689
Query: 718 ALELLDRAGKV 728
A++LL+RAGK+
Sbjct: 690 AIKLLERAGKI 700
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470356|ref|XP_004152883.1| PREDICTED: testis-expressed sequence 11 protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/750 (60%), Positives = 564/750 (75%), Gaps = 35/750 (4%)
Query: 1 MRIAEISSPDIRHQSNG------------------HDRLLAQLDSLIKQTE---NRSHTN 39
MRIAEI SP + + +L Q+++LIK+ E + S +
Sbjct: 1 MRIAEIPSPSQSQSQSQSQSQSQQQQSNSQFRFHLFNPILLQIETLIKKAELFSSVSAAD 60
Query: 40 PETLTTLASDIKQILTQLSQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAF 99
+ D++ LT L+Q PF NS KL+IWKLSYRLWN+CVDLSN ++ RSS+
Sbjct: 61 HPLSPAIPDDLRHSLTHLAQFTPFP-NSTKLHIWKLSYRLWNACVDLSNTSAARRSSTDH 119
Query: 100 SPYAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKAT 159
ANLRHVA+DLL LA DV+G+PSPA+K ASFY+KTG++WH LK ++LAS CFE+A+
Sbjct: 120 -----ANLRHVASDLLYLAGDVTGVPSPAVKFASFYYKTGLIWHGLKNFELASSCFERAS 174
Query: 160 EIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS 219
+IVSK+D++ + DSD +KLLLD+NIAR+RTAW+V ++NLA+ LL+RAK L+FG EHYK+
Sbjct: 175 DIVSKIDLTSVVDSDAKKLLLDLNIARARTAWQVSDKNLAMVLLSRAKGLMFGSPEHYKA 234
Query: 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLR 279
L ++YL+F K LSK ET + +ALKLMNEA +L EKGL AR RE+ E K L+ KTLR
Sbjct: 235 LGDEYLSFGKIELSKGETQAFREALKLMNEAFDLFEKGLRVARGREDMVEFKALRSKTLR 294
Query: 280 FISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339
FISA+HLQ E+ESVIKCVR+LR+G D GD+H SLPVLA+KAWLGLGR+ EAE ELRGM
Sbjct: 295 FISAVHLQVEEFESVIKCVRILRDG--DCGDNHPSLPVLALKAWLGLGRHGEAEKELRGM 352
Query: 340 VEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEG 399
+E KGIPE WVSAVE YF+A G AGAETA GVF+GLLGRCHVSA AAVR+A++V G G
Sbjct: 353 IENKGIPESAWVSAVETYFEAVGGAGAETAMGVFMGLLGRCHVSAGAAVRVAYKVVGHGG 412
Query: 400 DGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459
+ VSE +RA+ A+LVSDERVL LF G+ AK+R AMH +LWNCA+ FRSK Y S
Sbjct: 413 E-VSE----VRARVAAKLVSDERVLTLFRGETTAKQRKAMHTLLWNCAADHFRSKGYVIS 467
Query: 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFL 519
AEMFEKSMLY+P+D+ENR LRAK FRVLCLCYLGLS +DRAQEY+ EAEKLEP+IA AFL
Sbjct: 468 AEMFEKSMLYIPYDIENRNLRAKGFRVLCLCYLGLSQLDRAQEYVNEAEKLEPSIACAFL 527
Query: 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579
KFKI L KND AINQI +M CLDFT DFLSL+AHEAVAC+A VAVA+L++LL+FY+
Sbjct: 528 KFKISLLKNDNTTAINQIQSMMSCLDFTPDFLSLSAHEAVACRAFPVAVASLNSLLDFYS 587
Query: 580 SGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQ 639
+GK MP +EVVV RT+VTILTQE+ ++SE+L+ +KRA R E+G CFFG E G+REQ
Sbjct: 588 TGKSMPAREVVVFRTLVTILTQESNDDSEILRVLKRACDRAVELGPGCFFGEAEVGKREQ 647
Query: 640 NWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVD-GQVEENSITVCKSLILTVSA 698
W +V WNFGT G+E+K+ELC EF+ LAS+FY D QVEE+++ V +SL LTV+A
Sbjct: 648 KWFSVACWNFGTKMGRERKFELCSEFMHLASKFYAALADEEQVEEHNVLVFRSLTLTVAA 707
Query: 699 MIASENQKQIALMNNEVKQALELLDRAGKV 728
IASE Q + L N ++KQA ELLDRAGK+
Sbjct: 708 TIASEEQTKTTLTNAKIKQAKELLDRAGKI 737
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8777369|dbj|BAA96959.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/682 (63%), Positives = 524/682 (76%), Gaps = 39/682 (5%)
Query: 45 TLASDIK-QILTQLSQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYA 103
T SD K Q LT+LSQLAPF NS KL IWKLS+RLWN+CVDL+NAAS+ SS S
Sbjct: 485 TFTSDKKRQFLTRLSQLAPFPDNSFKLTIWKLSFRLWNACVDLANAASLQ--SSLTSAEN 542
Query: 104 VANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVS 163
+ANLRHVAAD+L LA DV+G+PSP IKS+ FY+KTG+V+H LKK+DLAS CFE+ATEIVS
Sbjct: 543 IANLRHVAADMLFLAKDVTGVPSPTIKSSLFYYKTGLVYHSLKKFDLASDCFERATEIVS 602
Query: 164 KLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223
K+DI++ISD+ E+KL LD+N+ARSRTAWE+ ++NLA+TLLNRAK LLFG +HYKSL+NQ
Sbjct: 603 KIDIAKISDAGEKKLFLDLNLARSRTAWEISDRNLAVTLLNRAKNLLFGSPDHYKSLSNQ 662
Query: 224 YLTFAKSALSKNETN-SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFIS 282
+L F KS+LS+ + + SLNDAL+LMNEAL+LCEKGLG A+TRE+TTE ++ KTLRFIS
Sbjct: 663 FLAFGKSSLSRGDDDCSLNDALRLMNEALDLCEKGLGTAKTREDTTEFTAMRIKTLRFIS 722
Query: 283 AIHLQKGEYESVIKCVRVLREGS--FDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340
A+HLQKGE+E+VIKCV+VLR G DG D HASLPVLAMKAWLGLGR++EAE ELRGMV
Sbjct: 723 AVHLQKGEFENVIKCVKVLRNGGNGSDGADQHASLPVLAMKAWLGLGRHSEAEKELRGMV 782
Query: 341 EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGD 400
IPE +WVSAVEAYF+ GTAGAETAKGVFLGLLGRCHVSAKAA+R+AHRV G+
Sbjct: 783 GNNDIPEAVWVSAVEAYFEVVGTAGAETAKGVFLGLLGRCHVSAKAALRVAHRVLGESRG 842
Query: 401 GVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASA 460
G + ++RA VA+LVSDERV+ALF +A KER A+H+VLWN AS FR+KDYE SA
Sbjct: 843 G--DNGSRIRANVVAQLVSDERVVALFASEAVTKERKAIHSVLWNSASDHFRAKDYETSA 900
Query: 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLK 520
EMFEKSMLY+P D+ENR+ RAK FRVLCLCYLGLS +DRA EYI EAEK
Sbjct: 901 EMFEKSMLYIPHDIENRVFRAKGFRVLCLCYLGLSQLDRALEYIEEAEK----------- 949
Query: 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580
FKIYLQK + AI AHEA++CQAL VAVA+LS L+FY S
Sbjct: 950 FKIYLQKKEHSCAI--------------------AHEAISCQALPVAVASLSKFLSFYIS 989
Query: 581 GKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQN 640
GK MPT EVVV RT+VTILTQ+ G+E+E L +M +A +R S++G CFFG E G+REQN
Sbjct: 990 GKKMPTTEVVVFRTLVTILTQDIGSETEALNFMLQAQSRASKLGTECFFGLGETGKREQN 1049
Query: 641 WLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMI 700
W A WN G+ CGKEKKYELC EFLRLASEFYG + E+ + +C+S+IL+V+AMI
Sbjct: 1050 WFAATCWNLGSRCGKEKKYELCGEFLRLASEFYGYIDTDESGEDKLMICRSIILSVTAMI 1109
Query: 701 ASENQKQIALMNNEVKQALELL 722
A E Q + AL +VK A ELL
Sbjct: 1110 ALEKQTKSALTETQVKLAAELL 1131
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792017|ref|XP_002863893.1| hypothetical protein ARALYDRAFT_331248 [Arabidopsis lyrata subsp. lyrata] gi|297309728|gb|EFH40152.1| hypothetical protein ARALYDRAFT_331248 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/737 (60%), Positives = 548/737 (74%), Gaps = 54/737 (7%)
Query: 2 RIAEISSPDIRHQS--NGHDRLLAQ---LDSLIKQTENRSHTNPET-----LTTLASDIK 51
R A+ PD + + G+ R++ + L + TE + T T L T SD K
Sbjct: 430 RGAQPRVPDNNNNNIKTGYGRVIPERLTLSVPLLHTETSTETAISTRLLLLLLTFTSDKK 489
Query: 52 --QILTQLSQLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRH 109
Q LT+LSQLAPF NS KL IWKLS+RLWN+CVDLSNAAS+ SS+ S ++ANLRH
Sbjct: 490 KRQSLTRLSQLAPFPDNSFKLTIWKLSFRLWNACVDLSNAASLQSSST--SAESIANLRH 547
Query: 110 VAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISR 169
VAAD+L LA DV+G+PSP IKS+ FY++TG+V+H LKK+DLASGCFE+ATEIVSK+DI++
Sbjct: 548 VAADMLFLAKDVTGVPSPTIKSSLFYYRTGLVYHSLKKFDLASGCFERATEIVSKIDITK 607
Query: 170 ISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAK 229
ISD+ E+KL LD+N+ARSRTAW + ++NLA+TLLNRAK +LFG +HYKSL+NQ+L F K
Sbjct: 608 ISDAGEKKLFLDLNLARSRTAWGISDRNLAVTLLNRAKNMLFGSPDHYKSLSNQFLAFGK 667
Query: 230 SALSKNETN-SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288
S+LS+++ + SLNDAL+LMNEAL+LCEKGLG A+TRE+T E G++ KTLRFISA+HLQK
Sbjct: 668 SSLSRDDDDCSLNDALRLMNEALDLCEKGLGTAKTREDTMEFTGMRIKTLRFISAVHLQK 727
Query: 289 GEYESVIKCVRVLREG--SFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346
GE+E+VIKCV+VLR G DG D HASLPVLAMKAWLGLGR++EAE ELRGMV IP
Sbjct: 728 GEFENVIKCVKVLRNGGNGSDGADQHASLPVLAMKAWLGLGRHSEAEKELRGMVGNNDIP 787
Query: 347 ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAA 406
E +WVSAVEAYF+ GTAGAETAKGVFLGLLGRCHVSAKAA+R+AHRV G+ G +
Sbjct: 788 EAVWVSAVEAYFEVVGTAGAETAKGVFLGLLGRCHVSAKAALRVAHRVLGESRGG--DNG 845
Query: 407 VKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKS 466
++RA VA+LVSDERV+ALF G+A KER A+H+VLWN AS FR+KDYE SAEMFEKS
Sbjct: 846 SRIRANVVAQLVSDERVVALFAGEAVTKERKAIHSVLWNSASDHFRAKDYETSAEMFEKS 905
Query: 467 MLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQ 526
MLY+P D+ENR+ RAK FRVLCLCYLGLS +DRA EYI EAE KFKIYLQ
Sbjct: 906 MLYIPHDIENRVFRAKGFRVLCLCYLGLSQLDRALEYIEEAE-----------KFKIYLQ 954
Query: 527 KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPT 586
K D ++HEA++CQAL VAVA+LS L+FY SGK MPT
Sbjct: 955 KKDH-----------------------SSHEAISCQALPVAVASLSKFLSFYISGKTMPT 991
Query: 587 KEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMS 646
EVVV RT++TILTQ+ G+E+E L +M +A +R S++G CFFG+ E G+RE+NW AV
Sbjct: 992 TEVVVFRTLITILTQDIGSETEALNFMLQAQSRASKLGTECFFGSGETGKRERNWFAVTC 1051
Query: 647 WNFGTNCGKEKKYELCMEFLRLASEFYGIRVD-GQVEENSITVCKSLILTVSAMIASENQ 705
WN G+ CG KKYELC EFLRLASEFY +D + EN + +C+S+IL V+AMIA E Q
Sbjct: 1052 WNLGSRCGNAKKYELCGEFLRLASEFYSYMMDTDESGENKMMICRSIILNVTAMIALEKQ 1111
Query: 706 KQIALMNNEVKQALELL 722
+ AL +VK A ELL
Sbjct: 1112 NKSALTETQVKLAAELL 1128
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507907|ref|XP_003624242.1| hypothetical protein MTR_7g080870 [Medicago truncatula] gi|355499257|gb|AES80460.1| hypothetical protein MTR_7g080870 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/450 (65%), Positives = 362/450 (80%), Gaps = 14/450 (3%)
Query: 1 MRIAEISSPDIR--HQSNGHDRLLAQLDSLIKQTENRSHTNPETLTTLASDIKQILTQLS 58
MRIAEISSP++R H + +L+Q++S+IKQ E+ S N + T +++Q LTQLS
Sbjct: 1 MRIAEISSPELRTLHGDSDDHHILSQIESIIKQIESHS-VNKQPPETTVVNLRQCLTQLS 59
Query: 59 QLAPFSSNSLKLYIWKLSYRLWNSCVDLSNAASI--SRSSSAFSPYAVANLRHVAADLLS 116
QLAPFS NSLKL IWKLSYRLWN CVD+SN ASI S SS+ + A LRH+ ADLLS
Sbjct: 60 QLAPFS-NSLKLQIWKLSYRLWNVCVDISNTASIRFSSSSTTVAGENQAELRHLTADLLS 118
Query: 117 LAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDER 176
+A+DV+GIPSPAIKSASFY+KTG++WH+L+K+DLA+ C+E+AT++VSKLDI+ I+D+ ER
Sbjct: 119 IASDVTGIPSPAIKSASFYYKTGMLWHNLRKFDLAAKCYERATDLVSKLDIASITDAGER 178
Query: 177 KLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNE 236
KLLLD+N+ARSRTAWEV +QNLAI LLNR+K ++ G E+Y LA Q+++F K +L+ N
Sbjct: 179 KLLLDLNLARSRTAWEVRDQNLAIALLNRSKSMVSGSSENYMELAKQFMSFGKCSLAAN- 237
Query: 237 TNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIK 296
+ L++ALKLMNEALE CEKG G ARTREE E++GL++K LRFI+AIHLQK E+ESV+K
Sbjct: 238 -SDLSEALKLMNEALENCEKGFGAARTREEKVEIRGLRWKVLRFIAAIHLQKEEFESVVK 296
Query: 297 CVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356
CV+VLR+ S +GGD H SL VLAMKAWLGLGR+ EAE ELRGMV +GIPE +WVSAVEA
Sbjct: 297 CVKVLRD-SAEGGDDHPSLSVLAMKAWLGLGRHVEAEKELRGMVIDRGIPEGVWVSAVEA 355
Query: 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAE 416
YF AAGTAGAETAKGVFLGLLGRCHVSA AAVR+A RV G G+G K+RAK VAE
Sbjct: 356 YFTAAGTAGAETAKGVFLGLLGRCHVSAGAAVRVASRVLGGSGEG-----SKVRAKVVAE 410
Query: 417 LVSDERVLALFVGDAAAKERIAMHAVLWNC 446
LVSDERV+ALF AAK+R AMHAVLWNC
Sbjct: 411 LVSDERVVALFAEKDAAKDRTAMHAVLWNC 440
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 733 | ||||||
| TAIR|locus:2165991 | 936 | AtSPO22 "AT5G48390" [Arabidops | 0.986 | 0.772 | 0.591 | 1e-226 | |
| UNIPROTKB|F1N8L3 | 864 | F1N8L3 "Uncharacterized protei | 0.167 | 0.142 | 0.287 | 2.2e-08 | |
| UNIPROTKB|Q8IYF3 | 940 | TEX11 "Testis-expressed sequen | 0.169 | 0.131 | 0.267 | 1.6e-06 | |
| RGD|1560239 | 723 | Tex11 "testis expressed 11" [R | 0.173 | 0.175 | 0.231 | 0.00031 |
| TAIR|locus:2165991 AtSPO22 "AT5G48390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2188 (775.3 bits), Expect = 1.0e-226, P = 1.0e-226
Identities = 435/736 (59%), Positives = 536/736 (72%)
Query: 1 MRIAEISSPDIR--HQ---SNGHDRLLAQLDSLIKQTENRSHTNPETLTTLASDIKQILT 55
MRIAEI++PD+R H+ S+ H LL++++ LI+Q+E S P +L ++Q LT
Sbjct: 1 MRIAEITTPDLRLHHRETDSHTHHPLLSEIELLIQQSEAISKDQPLP-QSLPISLRQFLT 59
Query: 56 QLSQLAPFSSNSLKLYIWKLSYRLWNSCVDLXXXXXXXXXXXXXXXXXVANLRHXXXXXX 115
+LSQLAPF NS KL IWKLS+RLWN+CVDL +ANLRH
Sbjct: 60 RLSQLAPFPDNSFKLTIWKLSFRLWNACVDLANAASLQSSLTSAEN--IANLRHVAADML 117
Query: 116 XXXXXXXGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDE 175
G+PSP IKS+ FY+KTG+V+H LKK+DLAS CFE+ATEIVSK+DI++ISD+ E
Sbjct: 118 FLAKDVTGVPSPTIKSSLFYYKTGLVYHSLKKFDLASDCFERATEIVSKIDIAKISDAGE 177
Query: 176 RKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN 235
+KL LD+N+ARSRTAWE+ ++NLA+TLLNRAK LLFG +HYKSL+NQ+L F KS+LS+
Sbjct: 178 KKLFLDLNLARSRTAWEISDRNLAVTLLNRAKNLLFGSPDHYKSLSNQFLAFGKSSLSRG 237
Query: 236 ETN-SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294
+ + SLNDAL+LMNEAL+LCEKGLG A+TRE+TTE ++ KTLRFISA+HLQKGE+E+V
Sbjct: 238 DDDCSLNDALRLMNEALDLCEKGLGTAKTREDTTEFTAMRIKTLRFISAVHLQKGEFENV 297
Query: 295 IKCVRVLREGS--FDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352
IKCV+VLR G DG D HASLPVLAMKAWLGLGR++EAE ELRGMV IPE +WVS
Sbjct: 298 IKCVKVLRNGGNGSDGADQHASLPVLAMKAWLGLGRHSEAEKELRGMVGNNDIPEAVWVS 357
Query: 353 AVEAYFQXXXXXXXXXXKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAK 412
AVEAYF+ KGVFLGLLGRCHVSAKAA+R+AHRV G+ G + ++RA
Sbjct: 358 AVEAYFEVVGTAGAETAKGVFLGLLGRCHVSAKAALRVAHRVLGESRGG--DNGSRIRAN 415
Query: 413 AVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF 472
VA+LVSDERV+ALF +A KER A+H+VLWN AS FR+KDYE SAEMFEKSMLY+P
Sbjct: 416 VVAQLVSDERVVALFASEAVTKERKAIHSVLWNSASDHFRAKDYETSAEMFEKSMLYIPH 475
Query: 473 DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEG 532
D+ENR+ RAK FRVLCLCYLGLS +DRA EYI EAEKLEPNIA +FLKFKIYLQK +
Sbjct: 476 DIENRVFRAKGFRVLCLCYLGLSQLDRALEYIEEAEKLEPNIACSFLKFKIYLQKKEHSC 535
Query: 533 AINQILAMTICLDFTTDFLSLAAHEAVACQXXXXXXXXXXXXXXFYTSGKPMPTKEXXXX 592
AI QI AMT CLDF+ D+LSL+AHEA++CQ FY SGK MPT E
Sbjct: 536 AIGQIDAMTSCLDFSPDYLSLSAHEAISCQALPVAVASLSKFLSFYISGKKMPTTEVVVF 595
Query: 593 XXXXXXXXQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTN 652
Q+ G+E+E L +M +A +R S++G CFFG E G+REQNW A WN G+
Sbjct: 596 RTLVTILTQDIGSETEALNFMLQAQSRASKLGTECFFGLGETGKREQNWFAATCWNLGSR 655
Query: 653 CGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMN 712
CGKEKKYELC EFLRLASEFYG + E+ + +C+S+IL+V+AMIA E Q + AL
Sbjct: 656 CGKEKKYELCGEFLRLASEFYGYIDTDESGEDKLMICRSIILSVTAMIALEKQTKSALTE 715
Query: 713 NEVKQALELLDRAGKV 728
+VK A ELL RAGK+
Sbjct: 716 TQVKLAAELLVRAGKI 731
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| UNIPROTKB|F1N8L3 F1N8L3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 38/132 (28%), Positives = 71/132 (53%)
Query: 416 ELVSDERVLALFVGDAAAKERIA-----MHAVLWNCASILFRSKDYEASAEMFEKSM-LY 469
EL++ ++V + +G K+ + +H +LW+ A+ + +K Y + + S+ Y
Sbjct: 330 ELLAKQKVEEIIIGHYTGKQLLPETLNRLHIILWDTAAKHYEAKSYSEALHWYNYSVSFY 389
Query: 470 LPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN-IASAFLKFKIYLQKN 528
P ++ + AK R + CYL L ID+A+E + EAE+ + N I + F +KI + +N
Sbjct: 390 TPGQIDQNL--AKLQRNMASCYLHLKQIDKAKEAVKEAERCDLNSIFTQFSVYKIAVMEN 447
Query: 529 DQEGAINQILAM 540
D + A+ I+ M
Sbjct: 448 DTDKAVEAIIEM 459
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| UNIPROTKB|Q8IYF3 TEX11 "Testis-expressed sequence 11 protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 35/131 (26%), Positives = 69/131 (52%)
Query: 416 ELVSDERVLALFVGDAAAKERIA-----MHAVLWNCASILFRSKDYEASAEMFEKSMLYL 470
EL++ E++ +F+ ++ A +H +LW A+ F ++Y + + + S+ +
Sbjct: 388 ELLAKEKIEEIFLAHQTGRQLTAESMNWLHNILWRQAASSFEVQNYTDALQWYYYSLRFY 447
Query: 471 PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND 529
D E + K R + CYL L +D+A+E + EAE+ +P N+ + F FKI + + +
Sbjct: 448 STD-EMDLDFTKLQRNMACCYLNLQQLDKAKEAVAEAERHDPRNVFTQFYIFKIAVIEGN 506
Query: 530 QEGAINQILAM 540
E A+ I+ +
Sbjct: 507 SERALQAIITL 517
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| RGD|1560239 Tex11 "testis expressed 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 32/138 (23%), Positives = 72/138 (52%)
Query: 416 ELVSDERVLALFVGDAAAKERIA------MHAVLWNCASILFRSKDYEASAEMFEKSM-L 468
+++++E++ + + D + R+ +H +LW A+ + ++Y + + S+ L
Sbjct: 172 DVIAEEKIKEILI-DHQTRSRLTRALVNWLHNILWGKATRCVKVQNYADALRWYSYSLKL 230
Query: 469 YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQK 527
Y + +++ K R + CYL L +D+A+E + EAE+ +P NI + + FKI +
Sbjct: 231 YECDQADMDLVKLK--RNMVSCYLSLKQLDKAKEALAEAEQQDPTNIFTQYYIFKIAILD 288
Query: 528 NDQEGAINQILAMTICLD 545
+ A+ + A+ I ++
Sbjct: 289 GEAYRALQIVSALKISME 306
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00141225 | hypothetical protein (956 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pm.C_LG_II000447 | hypothetical protein (874 aa) | • | 0.429 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 733 | |||
| pfam08631 | 280 | pfam08631, SPO22, Meiosis protein SPO22/ZIP4 like | 8e-57 | |
| pfam08631 | 280 | pfam08631, SPO22, Meiosis protein SPO22/ZIP4 like | 0.001 |
| >gnl|CDD|219943 pfam08631, SPO22, Meiosis protein SPO22/ZIP4 like | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 8e-57
Identities = 79/290 (27%), Positives = 131/290 (45%), Gaps = 18/290 (6%)
Query: 188 RTAWEVLEQNLAITLLNRAKCLL-FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKL 246
+ AW + +LA LL++AK L + + LA KS L + ++A+K
Sbjct: 1 QLAWRQGDLDLAEHLLSKAKSLKNSLDPDLTEELARVLYNIGKSLLERK--TDFSEAVKW 58
Query: 247 MNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF 306
+ AL+L EKG A+ +++TE LKF LR ++ L+ GE ESV+K ++ L
Sbjct: 59 LQRALDLLEKG---AKNDQKSTEGSELKFSILRLLAKALLETGESESVLKALKALSLLE- 114
Query: 307 DGGDHHASLPVLAMKAWLGL-GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAG 365
+ L +LA++ G E E L M++ + E + A+ + + A
Sbjct: 115 SEFPNKPELYLLALEILKKRPGPEEEYEDVLMRMIKSVDVTESNFELAISHINKLSDKAP 174
Query: 366 AETAKGVFLGLLGRCHVSA---KAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422
A AK + L RC+ S + RV A + + +AE +S R
Sbjct: 175 ASAAKCLDYLLFNRCNSSEDSNLLEKAVVTRVLLTTQSKELGA--GEKIEVLAEFLS--R 230
Query: 423 VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFE---KSMLY 469
V L +AK A+HA+LWN +++K+Y+ + E ++ SM Y
Sbjct: 231 VEKLLTKPLSAKAATAIHALLWNKGKKNYKTKNYDEALEWYKLALHSMFY 280
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SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation. Length = 280 |
| >gnl|CDD|219943 pfam08631, SPO22, Meiosis protein SPO22/ZIP4 like | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 22/255 (8%)
Query: 431 AAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRI-------LRAK 482
+ VL+N S+L R D+ + + ++++ L +N L+
Sbjct: 26 LDPDLTEELARVLYNIGKSLLERKTDFSEAVKWLQRALDLLEKGAKNDQKSTEGSELKFS 85
Query: 483 SFRVLCLCYLG---LSLIDRAQEYITEAEKLEPNIASAF-LKFKIYLQKNDQEGAINQIL 538
R+L L + +A + ++ E PN + L +I ++ E +L
Sbjct: 86 ILRLLAKALLETGESESVLKALKALSLLESEFPNKPELYLLALEILKKRPGPEEEYEDVL 145
Query: 539 -AMTICLDFTTDFLSLAAH---EAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRT 594
M +D T LA + S A L N S + E V+
Sbjct: 146 MRMIKSVDVTESNFELAISHINKLSDKAPASAAKCLDYLLFNRCNSSEDSNLLEKAVVTR 205
Query: 595 IVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCG 654
++ + E ++ + S + T+ + + + WN G
Sbjct: 206 VLLTTQSKELGAGEKIEVLAEF---LSRVEKLL---TKPLSAKAATAIHALLWNKGKKNY 259
Query: 655 KEKKYELCMEFLRLA 669
K K Y+ +E+ +LA
Sbjct: 260 KTKNYDEALEWYKLA 274
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SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation. Length = 280 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.87 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.86 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.64 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.64 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.48 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.35 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.34 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.32 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.31 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.3 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.29 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.22 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.17 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.17 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.16 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.16 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.14 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.13 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.12 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.07 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.05 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.05 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.0 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.99 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.82 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.78 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.69 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.68 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.64 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.5 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.45 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.4 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.36 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.35 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.24 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.19 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.18 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.16 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.07 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.05 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.86 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.85 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.84 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.83 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.75 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.7 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.68 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.58 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.49 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.46 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 97.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.36 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.05 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.04 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.99 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.93 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.86 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.84 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.79 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.71 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.58 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.32 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.29 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.09 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.04 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.01 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 95.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.96 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.95 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.78 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.68 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.62 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.56 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.25 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.23 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.16 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.1 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.74 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 94.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.62 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 94.58 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.48 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.34 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.68 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 93.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.56 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.43 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.43 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.34 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.18 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.01 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.0 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 92.97 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.86 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.84 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 92.76 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.7 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.29 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 92.13 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.03 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.94 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 91.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.72 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.66 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.51 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 91.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 91.21 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 90.98 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.84 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.72 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.26 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.64 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.92 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.87 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.67 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.44 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.4 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 88.37 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.12 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 88.11 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 87.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 86.92 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 86.71 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 86.0 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 84.28 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 82.82 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 82.59 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 82.28 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.24 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.08 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.87 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 81.07 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.68 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 80.35 |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=500.60 Aligned_cols=595 Identities=13% Similarity=0.019 Sum_probs=471.0
Q ss_pred hhHHHHHHHHHHHHhHHHhhcccccccccCCCCCChhhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhcc
Q 004720 66 NSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDL 145 (733)
Q Consensus 66 ~~~~~~l~~~a~~LWN~~v~~~~~~~~~~~~~~~~~~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~ 145 (733)
.+.+.++.+++.++|||.|+. .+ -..++++..+-.++|.+++++.+...++....++|.+.++.|..|++.
T Consensus 5 ~~~d~~~~e~~~~~~~~a~~~-------~~--l~~~~~~~~~~~v~~~l~y~~~~~~ase~~~~dLi~~~~~~~~e~l~~ 75 (872)
T KOG4814|consen 5 KASDKYFNEVFCKCKIFATKL-------LS--IHEALFRTNTNLLRNFKCYISSFKSASEYRFDDLITNTQQHSEKYLQI 75 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HH--HHHHHhcCCcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999 33 225677778899999999999999888999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHh---hccCCChHHHHH--------HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 146 KKYDLASGCFEKATEIVSKLD---ISRISDSDERKL--------LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 146 g~~~~A~~~lekA~e~~~~~~---~~~~~~~~e~~~--------~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
+| .+..||++++.....++ +++..++.+.++ .+.....++.+...+|++. +..+...+.+.....|
T Consensus 76 in--~~~e~f~~~~~~~~~l~~~~~~~~~~~~~Ls~~~l~~a~~~~~~~~~~~~S~~~q~d~~-~s~c~~~~~d~~m~~~ 152 (872)
T KOG4814|consen 76 IN--ENVESFSNEEKTEFKKLTFEFYLVNFQLYLSENDLDTANIYTAKVNITDNSKYMDADLL-IELCRMIYNSTVMLKE 152 (872)
T ss_pred HH--HhHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHhhhhhhhhhcCCchhhhhhhhhHHH-HHHHHhhcchHhHHhh
Confidence 99 99999999998776544 333333322222 4556668899999999999 5555555555555556
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC---cH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG---EY 291 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~---~~ 291 (733)
-....++-+++|+|..+.+..+ |.+.-.|+.+++......+ +....++...+.+.++..|..+| .+
T Consensus 153 ~~~~~~~l~~~n~g~~t~k~~k---y~e~~~~~~~s~~~~~~~k--------~s~~~em~n~v~~~~~~~~~~~~~d~y~ 221 (872)
T KOG4814|consen 153 INNPETQLVDVNIISFLKDVEK---YLELPVENLKSHTDYSNLK--------YSVLIFMANCLVEGHPQASELEQCDHYL 221 (872)
T ss_pred hhChHHHHHHHHHhhhhhhhhh---hhhhHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHhhhhhcccCCcchHH
Confidence 5667788999999999999999 9999999999999854432 22226677789999999999887 46
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
+.|...|..+.+. ..-...++.+.++....|..++.+-...+.+...+++..++.+..++.+.+.. ..++-.+.
T Consensus 222 ~~a~n~v~~~~~~-----~~l~~~l~~~~~i~~~~et~~e~l~~~Vm~V~~~~~~~~~~~~i~~l~~~~~~~s~~~~~~~ 296 (872)
T KOG4814|consen 222 SLLQNEYPNKVDP-----FILAINLTKRRNIVNPAETIEEILMRMIMSVDVISNFQAVIASINDLSKMNTKFSIVCLDYL 296 (872)
T ss_pred HHhcchhhhhcch-----hhcCccHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 6777666665442 11223459999999999999988888888777778888888888887776655 33333332
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHhhhHHHHHHHhhcchh----HHHh-hHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDG-VSEAAVKLRAKAVAELVSDERVLALFVGDAA----AKER-IAMHAVLW 444 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp-~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~----~~~~-~~~~~llW 444 (733)
...++.++... ++-. +.+. .-++....++.++|+|+++|..+++ +++. +|+|++||
T Consensus 297 ---------------~i~~~~~~~~~-~~~g~~~~s--r~l~~~~~~L~~dE~I~e~F~~~~t~~~lTkE~~~~iH~iLW 358 (872)
T KOG4814|consen 297 ---------------LINKLNSKNDS-KFLGKAICS--RFLITTQSKLMNDEEIAESFENFSTQMELTKEAISCIHTLLW 358 (872)
T ss_pred ---------------HHHHHhhhccc-chhhhhhhh--HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11111112211 1100 0111 1123334777889999999985555 6654 69999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
|.+..+|+.++|..|++||.++|.++|.|.++ .+.+|++|+++.||++|.|+|+|+|++.+|++.|| +++++++++++
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~-~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS-DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999999999999999999999999887 58899999999999999999999999999999999 99999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCC-------------Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDF-------------TT-DFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEV 589 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~-------------~~-~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~ 589 (733)
.+.+|+.++|+.++.++.+..+. .| ..|.+..+++..+++.-++.++++.|.. ++.+ ..++.
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~~~n~Q~I~sE~~~~~l~~-~~~~---q~~v~ 513 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLMIFNSQTISSESSSQTLSI-LYTL---QMIVK 513 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHHHHhcchhhhcchHHHHHH-HhHH---HHHHH
Confidence 99999999999999999877643 23 4788889999999999999999999998 5555 56677
Q ss_pred HHHHHHHHHH----HhhcCChh------HHHHHHHHHHHHhhhcccCccCCCc----cccchhhHHHHhhhhhhhhhccc
Q 004720 590 VVLRTIVTIL----TQETGNES------EVLKYMKRAHARTSEIGANCFFGTE----EAGRREQNWLAVMSWNFGTNCGK 655 (733)
Q Consensus 590 ~~lR~li~l~----~~~~~~~~------~~l~~~~~A~~~l~~~~~~~~~~~~----~~~~~E~~Wf~~~awN~a~~~~~ 655 (733)
+...|+++.+ +.+++..+ ..++++++++ + ++||.+ +++.+|++||++||||+||+|.|
T Consensus 514 ~~~~e~L~F~L~~~~~~~~~~~ka~e~~~~~~Cln~~~---~-----~~FGe~~~~~E~~~nE~~WFa~T~WNLav~C~K 585 (872)
T KOG4814|consen 514 VSEEEPLEFFLNYLPTVQKLLQKAVEFLKTVKCLNQLP---P-----DVFGEAIYQQEVAVNEIEWFASTSWNLAVKCLK 585 (872)
T ss_pred HHHHhHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcC---C-----chhhhHHHHHHhhhhHHHHHHHHHHHHHHHhcc
Confidence 7766766664 33443333 3567777776 2 458888 89999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHccccCCc----hhhhHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Q 004720 656 EKKYELCMEFLRLASEFYGIRVDGQ----VEENSITVCKSLILTVSAMIASENQKQIALMNNEVKQALELLD 723 (733)
Q Consensus 656 ~~~~~~~~~f~~la~~~~~l~p~~~----~~~~~~~~c~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (733)
++.++.+++||.||++|+++||.|+ ...+++++| |+|+ +|++||++||+++..+|++-+-|.|.
T Consensus 586 d~~~e~~~EF~~L~~~f~~~ip~D~~~~~~~~I~R~~~--L~~~--~~IaLEk~~K~~~~~~Q~~~~se~L~ 653 (872)
T KOG4814|consen 586 DQSCESISEFPQLCIQFIDLIPVDDFTMYHFTIWRFKA--LILQ--LIIALEKAKKDQHQKDQDIYESEELV 653 (872)
T ss_pred chhHHHHHHHHHHHHHHHccCCcccccchhhHHHHHHH--HHHH--HHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999998 456677777 6666 99999999999999999988777764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=248.21 Aligned_cols=262 Identities=21% Similarity=0.221 Sum_probs=204.0
Q ss_pred HHHHccCHHHHHHHHHHHHhhh-hcCchhHHHHHHHHHHHhHHHHhcC-CCCCHHHHHHHHHHHHHHHhc-CCCCcccch
Q 004720 189 TAWEVLEQNLAITLLNRAKCLL-FGLFEHYKSLANQYLTFAKSALSKN-ETNSLNDALKLMNEALELCEK-GLGEARTRE 265 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~-~~~~~~~~~La~~~~~~G~~~~~~~-~~~~~e~A~~~l~~Alel~~~-~~~~~~~~~ 265 (733)
.+|++||++.|.+|++|+..+. ...|+.+++|+++||++|+++++++ + |++|++|+++|++++++ +++...+.
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~---~~~a~~wL~~a~~~l~~~~~~~~~~~- 77 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK---YEEAVKWLQRAYDILEKPGKMDKLSP- 77 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHhhhhccccCC-
Confidence 6899999999999999999998 6699999999999999999999999 8 99999999999999988 44443332
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCc---HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGE---YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~---~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
+..++|.++++.|+++|++++. +++|.++++.+++. .+.+|...+++++++.+.++.++..+.+.+||.+
T Consensus 78 ---~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 78 ---DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ---cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3378999999999999999985 55677777778765 4567888899999999988899999999888877
Q ss_pred cC---CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCch-H-HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 343 KG---IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS-A-KAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 343 ~~---~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~-~-~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
.+ .+...+++.+..+.++....+...+.+++. .|+.++ + +.++.++++++....+++.+. ..|++.+.+.
T Consensus 151 ~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~---~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~--~~~i~~l~~~ 225 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL---NRFKSSEDQWLEKLVLTRVLLTTQSKDLSS--SEKIESLEEL 225 (278)
T ss_pred cccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH---HHhCCChhHHHHHHHHHHHHHHcCCccccc--hhHHHHHHHH
Confidence 65 555556677777777776666666666554 445555 2 788999999985233222111 1344455444
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSML 468 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~ 468 (733)
.. .+.+.+.++-..++..++|+++||+|..+|++|+|++|++||+.|++
T Consensus 226 ~~--~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 226 LS--IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33 33333333333457899999999999999999999999999999985
|
It is also involved in sporulation []. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=216.93 Aligned_cols=370 Identities=14% Similarity=0.053 Sum_probs=293.1
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
++-+...||.|-+.|+++.|++.|+.|+++-+. +.+.++..|.+++.+|+...|..++..|++++|
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~--------------fida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK--------------FIDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch--------------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 356677999999999999999999999987542 246777889999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
... -+.-++|.-+...|. .++|...|.+|++. ++. -+-+|.+||.++..+|+.
T Consensus 182 ~l~-------ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~---qp~--------------fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 182 DLY-------CARSDLGNLLKAEGR---LEEAKACYLKAIET---QPC--------------FAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred chh-------hhhcchhHHHHhhcc---cchhHHHHHHHHhh---CCc--------------eeeeehhcchHHhhcchH
Confidence 743 345677888888899 99999999999998 542 133799999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
-.|+..|+.+.++ .+..+.+++..+.+|...+.||+|+..+.+.+...|+....+-+++..|++.+. +.|+.+++
T Consensus 235 ~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 235 WLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred HHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 9999999999987 567888889999999999999999999988887677777777788899988887 99999998
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHH-HHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHA-VLWNCASI 449 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~-llW~~g~~ 449 (733)
+.+ +.+|..++++-.-+..+++..+..+.+++.. ..-...|-|+ -+.|.|++
T Consensus 311 ral------------------------~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn---kaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 311 RAL------------------------ELQPNFPDAYNNLANALKDKGSVTEAVDCYN---KALRLCPNHADAMNNLGNI 363 (966)
T ss_pred HHH------------------------hcCCCchHHHhHHHHHHHhccchHHHHHHHH---HHHHhCCccHHHHHHHHHH
Confidence 653 3444444443223333344333233333322 1111122221 34478999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 450 LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 450 ~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
+-++|++++|..+|.++|+++| ..|..+.|++..|-+.|++++|+..|++|++++| -....-.+...|...|
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p-------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFP-------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHhccchHHHHHHHHHHhhCh-------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999987 5677899999999999999999999999999999 5566667999999999
Q ss_pred CHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 529 DQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+.+.|++||.+.....+.-.|...--+.+....||.+.|+.+.+..|. +..|
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk-lkPD 488 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK-LKPD 488 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc-cCCC
Confidence 999999999999887543334333334566679999999999999888 4344
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=191.90 Aligned_cols=379 Identities=15% Similarity=0.109 Sum_probs=280.8
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+..+++.|+.++..|++..|...|-.|++..|..| -.+..||.+|++.|+-.-|+.+++|.+++.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--------------~aifrRaT~yLAmGksk~al~Dl~rVlelK 102 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--------------QAIFRRATVYLAMGKSKAALQDLSRVLELK 102 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--------------HHHHHHHHHHhhhcCCccchhhHHHHHhcC
Confidence 467789999999999999999999999999987655 234567999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh---hhhhhcHHHHHHHHHHHHhc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET---TELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~---~~~~el~~~~l~~La~~yl~ 287 (733)
|++. .+..+.|..++++|. ++.|..-|.+.++- .+.+....+.. .-..+.+ .++.....+..
T Consensus 103 pDF~-------~ARiQRg~vllK~Ge---le~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~--~l~~ql~s~~~ 167 (504)
T KOG0624|consen 103 PDFM-------AARIQRGVVLLKQGE---LEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHW--VLVQQLKSASG 167 (504)
T ss_pred ccHH-------HHHHHhchhhhhccc---HHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHH--HHHHHHHHHhc
Confidence 9854 247788999999999 99999999998887 54332211111 1112222 45555666788
Q ss_pred cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh-hccCCchHHHHhHHHHHHHhchhhhH
Q 004720 288 KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV-EIKGIPECIWVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 288 ~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l-~~~~~~~~~~ls~~~ly~~~~~~~a~ 366 (733)
.|++.-|+.++..++++. +=+.+..-++.+||..-|++..||-.++..- ...|+++.+| .+..+++..+.
T Consensus 168 ~GD~~~ai~~i~~llEi~----~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd---- 238 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ----PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGD---- 238 (504)
T ss_pred CCchhhHHHHHHHHHhcC----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhh----
Confidence 899999999999998852 2333444889999999999999999998765 4456777765 33343432222
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAV--KLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l--~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
....+..++.++ +.+||+..|+ |++.+.+.+.. .
T Consensus 239 -----------------~~~sL~~iRECL--KldpdHK~Cf~~YKklkKv~K~l---------e---------------- 274 (504)
T KOG0624|consen 239 -----------------AENSLKEIRECL--KLDPDHKLCFPFYKKLKKVVKSL---------E---------------- 274 (504)
T ss_pred -----------------HHHHHHHHHHHH--ccCcchhhHHHHHHHHHHHHHHH---------H----------------
Confidence 134455666787 7999999987 66655443321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
.+....+.++|.+|++-++..|+..|... +-+-..++.++.||..-+++.+|+..|.+++..+| ++.+..-++..
T Consensus 275 -s~e~~ie~~~~t~cle~ge~vlk~ep~~~---~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 275 -SAEQAIEEKHWTECLEAGEKVLKNEPEET---MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred -HHHHHHhhhhHHHHHHHHHHHHhcCCccc---ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 45666789999999999999999998754 34556789999999999999999999999999999 79999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTIL 599 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~ 599 (733)
|+...++|.||..|++.....+++.. ..-+..-|.+...+.. .....++|. ...+ ..-.++..++|.+.+--
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~sn~~-~reGle~Akrlkkqs~-kRDYYKILG-VkRn-AsKqEI~KAYRKlAqkW 422 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNESNTR-AREGLERAKRLKKQSG-KRDYYKILG-VKRN-ASKQEITKAYRKLAQKW 422 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHHHhc-cchHHHHhh-hccc-ccHHHHHHHHHHHHHhc
Confidence 99999999999999999998775443 1222233332111111 133445555 2111 22456889999887664
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-19 Score=210.01 Aligned_cols=367 Identities=12% Similarity=-0.012 Sum_probs=238.0
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
...+......|+.+++.|+|+.|+.+|++|++..|. ..++.+++.++...|++++|+.+++++++
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------------PVYYSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344566778999999999999999999999987541 13577889999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHH---------------------------hcCCCCc
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELC---------------------------EKGLGEA 261 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~---------------------------~~~~~~~ 261 (733)
++|..++ ++++.|..+...|+ +++|+..|+.+..+- +..+.+.
T Consensus 189 l~p~~~~-------a~~~~a~a~~~lg~---~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~ 258 (615)
T TIGR00990 189 LDPDYSK-------ALNRRANAYDGLGK---YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENL 258 (615)
T ss_pred cCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9987664 47788888888888 898887776554320 1111000
Q ss_pred cc------------------------------ch----------------hhh-------------hhhhcHHHHHHHHH
Q 004720 262 RT------------------------------RE----------------ETT-------------ELKGLKFKTLRFIS 282 (733)
Q Consensus 262 ~~------------------------------~~----------------~~~-------------~~~el~~~~l~~La 282 (733)
.. .. .+. ...+.....+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 259 PSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred CCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 00 00 000 00011122455556
Q ss_pred HHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch
Q 004720 283 AIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 283 ~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
.+|...|++++|+..++.+... .+..+..++..+.++...|++++|+..+...+...+....++...+.+|...+.
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIEL----DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 6666666666666666655553 233444455556666666666666666655553333333444444444444333
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAV 442 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~l 442 (733)
...|+..+++.+ +..|++...+...+.....+...+..+..+. ...+.......+
T Consensus 415 ---------------------~~~A~~~~~kal--~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~--~al~~~P~~~~~ 469 (615)
T TIGR00990 415 ---------------------FAQAGKDYQKSI--DLDPDFIFSHIQLGVTQYKEGSIASSMATFR--RCKKNFPEAPDV 469 (615)
T ss_pred ---------------------HHHHHHHHHHHH--HcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHhCCCChHH
Confidence 233444444554 4566555555445555544444444444443 111111122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|..+...|+|++|++.|+.++.+.|.....+.+...++...+.+|...|++++|.+.++++++++| +......+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 5568999999999999999999999998864322233444555555666678999999999999999999 777788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.++.+.|++++|++.++....+.....+
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999887654333
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-17 Score=199.62 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=136.4
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
-.+..|+.+++.|+++.|...|.+++...|. . .......+.+++.+|+++.|+..+.++.+..|..
T Consensus 24 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 89 (899)
T TIGR02917 24 SLIEAAKSYLQKNKYKAAIIQLKNALQKDPN--------D------AEARFLLGKIYLALGDYAAAEKELRKALSLGYPK 89 (899)
T ss_pred HHHHHHHHHHHcCChHhHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh
Confidence 3567799999999999999999999976431 0 1223334556666666666666666666554432
Q ss_pred ch----------------------------hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 214 FE----------------------------HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 214 ~~----------------------------~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
+. .....+.+++..|..+...|+ +++|..+|+++++. +|.+.
T Consensus 90 ~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~---~~~~~---- 159 (899)
T TIGR02917 90 NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQ---LELAQKSYEQALAI---DPRSL---- 159 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CCCCh----
Confidence 21 112344567778888888888 99999999998887 43221
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
..+..++.++...|++++|+..++.+.+. .+.++..+++++.++...|++++|+..+...+...|.
T Consensus 160 ----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 160 ----------YAKLGLAQLALAENRFDEARALIDEVLTA----DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred ----------hhHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 15666788888888888888888777764 3455666777888888888888888888777754454
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
....+...+..+...+. +.|...+..+
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 253 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADAL 253 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555666666666555 5555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=195.46 Aligned_cols=393 Identities=14% Similarity=0.102 Sum_probs=279.8
Q ss_pred hHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 004720 106 NLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIA 185 (733)
Q Consensus 106 ~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~ 185 (733)
++-.+++.++.+..+. ..++..-.++..+.+.|+.+++..+|..|+.-|+.|++.+++. ..++..
T Consensus 24 ~~~~~~~e~~~~~~~~-s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~--------------a~yy~n 88 (486)
T KOG0550|consen 24 KVDPTEKETAATSPEY-SFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN--------------ASYYSN 88 (486)
T ss_pred cccchhcchhccCccc-cccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc--------------hhhhch
Confidence 3345556666555333 3456667799999999999999999999999999999998741 257778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
||..++..|+|+.|...+++...+++..++. ....|+++...++ ..+|...|+ .++
T Consensus 89 RAa~~m~~~~~~~a~~dar~~~r~kd~~~k~-------~~r~~~c~~a~~~---~i~A~~~~~------~~~-------- 144 (486)
T KOG0550|consen 89 RAATLMMLGRFEEALGDARQSVRLKDGFSKG-------QLREGQCHLALSD---LIEAEEKLK------SKQ-------- 144 (486)
T ss_pred hHHHHHHHHhHhhcccchhhheecCCCcccc-------ccchhhhhhhhHH---HHHHHHHhh------hhh--------
Confidence 8999999999999999999999999988764 5566777777777 666664444 101
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH---HHHHHHHHhcCChHHHHHHHHHhh-h
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP---VLAMKAWLGLGRYNEAELELRGMV-E 341 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~---~lk~~il~~~g~~deAi~~l~~~l-~ 341 (733)
+| ++.+.+..+.+..+ .....|+.. +++.+|+...|++++|+.+...++ .
T Consensus 145 ------------------~~-------~~anal~~~~~~~~-s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 145 ------------------AY-------KAANALPTLEKLAP-SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred ------------------hh-------HHhhhhhhhhcccc-cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 00 12222222222111 011225433 899999999999999999988888 5
Q ss_pred ccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHhhh
Q 004720 342 IKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAV--KLRAKAVAELVS 419 (733)
Q Consensus 342 ~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l--~~ka~~l~~l~~ 419 (733)
...+.+.++|+....|.....+.+..++.. -+ ..+|++.+.- ....++++
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~q----------------------al--~ldpdh~~sk~~~~~~k~le---- 250 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQ----------------------AL--RLDPDHQKSKSASMMPKKLE---- 250 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhh----------------------hh--ccChhhhhHHhHhhhHHHHH----
Confidence 555778889999998887777777777763 33 4566553321 11111111
Q ss_pred HHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 420 DERVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
-|. .|+..|+.|+|..|.+.|+.+|.++|.+. ..++++|.|+|.+++.+|...
T Consensus 251 -----------------------~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~---~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 251 -----------------------VKKERGNDAFKNGNYRKAYECYTEALNIDPSNK---KTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred -----------------------HHHhhhhhHhhccchhHHHHHHHHhhcCCcccc---chhHHHHHHhHhhhcccCCch
Confidence 122 89999999999999999999999999886 489999999999999999999
Q ss_pred HHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004720 499 RAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF--TTDFLSLAAHEAVACQALSVAVAALSNLL 575 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~--~~~lL~la~~~a~~~~~~~~a~~aL~~Ll 575 (733)
+|+..|++|+.+|| .+...+.++++++..+++++|++++++..+.... ....|.-+ +++++..+. +.-.++|
T Consensus 305 eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A-~~aLkkSkR----kd~ykil 379 (486)
T KOG0550|consen 305 EAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREA-QLALKKSKR----KDWYKIL 379 (486)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH-HHHHHHhhh----hhHHHHh
Confidence 99999999999999 8899999999999999999999999999887643 12234333 444442222 3334455
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHH-Hhh-cCCh---hHHHHHHHHHHHHhhhcc
Q 004720 576 NFYTSGKPMPTKEVVVLRTIVTIL-TQE-TGNE---SEVLKYMKRAHARTSEIG 624 (733)
Q Consensus 576 ~~~~~~~~~~~~~~~~lR~li~l~-~~~-~~~~---~~~l~~~~~A~~~l~~~~ 624 (733)
. .+.... .+++..+.|.+.-.. ++. .++. +..++-.-.|+.++++..
T Consensus 380 G-i~~~as-~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~ 431 (486)
T KOG0550|consen 380 G-ISRNAS-DDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPM 431 (486)
T ss_pred h-hhhhcc-cchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHH
Confidence 4 222211 345778888774443 444 3441 224556677888887753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-17 Score=201.73 Aligned_cols=390 Identities=15% Similarity=0.117 Sum_probs=241.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
..+.++...|++++|+..++++....|.... .++.+|..+...|+ +++|..++++++.. ++.+
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~---~~~A~~~~~~~~~~---~~~~---- 566 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLR-------AILALAGLYLRTGN---EEEAVAWLEKAAEL---NPQE---- 566 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---Cccc----
Confidence 3345555555555555555555555444322 23444444445555 56666666655554 2211
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
...+..++..|...|++++|+..++.+... .+.+|..++..+.++...|++++|+..+..++...+
T Consensus 567 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 567 ----------IEPALALAQYYLGKGQLKKALAILNEAADA----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred ----------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 113445666666666666666666666553 234455556666666666666666666666653333
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERV 423 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v 423 (733)
.....+...+..|...+. +.|...++ +.+ +..|++...+...+..+......+..
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLK----------------------RAL--ELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHH----------------------HHH--hcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333334444555544433 44444444 443 34444444443333343333333333
Q ss_pred HHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHH
Q 004720 424 LALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEY 503 (733)
Q Consensus 424 ~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~ 503 (733)
.+.+. ........-+..+...|..++..|+|++|+++|+.++...|.+ ....+++.+|.+.|++++|.+.
T Consensus 689 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 689 KKIAK--SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HHHHH--HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHH
Confidence 33322 1111001111223347999999999999999999999887644 3567899999999999999999
Q ss_pred HHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004720 504 ITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGK 582 (733)
Q Consensus 504 ~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~ 582 (733)
++++++.+| ++...+.+..++...|++++|++.++++....+.++..+...+......|+ +.|+..++..++....+
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~- 836 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI- 836 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC-
Confidence 999999999 899999999999999999999999999998877777766665677777888 66888888888843322
Q ss_pred CCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHHhhhhhhhhhcccccchhhH
Q 004720 583 PMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELC 662 (733)
Q Consensus 583 ~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~ 662 (733)
+. ++.++..+ ....|+.++.++++++|.+.-+.. ..+-+|+|.-..+.+.++.+
T Consensus 837 --~~----~~~~~~~~-~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 837 --PA----ILDTLGWL-LVEKGEADRALPLLRKAVNIAPEA-------------------AAIRYHLALALLATGRKAEA 890 (899)
T ss_pred --cH----HHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCC-------------------hHHHHHHHHHHHHcCCHHHH
Confidence 22 22233222 233577889999999999742210 12445677667777777777
Q ss_pred HHHHH
Q 004720 663 MEFLR 667 (733)
Q Consensus 663 ~~f~~ 667 (733)
.+.+.
T Consensus 891 ~~~~~ 895 (899)
T TIGR02917 891 RKELD 895 (899)
T ss_pred HHHHH
Confidence 66554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-17 Score=201.05 Aligned_cols=408 Identities=14% Similarity=0.049 Sum_probs=276.9
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchh
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEH 216 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~ 216 (733)
..|..++..|+++.|...|++|+...|. + .+.+...+.++..+|++++|+.++++++.+.|..+..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~--------~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK--------D------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 3488999999999999999999986531 1 2445566888999999999999999999998875432
Q ss_pred H---HHHH----HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 217 Y---KSLA----NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 217 ~---~~La----~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
. ..+. ..+...|..++..|+ +++|+..|++++++ +|.+. .++..||.+|...|
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~---~~eA~~~~~~Al~~---~P~~~--------------~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANN---LAQAERLYQQARQV---DNTDS--------------YAVLGLGDVAMARK 399 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHCC
Confidence 1 1111 123355888999999 99999999999998 54221 26778899999999
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHH------------------------------------------HHHhcC
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASLPVLAMK------------------------------------------AWLGLG 327 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~------------------------------------------il~~~g 327 (733)
++++|+.+++.+.+.. +.++......+. ++...|
T Consensus 400 ~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 400 DYAAAERYYQQALRMD----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 9999999999998853 344443332223 333445
Q ss_pred ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHH
Q 004720 328 RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAV 407 (733)
Q Consensus 328 ~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l 407 (733)
++++|+..+.+.+...|....++...+.+|...++ ...|..++++++ +..|+++..+
T Consensus 476 ~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~---------------------~~~A~~~l~~al--~~~P~~~~~~ 532 (1157)
T PRK11447 476 KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ---------------------RSQADALMRRLA--QQKPNDPEQV 532 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------------HHHHHHHHHHHH--HcCCCCHHHH
Confidence 56666666655553333333344445555544444 233344444444 3445555444
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcch---hHHHh-----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhh
Q 004720 408 KLRAKAVAELVSDERVLALFVGDA---AAKER-----IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRIL 479 (733)
Q Consensus 408 ~~ka~~l~~l~~~e~v~~~~~g~~---~~~~~-----~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~ 479 (733)
+..+..+.+....+...+.+..-. ..... ..........+..+...|++++|++.++ ..|.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~------- 601 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPP------- 601 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCC-------
Confidence 444433333333333333332100 00000 0001123467899999999999999987 2343
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 004720 480 RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEA 558 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a 558 (733)
...++..++.+|.+.|++++|++.|+++++.+| ++...+.+..++...|++++|+++++.+....+.+++.....+...
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 335678999999999999999999999999999 8999999999999999999999999999887766777655555666
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 004720 559 VACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHA 618 (733)
Q Consensus 559 ~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~ 618 (733)
.+.|+.+.|+..++.+++....+.+.. ....++|-+.++ ....|+.++.+.+|++|..
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~-~~a~~~~~~a~~-~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSM-ESALVLRDAARF-EAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcch-hhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh
Confidence 789999999999999998543332211 122333333333 3445788889999999975
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=188.66 Aligned_cols=319 Identities=15% Similarity=0.074 Sum_probs=210.6
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCC----------hHHHHH---------HHH-HHHHHHHHHHH
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISD----------SDERKL---------LLD-INIARSRTAWE 192 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~----------~~e~~~---------~l~-~l~~rA~~a~~ 192 (733)
.-++..|-.....|+...|..||..|+.+.|.++-.+++. ++...- .|. ....-+.+...
T Consensus 151 da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~ 230 (966)
T KOG4626|consen 151 DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNA 230 (966)
T ss_pred HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhh
Confidence 3445556666667777888888888887766433111110 000000 011 12233445556
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
+|+..+|++.|.+|..++|.+++ +|+|+|..+...+. |+.|+..|++|+.+ .|+
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~d-------AYiNLGnV~ke~~~---~d~Avs~Y~rAl~l---rpn------------- 284 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLD-------AYINLGNVYKEARI---FDRAVSCYLRALNL---RPN------------- 284 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchH-------HHhhHHHHHHHHhc---chHHHHHHHHHHhc---CCc-------------
Confidence 67777777777777777776554 37777777777777 77777777777666 322
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls 352 (733)
-+-++-+||.+|.++|..|-|+.+|+.+... .+.+|.++-..+.++...|+.+||...+.+.+..-++-.+.--+
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 2335666677777777777777777776664 34566666666666666677777777776666322222222234
Q ss_pred HHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 353 AVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 353 ~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
+++.|.+.+. +.|...++ ++ .+.+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~---------------------------------------~a------------l~v~p--- 385 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYL---------------------------------------KA------------LEVFP--- 385 (966)
T ss_pred HHHHHHHhccchHHHHHHH---------------------------------------HH------------HhhCh---
Confidence 5555544433 22222222 11 01010
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
-+...--|.|.++-++|++++|+..|+.++.+.| +.|..+.|++..|-..|+.+.|+..|.+|+.++
T Consensus 386 ------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 386 ------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred ------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 1111222578999999999999999999999965 788999999999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
| ....+-.++.+|...|+..+||+.|++..++.+..||
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9 7777888999999999999999999999999877777
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-17 Score=203.15 Aligned_cols=396 Identities=12% Similarity=0.033 Sum_probs=274.4
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHH--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDER--KLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~--~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
.....|..++..|+++.|..+|++|++..+...... ..... ...+..+..++..+...|++++|+..+++++.+.|
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~--~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD--KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh--HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 345678999999999999999999998654210000 00000 00122344568888999999999999999999998
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh-----------------------
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT----------------------- 268 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~----------------------- 268 (733)
..+. +++.+|..+...|+ +++|+.+|++++++ .|.+........
T Consensus 383 ~~~~-------a~~~Lg~~~~~~g~---~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 383 TDSY-------AVLGLGDVAMARKD---YAAAERYYQQALRM---DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred CCHH-------HHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 7653 57788999999999 99999999999998 443321100000
Q ss_pred -----hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc-
Q 004720 269 -----ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI- 342 (733)
Q Consensus 269 -----~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~- 342 (733)
....+....+..++.++...|++++|+.+++.+.+. .+.+|...+..+.++...|++++|+..+++.+..
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 001122345667889999999999999999999986 4677888899999999999999999999998854
Q ss_pred cCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHH
Q 004720 343 KGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDE 421 (733)
Q Consensus 343 ~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e 421 (733)
++.+...+ ..+..+...++ +.|...+.++.. ...+ .....+..+.. . ..+...+..+......+
T Consensus 526 P~~~~~~~-a~al~l~~~~~~~~Al~~l~~l~~----~~~~--~~~~~l~~~l~---~-----~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 526 PNDPEQVY-AYGLYLSGSDRDRAALAHLNTLPR----AQWN--SNIQELAQRLQ---S-----DQVLETANRLRDSGKEA 590 (1157)
T ss_pred CCCHHHHH-HHHHHHHhCCCHHHHHHHHHhCCc----hhcC--hhHHHHHHHHh---h-----hHHHHHHHHHHHCCCHH
Confidence 44444433 33333443333 566666553310 0000 00011111110 0 00112333333333333
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQ 501 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~ 501 (733)
..++++..+.. -..+..+.|..+.+.|+|++|++.|+.++...|.+ ...+.+++.+|...|++++|+
T Consensus 591 eA~~~l~~~p~------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~-------~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 591 EAEALLRQQPP------STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN-------ADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHH
Confidence 34444331111 11123358999999999999999999999988755 357899999999999999999
Q ss_pred HHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004720 502 EYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT------DFLSLAAHEAVACQALSVAVAALSNL 574 (733)
Q Consensus 502 e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~------~lL~la~~~a~~~~~~~~a~~aL~~L 574 (733)
+.++++.+.+| ++..+..+..++...|++++|++.++.+....+.+| .++...+......|+.+.|+..++..
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999 888888899999999999999999999988654333 24445578888999999999888777
Q ss_pred Hh
Q 004720 575 LN 576 (733)
Q Consensus 575 l~ 576 (733)
+.
T Consensus 738 l~ 739 (1157)
T PRK11447 738 MV 739 (1157)
T ss_pred Hh
Confidence 64
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-16 Score=181.83 Aligned_cols=370 Identities=15% Similarity=0.039 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+..++..+...|+|+.|+..|++++.+.|. + ..|+++|.+++..|+ +++|+..+++++++ +|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~-------~~~~n~a~~~~~l~~---~~~Ai~~~~~al~l---~p~ 192 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P-------VYYSNRAACHNALGD---WEKVVEDTTAALEL---DPD 192 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h-------HHHHHHHHHHHHhCC---HHHHHHHHHHHHHc---CCC
Confidence 345667788999999999999999999999875 2 248899999999999 99999999999998 543
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcH------------------------
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASL------------------------ 315 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~------------------------ 315 (733)
+ .+++..+|.+|...|+|++|+..+..+.... +.++..
T Consensus 193 ~--------------~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 193 Y--------------SKALNRRANAYDGLGKYADALLDLTASCIID----GFRNEQSAQAVERLLKKFAESKAKEILETK 254 (615)
T ss_pred C--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 2378889999999999999987766554321 111100
Q ss_pred ------HHHHHHHH------------------------------------HhcCChHHHHHHHHHhhhcc---CCchHHH
Q 004720 316 ------PVLAMKAW------------------------------------LGLGRYNEAELELRGMVEIK---GIPECIW 350 (733)
Q Consensus 316 ------~~lk~~il------------------------------------~~~g~~deAi~~l~~~l~~~---~~~~~~~ 350 (733)
..+.+..+ ...++|++|+..+...+... +.....+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~ 334 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL 334 (615)
T ss_pred CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 00000000 00123445555544444211 1111112
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
...+.+|...++ ...|+..+++.+ +..|+....+...+.....+...+..+..+.
T Consensus 335 ~~lg~~~~~~g~---------------------~~eA~~~~~kal--~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~-- 389 (615)
T TIGR00990 335 NLRGTFKCLKGK---------------------HLEALADLSKSI--ELDPRVTQSYIKRASMNLELGDPDKAEEDFD-- 389 (615)
T ss_pred HHHHHHHHHcCC---------------------HHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 222222222222 245555555665 5667666666556655555544444544443
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+..........++.+.|..++..|+|++|+.+|+.++...|.+ ...+.++|.+|.++|++++|+..++++++.
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1111111112345568999999999999999999999988754 345789999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh----H---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT----D---FLSLAAHEAVACQALSVAVAALSNLLNFYTSGK 582 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~----~---lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~ 582 (733)
.| ++...+....++...|++++|++++++...+.+... . ++..+.......++.+.|+..++..++. +
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l---~- 538 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII---D- 538 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---C-
Confidence 99 788888899999999999999999999888764321 1 2222222333357888888888888773 2
Q ss_pred CCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 004720 583 PMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTS 621 (733)
Q Consensus 583 ~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~ 621 (733)
|.... ++-.+.++ ....|+.++.+++|++|.+...
T Consensus 539 --p~~~~-a~~~la~~-~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 --PECDI-AVATMAQL-LLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred --CCcHH-HHHHHHHH-HHHccCHHHHHHHHHHHHHHhc
Confidence 22121 11122222 2335778899999999987543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-16 Score=184.21 Aligned_cols=331 Identities=10% Similarity=0.040 Sum_probs=246.4
Q ss_pred hhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHH
Q 004720 139 GVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYK 218 (733)
Q Consensus 139 G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~ 218 (733)
....+..|+++.|...++.++...+. . .+.+...+.+....|+++.|+..++++..+.|..+..
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~--------~------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a-- 112 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN--------G------RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPED-- 112 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC--------c------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHH--
Confidence 45667889999999999888876542 1 1333334556668999999999999999999987753
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
++.+|..+...|+ +++|+..|++++.+ .|.+. ..+..++.+|...|++++|+..+
T Consensus 113 -----~~~la~~l~~~g~---~~~Ai~~l~~Al~l---~P~~~--------------~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 113 -----VLLVASVLLKSKQ---YATVADLAEQAWLA---FSGNS--------------QIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred -----HHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCcH--------------HHHHHHHHHHHHCCChHHHHHHH
Confidence 6778888889999 99999999999998 54321 26778899999999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
+.+... .+.++..++ .+..+...|++++|+..+..++...+ .........+..+...++
T Consensus 168 ~~~~~~----~P~~~~a~~-~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~--------------- 227 (656)
T PRK15174 168 RTQAQE----VPPRGDMIA-TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK--------------- 227 (656)
T ss_pred HHHHHh----CCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC---------------
Confidence 877654 234444433 34468888999999999988774432 222222222333333332
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
...+...+++.+ ...|++... +.+.|..+++.|+|+
T Consensus 228 ------~~eA~~~~~~al--~~~p~~~~~------------------------------------~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 228 ------YQEAIQTGESAL--ARGLDGAAL------------------------------------RRSLGLAYYQSGRSR 263 (656)
T ss_pred ------HHHHHHHHHHHH--hcCCCCHHH------------------------------------HHHHHHHHHHcCCch
Confidence 123333333444 344533221 224789999999999
Q ss_pred H----HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHH
Q 004720 458 A----SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEG 532 (733)
Q Consensus 458 ~----A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~ 532 (733)
+ |+.+|+.++...|.+ +.++.+++..+...|++++|+.+++++++++| ++...+.+..++...|++++
T Consensus 264 eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6 899999999988744 46789999999999999999999999999999 88888899999999999999
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 533 AINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 533 Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
|+..++.+....+..+......+......|+.+.|+..++..++..+.+
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999998766666544444455567899999999999998854443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-15 Score=175.23 Aligned_cols=294 Identities=12% Similarity=0.061 Sum_probs=233.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
+......|+++.|...+..++...|..+. .++.+|...+..|+ +++|+..|++++.+ +|.+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-------~l~~l~~~~l~~g~---~~~A~~~l~~~l~~---~P~~~----- 110 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRD-------LLRRWVISPLASSQ---PDAVLQVVNKLLAV---NVCQP----- 110 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchh-------HHHHHhhhHhhcCC---HHHHHHHHHHHHHh---CCCCh-----
Confidence 45566899999999999999999988764 48889999999999 99999999999998 65332
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
..+..++.+|...|++++|+..++.+.+. .+.++..+...+.++...|++++|+..+..++...+.+
T Consensus 111 ---------~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 111 ---------EDVLLVASVLLKSKQYATVADLAEQAWLA----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 26888999999999999999999999986 46778888999999999999999999998877444444
Q ss_pred hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHH
Q 004720 347 ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLAL 426 (733)
Q Consensus 347 ~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~ 426 (733)
...+..... +...++ ...|..++++++ +..|.+...
T Consensus 178 ~~a~~~~~~-l~~~g~---------------------~~eA~~~~~~~l--~~~~~~~~~-------------------- 213 (656)
T PRK15174 178 GDMIATCLS-FLNKSR---------------------LPEDHDLARALL--PFFALERQE-------------------- 213 (656)
T ss_pred HHHHHHHHH-HHHcCC---------------------HHHHHHHHHHHH--hcCCCcchh--------------------
Confidence 444333222 222222 122333333443 222211000
Q ss_pred hhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHH----HHH
Q 004720 427 FVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDR----AQE 502 (733)
Q Consensus 427 ~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~----A~e 502 (733)
.....|..+.+.|+|++|+..|..++...|.+ ..++++++.+|...|++++ |..
T Consensus 214 ---------------~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 214 ---------------SAGLAVDTLCAVGKYQEAIQTGESALARGLDG-------AALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred ---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 00124677889999999999999999887644 4578999999999999996 899
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 503 YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 503 ~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.|+++++++| ++.....+..++...|++++|+..++.+....+.+++....-+....+.|+.+.|+..++.+++.
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999 88889999999999999999999999999998888887766677788899999999999988884
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-14 Score=154.37 Aligned_cols=420 Identities=13% Similarity=0.111 Sum_probs=258.9
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
-++.++||-+..+++.++ |..|++||..++.....+..+. .=++..|+|+.||++..+.|+|.++|
T Consensus 352 ~iH~iLWn~A~~~F~~~~---Y~~s~~~y~~Sl~~i~~D~~~~-----------~FaK~qR~l~~CYL~L~QLD~A~E~~ 417 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEK---YVVSIRFYKLSLKDIISDNYSD-----------RFAKIQRALQVCYLKLEQLDNAVEVY 417 (872)
T ss_pred HHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHhccchhhhh-----------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999999 9999999999999854432221 12679999999999999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC--chH-HH----------HhHHHHH-HHhch--
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI--PEC-IW----------VSAVEAY-FQAAG-- 362 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~--~~~-~~----------ls~~~ly-~~~~~-- 362 (733)
..+++. .+..|...+....+...-|...+|+..+.......+. ++. ++ ++.+..+ ..+.+
T Consensus 418 ~EAE~~----d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~~~n~Q~I 493 (872)
T KOG4814|consen 418 QEAEEV----DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLMIFNSQTI 493 (872)
T ss_pred HHHHhh----ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHHHHhcchh
Confidence 999874 2345556677778888889999999887765422211 111 11 1111111 11111
Q ss_pred --hhhHHHHHHHHHhhhccCCch--HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh-------hcch
Q 004720 363 --TAGAETAKGVFLGLLGRCHVS--AKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF-------VGDA 431 (733)
Q Consensus 363 --~~a~~~lk~~l~~ll~~~~~~--~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~-------~g~~ 431 (733)
+.+.+++-.+ ...+ -..++...-+|+. ..-|+-++.. .|+.. ..+.++|+ +|..
T Consensus 494 ~sE~~~~~l~~~-------~~~q~~v~~~~~e~L~F~L-~~~~~~~~~~-~ka~e------~~~~~~Cln~~~~~~FGe~ 558 (872)
T KOG4814|consen 494 SSESSSQTLSIL-------YTLQMIVKVSEEEPLEFFL-NYLPTVQKLL-QKAVE------FLKTVKCLNQLPPDVFGEA 558 (872)
T ss_pred hhcchHHHHHHH-------hHHHHHHHHHHHhHHHHHH-hhccchhHHH-HHHHH------HHHHHHHHhhcCCchhhhH
Confidence 2223332211 1111 1112222223332 2223333322 22211 22345666 4554
Q ss_pred -----hHH-HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCCCchhhhhhHHHHHHHHHHH---HhCCCHHH
Q 004720 432 -----AAK-ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY---LPFDVENRILRAKSFRVLCLCY---LGLSLIDR 499 (733)
Q Consensus 432 -----~~~-~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~---~~~~~~~~~~~akl~r~la~cy---l~l~~~~~ 499 (733)
.++ +..|+...-||.|..+.|.+.|+-.-+++..+.+| .|.|+.. .+.--+.|..++.. +.|.+-.+
T Consensus 559 ~~~~E~~~nE~~WFa~T~WNLav~C~Kd~~~e~~~EF~~L~~~f~~~ip~D~~~-~~~~~I~R~~~L~~~~~IaLEk~~K 637 (872)
T KOG4814|consen 559 IYQQEVAVNEIEWFASTSWNLAVKCLKDQSCESISEFPQLCIQFIDLIPVDDFT-MYHFTIWRFKALILQLIIALEKAKK 637 (872)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHccCCccccc-chhhHHHHHHHHHHHHHHHHHhhhh
Confidence 222 78999999999999999999999999999999864 4655421 23344455544432 23322222
Q ss_pred HHHHHH------HHH----hh--------CC------C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-hHHHH
Q 004720 500 AQEYIT------EAE----KL--------EP------N--IASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-TDFLS 552 (733)
Q Consensus 500 A~e~~~------~A~----~l--------dp------~--~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-~~lL~ 552 (733)
+.-..+ +++ .+ +| + ....++.|.|+.+.++.-......+.+....-.. ..+..
T Consensus 638 ~~~~~~Q~~~~se~L~~s~~~~D~~~~~k~~~~~~~~~~~~~~~L~a~~Ih~~LN~~~~q~~i~~~~~~~~~~~~~~~~~ 717 (872)
T KOG4814|consen 638 DQHQKDQDIYESEELVNSINVMDKSSEFKDGSSLEDRNTLHECFLEALTIHLELNLMMDQTRILDILKKTELYQDSRVDA 717 (872)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhHHhhCCCCccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHccchhhhhhhHHH
Confidence 221111 121 11 22 1 1223457999999999866666666665442222 23445
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhhhcCC-CCCchhHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHhhhcccC
Q 004720 553 LAAHEAVA--CQALSVAVAALSNLLNFYTSG-KPMPTKEVVVLRTIVTILTQETGNE---SEVLKYMKRAHARTSEIGAN 626 (733)
Q Consensus 553 la~~~a~~--~~~~~~a~~aL~~Ll~~~~~~-~~~~~~~~~~lR~li~l~~~~~~~~---~~~l~~~~~A~~~l~~~~~~ 626 (733)
++ -+|.+ ..+..++.+||..-+-++-.+ .|...+...+.|.||-+-+-..|+. ..+|+.+.+++.++...-
T Consensus 718 l~-I~As~~P~~~P~~~l~AL~e~Ll~~~~~aspe~~~~~lc~~~LI~l~~V~~G~~~vEl~iL~~v~~~~~i~~s~~-- 794 (872)
T KOG4814|consen 718 LL-IDASSNPEDLPKGVLIALLETLLKRNMGASPEVKERELCSWLLILLENVINGNHEVELRILDRVLKILNINQSSL-- 794 (872)
T ss_pred HH-HHHhcChhhcchhHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhh--
Confidence 54 34455 445677888886544434333 3445556666777765543223433 237888888887765542
Q ss_pred ccCCCccccchhhHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHcccc
Q 004720 627 CFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRV 677 (733)
Q Consensus 627 ~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p 677 (733)
...+++|..|++|++.++||+||-...-.+++.+.-|..++.+|.+...
T Consensus 795 --~~t~~YP~~E~~WLa~~~WN~gvL~~~~~~~~~A~KWc~~~L~fan~vT 843 (872)
T KOG4814|consen 795 --QDTDGYPQTELEWLATYCWNIGVLYIIKDNKSNAIKWCKHSLGFANMVT 843 (872)
T ss_pred --hhcCCCcHHHHHHHHHHHhhhheeeeeccchhhHHHHHHHHHHHHhhhc
Confidence 1345899999999999999999999999999999999999999988753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-15 Score=161.65 Aligned_cols=305 Identities=12% Similarity=0.064 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.....++..+...|+++.|+..+.++....|.++ .+++.+|..+...|+ +++|+..+++++.. +...
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~---~~~A~~~~~~~l~~---~~~~ 102 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV-------ELHLALGNLFRRRGE---VDRAIRIHQNLLSR---PDLT 102 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH-------HHHHHHHHHHHHcCc---HHHHHHHHHHHhcC---CCCC
Confidence 3444556678899999999999999999988654 357788999999999 99999999987763 2111
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
...+..++..|+.+|...|++++|+.+++.+.+. .+.++.+....+.++...|++++|+..+..++
T Consensus 103 ----------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 103 ----------REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred ----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 1123457889999999999999999999999874 23445566788899999999999999998887
Q ss_pred hccCCchH-----HHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 341 EIKGIPEC-----IWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 341 ~~~~~~~~-----~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
...+.+.. ++...+..|...+. ...+..++++.+ +..|++..
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~---------------------~~~A~~~~~~al--~~~p~~~~---------- 215 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGD---------------------LDAARALLKKAL--AADPQCVR---------- 215 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCC---------------------HHHHHHHHHHHH--hHCcCCHH----------
Confidence 54332211 12223333332222 123333333333 22232210
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
.....|..+.+.|++++|+++|+.++...|. +....+..++.+|...|
T Consensus 216 --------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 216 --------------------------ASILLGDLALAQGDYAAAIEALERVEEQDPE------YLSEVLPKLMECYQALG 263 (389)
T ss_pred --------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChh------hHHHHHHHHHHHHHHcC
Confidence 1223788899999999999999999877553 23456788899999999
Q ss_pred CHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHH-HH-cCCHHHHHHHHHH
Q 004720 496 LIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEA-VA-CQALSVAVAALSN 573 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a-~~-~~~~~~a~~aL~~ 573 (733)
++++|.+.++++.+.+|+......+..++...|++++|+..++.+....+.++.+..+..... .. .|....++..++.
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 999999999999999995444577899999999999999999988877555555554432222 11 3466667767776
Q ss_pred HHhh
Q 004720 574 LLNF 577 (733)
Q Consensus 574 Ll~~ 577 (733)
++..
T Consensus 344 ~~~~ 347 (389)
T PRK11788 344 LVGE 347 (389)
T ss_pred HHHH
Confidence 6653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-13 Score=154.60 Aligned_cols=488 Identities=16% Similarity=0.107 Sum_probs=282.9
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
-++.-+..|+|..|...|.+|....|..- + +.-+...-+.|..|+.+.|+--++|+.+++|...
T Consensus 170 kA~i~ynkkdY~~al~yyk~al~inp~~~-----a--------D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v--- 233 (1018)
T KOG2002|consen 170 KARIAYNKKDYRGALKYYKKALRINPACK-----A--------DVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV--- 233 (1018)
T ss_pred HHHHHhccccHHHHHHHHHHHHhcCcccC-----C--------CccchhhhHHHhccchhhHHHHHHHHHhcChhhH---
Confidence 34455678899999999999887766311 1 1122235688999999999999999999999533
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
.++.-+|..-+...+.+++..++..+++|+.+ ++.++- ++..|++-|+..|+|++|+..
T Consensus 234 ----~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~---n~~nP~--------------~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 234 ----SALVALGEVDLNFNDSDSYKKGVQLLQRAYKE---NNENPV--------------ALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred ----HHHHHHHHHHHHccchHHHHHHHHHHHHHHhh---cCCCcH--------------HHHHHHHHHhhcccHHHHHHH
Confidence 34555555555555555599999999999998 432221 444555555555555555555
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
..-+.+.. .-+..-..+.|+.++.+...|+|++|..++...+... ++..--.+.++..|+..+. .-+..++.+++..
T Consensus 293 a~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 293 AEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 44443311 0011112233555555555566665555555555222 2212223445555555444 2233333322221
Q ss_pred ---------hhccCCch-------HHHHHHHHHHhhcCCCCCcchHHHHHHHHHH------HHhhhHHHHHHHhh--cch
Q 004720 376 ---------LLGRCHVS-------AKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV------AELVSDERVLALFV--GDA 431 (733)
Q Consensus 376 ---------ll~~~~~~-------~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l------~~l~~~e~v~~~~~--g~~ 431 (733)
++|..... .+.+..++.+++ +..|++...|...+.++ +.+.....+.+++. +++
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~--~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL--EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH--hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC
Confidence 12221111 244455555555 44565666554443333 22223333433333 223
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CC---CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY-LP---FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~-~~---~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
.+. -++-|.|.-+|..|++..|.+.|..|+.. .+ .+++. ...-.+.+|+|.|+..+++++.|.+.|...
T Consensus 450 ip~------E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~-~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 450 IPP------EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK-STNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred CCH------HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc-cchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 222 23446899999999999999999999976 22 22211 233457899999999999999999999999
Q ss_pred HhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCch
Q 004720 508 EKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPT 586 (733)
Q Consensus 508 ~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~ 586 (733)
++..| .+.+++.+...+..+++..+|...++.+......+|+..++-...-.+......+.+=++.+++..+.. +++=
T Consensus 523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~Y 601 (1018)
T KOG2002|consen 523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAY 601 (1018)
T ss_pred HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-Cchh
Confidence 99999 566666666788889999999999999999999999988887766666556666666666666643332 1121
Q ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh---cccCcc---CCCccccc------hhhHHHHhh---------
Q 004720 587 KEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE---IGANCF---FGTEEAGR------REQNWLAVM--------- 645 (733)
Q Consensus 587 ~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~---~~~~~~---~~~~~~~~------~E~~Wf~~~--------- 645 (733)
..+.+==..|+-+.+...+...-.+++.+|++...+ ..+.+. .|-|++-. .-..=|+++
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 121211111111211112223334455555554322 111111 11121111 112223332
Q ss_pred hh-hhhhhcccccchhhHHHHHHHHHHHH
Q 004720 646 SW-NFGTNCGKEKKYELCMEFLRLASEFY 673 (733)
Q Consensus 646 aw-N~a~~~~~~~~~~~~~~f~~la~~~~ 673 (733)
.| |+|=-+.-.++|..+.+.|+.|..-+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34 77766666677888889898888743
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=158.81 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=208.1
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
.....-||..+..|+|+.|+.+|+.|+.+.|.- --++++|.+++..+|+|++|+.+..++.++.|.
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n--------------hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~ 68 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN--------------HVLYSNRSAAYASLGSYEKALKDATKTRRLNPD 68 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc--------------cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 345678999999999999999999999987630 025567889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh-------------------------
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET------------------------- 267 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~------------------------- 267 (733)
-|++ |...|..++..|+ |++|+.-|++.++. ++.+...-.|.
T Consensus 69 w~kg-------y~r~Gaa~~~lg~---~~eA~~ay~~GL~~---d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~ 135 (539)
T KOG0548|consen 69 WAKG-------YSRKGAALFGLGD---YEEAILAYSEGLEK---DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN 135 (539)
T ss_pred hhhH-------HHHhHHHHHhccc---HHHHHHHHHHHhhc---CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc
Confidence 7765 8888999999999 99999999999886 32211000000
Q ss_pred ----------------------------------------------------------------h------------hhh
Q 004720 268 ----------------------------------------------------------------T------------ELK 271 (733)
Q Consensus 268 ----------------------------------------------------------------~------------~~~ 271 (733)
| +..
T Consensus 136 ~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ 215 (539)
T KOG0548|consen 136 LPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNT 215 (539)
T ss_pred ChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhH
Confidence 0 000
Q ss_pred -----hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCCh-------HHHHHHHHHh
Q 004720 272 -----GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRY-------NEAELELRGM 339 (733)
Q Consensus 272 -----el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~-------deAi~~l~~~ 339 (733)
...+.-.-.|++......+|+.|+.+++.+..+ . .+..-+....-+++..|.+ ++|++..+..
T Consensus 216 ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 216 EERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 001223334444444444555555555555442 1 1111112222222222222 2222222111
Q ss_pred hhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
-.....-.....++++.|...+. ...++..+.+.+.....|+ .+..+..
T Consensus 291 rad~klIak~~~r~g~a~~k~~~---------------------~~~ai~~~~kaLte~Rt~~----------~ls~lk~ 339 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKRED---------------------YEGAIKYYQKALTEHRTPD----------LLSKLKE 339 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHh---------------------HHHHHHHHHHHhhhhcCHH----------HHHHHHH
Confidence 10000000000111222222211 1222222222221011121 1122222
Q ss_pred HHHHHHHhh-----cchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 420 DERVLALFV-----GDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 420 ~e~v~~~~~-----g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
.|+++..-. ++..+ .--..+|+.+|+.|||..|+..|++++...|.| +++|.|+|.||++|
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A-------~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-------a~lYsNRAac~~kL 405 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKA-------EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-------ARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHhhChhHH-------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-------hHHHHHHHHHHHHH
Confidence 222222211 22222 222348999999999999999999999987644 68999999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+++..|..+++.++++|| .+..++....++....++++|+++|.......+.+..+
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 999999999999999999 67777788999999999999999999888876544443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-14 Score=149.93 Aligned_cols=205 Identities=13% Similarity=0.070 Sum_probs=142.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH-H
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV-E 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~-~ 355 (733)
.+..++..|++.++-++-++.++.+..+ ++.+|+++|-++.++.-+++|++|+.++...++..|....-++-.. -
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 4777899999999999999999999987 6899999999999999999999999999998855443332233322 2
Q ss_pred HHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 356 AYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 356 ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
+|..+.-+.+..++. . +..+| ...| ++.
T Consensus 438 ~Yr~~k~~~~m~~Fe---------------e---~kkkF---P~~~---Evy---------------------------- 465 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFE---------------E---AKKKF---PNCP---EVY---------------------------- 465 (606)
T ss_pred HHHHHHHHHHHHHHH---------------H---HHHhC---CCCc---hHH----------------------------
Confidence 232221122222221 1 11133 1222 111
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
+ -.|.++--+++|+.|++.|..++++.|....-+.+.+-+-.+-.....=.++++.|.+.+++|+++|| .-
T Consensus 466 -----~---~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 466 -----N---LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred -----H---HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence 0 15677778999999999999999988862111111122222222222234899999999999999999 77
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
...-.+..+-++.|+.++|++.+++-..+.-
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999988776654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-12 Score=144.96 Aligned_cols=305 Identities=15% Similarity=0.085 Sum_probs=218.0
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.|..|..+...|+ +++|+..|+++++. +|.+ ..++..++.+|...|++++|+..++.+..
T Consensus 38 ~y~~g~~~~~~~~---~~~A~~~~~~al~~---~p~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 38 DYFKGLNFLLNEQ---PDKAIDLFIEMLKV---DPET--------------VELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHhc---Cccc--------------HHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 6667899999999 99999999999997 4421 23678899999999999999999998877
Q ss_pred cCCCCCCCC----CcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhc
Q 004720 304 GSFDGGDHH----ASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLG 378 (733)
Q Consensus 304 ~~~~~~~~~----p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~ 378 (733)
.+ ... +..++..+.++...|++++|+..+..++...+.....+...+.+|...+. +.|.+.++
T Consensus 98 ~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------- 165 (389)
T PRK11788 98 RP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAE-------- 165 (389)
T ss_pred CC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHH--------
Confidence 32 111 13456778899999999999999998886444444445555566654444 33333333
Q ss_pred cCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHH
Q 004720 379 RCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEA 458 (733)
Q Consensus 379 ~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~ 458 (733)
+++ +..|.+.. ......+++.|..+++.|++++
T Consensus 166 --------------~~~--~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 166 --------------RLE--KLGGDSLR-------------------------------VEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred --------------HHH--HhcCCcch-------------------------------HHHHHHHHHHHHHHHhCCCHHH
Confidence 222 11221100 0011233458899999999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHH
Q 004720 459 SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQ 536 (733)
Q Consensus 459 A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~ 536 (733)
|+.+|+.++...|.. ...+..++.+|.+.|++++|.++++++.+.+| + ..+...+..++...|+.++|++.
T Consensus 199 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 199 ARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred HHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999876643 35678899999999999999999999999998 4 34556688999999999999999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhh--cCChhHHHHHHH
Q 004720 537 ILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQE--TGNESEVLKYMK 614 (733)
Q Consensus 537 l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~--~~~~~~~l~~~~ 614 (733)
++.+....+..+.+ ..-+....+.|+.+.|+..|+..++..+.+ ..++.++...... .|..++.+..++
T Consensus 272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~--------~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 272 LRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSL--------RGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCH--------HHHHHHHHHhhhccCCccchhHHHHHH
Confidence 99998876644444 444577778999999999999888843221 1233344333322 456677777777
Q ss_pred HHHHHhhhc
Q 004720 615 RAHARTSEI 623 (733)
Q Consensus 615 ~A~~~l~~~ 623 (733)
+........
T Consensus 343 ~~~~~~~~~ 351 (389)
T PRK11788 343 DLVGEQLKR 351 (389)
T ss_pred HHHHHHHhC
Confidence 777644333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-12 Score=157.15 Aligned_cols=356 Identities=14% Similarity=0.029 Sum_probs=242.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
..++.-.|++++|+..+.++..+.|... .++.++|..+...|+ +++|+..|++++.+ .|.+.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a-------~~~~~lA~~~~~~g~---~~~A~~~~~~al~~---~P~~~----- 83 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPA-------RGYAAVAVAYRNLKQ---WQNSLTLWQKALSL---EPQND----- 83 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCH-----
Confidence 4677889999999999999987665533 347777888889999 99999999999998 54321
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
..+..++.++...|++++|+..++.+.+. .+.++. ++..+.++...|++++|+..+.+.+...|..
T Consensus 84 ---------~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 84 ---------DYQRGLILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred ---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 14568899999999999999999988875 456777 8888999999999999999999998656655
Q ss_pred hHHHHhHHHHHHHhch-hhhHHHHHHHHH------------------hhhccCCch------HHHHHHHHHHhhcC-CCC
Q 004720 347 ECIWVSAVEAYFQAAG-TAGAETAKGVFL------------------GLLGRCHVS------AKAAVRMAHRVAGD-EGD 400 (733)
Q Consensus 347 ~~~~ls~~~ly~~~~~-~~a~~~lk~~l~------------------~ll~~~~~~------~~~a~~~l~~~l~~-~~s 400 (733)
..+....+.++...+. +.|+..++.+.. ..+.+.... ...|+..++.++.. ...
T Consensus 150 ~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 150 QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 5555556666655444 445555542210 000000000 13344444455410 122
Q ss_pred CcchHHH-HHH---HHHHHHhhhHHHHHHHhhcchhHHH--hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc
Q 004720 401 GVSEAAV-KLR---AKAVAELVSDERVLALFVGDAAAKE--RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV 474 (733)
Q Consensus 401 p~~~~~l-~~k---a~~l~~l~~~e~v~~~~~g~~~~~~--~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~ 474 (733)
|+....+ ..+ ...+.+....+.++..|. ...+. ..+.....| .|..++..|++++|+.+|+.++...|.+.
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~--~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQ--RLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHH--HhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 3221111 111 111222222333444443 11111 112234444 48899999999999999999887655431
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---------------hHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 475 ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---------------IASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 475 ~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---------------~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
. ........++..++..|++++|.+.++++...+| . ...++..+.++...|+.++|++.++
T Consensus 307 ~---~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 307 D---LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred C---CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1123456777788999999999999999988866 2 1245678889999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 539 AMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 539 ~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
++....+.+++++..-+......|+.+.|+..|+..++..+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 999988888888888788888899999999999999985433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-12 Score=155.69 Aligned_cols=384 Identities=10% Similarity=-0.044 Sum_probs=260.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
-.|+++.|+..++++....+. . ...+...|.++...|++++|+..+++++.+.|.++..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~--------~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a------- 85 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQL--------P------ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY------- 85 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------
Confidence 357788888888777653210 1 1234455778889999999999999999999887643
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.+.+|..+...|+ +++|+..++++++. .|.+ .. +..++.+|...|++++|+.+++.+.+
T Consensus 86 ~~~la~~l~~~g~---~~eA~~~l~~~l~~---~P~~--------------~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 86 QRGLILTLADAGQ---YDEALVKAKQLVSG---APDK--------------AN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCC--------------HH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5577888888999 99999999999988 4422 12 66789999999999999999999988
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchH----HHHhHHHHHHHhc---------hhhhHHHHH
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPEC----IWVSAVEAYFQAA---------GTAGAETAK 370 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~----~~ls~~~ly~~~~---------~~~a~~~lk 370 (733)
. .+.++...+..+.++...|..++|+..+......++.... .....+.++.... .+.|+..++
T Consensus 145 ~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 145 R----APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred h----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 6 4567777788888888888888888877655442210000 0000111111000 012222222
Q ss_pred HHHHh---------------------hhccCCchHHHHHHHHHHhhcCCCC---CcchHHHHHHHHHHHHhhhHHHHHHH
Q 004720 371 GVFLG---------------------LLGRCHVSAKAAVRMAHRVAGDEGD---GVSEAAVKLRAKAVAELVSDERVLAL 426 (733)
Q Consensus 371 ~~l~~---------------------ll~~~~~~~~~a~~~l~~~l~~~~s---p~~~~~l~~ka~~l~~l~~~e~v~~~ 426 (733)
.++.. ++.. .....++..+++++. .. |++...+ .+.....+...+..+..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~--g~~~eA~~~~~~ll~--~~~~~P~~a~~~--la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLAR--DRYKDVISEYQRLKA--EGQIIPPWAQRW--VASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhhc--cCCCCCHHHHHH--HHHHHHhcCCcHHHHHH
Confidence 22210 1111 113556666667652 32 3222222 22233333334444443
Q ss_pred hh----cchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh------hh--hhHHHHHHHHHHHHhC
Q 004720 427 FV----GDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN------RI--LRAKSFRVLCLCYLGL 494 (733)
Q Consensus 427 ~~----g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~------~~--~~akl~r~la~cyl~l 494 (733)
+. ..... ........-+.+..+.+.|+|++|+.+++.+....|..... .| +...++..++..+...
T Consensus 295 l~~~l~~~p~~--~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 295 LTELFYHPETI--ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHhhcCCCC--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 33 11100 00001122234667789999999999999988776532100 01 3456788999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSN 573 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~ 573 (733)
|++++|++.++++....| ++...+.+..++...|+.++|++.++++....+.++++....+..+...++.+.|...+..
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999888888888888899999999999999999
Q ss_pred HHhhhcCC
Q 004720 574 LLNFYTSG 581 (733)
Q Consensus 574 Ll~~~~~~ 581 (733)
+++..+.+
T Consensus 453 ll~~~Pd~ 460 (765)
T PRK10049 453 VVAREPQD 460 (765)
T ss_pred HHHhCCCC
Confidence 99965554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-11 Score=140.11 Aligned_cols=426 Identities=13% Similarity=0.080 Sum_probs=273.6
Q ss_pred hhHHhccCCcchHHHHHHHHHHHHHH-------Hh---hccCCCh-HHHHH------------HHHHHHHHHHHHHHccC
Q 004720 139 GVVWHDLKKYDLASGCFEKATEIVSK-------LD---ISRISDS-DERKL------------LLDINIARSRTAWEVLE 195 (733)
Q Consensus 139 G~~~~~~g~~~~A~~~lekA~e~~~~-------~~---~~~~~~~-~e~~~------------~l~~l~~rA~~a~~~g~ 195 (733)
|-.|.++|+.++|..-|++|+++.|. +. .+-.+.+ -..++ .-.++..-|.-+...|+
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 77788999999999999999988662 11 1111011 01111 11355555888889999
Q ss_pred HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHH
Q 004720 196 QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKF 275 (733)
Q Consensus 196 ~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~ 275 (733)
|..+.++..-+...... ...++..||++|+++..+|+ |++|-++|.+|... ++.+. +.
T Consensus 286 y~~v~~la~~ai~~t~~----~~~~aes~Y~~gRs~Ha~Gd---~ekA~~yY~~s~k~---~~d~~-----------~l- 343 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTEN----KSIKAESFYQLGRSYHAQGD---FEKAFKYYMESLKA---DNDNF-----------VL- 343 (1018)
T ss_pred HHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHcc---CCCCc-----------cc-
Confidence 99999999888865432 24578889999999999999 99999999999987 54331 01
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC----ChHHHHHHHHHhhhccCCchHHHH
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG----RYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g----~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
.+..||+.|+..|+++.+..|++.+.+. .+..+.+..+.+-+|...+ .-|.|...+...+...+.....|+
T Consensus 344 -~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 344 -PLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred -cccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3556899999999999999999988875 4566777777777777775 346777777766654455556688
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCch-----------------HHHHHHHHHHhhcCC----CCCcchHH----
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS-----------------AKAAVRMAHRVAGDE----GDGVSEAA---- 406 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~-----------------~~~a~~~l~~~l~~~----~sp~~~~~---- 406 (733)
..+.+|...+.-.++.++..++..+..+.++- ...|...+...+. . ..++.++.
T Consensus 419 ~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~-~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG-KLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh-hhhhhcCccccccchhH
Confidence 88888888777555888887765543332221 1111111111111 1 11222100
Q ss_pred -HHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhh-----
Q 004720 407 -VKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILR----- 480 (733)
Q Consensus 407 -l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~----- 480 (733)
.|..++++.++-..+...+... ...+..+..+..+--.|...-..++..+|..|++.+|.++..+...+.-.
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk--~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYK--SILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHH--HHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHH
Confidence 1344444444322111111111 11222333333333345455556777777777777776655442211111
Q ss_pred ------------------------HHHHHHHHHHHHhC------------CCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 481 ------------------------AKSFRVLCLCYLGL------------SLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 481 ------------------------akl~r~la~cyl~l------------~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+-....||+.|+.. +.+++|++.|.++++.|| |+.+.--..-|
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIV 655 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhh
Confidence 11223455555532 678899999999999999 99999889999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTD-FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT 600 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~-lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~ 600 (733)
....|++.+|+..+..+..+....+| .|.+ +|.+.++|+...|+..++..+.+.-.. .-..++-||.|..-
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl-ah~~~e~~qy~~AIqmYe~~lkkf~~~-----~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNL-AHCYVEQGQYRLAIQMYENCLKKFYKK-----NRSEVLHYLARAWY 727 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeH-HHHHHHHHHHHHHHHHHHHHHHHhccc-----CCHHHHHHHHHHHH
Confidence 99999999999999999888764444 5555 488999999999999998888754321 12244456666653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-13 Score=147.80 Aligned_cols=305 Identities=14% Similarity=0.112 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHhhhHHhccCCcc--hHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYD--LASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLN 204 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~--~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~ 204 (733)
+...++......|.++.-+.+|. .|+.+|++-.+.. + . + -=+++.-+++|..+++|++|..+++
T Consensus 312 ~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~---~---n-t-------~wvl~q~GrayFEl~~Y~~a~~~F~ 377 (638)
T KOG1126|consen 312 DASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHH---Y---N-T-------GWVLSQLGRAYFELIEYDQAERIFS 377 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc---C---C-c-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677776666665 6666666611111 0 0 0 0234445778889999999999999
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH
Q 004720 205 RAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI 284 (733)
Q Consensus 205 rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~ 284 (733)
++.++.|-.-+.++..+.++|.+- + +-++..|.+ ++++.++. +|+ .|-.+|+|
T Consensus 378 ~~r~~~p~rv~~meiyST~LWHLq-------~----~v~Ls~Laq--~Li~~~~~----sPe----------sWca~GNc 430 (638)
T KOG1126|consen 378 LVRRIEPYRVKGMEIYSTTLWHLQ-------D----EVALSYLAQ--DLIDTDPN----SPE----------SWCALGNC 430 (638)
T ss_pred HHHhhccccccchhHHHHHHHHHH-------h----hHHHHHHHH--HHHhhCCC----CcH----------HHHHhcch
Confidence 999998877777777777777442 2 223333333 44333332 122 78888999
Q ss_pred HhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhh
Q 004720 285 HLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTA 364 (733)
Q Consensus 285 yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~ 364 (733)
|.-+++++.|++|++.+.+. ++.+..++-|.+.=+....++|.|...++..+.
T Consensus 431 fSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----------------------- 483 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----------------------- 483 (638)
T ss_pred hhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----------------------
Confidence 99999999999999999885 334444444444333334444444444443221
Q ss_pred hHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 365 GAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 365 a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
-+|.|-.+|+
T Consensus 484 ----------------------------------~~~rhYnAwY------------------------------------ 493 (638)
T KOG1126|consen 484 ----------------------------------VDPRHYNAWY------------------------------------ 493 (638)
T ss_pred ----------------------------------CCchhhHHHH------------------------------------
Confidence 2333322232
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
-.|.+|.|+++|+.|.-.|++|+++.|.+ .-+..-++..+.++|+.|+|..++++|..+|| ++++.|.+..+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 27999999999999999999999998865 34667788999999999999999999999999 99999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+...+++++|++.++.++.+.+.....+.+-+....+.|+...|+.=+.-..+
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99999999999999999999988778888888999999999998765555555
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-10 Score=138.20 Aligned_cols=468 Identities=11% Similarity=-0.031 Sum_probs=285.7
Q ss_pred hHHHHH-HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 004720 126 SPAIKS-ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLN 204 (733)
Q Consensus 126 ~~~~~~-~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~ 204 (733)
++.+|- +..+...|.-....|+++.|+..|++|++..|.. ..+...-|.+++.+|++++|+..++
T Consensus 37 ~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--------------~~~~~~LA~~yl~~g~~~~A~~~~~ 102 (987)
T PRK09782 37 SDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN--------------IPLTLYLAEAYRHFGHDDRARLLLE 102 (987)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555554 4677788999999999999999999999987631 1233444789999999999999999
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH
Q 004720 205 RAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI 284 (733)
Q Consensus 205 rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~ 284 (733)
++..++|.+...+..+ |.. ++ +++|+..|++.++. .|.+.+ ++..++..
T Consensus 103 kAv~ldP~n~~~~~~L-------a~i----~~---~~kA~~~ye~l~~~---~P~n~~--------------~~~~la~~ 151 (987)
T PRK09782 103 DQLKRHPGDARLERSL-------AAI----PV---EVKSVTTVEELLAQ---QKACDA--------------VPTLRCRS 151 (987)
T ss_pred HHHhcCcccHHHHHHH-------HHh----cc---ChhHHHHHHHHHHh---CCCChh--------------HHHHHHHH
Confidence 9999999766432222 222 67 89999999999998 654332 55666666
Q ss_pred --------HhccCcHHHHHHHHHHHHccCCCCCCCCCcHH-HHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHH
Q 004720 285 --------HLQKGEYESVIKCVRVLREGSFDGGDHHASLP-VLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVE 355 (733)
Q Consensus 285 --------yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~-~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ 355 (733)
|.+.+...+++ + ...+. ..-||.+. +.+.+++...|++++|+..+..++...+.+....+.+..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL---~-lr~~~---~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ 224 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQL---N-DATFA---ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFD 224 (987)
T ss_pred hhccchhhhhhHHHHHHHH---H-HhhhC---CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 66665544444 4 33321 11145544 666999999999999999999999777777777777777
Q ss_pred HHHHh-chhhhHHHHHHHH-----------HhhhccCCchHHHHHHHHHHhhcC-CCCCcchHHH---------------
Q 004720 356 AYFQA-AGTAGAETAKGVF-----------LGLLGRCHVSAKAAVRMAHRVAGD-EGDGVSEAAV--------------- 407 (733)
Q Consensus 356 ly~~~-~~~~a~~~lk~~l-----------~~ll~~~~~~~~~a~~~l~~~l~~-~~sp~~~~~l--------------- 407 (733)
+|... +.+.+...++..+ ..++..-+ ...+..++..+--+ ...|++...+
T Consensus 225 ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~--~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 225 VLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGE--KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred HHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCC--HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 88763 2222222221111 00111000 12333333332100 1112222211
Q ss_pred ---------HHHHHH--H---HHhhhHHHHHHHhh---cchhHH------------------------HhhHHHHHHHHH
Q 004720 408 ---------KLRAKA--V---AELVSDERVLALFV---GDAAAK------------------------ERIAMHAVLWNC 446 (733)
Q Consensus 408 ---------~~ka~~--l---~~l~~~e~v~~~~~---g~~~~~------------------------~~~~~~~llW~~ 446 (733)
+.+..+ + .+.....-++.+.. |..... ..+.....+-..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL 382 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence 001000 0 00000011111111 111000 001122233345
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCch--------------h------------------------------------
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVE--------------N------------------------------------ 476 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--------------~------------------------------------ 476 (733)
+....++|++++|..+|+.+..+.+..-. +
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 66678899999999999998764221100 0
Q ss_pred --------hhh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 477 --------RIL--RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 477 --------~~~--~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.+. .+.++.+++.|+.. +++++|+..+.++....|.....+....++...|++++|+.+++++....+.
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 012 56678999999998 8999999999999999995445666778888999999999999998877665
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcccC
Q 004720 547 TTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGAN 626 (733)
Q Consensus 547 ~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~~~ 626 (733)
.+..+.+ +..+.+.|+.+.|+..+...++.. .+ ...... .+.......|+.++.+..+.+|...-+.
T Consensus 542 ~~a~~~l-a~all~~Gd~~eA~~~l~qAL~l~-P~---~~~l~~----~La~~l~~~Gr~~eAl~~~~~AL~l~P~---- 608 (987)
T PRK09782 542 NEDLLAA-ANTAQAAGNGAARDRWLQQAEQRG-LG---DNALYW----WLHAQRYIPGQPELALNDLTRSLNIAPS---- 608 (987)
T ss_pred cHHHHHH-HHHHHHCCCHHHHHHHHHHHHhcC-Cc---cHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHhCCC----
Confidence 5555544 466778899999999998888732 11 111111 1111122347788888888888754221
Q ss_pred ccCCCccccchhhHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHccccCCc
Q 004720 627 CFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQ 680 (733)
Q Consensus 627 ~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~ 680 (733)
.. .-.|+|.-+.+.+.++.+..++.-+.+ +-|++.
T Consensus 609 -----------~~-----a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~ 643 (987)
T PRK09782 609 -----------AN-----AYVARATIYRQRHNVPAAVSDLRAALE---LEPNNS 643 (987)
T ss_pred -----------HH-----HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH
Confidence 01 114666666666777777777766666 455554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-10 Score=132.18 Aligned_cols=356 Identities=13% Similarity=0.106 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
+.-+..+|...-..|+++.|+.++..++..+|..+.. |+.+|.++-.+|+ .+++....--|--+ +|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~a-------y~tL~~IyEqrGd---~eK~l~~~llAAHL---~p~ 205 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIA-------YYTLGEIYEQRGD---IEKALNFWLLAAHL---NPK 205 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhh-------HHHHHHHHHHccc---HHHHHHHHHHHHhc---CCC
Confidence 5566677888888899999999999999999987754 7788888888889 89987766666565 443
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+. .-|..++....++|++++|..||..+.+.. +.+-...+-++.++.+.|+...|...+..+
T Consensus 206 d~--------------e~W~~ladls~~~~~i~qA~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 206 DY--------------ELWKRLADLSEQLGNINQARYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred Ch--------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 22 167778888899999999999999998852 333334488899999999999999999888
Q ss_pred hhccCCchHH--HHhH----HHHHHH-hchhhhHHHHHHHHHhhhcc--CCch-------------HHHHHHHHHHhhcC
Q 004720 340 VEIKGIPECI--WVSA----VEAYFQ-AAGTAGAETAKGVFLGLLGR--CHVS-------------AKAAVRMAHRVAGD 397 (733)
Q Consensus 340 l~~~~~~~~~--~ls~----~~ly~~-~~~~~a~~~lk~~l~~ll~~--~~~~-------------~~~a~~~l~~~l~~ 397 (733)
+...| +.++ +... +..|.. +.++.|.+.+...+. .... ..++ ...+...+...-.-
T Consensus 268 ~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s-~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 268 LQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALS-KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred HhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 74333 1111 1122 222222 222455555544433 0000 0000 01111111111110
Q ss_pred CCCCcchHHH----H------------------HHH----HHHHHhhhHHHH--HHHhhcchhHHHhhHHHHHHHHHHHH
Q 004720 398 EGDGVSEAAV----K------------------LRA----KAVAELVSDERV--LALFVGDAAAKERIAMHAVLWNCASI 449 (733)
Q Consensus 398 ~~sp~~~~~l----~------------------~ka----~~l~~l~~~e~v--~~~~~g~~~~~~~~~~~~llW~~g~~ 449 (733)
++.+ |+.+| . -++ .-+-.++..+.. +..|...... ......-++.+.+..
T Consensus 346 ~~e~-d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 346 ESEK-DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-WVSDDVDLYLDLADA 423 (895)
T ss_pred ccCC-ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-ChhhhHHHHHHHHHH
Confidence 1112 22222 0 000 000111111111 0001100000 122334577788999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 450 LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 450 ~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
+-..|+|++|+++|.....-.+. .++-++.++|.||..+|++++|++.|++++.++| +......+..++.+.|
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGY------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccc------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 99999999999999998765442 3477999999999999999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHhccCC-------Ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 529 DQEGAINQILAMTICLDF-------TT--DFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~-------~~--~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+.|+|++.++.+..-... .| -++..-+..-.+.|+.+..+.....|+.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999988876521100 12 2555556666778888887666655554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-12 Score=143.31 Aligned_cols=266 Identities=17% Similarity=0.084 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh-cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLF-GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~-~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
..++.+-+..+..+|+|+.|+..+++|+++.. .....+..++..+.++|..|...++ |.+|+..|++|+.+.+...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k---~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK---YDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhc
Confidence 34555669999999999999999999998853 3445566778888899999999999 9999999999999988765
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH---HHHHHHHHhcCChHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP---VLAMKAWLGLGRYNEAEL 334 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~---~lk~~il~~~g~~deAi~ 334 (733)
+.. .+..+.++.+|+.+|...|+|++|..+++.+.+|.. ..+..+|.+. ..-+-++...+++++|+.
T Consensus 276 G~~---------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 276 GED---------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred CCC---------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 444 234567999999999999999999999888877643 2234555544 333345556688999999
Q ss_pred HHHHhh---hccC-----CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchH
Q 004720 335 ELRGMV---EIKG-----IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEA 405 (733)
Q Consensus 335 ~l~~~l---~~~~-----~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~ 405 (733)
.++..+ .+.+ +...++-+++.+|...++ ..|.+.+++++.... ...
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~---------------~~~---------- 401 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR---------------ELL---------- 401 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---------------hcc----------
Confidence 987654 2111 233445566666666655 555555554332211 110
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CchhhhhhHHHH
Q 004720 406 AVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF-DVENRILRAKSF 484 (733)
Q Consensus 406 ~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~-~~~~~~~~akl~ 484 (733)
.+...-+..-+|+.|..+++.++|.+|.+.|..+..+.+. ++. +++.--.|
T Consensus 402 ---------------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~-~~~~~~~~ 453 (508)
T KOG1840|consen 402 ---------------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD-HPDVTYTY 453 (508)
T ss_pred ---------------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC-CCchHHHH
Confidence 0011223456899999999999999999999998876532 222 46888899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+||+..|-.+|+|++|+++.+.++..
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999987644
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=145.31 Aligned_cols=271 Identities=15% Similarity=0.100 Sum_probs=202.7
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
.+-++.|+.|+++++|++|..+|+.+-...+-.. + -+++| ..+.|...+-.+=-.+.+-..+.+|.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~-----~meiy---ST~LWHLq~~v~Ls~Laq~Li~~~~~ 419 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------K-----GMEIY---STTLWHLQDEVALSYLAQDLIDTDPN 419 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------c-----chhHH---HHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 4567899999999999999999998876644100 0 03444 44566555544434444555566777
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
.|.. .-.+|.++.-+++ |+.|+++|++|+.+ +|... + ++.++|.-+...++||
T Consensus 420 sPes-------Wca~GNcfSLQkd---h~~Aik~f~RAiQl---dp~fa-----Y---------ayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 420 SPES-------WCALGNCFSLQKD---HDTAIKCFKRAIQL---DPRFA-----Y---------AYTLLGHESIATEEFD 472 (638)
T ss_pred CcHH-------HHHhcchhhhhhH---HHHHHHHHHHhhcc---CCccc-----h---------hhhhcCChhhhhHHHH
Confidence 7753 6678888888888 89999999999888 54221 1 5666677777778899
Q ss_pred HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh-ccCCchHHHHhHHHHHHHhchhhhHHHHHH
Q 004720 293 SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE-IKGIPECIWVSAVEAYFQAAGTAGAETAKG 371 (733)
Q Consensus 293 kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~-~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~ 371 (733)
+|..+++.+... .+.|-.++|=.+-+|++.++++.|+-++++.+. +|.+..-+
T Consensus 473 ~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~---------------------- 526 (638)
T KOG1126|consen 473 KAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL---------------------- 526 (638)
T ss_pred hHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH----------------------
Confidence 999999888875 456667778888888888888888888776653 21111000
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILF 451 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~ 451 (733)
=..|..+.
T Consensus 527 ------------------------------------------------------------------------~~~g~~~~ 534 (638)
T KOG1126|consen 527 ------------------------------------------------------------------------CHIGRIQH 534 (638)
T ss_pred ------------------------------------------------------------------------hhhhHHHH
Confidence 01466777
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
+.|+.++|+++|++|.+.+|.+.- .-+.++..+..+++|++|...+++..++-| +....+++.+||.+.|++
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l-------~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPL-------CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCch-------hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 888999999999999999887752 347788899999999999999999999999 888999999999999999
Q ss_pred HHHHHHHHHHHhccCCChH
Q 004720 531 EGAINQILAMTICLDFTTD 549 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~~ 549 (733)
+.|+..+--+..+.+...+
T Consensus 608 ~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHhhHHHhcCCCccch
Confidence 9999988888887665444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-09 Score=130.95 Aligned_cols=402 Identities=12% Similarity=0.036 Sum_probs=260.5
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......+...+..|+++.|...|+++++..|... . .+ . --+.++...|+.++|+..++|+. .|
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~------~---av-~----dll~l~~~~G~~~~A~~~~eka~--~p 97 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS------G---QV-D----DWLQIAGWAGRDQEVIDVYERYQ--SS 97 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch------h---hH-H----HHHHHHHHcCCcHHHHHHHHHhc--cC
Confidence 34667778888899999999999999998765210 0 00 0 11344556699999999999999 44
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
....... +...|..+...|+ |++|+..|+++++. +|.+. .++..|+..|.+.+++
T Consensus 98 ~n~~~~~-----llalA~ly~~~gd---yd~Aiely~kaL~~---dP~n~--------------~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 98 MNISSRG-----LASAARAYRNEKR---WDQALALWQSSLKK---DPTNP--------------DLISGMIMTQADAGRG 152 (822)
T ss_pred CCCCHHH-----HHHHHHHHHHcCC---HHHHHHHHHHHHhh---CCCCH--------------HHHHHHHHHHhhcCCH
Confidence 4332222 3344566678888 99999999999998 55332 1556778999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH--hcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL--GLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAET 368 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~--~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~ 368 (733)
++|++.++.+.+. +|.....++.+++ ..+++.+|+..+++++...|....++......+...+. +.|.+.
T Consensus 153 ~eAl~~l~~l~~~-------dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 153 GVVLKQATELAER-------DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred HHHHHHHHHhccc-------CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999888764 4443322444444 45667679999999996666555555454444444443 455544
Q ss_pred HHHHH--H----------------hhhcc----CCch----HHHHHHHHHHhhc-CCCCCcchHHH----HHHHHHHHHh
Q 004720 369 AKGVF--L----------------GLLGR----CHVS----AKAAVRMAHRVAG-DEGDGVSEAAV----KLRAKAVAEL 417 (733)
Q Consensus 369 lk~~l--~----------------~ll~~----~~~~----~~~a~~~l~~~l~-~~~sp~~~~~l----~~ka~~l~~l 417 (733)
.+..- + ...+. ..++ .+.++.-.+.++. ....|.....+ ..+...+...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 44210 0 00010 0111 1122333333330 01223221111 2333333333
Q ss_pred hhHHHHHHHhh-----cchh------------------HHHhhHHH--------------HHHH--HHHHHHHhcCCHHH
Q 004720 418 VSDERVLALFV-----GDAA------------------AKERIAMH--------------AVLW--NCASILFRSKDYEA 458 (733)
Q Consensus 418 ~~~e~v~~~~~-----g~~~------------------~~~~~~~~--------------~llW--~~g~~~~k~~~y~~ 458 (733)
.....|++.+. |... .+...-+. .+.+ ..-..+.++++|++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 32233322222 1100 01011111 1211 13456789999999
Q ss_pred HHHHHHHhhccCCC--------CchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCC
Q 004720 459 SAEMFEKSMLYLPF--------DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND 529 (733)
Q Consensus 459 A~~~y~~aL~~~~~--------~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd 529 (733)
|..+......-.|. ....+++....++.++.++.-.|++.+|.+.+++.+...| ++.....++.++...|.
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 99999988764441 1111357789999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 530 QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..+|.+.++......+.+..+...-+..++..++...|...+..|++.++++
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9999999999888877777777777788888999999999999999976665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-11 Score=145.34 Aligned_cols=289 Identities=11% Similarity=-0.047 Sum_probs=199.9
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
-+|++..+...+..+....|..|.. .-+.+++++|.++.. +. +++|+..|.++... .|.+
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~--~~~~a~~~LG~~l~~-~~---~~eAi~a~~~Al~~---~Pd~----------- 509 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPS--YDAAAWNRLAKCYRD-TL---PGVALYAWLQAEQR---QPDA----------- 509 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCC--CCHHHHHHHHHHHHh-CC---cHHHHHHHHHHHHh---CCch-----------
Confidence 3677766666666666655543320 123578999999887 66 78899999999887 4311
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
.....++.++...|++++|+.+++.+... +..+...+..+.++...|++++|+..+...+...+....++.
T Consensus 510 ----~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~ 580 (987)
T PRK09782 510 ----WQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW 580 (987)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence 02445577778899999999999988764 233455678888999999999999999888854332222221
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
.+.......++ ...|...+.+.+ +..|+ ..
T Consensus 581 ~La~~l~~~Gr---------------------~~eAl~~~~~AL--~l~P~-~~-------------------------- 610 (987)
T PRK09782 581 WLHAQRYIPGQ---------------------PELALNDLTRSL--NIAPS-AN-------------------------- 610 (987)
T ss_pred HHHHHHHhCCC---------------------HHHHHHHHHHHH--HhCCC-HH--------------------------
Confidence 11111111111 133444444444 34442 21
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
.+.+.|..+.+.|++++|+.+|+.++...|.+ +.++.+++.++...|++++|++.+++|++++
T Consensus 611 ----------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 611 ----------AYVARATIYRQRHNVPAAVSDLRAALELEPNN-------SNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred ----------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12247888889999999999999999887754 3578899999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
| ++...+.+..++...|++++|+.++++.....+...++..-.........+.+-+.++++.-..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9 8888889999999999999999999999888766656555555555555556666665554444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-10 Score=120.20 Aligned_cols=359 Identities=15% Similarity=0.092 Sum_probs=219.0
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
...|..+-+.|.-++..|+ |++|+++|.+|++++.. ++ .-+.+++.||...|+|+++++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kk---Y~eAIkyY~~AI~l~p~---ep--------------iFYsNraAcY~~lgd~~~Vied 171 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKK---YDEAIKYYTQAIELCPD---EP--------------IFYSNRAACYESLGDWEKVIED 171 (606)
T ss_pred HHHHHHHHhhhhhhhhccc---HHHHHHHHHHHHhcCCC---Cc--------------hhhhhHHHHHHHHhhHHHHHHH
Confidence 3456667789999999999 99999999999999443 11 1577889999999999999998
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhchhhhHHHHHHHHHhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAGTAGAETAKGVFLGL 376 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~l 376 (733)
-..+.++ ++.+..+++-+..++.++|++++|...+--.-.+.+ ....+-.-+=..+. ..|-..++.-+..-
T Consensus 172 ~TkALEl----~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk----k~a~~ka~e~~k~n 243 (606)
T KOG0547|consen 172 CTKALEL----NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK----KQAMKKAKEKLKEN 243 (606)
T ss_pred HHHHhhc----CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH----HHHHHHHHHhhccc
Confidence 8888876 456666779999999999999999988643222111 00000000001111 11112222111100
Q ss_pred hccCCchHHHHHHHHHHhhcCCCC--Cc---c-hHHHHHHHHHHHHhh---hHHHHHHHhh----cchh-------HHHh
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGD--GV---S-EAAVKLRAKAVAELV---SDERVLALFV----GDAA-------AKER 436 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~s--p~---~-~~~l~~ka~~l~~l~---~~e~v~~~~~----g~~~-------~~~~ 436 (733)
..+--|+...-...+..|.. +.. ++ + ++.....+....+.. .++.+.+.++ ++.. ..+.
T Consensus 244 r~p~lPS~~fi~syf~sF~~-~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l 322 (606)
T KOG0547|consen 244 RPPVLPSATFIASYFGSFHA-DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL 322 (606)
T ss_pred CCCCCCcHHHHHHHHhhccc-cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH
Confidence 01112221111222222210 000 00 0 011001111100000 1222222222 1111 0112
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.-+...+-..|.-+|-.|++-.|-+-|..++..+|.+. ++|..++..|+..++-.+-..+|++|..+|| ++.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-------~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d 395 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-------SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD 395 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-------hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc
Confidence 22233333489999999999999999999999888663 4599999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDFTT-DFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRT 594 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~-~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~ 594 (733)
++|-+.+++...+++++|+..+++..++.+.+. -++.+|+..... +......+-++....+.+. ..+++++
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~----~~Evy~~--- 467 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPN----CPEVYNL--- 467 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC----CchHHHH---
Confidence 999999999999999999999999999854322 345555443333 3455555555555554433 2345553
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhh
Q 004720 595 IVTILTQETGNESEVLKYMKRAHARTS 621 (733)
Q Consensus 595 li~l~~~~~~~~~~~l~~~~~A~~~l~ 621 (733)
....+ ...++-+..+++|..|.+.-+
T Consensus 468 fAeiL-tDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 468 FAEIL-TDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHH-hhHHhHHHHHHHHHHHHhhcc
Confidence 22222 223455678888888886544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-11 Score=140.42 Aligned_cols=238 Identities=15% Similarity=0.085 Sum_probs=181.8
Q ss_pred HHHHHHHHH---HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHH--HHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 183 NIARSRTAW---EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKS--ALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 183 l~~rA~~a~---~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~--~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
+..|+...+ ..++++.|+.++++|..++|.++..+..++.++...|.. ....++ +++|...+++|+++ +
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~---~~~A~~~~~~Al~l---d 334 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNA---MIKAKEHAIKATEL---D 334 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchH---HHHHHHHHHHHHhc---C
Confidence 334554444 335678999999999999999887777777776655542 123455 89999999999998 6
Q ss_pred CCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 258 LGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 258 ~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
|.+. .++..+|.++...|++++|+.+++.+.+. ++.+|..++..+.++...|++++|+..+.
T Consensus 335 P~~~--------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 335 HNNP--------------QALGLLGLINTIHSEYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred CCCH--------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5332 26778899999999999999999999986 56778888999999999999999999988
Q ss_pred HhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 338 GMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 338 ~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
+.+.. +|++...
T Consensus 397 ~Al~l---------------------------------------------------------~P~~~~~----------- 408 (553)
T PRK12370 397 ECLKL---------------------------------------------------------DPTRAAA----------- 408 (553)
T ss_pred HHHhc---------------------------------------------------------CCCChhh-----------
Confidence 66532 2212100
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCH
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLI 497 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~ 497 (733)
.+..+..++..|+|++|+.+|+.++...+++ ....+.+++.+|..+|++
T Consensus 409 -------------------------~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~------~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 409 -------------------------GITKLWITYYHTGIDDAIRLGDELRSQHLQD------NPILLSMQVMFLSLKGKH 457 (553)
T ss_pred -------------------------HHHHHHHHHhccCHHHHHHHHHHHHHhcccc------CHHHHHHHHHHHHhCCCH
Confidence 0013345677899999999999998765422 234689999999999999
Q ss_pred HHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 498 DRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 498 ~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
++|.+.+.+.....| +......++.+|...|+ +|...++.+.+...
T Consensus 458 ~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 458 ELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 999999999888888 67777788889888884 78777777766543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-10 Score=117.60 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=162.2
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
..+..++++|..++..|+ +++|..+++++++. .|.+ ...+..++.+|...|++++|+.++
T Consensus 29 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~---~p~~--------------~~~~~~la~~~~~~~~~~~A~~~~ 88 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGD---LEVAKENLDKALEH---DPDD--------------YLAYLALALYYQQLGELEKAEDSF 88 (234)
T ss_pred cHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---Cccc--------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456789999999999999 99999999999887 4321 136777899999999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhc
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLG 378 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~ 378 (733)
+.+.+. .+.++...+..+.++...|++++|+..+...+...+
T Consensus 89 ~~al~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------------- 130 (234)
T TIGR02521 89 RRALTL----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL---------------------------------- 130 (234)
T ss_pred HHHHhh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----------------------------------
Confidence 988875 345667778888899999999999888775543100
Q ss_pred cCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHH
Q 004720 379 RCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEA 458 (733)
Q Consensus 379 ~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~ 458 (733)
.+.. ...+++.|..+++.|++++
T Consensus 131 ---------------------~~~~------------------------------------~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 131 ---------------------YPQP------------------------------------ARSLENAGLCALKAGDFDK 153 (234)
T ss_pred ---------------------cccc------------------------------------hHHHHHHHHHHHHcCCHHH
Confidence 0000 0012346888899999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 459 SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 459 A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
|.++|..++...|.+ ...+..++.+|...|++++|.++++++++..| ++........++...|+.++|....
T Consensus 154 A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 154 AEKYLTRALQIDPQR-------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHHhCcCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999887644 34678999999999999999999999998888 7788888899999999999999988
Q ss_pred HHHHhc
Q 004720 538 LAMTIC 543 (733)
Q Consensus 538 ~~~~~~ 543 (733)
+.+...
T Consensus 227 ~~~~~~ 232 (234)
T TIGR02521 227 AQLQKL 232 (234)
T ss_pred HHHHhh
Confidence 777553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-10 Score=114.76 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=161.9
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls 352 (733)
.....+..++.+|...|++++|+..++.+.+. .+.++..+...+.++...|++++|+..+...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------- 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---------- 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------
Confidence 34568888999999999999999999988775 3456667788888999999999998887655431
Q ss_pred HHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchh
Q 004720 353 AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAA 432 (733)
Q Consensus 353 ~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~ 432 (733)
.|.++.
T Consensus 95 -----------------------------------------------~~~~~~--------------------------- 100 (234)
T TIGR02521 95 -----------------------------------------------NPNNGD--------------------------- 100 (234)
T ss_pred -----------------------------------------------CCCCHH---------------------------
Confidence 111110
Q ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 433 AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 433 ~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+++.|..++..|+|++|+++|..++...+. +.....+.+++.||...|++++|.+.+.++++.+|
T Consensus 101 ---------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 101 ---------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-----PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred ---------HHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 1234678888999999999999999874321 23456789999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
++...+.+..++...|++++|++.++.+....+.+++.+...+......|+.+.+....+.+..
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7888889999999999999999999999887666777777777888888888888776665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-10 Score=122.30 Aligned_cols=244 Identities=16% Similarity=0.064 Sum_probs=166.0
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.++.+.++..+++++...+..|. ..+..+++.|..+...|+ +++|+..|++++++ +|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~---~~a~~~~~~g~~~~~~g~---~~~A~~~~~~Al~l---~P~~------------ 97 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE---ERAQLHYERGVLYDSLGL---RALARNDFSQALAL---RPDM------------ 97 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH---hhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHc---CCCC------------
Confidence 35667788888888865443332 345679999999999999 99999999999998 5432
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh-ccCCch-HHH
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE-IKGIPE-CIW 350 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~-~~~~~~-~~~ 350 (733)
..++..+|.+|...|++++|+..++.+.++ ++.++.+++.++.++...|++++|+..+...+. +++.+. .+|
T Consensus 98 --~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 98 --ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 237899999999999999999999999986 467778889999999999999999999998884 333331 111
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
. .++..... ...+...+.+... ..++
T Consensus 172 ~---~l~~~~~~---------------------~~~A~~~l~~~~~-~~~~----------------------------- 197 (296)
T PRK11189 172 L---YLAESKLD---------------------PKQAKENLKQRYE-KLDK----------------------------- 197 (296)
T ss_pred H---HHHHccCC---------------------HHHHHHHHHHHHh-hCCc-----------------------------
Confidence 0 00100000 1122221111110 0111
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
-.|..+...+..|++.++ +.+..+.........-.+..+..++++|..|.++|++++|+.+|++|++.
T Consensus 198 -----------~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 198 -----------EQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -----------cccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 123345566667777654 34555443333221111456788999999999999999999999999999
Q ss_pred CC--ChHHHHHHHHHHHhcCC
Q 004720 511 EP--NIASAFLKFKIYLQKND 529 (733)
Q Consensus 511 dp--~~~t~~~~~ki~l~~gd 529 (733)
+| .+..+|.+..+....+.
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 97 45666666666665444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-12 Score=133.65 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=45.1
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHH-HHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIV-SKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~-~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.++.++.++..|+++.|..++.+++.-. +. .+ .+++...|..++..|+++.|+..|++.....+..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~-------~~------~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~ 77 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPP-------DD------PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-------cc------cccccccccccccccccccccccccccccccccc
Confidence 3455888999999999999997766543 21 01 1455556889999999999999999999887776
Q ss_pred chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
+.. +.+++.. +..++ +++|...++++++- .+ +. ..+...+.+|...+++++
T Consensus 78 ~~~-------~~~l~~l-~~~~~---~~~A~~~~~~~~~~---~~-~~--------------~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 78 PQD-------YERLIQL-LQDGD---PEEALKLAEKAYER---DG-DP--------------RYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccc-------ccccccc-ccccc---cccccccccccccc---cc-cc--------------chhhHHHHHHHHHhHHHH
Confidence 643 3334333 57777 89999888888765 21 11 134455677888899999
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
+...++.+..... .+.+|..++..+.++.+.|+.++|+..+++.+...|....+
T Consensus 129 ~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~ 182 (280)
T PF13429_consen 129 AEELLEKLEELPA--APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA 182 (280)
T ss_dssp HHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 9999988775320 23456667888999999999999999998887544433333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=115.71 Aligned_cols=401 Identities=14% Similarity=0.111 Sum_probs=227.1
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE 215 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~ 215 (733)
+..|+.+++..+|..|+++|.-|.+-+|. -.+.+.++++-+-.-.++..|+|+.|+.-|+.|....|.+.
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvps---------ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~- 310 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPS---------INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI- 310 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccc---------cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-
Confidence 34577777788888888888888777653 22334456776666777899999999999999999988754
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc--chhhhhh-----------------------
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEART--REETTEL----------------------- 270 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~--~~~~~~~----------------------- 270 (733)
.-+|+-.+++.-|+ .++..+.|++-+++-... .+.++ ...+|..
T Consensus 311 -------a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~-dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~a 379 (840)
T KOG2003|consen 311 -------AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEI-DDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADA 379 (840)
T ss_pred -------hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCC-CcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhH
Confidence 24667778888888 888888888888862211 11111 0000000
Q ss_pred ---------------------------hhcHHHHHHHH--------HHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcH
Q 004720 271 ---------------------------KGLKFKTLRFI--------SAIHLQKGEYESVIKCVRVLREGSFDGGDHHASL 315 (733)
Q Consensus 271 ---------------------------~el~~~~l~~L--------a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~ 315 (733)
..++++.+..| +-.|++.|+++.|++.+++.++.. ++. .+.
T Consensus 380 ek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd---nk~-~sa 455 (840)
T KOG2003|consen 380 EKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD---NKT-ASA 455 (840)
T ss_pred HHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc---chh-hHH
Confidence 00111111111 223445555666665555555421 111 111
Q ss_pred H---HHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHH
Q 004720 316 P---VLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRM 390 (733)
Q Consensus 316 ~---~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~ 390 (733)
. +-.++.+....++.+|..+....+.... ++... ++-++..+-++. ++|.++++..+. .+.+ ++.
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~-~nkgn~~f~ngd~dka~~~ykeal~-----ndas---c~e- 525 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAAL-TNKGNIAFANGDLDKAAEFYKEALN-----NDAS---CTE- 525 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHh-hcCCceeeecCcHHHHHHHHHHHHc-----CchH---HHH-
Confidence 1 1112222222345555555444332111 11111 111111111111 455555554321 1111 000
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 391 AHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 391 l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
+++.-....+.+...+..+++|. ++..-+.-..-+|...+++|....+-.+|++||..+-.+.
T Consensus 526 ---------------alfniglt~e~~~~ldeald~f~--klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 526 ---------------ALFNIGLTAEALGNLDEALDCFL--KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred ---------------HHHHhcccHHHhcCHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 01111111133333444556655 2222111112244567888888889999999999998888
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 471 PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 471 ~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
|.++ .++.+++-.|-+-|+-..|..++-...+-=| ++.+.--+.-.|+...=+++|++++++..-..+....
T Consensus 589 p~dp-------~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 589 PNDP-------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred CCCH-------HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 8764 4678889999999999999988888888888 8888777777777777789999999888776554333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhh
Q 004720 550 FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQE 602 (733)
Q Consensus 550 lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~ 602 (733)
.-.+-+.-..+.||..-|......+..+.+. -+.+||.|+|+.-+.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpe-------dldclkflvri~~dl 707 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-------DLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-------chHHHHHHHHHhccc
Confidence 2222112224478887765555555554433 347788999986544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-09 Score=119.90 Aligned_cols=119 Identities=13% Similarity=-0.037 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch--HHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI--ASAFLKFKI 523 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~--~t~~~~~ki 523 (733)
|..+...|++++|.+.++.++...|.+.. .+ ...-...-++..++.+++.+.++++++.+| ++ .....+..+
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~----~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRA----IS-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCccc----ch-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 44455555666666666666655554321 00 001111222334555555666666666655 55 444455566
Q ss_pred HHhcCCHHHHHHHHHH--HHhccCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILA--MTICLDFTTDFLSLAAHEAVACQALSVAVAAL 571 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~--~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL 571 (733)
+.+.|++++|.++++. ..+..+.+.+..-+ +....+.|+.+.|....
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L-a~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMA-ADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 6666666666665553 22222322233322 34444455555554333
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-09 Score=116.26 Aligned_cols=303 Identities=14% Similarity=0.020 Sum_probs=195.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
...++-.+...||++.|...+.++.+..|...- .+.-.|.....+|+ ++.|..+|+++.+. .+.+.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~-------~~llaA~aa~~~g~---~~~A~~~l~~a~~~---~p~~~- 152 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL-------NLIKAAEAAQQRGD---EARANQHLEEAAEL---AGNDN- 152 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH-------HHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCcCc-
Confidence 345677888999999999999999887665321 23345777888999 99999999999876 33211
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
+ .+....+..++..|++++|+..++.+.+. .+.||.+..+.+.++...|++++|+..+......
T Consensus 153 ----------l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 153 ----------I--LVEIARTRILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred ----------h--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 1 13334589999999999999999999886 5789999999999999999999999998888754
Q ss_pred -cCCchHHHHhHHHHH---HHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 343 -KGIPECIWVSAVEAY---FQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 343 -~~~~~~~~ls~~~ly---~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
...+..+-.--...+ ..... +.+.+.+..+....-.+. ++++..+...+..+...
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~--------------------~~~~~l~~~~a~~l~~~ 276 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR--------------------RHNIALKIALAEHLIDC 276 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH--------------------hCCHHHHHHHHHHHHHC
Confidence 223332210000111 11111 222223332211100000 01222222222222222
Q ss_pred hhHHHHHHHhh-cc-hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 418 VSDERVLALFV-GD-AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 418 ~~~e~v~~~~~-g~-~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
...+...+.+. +- ..+.+....+.++ ........++.+.+++.++.+++..|.+. + +.+...+|..+.+.|
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l--~~~~~l~~~~~~~~~~~~e~~lk~~p~~~----~-~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLPLC--LPIPRLKPEDNEKLEKLIEKQAKNVDDKP----K-CCINRALGQLLMKHG 349 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhHHH--HHhhhcCCCChHHHHHHHHHHHHhCCCCh----h-HHHHHHHHHHHHHcc
Confidence 22222222222 00 0000010000122 34445667899999999999999888662 3 467889999999999
Q ss_pred CHHHHHHHHH--HHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 496 LIDRAQEYIT--EAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 496 ~~~~A~e~~~--~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
++++|.++++ .+.+.+|++........++.+.|+.++|.+++++...
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999 5778889666666889999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-10 Score=110.94 Aligned_cols=200 Identities=18% Similarity=0.133 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
..++...||..|++.|++..|..-++.+.++ .+..+.++..+..+|.+.|..+-|.+.+++.|.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls------------ 97 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALS------------ 97 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh------------
Confidence 4567788999999999999999999999985 344555668888888888999888888876654
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
..|++++
T Consensus 98 ---------------------------------------------l~p~~Gd---------------------------- 104 (250)
T COG3063 98 ---------------------------------------------LAPNNGD---------------------------- 104 (250)
T ss_pred ---------------------------------------------cCCCccc----------------------------
Confidence 2232221
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
++-|.|.-+..+|+|++|..||+.|+..--. ...++.+-|++.|.++.|+++.|.+++++++++||
T Consensus 105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y-----~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 105 --------VLNNYGAFLCAQGRPEEAMQQFERALADPAY-----GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred --------hhhhhhHHHHhCCChHHHHHHHHHHHhCCCC-----CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 2336899999999999999999999863211 23457799999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.+.+..-+++.....|++-.|...++....-.+-+.+.|-|++.++...|+...+. .....|.
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~-~Y~~qL~ 234 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQLQ 234 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 88999999999999999999999999998777767789999999999999988774 3444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-08 Score=114.31 Aligned_cols=372 Identities=14% Similarity=0.073 Sum_probs=195.7
Q ss_pred ccCCcchHHHHHHHHHHHHH----HHh-----hccCCChHHHHHH--------------HHHHHHHHHHHH-HccCHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVS----KLD-----ISRISDSDERKLL--------------LDINIARSRTAW-EVLEQNLA 199 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~----~~~-----~~~~~~~~e~~~~--------------l~~l~~rA~~a~-~~g~~~~A 199 (733)
-.|+|..+.++||+++..+- ..+ ++..+ .+-.++. .-.+..-+..+. +.|...++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 37999999999999996532 111 11111 1111110 123444455555 78999999
Q ss_pred HHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCC--------HHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 200 ITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNS--------LNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 200 ~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~--------~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
+++..|++++... ..-......|.-.|.+|-.+-...+ +.++++.|++|.++ ++.|+.
T Consensus 414 ldYA~kai~~~~~--~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d~~dp~--------- 479 (799)
T KOG4162|consen 414 LDYAQKAISLLGG--QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---DPTDPL--------- 479 (799)
T ss_pred HHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---CCCCch---------
Confidence 9999999986522 1112344556667777665522111 67788888888888 654442
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC-chHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI-PECIW 350 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~-~~~~~ 350 (733)
++..|+--|....+.+.|...+..+.+.+ ++.++.++.+.+.++.-.+++.+|+..+...+...+. .....
T Consensus 480 -----~if~lalq~A~~R~l~sAl~~~~eaL~l~---~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 480 -----VIFYLALQYAEQRQLTSALDYAREALALN---RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 56667777777777777777777777653 4567777777777777777777777777666633221 11111
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHh---------h--------------hccCCch--HHHHH---HHH-HHh-------
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLG---------L--------------LGRCHVS--AKAAV---RMA-HRV------- 394 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~---------l--------------l~~~~~~--~~~a~---~~l-~~~------- 394 (733)
+.+.--..-++++.++......+.- . +.+.++. ....+ ..+ .+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 1111000011112222222211110 0 0000100 00000 000 000
Q ss_pred -----hcCCCCCcchHHH-----HHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 395 -----AGDEGDGVSEAAV-----KLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFE 464 (733)
Q Consensus 395 -----l~~~~sp~~~~~l-----~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~ 464 (733)
.. ..+|+..+-. ...+....+..-...+.-|+. +..+.-.-.|-.+...|..+...|++.+|.+.|.
T Consensus 632 ~Lp~s~~-~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~--Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 KLPSSTV-LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL--EASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccCcccc-cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH--HHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 0011111000 000000000000000100111 1111112223344446677777777777777777
Q ss_pred HhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH--HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004720 465 KSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE--YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMT 541 (733)
Q Consensus 465 ~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e--~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~ 541 (733)
.|+.++|.+. .+...+|.|++..|+-.-|.. ....|+++|| ++...|...++....||.+.|.+||.+..
T Consensus 709 ~Al~ldP~hv-------~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 709 VALALDPDHV-------PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHhcCCCCc-------HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 7777777654 245667777777777666666 7777777777 77777777777777777777777777777
Q ss_pred hccCCCh
Q 004720 542 ICLDFTT 548 (733)
Q Consensus 542 ~~~~~~~ 548 (733)
.+.+.+|
T Consensus 782 qLe~S~P 788 (799)
T KOG4162|consen 782 QLEESNP 788 (799)
T ss_pred hhccCCC
Confidence 7666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-09 Score=116.94 Aligned_cols=300 Identities=12% Similarity=0.067 Sum_probs=167.8
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
....+...|...+-.||++.|.+.+.++.+..+. . .-++..-|.++...|+++.|.+++.++.+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~--------p------~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~ 148 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ--------P------VVNYLLAAEAAQQRGDEARANQHLERAAELA 148 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc--------h------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4455667788888889999888877776553210 0 1123344667788999999999999998776
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
|+..-. .....+..++..|+ ++.|...+++..+. .|.+. .+++.++.+|...|+
T Consensus 149 ~~~~~~------~~l~~a~l~l~~g~---~~~Al~~l~~~~~~---~P~~~--------------~al~ll~~~~~~~gd 202 (398)
T PRK10747 149 DNDQLP------VEITRVRIQLARNE---NHAARHGVDKLLEV---APRHP--------------EVLRLAEQAYIRTGA 202 (398)
T ss_pred CcchHH------HHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCCH--------------HHHHHHHHHHHHHHh
Confidence 653211 11122566678888 89999888888887 44322 267788899999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHH-HHHHHHHHhc---CChH---HHHHHH-HHhhhccCCchHHHHhHHHHHHHhch
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLP-VLAMKAWLGL---GRYN---EAELEL-RGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~-~lk~~il~~~---g~~d---eAi~~l-~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
+++|++.+..+.+.. ..+|... -+...++... ...+ ++...+ ...-...+....+.+..+..+...+.
T Consensus 203 w~~a~~~l~~l~k~~----~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 203 WSSLLDILPSMAKAH----VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 999998888888742 2222211 1121221110 0000 111111 11101111111111112222211111
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAV 442 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~l 442 (733)
...+..++.+.+ +..+ ++. +
T Consensus 279 ---------------------~~~A~~~L~~~l--~~~~-~~~------------------------------------l 298 (398)
T PRK10747 279 ---------------------HDTAQQIILDGL--KRQY-DER------------------------------------L 298 (398)
T ss_pred ---------------------HHHHHHHHHHHH--hcCC-CHH------------------------------------H
Confidence 122222222332 1111 110 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFK 522 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~k 522 (733)
. ........++++++++..+.-++-+|.+ +.++..+|..++..+++++|.++++++++.+|+..+...+..
T Consensus 299 ~--~l~~~l~~~~~~~al~~~e~~lk~~P~~-------~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~ 369 (398)
T PRK10747 299 V--LLIPRLKTNNPEQLEKVLRQQIKQHGDT-------PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLAD 369 (398)
T ss_pred H--HHHhhccCCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 0 0111124477777777777777665544 345677777777777777777777777777776666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 004720 523 IYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~ 543 (733)
++.+.|+.++|.++|+.-..+
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 777777777777777765443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-08 Score=121.16 Aligned_cols=325 Identities=12% Similarity=0.083 Sum_probs=168.5
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
++...|+++.|...+.+....... |+. .+|..+-..+.+.|+ .++|..+|++..+. +.. +
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~-pD~-----~tynsLI~~y~k~G~---vd~A~~vf~eM~~~---Gv~-P------- 505 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLK-ADC-----KLYTTLISTCAKSGK---VDAMFEVFHEMVNA---GVE-A------- 505 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCC-CCH-----HHHHHHHHHHHhCcC---HHHHHHHHHHHHHc---CCC-C-------
Confidence 344566666666666666543221 111 123333344445566 66666666655443 210 0
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc--HHHHHHHHHHhcCChHHHHHHHHHhhhc-cC-
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS--LPVLAMKAWLGLGRYNEAELELRGMVEI-KG- 344 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~--~~~lk~~il~~~g~~deAi~~l~~~l~~-~~- 344 (733)
-..+|..+...|.+.|++++|+.+++.+... ...|. ++...+..+.+.|++++|.+.+..|... .+
T Consensus 506 -----dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-----Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 506 -----NVHTFGALIDGCARAGQVAKAFGAYGIMRSK-----NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred -----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 0125566666666666666666666666542 22332 3355556666666666666666555421 11
Q ss_pred Cc-hHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-HHHhhhHH
Q 004720 345 IP-ECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA-VAELVSDE 421 (733)
Q Consensus 345 ~~-~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~-l~~l~~~e 421 (733)
.| ...|-..+..|.+.+. +.|.+.++.+... ...|....+..++.-+.. .+.. ..+.. +.+|...
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~---gi~p~~~tynsLI~ay~k-~G~~-------deAl~lf~eM~~~- 643 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEY---NIKGTPEVYTIAVNSCSQ-KGDW-------DFALSIYDDMKKK- 643 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHh-cCCH-------HHHHHHHHHHHHc-
Confidence 11 2234445555555554 4555555443211 011122222333333321 1111 11111 1111100
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
|- ..+ ...|+ ....+.+.|++++|.+.|........ ......|..+..+|.+.|++++|
T Consensus 644 -------Gv--~PD-----~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~------~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 644 -------GV--KPD-----EVFFSALVDVAGHAGDLDKAFEILQDARKQGI------KLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred -------CC--CCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 00 000 01112 34566778888888888887664321 11234677788888888888888
Q ss_pred HHHHHHHHhh--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 501 QEYITEAEKL--EPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD--FLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 501 ~e~~~~A~~l--dp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~--lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.++|+++... .|+..+.-.+...|.+.|+.++|++.++.|.... ..|| .+...+.-+.+.|+.+.|...+..+.+
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888877543 5577777777788888888888888888876542 2343 122223445567777777777777765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=122.31 Aligned_cols=263 Identities=16% Similarity=0.173 Sum_probs=175.6
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
....++.++|..+..+|+ |+.|..++++|++++.+..+..+ + .-...+..+|..|...++|++|+..|
T Consensus 197 ~~~~~~~~La~~y~~~g~---~e~A~~l~k~Al~~l~k~~G~~h--l-------~va~~l~~~a~~y~~~~k~~eAv~ly 264 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGR---LEKAEPLCKQALRILEKTSGLKH--L-------VVASMLNILALVYRSLGKYDEAVNLY 264 (508)
T ss_pred hHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHccCccC--H-------HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344566669999999999 99999999999999887665221 1 12234456999999999999999999
Q ss_pred HHHHccCC-CCCCCCCcHH---HHHHHHHHhcCChHHHHHHHHHhhhc--c-C--CchHH---HHhHHHHHHHhchhhhH
Q 004720 299 RVLREGSF-DGGDHHASLP---VLAMKAWLGLGRYNEAELELRGMVEI--K-G--IPECI---WVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 299 ~~a~~~~~-~~~~~~p~~~---~lk~~il~~~g~~deAi~~l~~~l~~--~-~--~~~~~---~ls~~~ly~~~~~~~a~ 366 (733)
+.+..+.. ..|+.||.+. ...+..|.+.|++++|..++...|.- . . ....+ ..+.+.++...+.
T Consensus 265 ~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~---- 340 (508)
T KOG1840|consen 265 EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE---- 340 (508)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc----
Confidence 98888665 4578899866 44467788999999999998765521 0 0 00000 0000011110000
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC 446 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~ 446 (733)
.+.++.++.+.+ .+ +...+ |. ....+.-+.=|.
T Consensus 341 -----------------~Eea~~l~q~al-----------------~i--------~~~~~-g~----~~~~~a~~~~nl 373 (508)
T KOG1840|consen 341 -----------------YEEAKKLLQKAL-----------------KI--------YLDAP-GE----DNVNLAKIYANL 373 (508)
T ss_pred -----------------hhHHHHHHHHHH-----------------HH--------HHhhc-cc----cchHHHHHHHHH
Confidence 111111111111 00 00000 11 111223344468
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-------CCC-hHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-------EPN-IASA 517 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-------dp~-~~t~ 517 (733)
|..++++|+|++|.++|+.++.+.. .+...+...++.+.++|..|..++.+.+|.+.|.++..+ .|+ ..+.
T Consensus 374 ~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 374 AELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY 453 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 9999999999999999999996542 111113577899999999999999999999999998765 232 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
..+..+|-..|++|.|++..+.+...-
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 578999999999999999888887543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-10 Score=110.46 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
.+........+..|.+++..|++..|..-++||++..|..+ +....+|..|..+|+.+.|.+.|.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--------------~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--------------LAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--------------HHHHHHHHHHHHcCChhhHHHHHHH
Confidence 44555567778999999999999999999999999887533 3445668899999999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y 285 (733)
|+.++|... ++++|+|-.+..+|. |++|-.||++|+.- |.+.. ...++.+++.|-
T Consensus 95 Alsl~p~~G-------dVLNNYG~FLC~qg~---~~eA~q~F~~Al~~----P~Y~~-----------~s~t~eN~G~Ca 149 (250)
T COG3063 95 ALSLAPNNG-------DVLNNYGAFLCAQGR---PEEAMQQFERALAD----PAYGE-----------PSDTLENLGLCA 149 (250)
T ss_pred HHhcCCCcc-------chhhhhhHHHHhCCC---hHHHHHHHHHHHhC----CCCCC-----------cchhhhhhHHHH
Confidence 999999876 479999999999999 99999999999984 43321 234899999999
Q ss_pred hccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 286 LQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 286 l~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
++.|++++|.++++.+... .+..|....-+.+.+++.|+|-+|...+....
T Consensus 150 l~~gq~~~A~~~l~raL~~----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 150 LKAGQFDQAEEYLKRALEL----DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred hhcCCchhHHHHHHHHHHh----CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999987 46888888999999999999999999987665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=126.07 Aligned_cols=234 Identities=13% Similarity=0.004 Sum_probs=170.2
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc---------cCcHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ---------KGEYES 293 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~---------~~~~ek 293 (733)
.+|..|..++.+.....+++|+..|++|+++ +|.+. ..+..||.+|.. .+++++
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a--------------~a~~~La~~~~~~~~~g~~~~~~~~~~ 322 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSI--------------APYCALAECYLSMAQMGIFDKQNAMIK 322 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccH--------------HHHHHHHHHHHHHHHcCCcccchHHHH
Confidence 4666787666654433389999999999998 65332 255666766642 235899
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVF 373 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l 373 (733)
|+.+++.+.+. ++.+|.++...+.++...|++++|+..+.+.+..
T Consensus 323 A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------------------- 367 (553)
T PRK12370 323 AKEHAIKATEL----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL------------------------------- 367 (553)
T ss_pred HHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------
Confidence 99999999886 5678888888899999999999999998766532
Q ss_pred HhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc
Q 004720 374 LGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS 453 (733)
Q Consensus 374 ~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~ 453 (733)
.|++... +.+.|..++..
T Consensus 368 --------------------------~P~~~~a------------------------------------~~~lg~~l~~~ 385 (553)
T PRK12370 368 --------------------------SPISADI------------------------------------KYYYGWNLFMA 385 (553)
T ss_pred --------------------------CCCCHHH------------------------------------HHHHHHHHHHC
Confidence 2222111 12368888999
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-C-ChHHHHHHHHHHHhcCCHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE-P-NIASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld-p-~~~t~~~~~ki~l~~gd~e 531 (733)
|+|++|+.+|+.++...|.+.. .+..++..+...|++++|++.+.++++.. | ++..+.++..++...|+.+
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRAA-------AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCChh-------hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999986532 23445556777899999999999998875 6 6777888999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 532 GAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
+|.+.++++....+.+..............| +.+...|+.+++...
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9999998886665443333333333333333 467777888777443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-07 Score=116.78 Aligned_cols=334 Identities=10% Similarity=0.051 Sum_probs=208.1
Q ss_pred hHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH
Q 004720 140 VVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS 219 (733)
Q Consensus 140 ~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~ 219 (733)
.+|.+.|+++.|...|+++.+.-. . ++ ...+..-...+.+.|+.+.|...+++....... |+.
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl----~---pD------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-Pdv--- 507 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGL----K---AD------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANV--- 507 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCC----C---CC------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCH---
Confidence 345677888888888877664210 0 11 112222245666788888888888887754221 211
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
..|..+-..+.+.|+ +++|...|.+..+. +. .+. ..+|..|..+|.+.|++++|.+.++
T Consensus 508 --vTynaLI~gy~k~G~---~eeAl~lf~~M~~~---Gv-~PD------------~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 508 --HTFGALIDGCARAGQ---VAKAFGAYGIMRSK---NV-KPD------------RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred --HHHHHHHHHHHHCcC---HHHHHHHHHHHHHc---CC-CCC------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 234455566667777 88888887776553 21 111 1267777888888888888888887
Q ss_pred HHHccCCCCCCCCCc--HHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 300 VLREGSFDGGDHHAS--LPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~--~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
.+.... .+..|. ++...+..|.+.|++++|++.+..|.... ......|..++..|.+.+. +.|.+.++.+..
T Consensus 567 eM~~~~---~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~- 642 (1060)
T PLN03218 567 EMKAET---HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK- 642 (1060)
T ss_pred HHHHhc---CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Confidence 776421 123343 44566677888888888888887776332 3344556667777777766 667766665432
Q ss_pred hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH-HHhhhHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhc
Q 004720 376 LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV-AELVSDERVLALFVGDAAAKERIAMHAVLWN-CASILFRS 453 (733)
Q Consensus 376 ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l-~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~ 453 (733)
....|+......+++-+.. .+. ...+..+ .++.. .|.. . ....|+ ....+.+.
T Consensus 643 --~Gv~PD~~TynsLI~a~~k-~G~-------~eeA~~l~~eM~k--------~G~~------p-d~~tynsLI~ay~k~ 697 (1060)
T PLN03218 643 --KGVKPDEVFFSALVDVAGH-AGD-------LDKAFEILQDARK--------QGIK------L-GTVSYSSLMGACSNA 697 (1060)
T ss_pred --cCCCCCHHHHHHHHHHHHh-CCC-------HHHHHHHHHHHHH--------cCCC------C-CHHHHHHHHHHHHhC
Confidence 1123332333333333321 111 1111111 11100 0000 0 011223 56788999
Q ss_pred CCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCChHHHHHHHHHHHhcCC
Q 004720 454 KDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--EPNIASAFLKFKIYLQKND 529 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--dp~~~t~~~~~ki~l~~gd 529 (733)
|++++|.++|+.... +.| + ...|..+..+|.+.|++++|.++++++.+. .|+..|...+...+.+.|+
T Consensus 698 G~~eeA~~lf~eM~~~g~~P-------d-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRP-------T-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999998653 222 1 246899999999999999999999998654 5788888888899999999
Q ss_pred HHHHHHHHHHHHhccCCChH
Q 004720 530 QEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~~ 549 (733)
.++|.+.+..|.+.. ..||
T Consensus 770 le~A~~l~~~M~k~G-i~pd 788 (1060)
T PLN03218 770 ADVGLDLLSQAKEDG-IKPN 788 (1060)
T ss_pred HHHHHHHHHHHHHcC-CCCC
Confidence 999999999998753 3444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-08 Score=109.90 Aligned_cols=300 Identities=14% Similarity=0.039 Sum_probs=201.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHH-hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF-AKSALSKNETNSLNDALKLMNEALELCEKGLGEART 263 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~-G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~ 263 (733)
.++-.++..||++.|...+.++.+..+ .| .++|.+ +......|+ ++.|..+|+++.+. ++.+.
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p-------~l~~llaA~aA~~~g~---~~~A~~~l~~A~~~---~~~~~-- 152 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAE-QP-------VVNYLLAAEAAQQRGD---EARANQHLERAAEL---ADNDQ-- 152 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccc-ch-------HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCcch--
Confidence 445567778999999987777654321 22 234544 445588999 99999999999886 43221
Q ss_pred chhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 004720 264 REETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK 343 (733)
Q Consensus 264 ~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~ 343 (733)
.-.....+..++..|++++|+..++.+.+. ++.+|.+..+...++...|+.++|+..+..+....
T Consensus 153 -----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 153 -----------LPVEITRVRIQLARNENHAARHGVDKLLEV----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 112223488999999999999999999886 57899999999999999999999998887776433
Q ss_pred CCchHHHHhH-HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 344 GIPECIWVSA-VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 344 ~~~~~~~ls~-~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
..+....-.. ...| ..++.......+ ...+..++ +.-|
T Consensus 218 ~~~~~~~~~l~~~a~------------~~l~~~~~~~~~------~~~l~~~w--~~lp--------------------- 256 (398)
T PRK10747 218 VGDEEHRAMLEQQAW------------IGLMDQAMADQG------SEGLKRWW--KNQS--------------------- 256 (398)
T ss_pred CCCHHHHHHHHHHHH------------HHHHHHHHHhcC------HHHHHHHH--HhCC---------------------
Confidence 3222210000 0000 000000000000 00011111 0001
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
...+....++ -..+..+...|++++|.+..+.++.. +.++ ... +...++..++.+++.+
T Consensus 257 --------~~~~~~~~~~---~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~----~l~-----~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 257 --------RKTRHQVALQ---VAMAEHLIECDDHDTAQQIILDGLKR-QYDE----RLV-----LLIPRLKTNNPEQLEK 315 (398)
T ss_pred --------HHHhCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH----HHH-----HHHhhccCCChHHHHH
Confidence 0000011111 12688889999999999999999984 3332 111 2233345599999999
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 503 YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 503 ~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+++.++.+| ++...+...++++..|++++|.+++++..+..+.+++++.++ +...+.|+.+.+....+.-+...
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La-~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLA-DALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999 899999999999999999999999999999987777766664 66667889999987777666633
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=112.67 Aligned_cols=336 Identities=14% Similarity=0.086 Sum_probs=223.9
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHH-----------HHH-Hhhc-------c------CCCh-HH-------
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEI-----------VSK-LDIS-------R------ISDS-DE------- 175 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~-----------~~~-~~~~-------~------~~~~-~e------- 175 (733)
...+....--|+.+....|+.+|-.+|.+|+-. ++. +.+. . -.++ .+
T Consensus 138 ~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lye 217 (611)
T KOG1173|consen 138 NLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYE 217 (611)
T ss_pred cchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHH
Confidence 334566677899999999999999999988721 110 0000 0 0000 00
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh
Q 004720 176 ----------------------RKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS 233 (733)
Q Consensus 176 ----------------------~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~ 233 (733)
.....+++..+|.-+...++|.......+...+.+|=.++-. -..+| ++..
T Consensus 218 l~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~------~~~ia-~l~e 290 (611)
T KOG1173|consen 218 LKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL------PLHIA-CLYE 290 (611)
T ss_pred hhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH------HHHHH-HHHH
Confidence 001457888889999999999999999999998887544321 22445 5556
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC
Q 004720 234 KNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA 313 (733)
Q Consensus 234 ~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p 313 (733)
.|+. -++|.-+.++.+..|. ++-.|...|.=|+-.|.+++|.+|+.++-.+ ++...
T Consensus 291 l~~~------n~Lf~lsh~LV~~yP~--------------~a~sW~aVg~YYl~i~k~seARry~SKat~l----D~~fg 346 (611)
T KOG1173|consen 291 LGKS------NKLFLLSHKLVDLYPS--------------KALSWFAVGCYYLMIGKYSEARRYFSKATTL----DPTFG 346 (611)
T ss_pred hccc------chHHHHHHHHHHhCCC--------------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhc----Ccccc
Confidence 6662 2334444455333331 1226888888888889999999999999876 34555
Q ss_pred cHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHH
Q 004720 314 SLPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMA 391 (733)
Q Consensus 314 ~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l 391 (733)
.++.--+..+...|..|+|+..+...-+-.+ .-+.. +-++--|+..+. ..|-+++..
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~-LYlgmey~~t~n~kLAe~Ff~~-------------------- 405 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS-LYLGMEYMRTNNLKLAEKFFKQ-------------------- 405 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-HHHHHHHHHhccHHHHHHHHHH--------------------
Confidence 5667777888888899999888765432222 11111 112222332222 333333331
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 004720 392 HRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP 471 (733)
Q Consensus 392 ~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~ 471 (733)
.+ ...|.|+- ++-..|...|+.+.|.+|+.||+.++...+
T Consensus 406 --A~--ai~P~Dpl------------------------------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 406 --AL--AIAPSDPL------------------------------------VLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred --HH--hcCCCcch------------------------------------hhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 11 12232321 111278999999999999999999995444
Q ss_pred -CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--
Q 004720 472 -FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-- 547 (733)
Q Consensus 472 -~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-- 547 (733)
.+.+. +.-.-++.|+|-.|.+++.+++|+.++++|+.+.| ++.++-..+-||...||.+.|+..+.+...+.+++
T Consensus 446 ~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 446 SVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred hccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 22222 23455799999999999999999999999999999 89999999999999999999999999998887654
Q ss_pred -hHHHHHHHHH
Q 004720 548 -TDFLSLAAHE 557 (733)
Q Consensus 548 -~~lL~la~~~ 557 (733)
.++|..|++.
T Consensus 525 ~~~lL~~aie~ 535 (611)
T KOG1173|consen 525 ISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHh
Confidence 3577766554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-09 Score=112.54 Aligned_cols=248 Identities=13% Similarity=0.064 Sum_probs=184.2
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHH-----------HHhhccCCChHHHHHHH------------HHHHHHHHHHHHc
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVS-----------KLDISRISDSDERKLLL------------DINIARSRTAWEV 193 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~-----------~~~~~~~~~~~e~~~~l------------~~l~~rA~~a~~~ 193 (733)
++|...+...+++.|+..|+.-..-.| .+|... +..+-..+ ...|.-|.-|...
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~---~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN---DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh---hhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 467788889999999999998886533 122211 10111111 2333447777888
Q ss_pred cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhc
Q 004720 194 LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGL 273 (733)
Q Consensus 194 g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el 273 (733)
+++++|+.+++||+.++|... .+..-||-.+...++ -..|+..|.+|+++ +|.+
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~-------~aWTLmGHEyvEmKN---t~AAi~sYRrAvdi---~p~D------------- 397 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYL-------SAWTLMGHEYVEMKN---THAAIESYRRAVDI---NPRD------------- 397 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchh-------HHHHHhhHHHHHhcc---cHHHHHHHHHHHhc---Cchh-------------
Confidence 999999999999999999733 356789999999999 89999999999999 5533
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
.+.|..||++|--.+...=|+.+++.+.+. .+.+|-.+...++||.+.++.++|++.+.+.+...+..-..++++
T Consensus 398 -yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 398 -YRAWYGLGQAYEIMKMHFYALYYFQKALEL----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred -HHHHhhhhHHHHHhcchHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 348999999999999888899999999986 467888999999999999999999999999887667666778899
Q ss_pred HHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchh
Q 004720 354 VEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAA 432 (733)
Q Consensus 354 ~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~ 432 (733)
+++|.+... ..|..++.+.+. .... .+..++ +
T Consensus 473 akLye~l~d~~eAa~~yek~v~------------------~~~~-eg~~~~-----------------~----------- 505 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE------------------VSEL-EGEIDD-----------------E----------- 505 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH------------------HHHh-hcccch-----------------H-----------
Confidence 999987766 455555553321 0000 111111 0
Q ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 004720 433 AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP 471 (733)
Q Consensus 433 ~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~ 471 (733)
.+-+.+| .+.-.++.++|++|-.+...++...+
T Consensus 506 -----t~ka~~f-LA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 506 -----TIKARLF-LAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred -----HHHHHHH-HHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 1122444 67777899999999999999988743
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-08 Score=115.87 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=177.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ 355 (733)
++..|...|.+.|++++|.+.++.+.. .+..++...+..|.+.|++++|+..+..|.... ......|...+.
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE-------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC-------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 556678888888888888888876643 345666777788888888888888887776332 223334556667
Q ss_pred HHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 356 AYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 356 ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
.|.+.+. +.|.+.+..++..- ..++......+++-+. +....+.+.++|..-.. +
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g---~~~d~~~~~~Li~~y~--------------------k~G~~~~A~~vf~~m~~-~ 389 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTG---FPLDIVANTALVDLYS--------------------KWGRMEDARNVFDRMPR-K 389 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhC---CCCCeeehHHHHHHHH--------------------HCCCHHHHHHHHHhCCC-C
Confidence 6665555 44444444332110 1111111122222221 11112223333331110 0
Q ss_pred HhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-
Q 004720 435 ERIAMHAVLWN-CASILFRSKDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL- 510 (733)
Q Consensus 435 ~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l- 510 (733)
....|| ....+.+.|++++|++.|+.... +.|. ...|..+..++.+.|.+++|.++++++.+.
T Consensus 390 -----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd--------~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 390 -----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN--------HVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred -----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 224567 67788999999999999999664 3332 235888889999999999999999998653
Q ss_pred --CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCch
Q 004720 511 --EPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD--FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPT 586 (733)
Q Consensus 511 --dp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~--lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~ 586 (733)
.|+..++..+...+.+.|+.++|.+.++.+. ..|+ ....-+.-+...|+.+.+..+++.+++....+...+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y- 531 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY- 531 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch-
Confidence 4566777778999999999999999887653 3343 222223445678999999999999987433321111
Q ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 004720 587 KEVVVLRTIVTILTQETGNESEVLKYMKRAHA 618 (733)
Q Consensus 587 ~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~ 618 (733)
-.++.+.. ..|..+++.+.++...+
T Consensus 532 ------~~L~~~y~-~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 532 ------VVLLNLYN-SSGRQAEAAKVVETLKR 556 (697)
T ss_pred ------HHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 12333222 23556666666665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-08 Score=103.51 Aligned_cols=359 Identities=13% Similarity=0.077 Sum_probs=233.4
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHH---HHh--hccCCChHHHH-H-H------HHHHH--HHHHHHHHccCHHH
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVS---KLD--ISRISDSDERK-L-L------LDINI--ARSRTAWEVLEQNL 198 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~---~~~--~~~~~~~~e~~-~-~------l~~l~--~rA~~a~~~g~~~~ 198 (733)
..+-.|...-+.|+..+|...|-..+...| .+. .++.-++.+.. . . +-.++ .-..++-...+++.
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 344568888899999999999999886322 111 11000111111 1 0 00111 12334446668888
Q ss_pred HHHHHHHHHhh-hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 199 AITLLNRAKCL-LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 199 A~~~~~rA~~l-~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
++.-+.+-..+ -|.++. +-...|.+.+...| +++|+..|+....- +|- +-+ -
T Consensus 246 ~~~k~e~l~~~gf~~~~~-------i~~~~A~~~y~~rD---fD~a~s~Feei~kn---DPY----Rl~----------d 298 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMY-------IKTQIAAASYNQRD---FDQAESVFEEIRKN---DPY----RLD----------D 298 (559)
T ss_pred HHHHHHHHHhccCCccHH-------HHHHHHHHHhhhhh---HHHHHHHHHHHHhc---CCC----cch----------h
Confidence 88888777766 333432 22356777789999 99999888876654 441 111 1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
+-...+++.-.++-.+--..-..+-++ ++..|.+--.-+.-|.-.++.++|+.++++.+...+.....|+-++--|
T Consensus 299 mdlySN~LYv~~~~skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 299 MDLYSNVLYVKNDKSKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEY 374 (559)
T ss_pred HHHHhHHHHHHhhhHHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHH
Confidence 222233332222212211122222233 3455654444455556667899999999999977788888888887778
Q ss_pred HHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 358 FQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 358 ~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
++.++ ..|++.+++. + +-.|.|-.+|++
T Consensus 375 vEmKNt~AAi~sYRrA----------------------v--di~p~DyRAWYG--------------------------- 403 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRA----------------------V--DINPRDYRAWYG--------------------------- 403 (559)
T ss_pred HHhcccHHHHHHHHHH----------------------H--hcCchhHHHHhh---------------------------
Confidence 88877 7778888743 3 455655444433
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.|-.|.-.+-.-=|+-+|++|+.+-|.|. .+...||.||.++++.++|+..|.+|..... +-.
T Consensus 404 ---------LGQaYeim~Mh~YaLyYfqkA~~~kPnDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 404 ---------LGQAYEIMKMHFYALYYFQKALELKPNDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred ---------hhHHHHHhcchHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 56677777777889999999999988764 5789999999999999999999999999977 888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc----CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchh
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICL----DFTTD----FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTK 587 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~----~~~~~----lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~ 587 (733)
....++++|-+.+|.++|.+++++...-. ..++. .+.|| ..-.+.++.+.|.-.....+. . .+.-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA-~~f~k~~~~~~As~Ya~~~~~-~---~~e~ee 542 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLA-EYFKKMKDFDEASYYATLVLK-G---ETECEE 542 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHhhcchHHHHHHHHHHhc-C---CchHHH
Confidence 89999999999999999999998887633 12332 34443 555667888887654444444 2 222445
Q ss_pred HHHHHHHH
Q 004720 588 EVVVLRTI 595 (733)
Q Consensus 588 ~~~~lR~l 595 (733)
.-.++|-+
T Consensus 543 ak~LlRei 550 (559)
T KOG1155|consen 543 AKALLREI 550 (559)
T ss_pred HHHHHHHH
Confidence 55666654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-08 Score=101.79 Aligned_cols=362 Identities=13% Similarity=0.090 Sum_probs=221.7
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 004720 108 RHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARS 187 (733)
Q Consensus 108 R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA 187 (733)
+|+|--|-.........|...+ -..+.|.+|+..|+-.-|+.-|++.+++-|... ..=+.|+
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~----aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--------------~ARiQRg 113 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQ----AIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--------------AARIQRG 113 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHH----HHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--------------HHHHHhc
Confidence 4555545444444444343332 123445566666666667777777776655322 1223446
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCc---hhHHHHHH-----HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLF---EHYKSLAN-----QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~---~~~~~La~-----~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
.+.+.+|+++.|+.++...++-.|... +....++. .+-..-+.++..|| +..++..+...+++ .+=
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD---~~~ai~~i~~llEi---~~W 187 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD---CQNAIEMITHLLEI---QPW 187 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc---hhhHHHHHHHHHhc---Ccc
Confidence 788899999999999999999888522 33333332 23344667777888 99999999999998 442
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+ +..++..+.||..-|+..+|+.=+..+.+. ...+..+.|--..+++..|+...++.+++..
T Consensus 188 d--------------a~l~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 188 D--------------ASLRQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred h--------------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 224455599999999999999888888775 3455677788889999999999999999888
Q ss_pred hh-ccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 340 VE-IKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 340 l~-~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
+. +++- .. ++-+|.+... .+.++..+..+ .+.....++..-+.++ +..|..+.
T Consensus 250 LKldpdH--K~---Cf~~YKklkKv~K~les~e~~i------e~~~~t~cle~ge~vl--k~ep~~~~------------ 304 (504)
T KOG0624|consen 250 LKLDPDH--KL---CFPFYKKLKKVVKSLESAEQAI------EEKHWTECLEAGEKVL--KNEPEETM------------ 304 (504)
T ss_pred HccCcch--hh---HHHHHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHH--hcCCcccc------------
Confidence 73 3321 11 1222221111 11111111000 0000001111111111 11111100
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL 496 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~ 496 (733)
+..-.+. ....+-+.+++-+||.-++.+|.+.|.| +.++.-+|.+|+.-.+
T Consensus 305 ---------------------ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d-------v~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 305 ---------------------IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD-------VQVLCDRAEAYLGDEM 356 (504)
T ss_pred ---------------------eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHhhhHH
Confidence 0000001 1233457799999999999999998744 5678999999999999
Q ss_pred HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 004720 497 IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL-SLAAHEAVACQALSVAVAALSNL 574 (733)
Q Consensus 497 ~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL-~la~~~a~~~~~~~~a~~aL~~L 574 (733)
||.|+..|++|.+.+| +... .+.++.-+++.+... ..|+. ++++ .++.+....++|..++
T Consensus 357 YD~AI~dye~A~e~n~sn~~~--------------reGle~Akrlkkqs~-kRDYYKILGV---kRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRA--------------REGLERAKRLKKQSG-KRDYYKILGV---KRNASKQEITKAYRKL 418 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHH--------------HHHHHHHHHHHHHhc-cchHHHHhhh---cccccHHHHHHHHHHH
Confidence 9999999999999988 3321 123334445555544 35533 4444 3577788888999999
Q ss_pred HhhhcCCC
Q 004720 575 LNFYTSGK 582 (733)
Q Consensus 575 l~~~~~~~ 582 (733)
-++.-+|.
T Consensus 419 AqkWHPDN 426 (504)
T KOG0624|consen 419 AQKWHPDN 426 (504)
T ss_pred HHhcCCcc
Confidence 99876653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=121.96 Aligned_cols=262 Identities=14% Similarity=0.069 Sum_probs=93.3
Q ss_pred HHHHHHhccCcHHHHHHHHHH-HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHH
Q 004720 280 FISAIHLQKGEYESVIKCVRV-LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYF 358 (733)
Q Consensus 280 ~La~~yl~~~~~ekAl~~l~~-a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~ 358 (733)
.+|.++...|++++|+.+++. +.... .+.++..+.+.+.+....+++++|+..+..++...+.....+...+.++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 359999999999999999954 44431 24566666777888888999999999999988555444444445555533
Q ss_pred HhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhH
Q 004720 359 QAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIA 438 (733)
Q Consensus 359 ~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~ 438 (733)
....+.|++.+...+. + ++ ++..+..-+.........+.+.+.+..-........
T Consensus 90 ~~~~~~A~~~~~~~~~----~--------------------~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYE----R--------------------DG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred cccccccccccccccc----c--------------------cc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence 2222455554443211 0 10 111110111111111222223333221000000111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHH
Q 004720 439 MHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 439 ~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~ 517 (733)
-..++...|..+.+.|++++|++.|+.++...|.+. .+...++..++..|+++++++.+....+..| ++...
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~-------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP-------DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H-------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 122333488889999999999999999999888653 3567788889999999999999988877766 66666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
...+.++...|++++|+..+++..+..+.+|.++..-+......|+.+.|......++.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77788899999999999999999998888888777777777788888888766665554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-07 Score=109.24 Aligned_cols=354 Identities=9% Similarity=-0.044 Sum_probs=216.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
.++-...++|+++.|+..+.++...+|..+...- .+...+...|+ +++|+.+++++.+ +.+.
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-------dll~l~~~~G~---~~~A~~~~eka~~-----p~n~--- 100 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-------DWLQIAGWAGR---DQEVIDVYERYQS-----SMNI--- 100 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-------HHHHHHHHcCC---cHHHHHHHHHhcc-----CCCC---
Confidence 3455666899999999999999999998653322 33333345578 8999999999982 2111
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
-...+..+|..|...|+|++|+..++.+.+. .+.+|.+++..+.++...+++++|+..+..++...+
T Consensus 101 ---------~~~~llalA~ly~~~gdyd~Aiely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 101 ---------SSRGLASAARAYRNEKRWDQALALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence 1125566688999999999999999999986 466788777667888899999999999998885444
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCch-HHHHHH---HHHHhhc-------CCCCCc---chHHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVS-AKAAVR---MAHRVAG-------DEGDGV---SEAAVKL 409 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~-~~~a~~---~l~~~l~-------~~~sp~---~~~~l~~ 409 (733)
. ...++..+.++..... ..+++.+++++. .+|+ ...... ++.+.=. ++..|+ ..+...-
T Consensus 168 ~-~~~~l~layL~~~~~~~~~AL~~~ekll~-----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 168 T-VQNYMTLSYLNRATDRNYDALQASSEAVR-----LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred c-hHHHHHHHHHHHhcchHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 3 2222333333322112 346666665532 2232 111111 1111100 000110 0000000
Q ss_pred HHHHHHHhh---------hHHH---HHHHhhcc-hh-------HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 410 RAKAVAELV---------SDER---VLALFVGD-AA-------AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 410 ka~~l~~l~---------~~e~---v~~~~~g~-~~-------~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
....+.+++ ..++ +...+... .+ +........+.-+.--.+.+.|++.++++-|+.--..
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 000000000 0000 00001000 00 0011111223334556677889999999999875421
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 470 LPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-------NIASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 470 ~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-------~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
-..- |+ -+....|-.|+.+++.++|..+|..++.-+| ....+.-+|-.++..+++++|...++.+..
T Consensus 322 ~~~~----P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 322 GYKM----PD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred CCCC----CH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 1000 22 3578899999999999999999999987653 233356789999999999999999999998
Q ss_pred ccC------------CChH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 543 CLD------------FTTD---FLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 543 ~~~------------~~~~---lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..+ .+|| ...+.++...-.|+.+.|++.|+.++..-+.+
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 443 1344 44445566667899999999999999854443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-07 Score=115.72 Aligned_cols=320 Identities=12% Similarity=0.036 Sum_probs=178.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh--hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCL--LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l--~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
...+.+.|++++|+.++++.... .|+.. .|..+=..+.+.|+ ++++...++.+.+. +...
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~--------t~~~ll~a~~~~g~---~~~a~~l~~~~~~~---g~~~---- 422 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEI--------TIASVLSACACLGD---LDVGVKLHELAERK---GLIS---- 422 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCce--------eHHHHHHHHhccch---HHHHHHHHHHHHHh---CCCc----
Confidence 44555666666666666655432 22211 11112123334555 66666666555543 2100
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
-..++..|...|.+.|++++|.+.++.+.. .+...+...+..+.+.|++++|+..+..|+....
T Consensus 423 ---------~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~ 486 (857)
T PLN03077 423 ---------YVVVANALIEMYSKCKCIDKALEVFHNIPE-------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486 (857)
T ss_pred ---------chHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 012556666777777777777766665533 2334455556666667777777777766653322
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERV 423 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v 423 (733)
.....+.+.+..+...+. +.+.+....++..-+ .++....-.+++-+ .+....+..
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~---~~~~~~~naLi~~y--------------------~k~G~~~~A 543 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGI---GFDGFLPNALLDLY--------------------VRCGRMNYA 543 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC---CccceechHHHHHH--------------------HHcCCHHHH
Confidence 222233444444443333 223232222211100 00000001111111 111112223
Q ss_pred HHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 424 LALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 424 ~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
...|... .-....|| ....+.+.|++++|++.|+.-.. +.|.. ..|..+..+|.+.|.+++|
T Consensus 544 ~~~f~~~-------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~--------~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 544 WNQFNSH-------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE--------VTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHhc-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--------ccHHHHHHHHhhcChHHHH
Confidence 3333311 11234577 66788899999999999998654 33432 2467777889999999999
Q ss_pred HHHHHHHHhh---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 501 QEYITEAEKL---EPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 501 ~e~~~~A~~l---dp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.++++++.+. .|++.++..+...+.+.|+.++|.+.++.|.- .+ ++.....-..-+...++.+.+..+.+.+++.
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~-~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI-TP-DPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999998743 56777888899999999999999999998842 11 2222222222335588999999999999985
Q ss_pred hcC
Q 004720 578 YTS 580 (733)
Q Consensus 578 ~~~ 580 (733)
-+.
T Consensus 687 ~p~ 689 (857)
T PLN03077 687 DPN 689 (857)
T ss_pred CCC
Confidence 433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-07 Score=114.10 Aligned_cols=356 Identities=13% Similarity=0.073 Sum_probs=202.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
...+.+.|++++|+..+.+...... .|+. ..|..+-..+...|+ .+.+...+....+. +.. +
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~-~Pd~-----~ty~~ll~a~~~~g~---~~~a~~l~~~~~~~---g~~-----~- 321 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSV-DPDL-----MTITSVISACELLGD---ERLGREMHGYVVKT---GFA-----V- 321 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC-CCCh-----hHHHHHHHHHHhcCC---hHHHHHHHHHHHHh---CCc-----c-
Confidence 3455677777777777777664321 1211 113333334445566 66666666555443 210 0
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-C
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG-I 345 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~ 345 (733)
-..++..|...|.+.|++++|.+.++.+.. .++..+...+..|.+.|++++|+..+..|....- .
T Consensus 322 -------d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 322 -------DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred -------chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 123677888888888888888888887643 3455667777888888889988888887763322 2
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
....+.+.+..+...+. +.|.+.+..+... + ..++......+++-+.. ....+.+.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~--g-~~~~~~~~n~Li~~y~k--------------------~g~~~~A~ 444 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERK--G-LISYVVVANALIEMYSK--------------------CKCIDKAL 444 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHh--C-CCcchHHHHHHHHHHHH--------------------cCCHHHHH
Confidence 22334455555555544 4555554433211 0 11111222222232221 11112222
Q ss_pred HHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhh-------------------------
Q 004720 425 ALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRI------------------------- 478 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~------------------------- 478 (733)
++|..-.. + ....|+ ....+.+.|++++|++.|+..+.-.++|.....
T Consensus 445 ~vf~~m~~-~-----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 445 EVFHNIPE-K-----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHhCCC-C-----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 33321100 0 123455 566778889999999999887642222211000
Q ss_pred ---hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH---HHH
Q 004720 479 ---LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD---FLS 552 (733)
Q Consensus 479 ---~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~---lL~ 552 (733)
....++..+...|.+.|++++|.+.|+++ .|++.+...+...|.+.|+.++|++.++.|.... ..|| +..
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ 594 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFIS 594 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHH
Confidence 00112345567888889999999888876 5588888888889999999999999999998743 3343 333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 004720 553 LAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMK 614 (733)
Q Consensus 553 la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~ 614 (733)
+ ..-+.+.|..+.+...++.+.+.+.-. |. +..+-|+|.++.+ .|..++..+.++
T Consensus 595 l-l~a~~~~g~v~ea~~~f~~M~~~~gi~---P~--~~~y~~lv~~l~r-~G~~~eA~~~~~ 649 (857)
T PLN03077 595 L-LCACSRSGMVTQGLEYFHSMEEKYSIT---PN--LKHYACVVDLLGR-AGKLTEAYNFIN 649 (857)
T ss_pred H-HHHHhhcChHHHHHHHHHHHHHHhCCC---Cc--hHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 3 234556788888888888887544332 32 1334456666543 244444444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-06 Score=101.16 Aligned_cols=316 Identities=14% Similarity=0.050 Sum_probs=199.4
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
.+...+...+.+|+ +++|...+.+++.. +|.+. ..|..||.+|-+.|+.+||+.+--++-
T Consensus 141 ~ll~eAN~lfarg~---~eeA~~i~~EvIkq---dp~~~--------------~ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 141 QLLGEANNLFARGD---LEEAEEILMEVIKQ---DPRNP--------------IAYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHh---Cccch--------------hhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45556677788899 99999999988887 65332 278899999999999999998865554
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCC
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~ 381 (733)
-. ++.++.-+..-.....+.|..++|+-++.+.|.-.|..-.+...=..+|.+++. ..|.+++..++. .+.
T Consensus 201 HL----~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~----~~p 272 (895)
T KOG2076|consen 201 HL----NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ----LDP 272 (895)
T ss_pred hc----CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh----hCC
Confidence 43 456667778888888899999999999999995445444555566777877776 677777776542 111
Q ss_pred ch-----HHHHHHHHHHhhcCCCCCcchHHH-------------------HHHHHHHHHhhhHHHHHHHhh-cch--h--
Q 004720 382 VS-----AKAAVRMAHRVAGDEGDGVSEAAV-------------------KLRAKAVAELVSDERVLALFV-GDA--A-- 432 (733)
Q Consensus 382 ~~-----~~~a~~~l~~~l~~~~sp~~~~~l-------------------~~ka~~l~~l~~~e~v~~~~~-g~~--~-- 432 (733)
|. ......+++-|.. ..+...++ .--+.++.+....+.+...+. +.. .
T Consensus 273 ~~d~er~~d~i~~~~~~~~~---~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFIT---HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred chhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 21 1122222333321 00000000 000000000011111111111 000 0
Q ss_pred ---------------------HHHhhHHHHH-HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH
Q 004720 433 ---------------------AKERIAMHAV-LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC 490 (733)
Q Consensus 433 ---------------------~~~~~~~~~l-lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c 490 (733)
+++.+....+ .-.-+-.+.+..+-.+|+.-+..--.+. ..+...++..++..
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~------~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW------VSDDVDLYLDLADA 423 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC------hhhhHHHHHHHHHH
Confidence 0001111111 1112233333333333333332211111 13567889999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHH
Q 004720 491 YLGLSLIDRAQEYITEAEKLEP--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAV 568 (733)
Q Consensus 491 yl~l~~~~~A~e~~~~A~~ldp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~ 568 (733)
|...|+|+.|..++......++ +....+.++.+|...|.+++|+++|+++....+++.|..+--+.+-.+.|+.+.|.
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Confidence 9999999999999999888877 66777889999999999999999999999999988887666667888899999777
Q ss_pred HHHHHHH
Q 004720 569 AALSNLL 575 (733)
Q Consensus 569 ~aL~~Ll 575 (733)
.+|+.+.
T Consensus 504 EtL~~~~ 510 (895)
T KOG2076|consen 504 ETLEQII 510 (895)
T ss_pred HHHhccc
Confidence 7777665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-07 Score=110.84 Aligned_cols=263 Identities=11% Similarity=0.019 Sum_probs=165.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ 355 (733)
+|..+...|...|++++|+.+++.+.... -..+..++...+.++.+.|++++|.+.+..++... +....++..++.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSG---VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 68888888888898999988888886621 12233455667788888888888888887777433 334455666778
Q ss_pred HHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-HHHhhhHHHHHHHhhcchhH
Q 004720 356 AYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA-VAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 356 ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~-l~~l~~~e~v~~~~~g~~~~ 433 (733)
.|.+.+. +.|.+.++.+ ..++...+..++.-+.. .+.. .+|.. +.++... |
T Consensus 369 ~y~k~G~~~~A~~vf~~m-------~~~d~~t~n~lI~~y~~-~G~~-------~~A~~lf~~M~~~--------g---- 421 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRM-------PRKNLISWNALIAGYGN-HGRG-------TKAVEMFERMIAE--------G---- 421 (697)
T ss_pred HHHHCCCHHHHHHHHHhC-------CCCCeeeHHHHHHHHHH-cCCH-------HHHHHHHHHHHHh--------C----
Confidence 8877766 5666655533 11222223333333321 1111 11111 1121110 0
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN 513 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~ 513 (733)
..+-...+-.....+.+.|++++|.++|+...+.++-. .....|..+...|.+.|++++|.+.++++ ...|+
T Consensus 422 --~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~-----p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 422 --VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK-----PRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred --CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-----CCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 01111112224566788999999999998876432211 11235778888999999999999998875 34566
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 514 IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 514 ~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
..+.-.+...+...|+.+.|.+.++.+....+.++....+.+....+.|+.+.|.+.++.+-+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 6666667777888899999999988888776655543344456667788999998888877763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-07 Score=98.66 Aligned_cols=285 Identities=13% Similarity=0.116 Sum_probs=188.5
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC--cHHHHHHHHHHHH
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG--EYESVIKCVRVLR 302 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~--~~ekAl~~l~~a~ 302 (733)
.+.+..+++.|+ ++.|+..| +++++.. .+ .....-.+|+..|+-+| +|-.|..+-+.+.
T Consensus 423 i~ka~~~lk~~d---~~~aieil----kv~~~kd--nk----------~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 423 INKAGELLKNGD---IEGAIEIL----KVFEKKD--NK----------TASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred hhHHHHHHhccC---HHHHHHHH----HHHHhcc--ch----------hhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 355668889999 88888543 3444321 11 11224456666665544 7888888888888
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCC
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~ 381 (733)
.+ .-.+|..+..++.+.+..|++|+|.+.++..+.+...-.....+++-.+...++ +.|++++-++--.++..
T Consensus 484 n~----dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn-- 557 (840)
T KOG2003|consen 484 NI----DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-- 557 (840)
T ss_pred cc----cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--
Confidence 86 356788888999999999999999999988876543222223355555655555 67777766542222211
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAE 461 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~ 461 (733)
...-+.+.+.+- -+...-..++.+. +.-.-...-..+|-+.|..|-+.|+-.+|.+
T Consensus 558 --~evl~qianiye--------------------~led~aqaie~~~--q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 558 --AEVLVQIANIYE--------------------LLEDPAQAIELLM--QANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred --HHHHHHHHHHHH--------------------HhhCHHHHHHHHH--HhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 011111111110 0000000011110 0000111223455568889999999999999
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
+|-.+-.++|.+-+ ..--++..|+...-.++|+.++++|--+.| ...-++..+.+.-+.||+++|...|+.+
T Consensus 614 ~~ydsyryfp~nie-------~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIE-------TIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhcccccCcchH-------HHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999997753 346689999999999999999999999999 6778888899999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHcCCHH
Q 004720 541 TICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 541 ~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
-.-.+.+.|.|..-+.+|-..|-.+
T Consensus 687 hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 687 HRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHhCccchHHHHHHHHHhccccchh
Confidence 9877777887776666665555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=112.24 Aligned_cols=245 Identities=15% Similarity=0.113 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..+-+++.+.|+..+=..+--+..+..|..|- ..+..|.-++.-|+ +++|.++|.+|-.+ ++..
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~-------sW~aVg~YYl~i~k---~seARry~SKat~l---D~~f 345 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL-------SWFAVGCYYLMIGK---YSEARRYFSKATTL---DPTF 345 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc-------chhhHHHHHHHhcC---cHHHHHHHHHHhhc---Cccc
Confidence 45666667888999988888888888888887553 26777877788888 89999999998887 4422
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
++ .|...|..|...++.|+|+.||..+-+..+ +.|-..+|+-++ +...+++.-|.+.+...+
T Consensus 346 ---gp-----------aWl~fghsfa~e~EhdQAmaaY~tAarl~~---G~hlP~LYlgme-y~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 346 ---GP-----------AWLAFGHSFAGEGEHDQAMAAYFTAARLMP---GCHLPSLYLGME-YMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred ---cH-----------HHHHHhHHhhhcchHHHHHHHHHHHHHhcc---CCcchHHHHHHH-HHHhccHHHHHHHHHHHH
Confidence 22 688888888888899999999888877542 233333344433 445788888888887777
Q ss_pred -hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 341 -EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 341 -~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
..|..|.-. ++.|.-.+. ..+...|.+.+... +.
T Consensus 408 ai~P~Dplv~------------~Elgvvay~----------~~~y~~A~~~f~~~-----------------l~------ 442 (611)
T KOG1173|consen 408 AIAPSDPLVL------------HELGVVAYT----------YEEYPEALKYFQKA-----------------LE------ 442 (611)
T ss_pred hcCCCcchhh------------hhhhheeeh----------HhhhHHHHHHHHHH-----------------HH------
Confidence 444333222 011111110 00001111111111 10
Q ss_pred HHHHHHHhhcchhHHHh-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 420 DERVLALFVGDAAAKER-IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~-~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
.+.+ ...+. .| +.++-|.|-.+-+.++|++|+.+|+++|...|.+. ..+..+|.||..+|+++
T Consensus 443 --~ik~------~~~e~~~w-~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~-------~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 443 --VIKS------VLNEKIFW-EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA-------STHASIGYIYHLLGNLD 506 (611)
T ss_pred --Hhhh------ccccccch-hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch-------hHHHHHHHHHHHhcChH
Confidence 0000 00011 23 33344799999999999999999999999988663 56889999999999999
Q ss_pred HHHHHHHHHHhhCC-ChHHH
Q 004720 499 RAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~ 517 (733)
+|+++|++|+.++| ++.+.
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred HHHHHHHHHHhcCCccHHHH
Confidence 99999999999999 65443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-07 Score=98.63 Aligned_cols=344 Identities=18% Similarity=0.088 Sum_probs=207.6
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+-.-|...+..|| |++|+.+|..|+.+ +|.++- .+.+...+|...++|++|++=-.....
T Consensus 5 ~k~kgnaa~s~~d---~~~ai~~~t~ai~l---~p~nhv--------------lySnrsaa~a~~~~~~~al~da~k~~~ 64 (539)
T KOG0548|consen 5 LKEKGNAAFSSGD---FETAIRLFTEAIML---SPTNHV--------------LYSNRSAAYASLGSYEKALKDATKTRR 64 (539)
T ss_pred HHHHHHhhccccc---HHHHHHHHHHHHcc---CCCccc--------------hhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567889999999 99999999999999 665431 355668899999999999976666665
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch----hhhHHHHHHH-------
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG----TAGAETAKGV------- 372 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~----~~a~~~lk~~------- 372 (733)
. ++.+|.++.-++-.+..+|+|++|+..+..-+...+...-+.-+....+..... -...++..++
T Consensus 65 l----~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 65 L----NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN 140 (539)
T ss_pred c----CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh
Confidence 5 688999999999999999999999999999887766666665555555521100 0001111110
Q ss_pred -----------HHh----------hhccCCchHHHHHHHHHH-----hhc---C-CCCCcch------------HHHH-H
Q 004720 373 -----------FLG----------LLGRCHVSAKAAVRMAHR-----VAG---D-EGDGVSE------------AAVK-L 409 (733)
Q Consensus 373 -----------l~~----------ll~~~~~~~~~a~~~l~~-----~l~---~-~~sp~~~------------~~l~-~ 409 (733)
+.. ++. +|--..+..++.. +.. . ..++..+ +... .
T Consensus 141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~--d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 141 YSLSDPAYVKILEIIQKNPTSLKLYLN--DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhhccHHHHHHHHHhhcCcHhhhcccc--cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 000 000 0000000111000 000 0 0000000 0000 0
Q ss_pred H----HHHHHHhhh---HHH-HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhH
Q 004720 410 R----AKAVAELVS---DER-VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRA 481 (733)
Q Consensus 410 k----a~~l~~l~~---~e~-v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~a 481 (733)
+ +...+.+.. .++ ....+.++...-+.....+.+-|.+..+|+.|+|.+++..+..+.+---....+....+
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 0 000000000 000 01111111111122233344445677777777777777777776543222211223567
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CChHH-------------------------HHHHHHHHHhcCCHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLE--PNIAS-------------------------AFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ld--p~~~t-------------------------~~~~~ki~l~~gd~e~Al 534 (733)
+++-.++..|.+.++++.|+.+|++++.-. |+..+ ....+.-+.+.||+..|+
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 777788889999999999999999986542 22211 224566677889999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHH
Q 004720 535 NQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTIL 599 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~ 599 (733)
..|..+.+-.+.++.+.+--+.--.+.++.+.+++..+..+++ + |.-+..-+|..+.+.
T Consensus 379 ~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~---p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 379 KHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---D---PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---C---chHHHHHHHHHHHHH
Confidence 9999988887777777766655566788999998888888884 4 666677778766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.3e-08 Score=102.89 Aligned_cols=217 Identities=11% Similarity=-0.019 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA 319 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk 319 (733)
.+.++.-+.+++.- .+.+ .+.++..+..+|.+|...|++++|+..++.+.+. ++.+|.+++..
T Consensus 42 ~e~~i~~~~~~l~~---~~~~----------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~l 104 (296)
T PRK11189 42 QEVILARLNQILAS---RDLT----------DEERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYL 104 (296)
T ss_pred HHHHHHHHHHHHcc---ccCC----------cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHH
Confidence 67788777777754 2211 1234568999999999999999999999999886 46788899999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCC
Q 004720 320 MKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDE 398 (733)
Q Consensus 320 ~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~ 398 (733)
+.++...|++++|+..+...+...|.....+.+.+.+|...++ +.|++.++ +++ +
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~----------------------~al--~ 160 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL----------------------AFY--Q 160 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHH--H
Confidence 9999999999999999999986666566666666666655544 44444444 444 4
Q ss_pred CCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhh
Q 004720 399 GDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRI 478 (733)
Q Consensus 399 ~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~ 478 (733)
..|+++. ..+|. ......+++++|++.|..+....+.+.
T Consensus 161 ~~P~~~~-----------------------------------~~~~~--~l~~~~~~~~~A~~~l~~~~~~~~~~~---- 199 (296)
T PRK11189 161 DDPNDPY-----------------------------------RALWL--YLAESKLDPKQAKENLKQRYEKLDKEQ---- 199 (296)
T ss_pred hCCCCHH-----------------------------------HHHHH--HHHHccCCHHHHHHHHHHHHhhCCccc----
Confidence 4554421 02332 223456889999999988764332221
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHH-------HhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEA-------EKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A-------~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
...+.+++.+|+++.+ +.+..+ .+++| ...+++++.+++.+.|++++|+.+|+......+
T Consensus 200 ------~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 200 ------WGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ------cHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1135666667776544 233333 35566 567899999999999999999999999988753
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=111.28 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
|.++|+.+.+.++|++|++.|+.|+.+.|.| +-.|.|+|.+|.+||+|+.|+++|+.|+++|| +..++-.+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3459999999999999999999999998855 56899999999999999999999999999999 677777899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.+|.-.|++++|++.|++...+.+.++
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 999999999999999999988876555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-08 Score=98.66 Aligned_cols=190 Identities=18% Similarity=0.102 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
..-+..+++.|..++..|+ +++|+..|++++.. .|.+. ....++..+|.+|...|++++|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~---~p~~~-----------~~~~a~~~la~~~~~~~~~~~A~~~ 92 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGD---YTEAIKYFEALESR---YPFSP-----------YAEQAQLDLAYAYYKSGDYAEAIAA 92 (235)
T ss_pred cCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCch-----------hHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455679999999999999 99999999999887 44221 1234678899999999999999999
Q ss_pred HHHHHccCCCCCCCCCc---HHHHHHHHHHhc--------CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhH
Q 004720 298 VRVLREGSFDGGDHHAS---LPVLAMKAWLGL--------GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~---~~~lk~~il~~~--------g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~ 366 (733)
++.+.... +.+|. ++++.+.++... |++++|+..+...+...|
T Consensus 93 ~~~~l~~~----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---------------------- 146 (235)
T TIGR03302 93 ADRFIRLH----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP---------------------- 146 (235)
T ss_pred HHHHHHHC----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC----------------------
Confidence 99988753 44554 567777777765 455566666555543221
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA-VAELVSDERVLALFVGDAAAKERIAMHAVLWN 445 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~-l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~ 445 (733)
++.... ++.. +..... ......+.
T Consensus 147 -----------------------------------~~~~~~--~a~~~~~~~~~------------------~~~~~~~~ 171 (235)
T TIGR03302 147 -----------------------------------NSEYAP--DAKKRMDYLRN------------------RLAGKELY 171 (235)
T ss_pred -----------------------------------CChhHH--HHHHHHHHHHH------------------HHHHHHHH
Confidence 111100 0000 000000 00001234
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
.|..+++.|+|++|+.+|+.++..+|.+ +..++.+.+++.+|.++|++++|.++++....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDT----PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888999999999999999999988865 36688999999999999999999998876544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-07 Score=98.59 Aligned_cols=198 Identities=14% Similarity=0.092 Sum_probs=131.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
|..-+......++|++|+.+.++.... ++.+..++.+|++++...|++.+|+-.++......|-....|-.++..|
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 444455556667899999999988875 5667788999999999999999999999988766666777788888878
Q ss_pred HHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHH-HHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 358 FQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMA-HRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 358 ~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l-~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
.-.+. ..|....+.++.. .+....+..++ ..+. --+|.. ..|++.+.+. . +. .+
T Consensus 379 LA~~~~kEA~~~An~~~~~-----~~~sA~~LtL~g~~V~--~~dp~~----rEKAKkf~ek-----~---L~-----~~ 434 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRL-----FQNSARSLTLFGTLVL--FPDPRM----REKAKKFAEK-----S---LK-----IN 434 (564)
T ss_pred HhhchHHHHHHHHHHHHHH-----hhcchhhhhhhcceee--ccCchh----HHHHHHHHHh-----h---hc-----cC
Confidence 76555 4444444433221 11111122222 1111 011111 2343333220 0 00 00
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
-.-+. ..-..+..+.-.|.|.+++...+..|..+|.. .+++.+|..+...+++.+|.++|..|+++||
T Consensus 435 P~Y~~-AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 435 PIYTP-AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred CccHH-HHHHHHHHHHhhCccchHHHHHHHHHhhcccc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 00000 01126777889999999999999999988855 3789999999999999999999999999999
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-08 Score=102.17 Aligned_cols=270 Identities=9% Similarity=0.019 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch-hHHHHHHHHH--HHhHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE-HYKSLANQYL--TFAKSALSKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~-~~~~La~~~~--~~G~~~~~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
+|.++.+. .+|.+.|-.......++....|. .+.-.-+=+| ++|++++..|- +.+|.+.|+++++-.+
T Consensus 184 LFey~fyh------enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm---~r~AekqlqssL~q~~ 254 (478)
T KOG1129|consen 184 LFEYLFYH------ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGM---PRRAEKQLQSSLTQFP 254 (478)
T ss_pred HHHHHHHh------hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcC---hhhhHHHHHHHhhcCC
Confidence 55655433 45556665555544444332111 1111122344 78999999999 9999999999998622
Q ss_pred cCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHH
Q 004720 256 KGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 256 ~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~ 335 (733)
- + .++..|+.+|-..++.+.|+..+..-...+ +.+.-...-..+|+...+++++|.+.
T Consensus 255 ~--------~----------dTfllLskvY~ridQP~~AL~~~~~gld~f----P~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 255 H--------P----------DTFLLLSKVYQRIDQPERALLVIGEGLDSF----PFDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred c--------h----------hHHHHHHHHHHHhccHHHHHHHHhhhhhcC----CchhhhhhhhHHHHHHHHhHHHHHHH
Confidence 1 1 178889999999999999999988776532 22222224456888899999999999
Q ss_pred HHHhhhccC-CchHH-HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 004720 336 LRGMVEIKG-IPECI-WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA 413 (733)
Q Consensus 336 l~~~l~~~~-~~~~~-~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~ 413 (733)
++..+.-.+ +.+.+ |+.. .-|+.++.+.|+.++++++. .....|
T Consensus 313 Yk~vlk~~~~nvEaiAcia~-~yfY~~~PE~AlryYRRiLq------------------------mG~~sp--------- 358 (478)
T KOG1129|consen 313 YKLVLKLHPINVEAIACIAV-GYFYDNNPEMALRYYRRILQ------------------------MGAQSP--------- 358 (478)
T ss_pred HHHHHhcCCccceeeeeeee-ccccCCChHHHHHHHHHHHH------------------------hcCCCh---------
Confidence 988884443 44444 2222 22333333555666653321 110011
Q ss_pred HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh
Q 004720 414 VAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG 493 (733)
Q Consensus 414 l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~ 493 (733)
-++-|.|..++-.++|+-++--|+.++..-.++. ..+.+.+|++.+...
T Consensus 359 ---------------------------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~----~aaDvWYNlg~vaV~ 407 (478)
T KOG1129|consen 359 ---------------------------ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG----QAADVWYNLGFVAVT 407 (478)
T ss_pred ---------------------------HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc----hhhhhhhccceeEEe
Confidence 1333688889999999999999999987655332 457899999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 494 LSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 494 l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.|++.-|...+.-|+..|| +-...-++.-+..++|+.++|...+...++..
T Consensus 408 iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 408 IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999 78888889999999999999999998887764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-05 Score=86.88 Aligned_cols=377 Identities=16% Similarity=0.058 Sum_probs=240.7
Q ss_pred hccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHH----
Q 004720 143 HDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYK---- 218 (733)
Q Consensus 143 ~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~---- 218 (733)
..+-+.+.|...+++|++.++. . +++.+ ++.+..-|..|...+.++.+..|..+..-.
T Consensus 387 VelE~~~darilL~rAveccp~--------s------~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQ--------S------MDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred HhccChHHHHHHHHHHHHhccc--------h------HHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 4556777799999999998862 0 22221 112444566777788888887776653211
Q ss_pred --------HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc-------chhhhhhhhcHHHHHHHHHH
Q 004720 219 --------SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEART-------REETTELKGLKFKTLRFISA 283 (733)
Q Consensus 219 --------~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~-------~~~~~~~~el~~~~l~~La~ 283 (733)
.+..-....|...+..... --.=-.||++|.+.-..+ ...+ --|...-++-+.++|..-+.
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv--~i~rdqWl~eAe~~e~ag--sv~TcQAIi~avigigvEeed~~~tw~~da~ 524 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGV--EINRDQWLKEAEACEDAG--SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQ 524 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcce--eecHHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhccccchhHhHHhhhHH
Confidence 1111222334444444331 122345777777652221 0000 00011112334567777777
Q ss_pred HHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh-cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch
Q 004720 284 IHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG-LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 284 ~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~-~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
.....+.++=|...|..+++.+ +..-+. -+++.-+.+ .|.-++-...+++.+...+..+.+|+-.++.+...+.
T Consensus 525 ~~~k~~~~~carAVya~alqvf----p~k~sl-Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVF----PCKKSL-WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhc----cchhHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence 7777777777777777777743 122222 333333333 3677777777788887778888888887777765544
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch--hHHHhhHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA--AAKERIAMH 440 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~--~~~~~~~~~ 440 (733)
. .++..++...+ +..|...+.|+-..++.-+....++..++|..-. .+.+.-|
T Consensus 600 v---------------------~~ar~il~~af--~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~-- 654 (913)
T KOG0495|consen 600 V---------------------PAARVILDQAF--EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVW-- 654 (913)
T ss_pred c---------------------HHHHHHHHHHH--HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhh--
Confidence 1 22233333333 4455444555444444344344455544444000 0112222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHH
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFL 519 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~ 519 (733)
.+.++..--.++.++|+.+++.+|..+| +.-|++-.+|..|-..++.+.|.+.|...++..| .+..-.+
T Consensus 655 ---mKs~~~er~ld~~eeA~rllEe~lk~fp-------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 655 ---MKSANLERYLDNVEEALRLLEEALKSFP-------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred ---HHHhHHHHHhhhHHHHHHHHHHHHHhCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 2344445567899999999999999887 5569999999999999999999999999999999 7888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+.++--+.|..-+|...+++..--++.++.|-..+++.-++.|+.+.|...+.+-|+....+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999998887777778887788999999999999998888877755444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-06 Score=99.40 Aligned_cols=313 Identities=16% Similarity=0.080 Sum_probs=181.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh-hccCCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV-EIKGIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l-~~~~~~~~~~ls~~~ 355 (733)
++...+.++.+.|++++|++.++...+.. ....+..-.++++++++|++++|...++.+| +||++. ..|-.+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I----~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~-~Yy~~L~~ 80 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI----LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY-DYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHH
Confidence 44556888999999999999998766632 2445667999999999999999999999999 555443 33333333
Q ss_pred HHHHhch--hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 356 AYFQAAG--TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 356 ly~~~~~--~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
+..-... +...+.+..++..+..+. |......++.=.|+ .++.+..++.. -+.. .+.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~-------~g~~F~~~~~~--------yl~~-----~l~ 139 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFL-------EGDEFKERLDE--------YLRP-----QLR 139 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccC-------CHHHHHHHHHH--------HHHH-----HHh
Confidence 3211100 112223333322222222 11111111111111 11111011000 0111 011
Q ss_pred HHhhHHHHHHHHHHHHHHh-cCCHH---HHHHHHHHhhcc----CCCC---chhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 434 KERIAMHAVLWNCASILFR-SKDYE---ASAEMFEKSMLY----LPFD---VENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k-~~~y~---~A~~~y~~aL~~----~~~~---~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
+.+++ ++..-...|+ ..+.. .-+.-|..++.- .+.+ .+.+...--+++.+|.+|..+|++++|.+
T Consensus 140 KgvPs----lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 140 KGVPS----LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred cCCch----HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 10110 0011111111 11111 111222223321 1111 11112233467999999999999999999
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 503 YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 503 ~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
++++|+...| .+..++..++|+.+.|++++|.++++....+...+.-+-+-|+-...++|..+.|++-+..... ...+
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr-~~~~ 294 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR-EDVD 294 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC-CCCC
Confidence 9999999999 8999999999999999999999999999998777777889999999999999999877766654 2212
Q ss_pred CCCchhHHHHHHHHHHHH-----HhhcCChhHHHHHHHHHHHHhhhc
Q 004720 582 KPMPTKEVVVLRTIVTIL-----TQETGNESEVLKYMKRAHARTSEI 623 (733)
Q Consensus 582 ~~~~~~~~~~lR~li~l~-----~~~~~~~~~~l~~~~~A~~~l~~~ 623 (733)
|..-+.=+-|.--++ ..+.|+....|+.|........+.
T Consensus 295 ---~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 295 ---PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred ---cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 332223223332222 133467777788877777766665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-08 Score=98.94 Aligned_cols=191 Identities=14% Similarity=0.052 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
-..+...+..|..++..|+++.|...|++++...|.- +. .-+.+...+.++...|+++.|+..++++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------~~-----~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------PY-----AEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hh-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456778899999999999999999999998765420 00 013455668888999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhc--------CCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh---hhhhhcHHHH
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSK--------NETNSLNDALKLMNEALELCEKGLGEARTREET---TELKGLKFKT 277 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~--------~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~---~~~~el~~~~ 277 (733)
..|..+.. ...++.+|.+++.. ++ +++|+..|+++++. .|.+....... ..........
T Consensus 99 ~~p~~~~~----~~a~~~~g~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 99 LHPNHPDA----DYAYYLRGLSNYNQIDRVDRDQTA---AREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred HCcCCCch----HHHHHHHHHHHHHhcccccCCHHH---HHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHH
Confidence 99986642 33577778887765 67 99999999999988 54432211000 0001111123
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
...+|..|+..|++++|+..++.+....++ .+..+..++..+.++.+.|++++|+..+..+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788999999999999999988875310 122345779999999999999999998776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-07 Score=95.01 Aligned_cols=250 Identities=18% Similarity=0.133 Sum_probs=155.3
Q ss_pred hHHHHHHHHHHHhhhHHhc-----cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHD-----LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAI 200 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~-----~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~ 200 (733)
...++.++..++.+.+|++ ..+++.|...|++|.. .+...|++++|.
T Consensus 4 ~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~----------------------------~fk~~~~~~~A~ 55 (282)
T PF14938_consen 4 EELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAAN----------------------------CFKLAKDWEKAA 55 (282)
T ss_dssp HHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHH----------------------------HHHHTT-CHHHH
T ss_pred HHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHH----------------------------HHHHHhccchhH
Confidence 3556667777776544331 2367777777766654 445678899999
Q ss_pred HHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHH
Q 004720 201 TLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRF 280 (733)
Q Consensus 201 ~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~ 280 (733)
++|.+|.++..... .....+..|.+.|..+.+. + +++|+.+|++|.++..+.- . ...-++++..
T Consensus 56 ~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~---~~~Ai~~~~~A~~~y~~~G-~----------~~~aA~~~~~ 119 (282)
T PF14938_consen 56 EAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-D---PDEAIECYEKAIEIYREAG-R----------FSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHCT------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-C---HHHHHHHHHHHHHHHHhcC-c----------HHHHHHHHHH
Confidence 99999988765422 2234566677777776544 7 8999999999999866531 1 1233568889
Q ss_pred HHHHHhcc-CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHH
Q 004720 281 ISAIHLQK-GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQ 359 (733)
Q Consensus 281 La~~yl~~-~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~ 359 (733)
+|.+|-.. +++++|+++|+.+.... ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y----------------------------------------------------~~ 147 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELY----------------------------------------------------EQ 147 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHH----------------------------------------------------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------------------------------HH
Confidence 99999888 89999998888775421 00
Q ss_pred hchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHH
Q 004720 360 AAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAM 439 (733)
Q Consensus 360 ~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~ 439 (733)
. +.+ . . .
T Consensus 148 e--------------------------------------~~~-~-----~-----------------------------a 154 (282)
T PF14938_consen 148 E--------------------------------------GSP-H-----S-----------------------------A 154 (282)
T ss_dssp T--------------------------------------T-H-H-----H-----------------------------H
T ss_pred C--------------------------------------CCh-h-----h-----------------------------H
Confidence 0 000 0 0 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHH
Q 004720 440 HAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 440 ~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
...+.+.|..+.+.|+|++|++.|+......-.+...+...-+.+.+.+.||+..|++..|.+.+++....+| -..+.-
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 0011135677788999999999999977543322111123445678889999999999999999999999998 333322
Q ss_pred HH-----HHHHH--hcCCHHHHHHHHHHHHhcc
Q 004720 519 LK-----FKIYL--QKNDQEGAINQILAMTICL 544 (733)
Q Consensus 519 ~~-----~ki~l--~~gd~e~Al~~l~~~~~~~ 544 (733)
.. ...+- -...++.|+..|..+..+.
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 21 22221 1344678888887776663
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8e-08 Score=91.79 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.++.|..+++.|+|++|++.|..++...|.+ ...+.++|.++..+|++++|++.|.++++++| ++...+.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4467999999999999999999999987754 46789999999999999999999999999999 999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
.++...|++++|+.++.......+.+++.....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999888777755443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-05 Score=85.42 Aligned_cols=312 Identities=14% Similarity=0.036 Sum_probs=186.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
..|..+...|+...|..-+.++....+...... ...+..|..+...|+ +++|..+++++++. .|.+.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~---~~~A~~~~~~~l~~---~P~~~--- 77 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGD---LPKALALLEQLLDD---YPRDL--- 77 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCC---HHHHHHHHHHHHHH---CCCcH---
Confidence 445666678889998888888887776544322 234556888888999 99999999999887 44221
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHH
Q 004720 265 EETTELKGLKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.++.. +..+.. .+..+.+...+... .+.+|. .....+.++...|++++|+..++
T Consensus 78 -----------~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 78 -----------LALKL-HLGAFGLGDFSGMRDHVARVLPLW-------APENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred -----------HHHHH-hHHHHHhcccccCchhHHHHHhcc-------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12222 333332 33444455444432 233444 33566678888899999888877
Q ss_pred HhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 338 GMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 338 ~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
..+.. .|++..
T Consensus 139 ~al~~---------------------------------------------------------~p~~~~------------ 149 (355)
T cd05804 139 RALEL---------------------------------------------------------NPDDAW------------ 149 (355)
T ss_pred HHHhh---------------------------------------------------------CCCCcH------------
Confidence 55431 121110
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCH
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLI 497 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~ 497 (733)
.....|.++++.|++++|+.+|..++...|.+. ......+..++.+|+..|++
T Consensus 150 ------------------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~---~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 150 ------------------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS---MLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred ------------------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc---chhHHHHHHHHHHHHHCCCH
Confidence 111368889999999999999999998877532 23345678899999999999
Q ss_pred HHHHHHHHHHHhhCC--C-hHHH---HHHHHHHHhcCCHHHHHHH--HHHHH-hccCC--ChHHHHHHHHHHHHcCCHHH
Q 004720 498 DRAQEYITEAEKLEP--N-IASA---FLKFKIYLQKNDQEGAINQ--ILAMT-ICLDF--TTDFLSLAAHEAVACQALSV 566 (733)
Q Consensus 498 ~~A~e~~~~A~~ldp--~-~~t~---~~~~ki~l~~gd~e~Al~~--l~~~~-~~~~~--~~~lL~la~~~a~~~~~~~~ 566 (733)
++|...++++....| . .... ......+...|..+.+.+. +.... ...+. .+-.-...+......|+.+.
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 999999999976655 2 2211 1333444445543222221 11111 11011 11111123444556778888
Q ss_pred HHHHHHHHHhhhcCCCCCch-hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcc
Q 004720 567 AVAALSNLLNFYTSGKPMPT-KEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIG 624 (733)
Q Consensus 567 a~~aL~~Ll~~~~~~~~~~~-~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~ 624 (733)
+...|+.+............ .....++-+--+.....|+.++.+..+..|.......|
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 88888887763322000011 01111111111123446888999999999998887775
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.2e-08 Score=93.92 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
...|+.+|+.|+|++|..-|..||...|.-.. ..++-+|.|+|.|.++++..+.|++.|.+|++++| +......++.
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 34899999999999999999999999986643 47889999999999999999999999999999999 8888888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
+|-+...+++|++.|+++..+.+.
T Consensus 177 ayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcc
Confidence 999999999999999999988654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-05 Score=86.93 Aligned_cols=307 Identities=11% Similarity=-0.000 Sum_probs=182.4
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
.|..+...|++..|...+.++....+.-. ++ ......++..++..|+++.|...++++.+..|..+..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a- 79 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARA-----TE------RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA- 79 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCC-----CH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH-
Confidence 45666667888888777777776543110 11 1234457888899999999999999999998876522
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
+.. |..++..++ +..+.....++++.. .+.+. .....+..++.++...|++++|+..
T Consensus 80 ------~~~-~~~~~~~~~---~~~~~~~~~~~l~~~--~~~~~-----------~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 80 ------LKL-HLGAFGLGD---FSGMRDHVARVLPLW--APENP-----------DYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred ------HHH-hHHHHHhcc---cccCchhHHHHHhcc--CcCCC-----------CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 221 333333333 222333333333321 11111 1223566789999999999999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
++.+.+. .+.++......+.+++..|++++|+..+...+...+
T Consensus 137 ~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~--------------------------------- 179 (355)
T cd05804 137 ARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD--------------------------------- 179 (355)
T ss_pred HHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC---------------------------------
Confidence 9999886 456788888999999999999999998775543110
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
.++ + ......|..|..+...|+++
T Consensus 180 ---------------------~~~-~----------------------------------~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 180 ---------------------CSS-M----------------------------------LRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred ---------------------CCc-c----------------------------------hhHHHHHHHHHHHHHCCCHH
Confidence 000 0 00113567899999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHH-HH-HHHHHHHhCCCHHHHHH---HHHHHHhh-C-C-ChHHHHHHHHHHHhcCC
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKS-FR-VLCLCYLGLSLIDRAQE---YITEAEKL-E-P-NIASAFLKFKIYLQKND 529 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl-~r-~la~cyl~l~~~~~A~e---~~~~A~~l-d-p-~~~t~~~~~ki~l~~gd 529 (733)
+|+.+|+.++...|... ..... -+ .+...+...|..+.+.. ........ + + ..+.......+++..|+
T Consensus 204 ~A~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 204 AALAIYDTHIAPSAESD----PALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred HHHHHHHHHhccccCCC----hHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 99999999875444211 11111 11 22222333332222222 12221111 1 2 23444467888889999
Q ss_pred HHHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 530 QEGAINQILAMTICLDF---------TTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~---------~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.++|...++.+...... ...+..+-+..+...|+.+.|+..|...+.
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999888765432 111222233333445555555544444443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-07 Score=103.62 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=66.4
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
..++.|+.-+|.-.++-|+.-+|... ++.--+|..+...++ -..|+..|++++++ +|.+.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~ha-------eAW~~LG~~qaENE~---E~~ai~AL~rcl~L---dP~Nl------- 353 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHA-------EAWQKLGITQAENEN---EQNAISALRRCLEL---DPTNL------- 353 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHH-------HHHHHhhhHhhhccc---hHHHHHHHHHHHhc---CCccH-------
Confidence 45678888888888888887777533 356678888888877 68888888999888 66443
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
.++..||..|...|.-..|+++++.=.
T Consensus 354 -------eaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 354 -------EALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 278888888888887778888876543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=101.00 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCC----Cchh----hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPF----DVEN----RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~----~~~~----~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
..|+.+|+.|+|..|..-|++++.+... +.+. -..+-.++.|++.||+++++|.+|++.|++++.++| |+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 4899999999999999999999875541 1111 123445789999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
..|.+.++++..|+++.|+..++++.+..+++-+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999999999999999877643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-07 Score=95.77 Aligned_cols=127 Identities=14% Similarity=0.122 Sum_probs=88.9
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
-|.-.++.|++..-..+|++|++.= -++...+-.+|+.-..+|...+||.+|+.+-.--+-+.....+ .
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG----------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-k 91 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG----------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-K 91 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc----------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-h
Confidence 4777788999999999999998741 1222234467777788888999999999875544443322111 1
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
.--|...-|+|..+--+|. |++|+.+..+-+++..+- ++ +-...+.+++|+++|...|
T Consensus 92 lGEAKssgNLGNtlKv~G~---fdeA~~cc~rhLd~areL-gD----------rv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGA---FDEALTCCFRHLDFAREL-GD----------RVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hccccccccccchhhhhcc---cchHHHHHHHHhHHHHHH-hH----------HHhhhHHHhhhhhhhhhcc
Confidence 1123457789999989999 999999999999985431 11 2234559999999998876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=102.81 Aligned_cols=108 Identities=17% Similarity=0.079 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
+.....++.-+.-|+...+.++|+.|+.+|++|+++.|. + --|||+||+++.+.|.++.|++++.+
T Consensus 75 ~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--------n------AVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 75 EEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--------N------AVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------c------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 357788899999999999999999999999999999863 1 14889999999999999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
|+.++|...+ .|-.+|..++..|+ |++|+..|++|+++ +|.+
T Consensus 141 Al~iDp~ysk-------ay~RLG~A~~~~gk---~~~A~~aykKaLel---dP~N 182 (304)
T KOG0553|consen 141 ALSIDPHYSK-------AYGRLGLAYLALGK---YEEAIEAYKKALEL---DPDN 182 (304)
T ss_pred HHhcChHHHH-------HHHHHHHHHHccCc---HHHHHHHHHhhhcc---CCCc
Confidence 9999997554 47788888889999 99999999999999 6644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-07 Score=97.61 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=152.3
Q ss_pred hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH--HHHHc--
Q 004720 228 AKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV--RVLRE-- 303 (733)
Q Consensus 228 G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l--~~a~~-- 303 (733)
|.-+.+.|+ +..-+.+|+.|++....+ . + ....++..|+++|.-.++|++|+++- ++...
T Consensus 24 GERLck~gd---craGv~ff~aA~qvGTeD---l---------~-tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~ 87 (639)
T KOG1130|consen 24 GERLCKMGD---CRAGVDFFKAALQVGTED---L---------S-TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL 87 (639)
T ss_pred HHHHHhccc---hhhhHHHHHHHHHhcchH---H---------H-HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH
Confidence 667889999 999999999999983222 1 1 23348889999999999999999873 33322
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh-ccCCchH-----HHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE-IKGIPEC-----IWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~-~~~~~~~-----~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
+...++.-.. .-..+.++...|+||+|+-...+-+. ......- .+.++++.|-..+...+.+.-...
T Consensus 88 lgdklGEAKs--sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~----- 160 (639)
T KOG1130|consen 88 LGDKLGEAKS--SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK----- 160 (639)
T ss_pred hcchhccccc--cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc-----
Confidence 2111122222 24456677779999999988654331 0000000 122333333222221111111000
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
+.+. ......++..+. .++....+ .+...+ +.+.-..+=|.|+.||-.|+|+
T Consensus 161 g~f~---~ev~~al~~Av~---------fy~eNL~l------~~~lgD----------r~aqGRa~GnLGNTyYlLGdf~ 212 (639)
T KOG1130|consen 161 GAFN---AEVTSALENAVK---------FYMENLEL------SEKLGD----------RLAQGRAYGNLGNTYYLLGDFD 212 (639)
T ss_pred cccc---HHHHHHHHHHHH---------HHHHHHHH------HHHhhh----------HHhhcchhcccCceeeeeccHH
Confidence 0011 011111111100 00011000 011111 1111112335899999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CC--ChHHHHHHHHHHHhcCCH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EP--NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp--~~~t~~~~~ki~l~~gd~ 530 (733)
.|+.+-+.=|++-..- +++...-..+.|++.||+-+|+++-|+++|++++.+ +. +.-..|.+...|....++
T Consensus 213 ~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence 9999999877654211 113344567899999999999999999999987655 22 455668889999999999
Q ss_pred HHHHHHHHHHHh
Q 004720 531 EGAINQILAMTI 542 (733)
Q Consensus 531 e~Al~~l~~~~~ 542 (733)
++||.+..+=..
T Consensus 292 ~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 292 QKAITYHQRHLA 303 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999988765433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.6e-06 Score=91.82 Aligned_cols=342 Identities=13% Similarity=0.085 Sum_probs=213.3
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHH--------HHhhccCCC-hHHHHHHH-----------HHHHHHHHHHHHccCH
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVS--------KLDISRISD-SDERKLLL-----------DINIARSRTAWEVLEQ 196 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~--------~~~~~~~~~-~~e~~~~l-----------~~l~~rA~~a~~~g~~ 196 (733)
..+..|.+-+-++=|..+|-.|+...+ ..++..+++ -++...+| .+.+.-|...|..||.
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCc
Confidence 344567778888888899988886544 122223222 12222111 2555668899999999
Q ss_pred HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHH
Q 004720 197 NLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFK 276 (733)
Q Consensus 197 ~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~ 276 (733)
-.|...+.+|.+..|.+.+ .-++. -+..+.... ++.|..+|.+|... .+.. +
T Consensus 601 ~~ar~il~~af~~~pnsee--iwlaa-----vKle~en~e---~eraR~llakar~~---sgTe---------------R 652 (913)
T KOG0495|consen 601 PAARVILDQAFEANPNSEE--IWLAA-----VKLEFENDE---LERARDLLAKARSI---SGTE---------------R 652 (913)
T ss_pred HHHHHHHHHHHHhCCCcHH--HHHHH-----HHHhhcccc---HHHHHHHHHHHhcc---CCcc---------------h
Confidence 9999999999998887443 12222 233345555 99999999999886 3211 2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
+|.--+..--.+|+.++|+.+++.+.+.+ +.++..+.+++.|+.+.++.+.|...+..-++..|....+|+++.++
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~f----p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSF----PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhC----CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 55544555556688999999999999874 57788889999999999999999999988887778888889888886
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh--hHHHHHHHhhcchhHH
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV--SDERVLALFVGDAAAK 434 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~--~~e~v~~~~~g~~~~~ 434 (733)
=...+. +.- |..++++-. ...|++...|..... .++. ..+.+..... ..+.
T Consensus 729 eEk~~~---~~r------------------AR~ildrar--lkNPk~~~lwle~Ir--~ElR~gn~~~a~~lma-kALQ- 781 (913)
T KOG0495|consen 729 EEKDGQ---LVR------------------ARSILDRAR--LKNPKNALLWLESIR--MELRAGNKEQAELLMA-KALQ- 781 (913)
T ss_pred HHHhcc---hhh------------------HHHHHHHHH--hcCCCcchhHHHHHH--HHHHcCCHHHHHHHHH-HHHH-
Confidence 544432 122 222333333 234444333321111 1111 0111111000 0000
Q ss_pred HhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 435 ERIAMHAVLWNCASILFRSK-DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~-~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.=+-..+||-.+--.+..+ +-..+++..+++-+ | ..++...+.-+-.-.++++|.+-|.+|.+.||
T Consensus 782 -ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~----d-------phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 782 -ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH----D-------PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred -hCCccchhHHHHHHhccCcccchHHHHHHHhccC----C-------chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 0112347777666665443 33344444444321 2 23556666777778889999999999999998
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
+-.+--..|+.+++-|..+.-.+.+.....+.+..-+
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 5555556677778888888888888888777654333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-07 Score=100.53 Aligned_cols=233 Identities=11% Similarity=0.084 Sum_probs=149.3
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
|..|..+++.|+ ..+|+-.|+.|..- +|. .+.+|..||.++.+.++=..|+.++..+.+.
T Consensus 289 f~eG~~lm~nG~---L~~A~LafEAAVkq---dP~--------------haeAW~~LG~~qaENE~E~~ai~AL~rcl~L 348 (579)
T KOG1125|consen 289 FKEGCNLMKNGD---LSEAALAFEAAVKQ---DPQ--------------HAEAWQKLGITQAENENEQNAISALRRCLEL 348 (579)
T ss_pred HHHHHHHHhcCC---chHHHHHHHHHHhh---ChH--------------HHHHHHHhhhHhhhccchHHHHHHHHHHHhc
Confidence 446778888888 88888888887765 442 2448888888888888777788888888774
Q ss_pred CCCCCCCCCcHH--HHHH-HHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCC
Q 004720 305 SFDGGDHHASLP--VLAM-KAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 305 ~~~~~~~~p~~~--~lk~-~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~ 381 (733)
+|.-. .+.+ -.|.-.|--.+|+..+..=|.+.+..... . ....
T Consensus 349 -------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l--------------------~-------~a~~ 394 (579)
T KOG1125|consen 349 -------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHL--------------------V-------SAGE 394 (579)
T ss_pred -------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhc--------------------c-------ccCc
Confidence 44432 2222 22223344556777766655432211100 0 0000
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh--cchhHH-HhhHHHHHHHHHHHHHHhcCCHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV--GDAAAK-ERIAMHAVLWNCASILFRSKDYEA 458 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~--g~~~~~-~~~~~~~llW~~g~~~~k~~~y~~ 458 (733)
+. ++-. .+++.+..-+ . .|.+.|- +++.+. .-.-++.. .|-.++-.|+|+.
T Consensus 395 ~~---------~~~~-~~s~~~~~~l-~------------~i~~~fLeaa~~~~~~~DpdvQ~~---LGVLy~ls~efdr 448 (579)
T KOG1125|consen 395 NE---------DFEN-TKSFLDSSHL-A------------HIQELFLEAARQLPTKIDPDVQSG---LGVLYNLSGEFDR 448 (579)
T ss_pred cc---------cccC-CcCCCCHHHH-H------------HHHHHHHHHHHhCCCCCChhHHhh---hHHHHhcchHHHH
Confidence 00 0000 0011111111 0 0111111 111110 11122223 5888999999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 459 SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 459 A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
|++.|+.||...|.| ..+..+||....+-.+..+|+++|++|+++.| .+..+|.+.-.++..|.|++|++++
T Consensus 449 aiDcf~~AL~v~Pnd-------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND-------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHhcCCch-------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999987755 46889999999999999999999999999999 8999999999999999999999988
Q ss_pred HHHHhcc
Q 004720 538 LAMTICL 544 (733)
Q Consensus 538 ~~~~~~~ 544 (733)
-+.....
T Consensus 522 L~AL~mq 528 (579)
T KOG1125|consen 522 LEALSMQ 528 (579)
T ss_pred HHHHHhh
Confidence 6665443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.9e-06 Score=84.90 Aligned_cols=265 Identities=15% Similarity=0.102 Sum_probs=166.4
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
.++-..+.++|+..+-...+.+|.+.+ .-..+|+-+-.+|. .+.|++.=+.-++ .|.-.
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~d~~t~e-------~~ltLGnLfRsRGE---vDRAIRiHQ~L~~----spdlT------- 102 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQEDPETFE-------AHLTLGNLFRSRGE---VDRAIRIHQTLLE----SPDLT------- 102 (389)
T ss_pred HHHhhcCcchHHHHHHHHHhcCchhhH-------HHHHHHHHHHhcch---HHHHHHHHHHHhc----CCCCc-------
Confidence 344567788899988888887776433 35567777788888 7888764443322 22111
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchH
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPEC 348 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~ 348 (733)
-+-|..++..||.-|+..|-+|+|...+..+..+ +..-+.+.-..+.||....+..+||...++.....+.+-.
T Consensus 103 --~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 103 --FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred --hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 1235558888999999999999999988888764 2333444445555555556666666655544322111111
Q ss_pred HHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004720 349 IWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV 428 (733)
Q Consensus 349 ~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~ 428 (733)
+ .++-+|
T Consensus 177 ~--eIAqfy----------------------------------------------------------------------- 183 (389)
T COG2956 177 V--EIAQFY----------------------------------------------------------------------- 183 (389)
T ss_pred h--HHHHHH-----------------------------------------------------------------------
Confidence 0 111111
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004720 429 GDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE 508 (733)
Q Consensus 429 g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~ 508 (733)
=..+..+.-..+.+.|.+|+.+|+.-.|... ..-.-++..++..|+|.+|++.++.++
T Consensus 184 ---------------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-------RAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 184 ---------------CELAQQALASSDVDRARELLKKALQADKKCV-------RASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred ---------------HHHHHHHhhhhhHHHHHHHHHHHHhhCccce-------ehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 0133344455677888888888888777542 233557788888889999999888888
Q ss_pred hhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 509 KLEP-N-IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 509 ~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+.|| . +...-.++..|-+.|+.++.+.-+........ .++...+-++......-...|..-+...+.
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-GADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-CccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 8888 3 34455678888888888888888877776544 344333333444444455666666665555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=101.91 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
++..|..+|..|+|++|++.|+.++...|.+ +.++.++|.||+.+|++++|+.++++|++++| ++..++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 5568999999999999999999999988754 46789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.++...|++++|+.+++....+.+.++++...
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999998877775444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-05 Score=87.58 Aligned_cols=328 Identities=14% Similarity=0.097 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.++++++.+....|++++|+..+.+....-.+... ++-..|..+++.|+ +++|...|..-++. +|.+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~-------~~E~rA~ll~kLg~---~~eA~~~y~~Li~r---NPdn 71 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLA-------VLEKRAELLLKLGR---KEEAEKIYRELIDR---NPDN 71 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHH---CCCc
Confidence 57888999999999999999999887765554332 23345666778888 99999999988887 7655
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH-hcC-ChHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHL-----QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL-GLG-RYNEAE 333 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl-----~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~-~~g-~~deAi 333 (733)
.. .++.|..+.. .-++.++-..+|+.+.. ..|.+..-+--.+. ..| ++.+..
T Consensus 72 ~~--------------Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~-------~yp~s~~~~rl~L~~~~g~~F~~~~ 130 (517)
T PF12569_consen 72 YD--------------YYRGLEEALGLQLQLSDEDVEKLLELYDELAE-------KYPRSDAPRRLPLDFLEGDEFKERL 130 (517)
T ss_pred HH--------------HHHHHHHHHhhhcccccccHHHHHHHHHHHHH-------hCccccchhHhhcccCCHHHHHHHH
Confidence 43 3344444441 11245666777877765 23443322211122 122 355544
Q ss_pred HHH-HHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 004720 334 LEL-RGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAK 412 (733)
Q Consensus 334 ~~l-~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~ 412 (733)
..+ ...+ ..++|.-| .++-.+|..... ...+..++ ..++. ....
T Consensus 131 ~~yl~~~l-~KgvPslF-~~lk~Ly~d~~K---~~~i~~l~------------------~~~~~-~l~~----------- 175 (517)
T PF12569_consen 131 DEYLRPQL-RKGVPSLF-SNLKPLYKDPEK---AAIIESLV------------------EEYVN-SLES----------- 175 (517)
T ss_pred HHHHHHHH-hcCCchHH-HHHHHHHcChhH---HHHHHHHH------------------HHHHH-hhcc-----------
Confidence 444 3343 23333222 333444431111 11111111 11110 0000
Q ss_pred HHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH---HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 413 AVAELVSDERVLALFVGDAAAKERIAMHAVLWN---CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 413 ~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~---~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
...+.+.. ..+...-.+++|- .+..+-..|+|++|+++++.|+...|.. ..+|...|.
T Consensus 176 -----------~~~~~~~~-~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-------~ely~~Kar 236 (517)
T PF12569_consen 176 -----------NGSFSNGD-DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-------VELYMTKAR 236 (517)
T ss_pred -----------cCCCCCcc-ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHH
Confidence 00000000 0001111223342 4666678999999999999999987744 468999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh--H--------HHHHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT--D--------FLSLAAHEA 558 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~--~--------lL~la~~~a 558 (733)
+|-..|++.+|.+.+++|..+|+ +=...---.|..++.|+.++|.+.+..+.+-.. +| + ++.-++.-.
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 655566678888899999999999988877653 33 2 334445555
Q ss_pred HHcCCHHHHHHHHHHHHhh---hcCCCCCchhHHHHHHHHHHH
Q 004720 559 VACQALSVAVAALSNLLNF---YTSGKPMPTKEVVVLRTIVTI 598 (733)
Q Consensus 559 ~~~~~~~~a~~aL~~Ll~~---~~~~~~~~~~~~~~lR~li~l 598 (733)
.+.|+...|.+-+..+... +..| +..=|.-++=|.++|-
T Consensus 316 ~r~~~~~~ALk~~~~v~k~f~~~~~D-QfDFH~Yc~RK~t~r~ 357 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKHFDDFEED-QFDFHSYCLRKMTLRA 357 (517)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHhhccHHH
Confidence 5678888887666555543 3333 2222444443444444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-06 Score=84.73 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.-++|-+.++|+.||+.-+.-..+.+.... ...|..|.-++.-+....++++|.+.+.+|++-|| ++.....+.+|+
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~--~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYR--VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccch--hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 457788999999999999987777776553 68999999999999999999999999999999999 999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
+.+|+++.|++.++.+... +|+++..
T Consensus 225 ~~~g~y~~AV~~~e~v~eQ---n~~yl~e 250 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQ---NPEYLSE 250 (389)
T ss_pred HhccchHHHHHHHHHHHHh---ChHHHHH
Confidence 9999999999999999988 5554444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00028 Score=79.02 Aligned_cols=341 Identities=13% Similarity=0.062 Sum_probs=184.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
....-+...|+|++|..-..|.+...|+.+.. .+..-+++...++ |++|. .++++........
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a-------~~cKvValIq~~k---y~~AL-------k~ikk~~~~~~~~ 79 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDA-------IRCKVVALIQLDK---YEDAL-------KLIKKNGALLVIN 79 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhh-------HhhhHhhhhhhhH---HHHHH-------HHHHhcchhhhcc
Confidence 33445568899999999999999998876543 4545556666777 77776 3333332211100
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK- 343 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~- 343 (733)
. -...-|-|.++.+..|+|+++++-+ +..++....+++.+++++|+|++|...++.++.+.
T Consensus 80 ~-----------~~fEKAYc~Yrlnk~Dealk~~~~~-------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 80 S-----------FFFEKAYCEYRLNKLDEALKTLKGL-------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred h-----------hhHHHHHHHHHcccHHHHHHHHhcc-------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 0 1123366778899999999999944 34567788999999999999999999999988544
Q ss_pred CCc-hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 344 GIP-ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 344 ~~~-~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
+.. +..-.++...- .... .+..+. .-.....+.+...+..-..+. .+.-+.-..+..++..+
T Consensus 142 dd~d~~~r~nl~a~~---a~l~-~~~~q~----v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~-------- 204 (652)
T KOG2376|consen 142 DDQDEERRANLLAVA---AALQ-VQLLQS----VPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRI-------- 204 (652)
T ss_pred chHHHHHHHHHHHHH---Hhhh-HHHHHh----ccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH--------
Confidence 222 22221111100 0000 001110 001112223333333333321 11110100011121111
Q ss_pred HHHHhh-cchhHH-HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh------------------------
Q 004720 423 VLALFV-GDAAAK-ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN------------------------ 476 (733)
Q Consensus 423 v~~~~~-g~~~~~-~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~------------------------ 476 (733)
-.+.+. +..... -..-+..+--..+.++..+|+-.+|...|...+...|.|+..
T Consensus 205 ~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 205 CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 011111 111101 122333444457888889999999999999887665544311
Q ss_pred ------------------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 477 ------------------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 477 ------------------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
+.-...+++|.++--+-.+.-+.+.+.+..-=..-| ..+...+..-...+...+-+|++.+
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L 364 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELL 364 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 111233455555555555555555555532211123 2333333333333334466666666
Q ss_pred HHHHhccCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 538 LAMTICLDFT-TDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 538 ~~~~~~~~~~-~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.......+.+ -.++.+-+|..+..|+.++|+..|..+++.
T Consensus 365 ~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 365 LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 5554443332 346666789999999999999999865543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.9e-06 Score=88.78 Aligned_cols=216 Identities=9% Similarity=-0.020 Sum_probs=149.7
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET 267 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~ 267 (733)
++....++++.|+..+++++.+.|.... +++..|..+...+.. +++++.++.+++.. ++.+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~yt-------aW~~R~~iL~~L~~~--l~eeL~~~~~~i~~---npkn------- 105 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYT-------VWHFRRLCLEALDAD--LEEELDFAEDVAED---NPKN------- 105 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHH-------HHHHHHHHHHHcchh--HHHHHHHHHHHHHH---CCcc-------
Confidence 3455778999999999999999998654 466777777777731 89999999999988 5422
Q ss_pred hhhhhcHHHHHHHHHHHHhccCc--HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 268 TELKGLKFKTLRFISAIHLQKGE--YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 268 ~~~~el~~~~l~~La~~yl~~~~--~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
..+|...+.++...+. +++++.+++.+... ++.+..++.-++-++...|++++|+..+.++|...+
T Consensus 106 -------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~- 173 (320)
T PLN02789 106 -------YQIWHHRRWLAEKLGPDAANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV- 173 (320)
T ss_pred -------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-
Confidence 1267777777766664 47788999888775 355666778899999999999999888877764222
Q ss_pred chHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHH
Q 004720 346 PECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLA 425 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~ 425 (733)
.+.++|..|..++..+
T Consensus 174 --------------------------------------------------------~N~sAW~~R~~vl~~~-------- 189 (320)
T PLN02789 174 --------------------------------------------------------RNNSAWNQRYFVITRS-------- 189 (320)
T ss_pred --------------------------------------------------------CchhHHHHHHHHHHhc--------
Confidence 1222222221111110
Q ss_pred HhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHH
Q 004720 426 LFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQ 501 (733)
Q Consensus 426 ~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~ 501 (733)
+..-......+++++++..++.+.|.|.. ..+.++.++.. ++...+|.
T Consensus 190 ---------------------~~l~~~~~~~e~el~y~~~aI~~~P~N~S-------aW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 190 ---------------------PLLGGLEAMRDSELKYTIDAILANPRNES-------PWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred ---------------------cccccccccHHHHHHHHHHHHHhCCCCcC-------HHHHHHHHHhcCCcccccchhHH
Confidence 00000001235678888899999887753 46667777766 56778899
Q ss_pred HHHHHHHhhCC-ChHHHHHHHHHHHh
Q 004720 502 EYITEAEKLEP-NIASAFLKFKIYLQ 526 (733)
Q Consensus 502 e~~~~A~~ldp-~~~t~~~~~ki~l~ 526 (733)
+.|.++.+.+| +++..-.++.++..
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 99999999888 88888888888874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00018 Score=82.64 Aligned_cols=368 Identities=11% Similarity=0.031 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhh--hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLL--FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~--~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
..+..-+-+++..|..-.|+..++++.... |..+......+.+|+ -.-+. +++++.+-+++++.+....
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~------e~l~~---~eegldYA~kai~~~~~~~ 428 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI------ERLKL---VEEGLDYAQKAISLLGGQR 428 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH------hchhh---hhhHHHHHHHHHHHhhhhh
Confidence 344455778889999999999999999887 544544444444444 23344 8999999999999753321
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKG-----------EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG 327 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~-----------~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g 327 (733)
..+..+++..+|-+|-..- ...+++..++.+.+. .+.+|.+.|-..--+.-.+
T Consensus 429 ------------~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~----d~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 429 ------------SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF----DPTDPLVIFYLALQYAEQR 492 (799)
T ss_pred ------------hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHH
Confidence 3355668889999985431 356788889999886 5678888777776777778
Q ss_pred ChHHHHHHHHHhhhc-cCCchHHHHhHHHHHHHhch-hhhHHHHHHHHH-------hhhccCCch-----HHHHHHHHHH
Q 004720 328 RYNEAELELRGMVEI-KGIPECIWVSAVEAYFQAAG-TAGAETAKGVFL-------GLLGRCHVS-----AKAAVRMAHR 393 (733)
Q Consensus 328 ~~deAi~~l~~~l~~-~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~-------~ll~~~~~~-----~~~a~~~l~~ 393 (733)
+.++|..+++..+.- .......|--.+-++-..++ ..|...++.++. ...++-+-+ ..+++.++.+
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 999999999888843 43333333323322222222 333333332222 111221111 2233333322
Q ss_pred hhc-CCCCCcchHHH-HHHHHHH------------HHhhhHHHHHHHhh------cch--hHH-------H-hhHHHHHH
Q 004720 394 VAG-DEGDGVSEAAV-KLRAKAV------------AELVSDERVLALFV------GDA--AAK-------E-RIAMHAVL 443 (733)
Q Consensus 394 ~l~-~~~sp~~~~~l-~~ka~~l------------~~l~~~e~v~~~~~------g~~--~~~-------~-~~~~~~ll 443 (733)
.+. -+.-+.....+ .++...+ ........+..... |.+ +++ . ..-..-.+
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 220 00000000000 0000000 00000000100000 100 010 0 11122456
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 444 WNCASIL-FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 444 W~~g~~~-~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
|-.+... .+.++-++|.-....+-.++| .-+..++.+|.++...|++.+|++.|..|+.+|| ++...-.++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~-------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDP-------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcch-------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 7755555 455556666667777776665 4467899999999999999999999999999999 898888999
Q ss_pred HHHHhcCCHHHHHH--HHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 522 KIYLQKNDQEGAIN--QILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 522 ki~l~~gd~e~Al~--~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
+++++.|+.-.|.. .+..+.+..+.+|+.-.--.....+.|+...|..-+..-++.-.+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 99999999888887 888888888888885555568889999999999888888884333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-07 Score=86.44 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
++..|..+++.|+|++|...|+....++|.+ +.-+.+||.|+..+|+|.+|++.|.+|..++| +|.+.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 3458999999999999999999999887754 46789999999999999999999999999999 999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.+++..|+.+.|.++++......+..|.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 9999999999999999988766655555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0003 Score=86.92 Aligned_cols=380 Identities=15% Similarity=0.065 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh-hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCL-LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l-~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
+++...+...+..|++..+..++..+-.- ....|. +....+..++..++ +++|..++.++.+.......
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~-------l~~~~a~~~~~~g~---~~~a~~~l~~a~~~~~~~~~ 444 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR-------LVLLQAWLAQSQHR---YSEVNTLLARAEQELKDRNI 444 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc-------hHHHHHHHHHHCCC---HHHHHHHHHHHHHhccccCc
Confidence 45555566777889888877776554111 111222 23344556677888 99999999999887443210
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC----cHHHHHHHHHHhcCChHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA----SLPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p----~~~~lk~~il~~~g~~deAi~~ 335 (733)
.. + ...+..+...++.++...|++++|..+++.+.... ....+ ......+.++...|++++|...
T Consensus 445 ~~---~-----~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 445 EL---D-----GTLQAEFNALRAQVAINDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred cc---c-----hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00 0 12244455567888999999999999998877632 11122 1225556677888999999999
Q ss_pred HHHhhhccC---CchHH---HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHH
Q 004720 336 LRGMVEIKG---IPECI---WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKL 409 (733)
Q Consensus 336 l~~~l~~~~---~~~~~---~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ 409 (733)
+...+.... .+... ....+..+...++ . ..+...+.+.+
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~-----------------~----~~A~~~~~~al-------------- 558 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQGF-----------------L----QAAYETQEKAF-------------- 558 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC-----------------H----HHHHHHHHHHH--------------
Confidence 876653111 11000 0011111111111 0 11111111110
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
. ....... ........+.+..|..++..|++++|.+.+..++........ ......+..++.
T Consensus 559 ---~------------~~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~ 620 (903)
T PRK04841 559 ---Q------------LIEEQHL-EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP--QQQLQCLAMLAK 620 (903)
T ss_pred ---H------------HHHHhcc-ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc--hHHHHHHHHHHH
Confidence 0 0000000 000011123445799999999999999999999876542211 234567788999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC--ChHH------HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH----HHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP--NIAS------AFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF----LSLAAHE 557 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp--~~~t------~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l----L~la~~~ 557 (733)
++...|+++.|.+.+.++..+.+ .... .......+...|+.+.|.+.+..........+.+ +...+..
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 99999999999999999977633 1111 1123355566899999998876655422222211 2333455
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH--HHhhcCChhHHHHHHHHHHHHhhhcccCccCCCcccc
Q 004720 558 AVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTI--LTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAG 635 (733)
Q Consensus 558 a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l--~~~~~~~~~~~l~~~~~A~~~l~~~~~~~~~~~~~~~ 635 (733)
....|+.+.|+..|+..+...... ..+. ...|.++.+ .....|+.++...++.+|.+.....|... .-
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~-g~~~---~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~r------~f 770 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSL-RLMS---DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFIS------HF 770 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHh-CchH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchhh------hH
Confidence 566888999988888888743222 1111 222222222 24456888899999999998776554321 23
Q ss_pred chhhHHHHh
Q 004720 636 RREQNWLAV 644 (733)
Q Consensus 636 ~~E~~Wf~~ 644 (733)
.++.+|+..
T Consensus 771 ~~~g~~l~~ 779 (903)
T PRK04841 771 VIEGEAMAQ 779 (903)
T ss_pred HhccHHHHH
Confidence 456666633
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-07 Score=84.07 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.++..|..+++.|+|++|+++|+.++...|.+ ...+.+++.||...|++++|.++++++++.+| ++...+.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 35568999999999999999999999887644 46789999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
..++...|++++|++.++......+.++.+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 999999999999999999999887655553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-06 Score=89.52 Aligned_cols=274 Identities=14% Similarity=0.030 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
+.+...++++ .++...| ...|-...+..+++--..+..... .+ ..--|+ ..++.||+..|.+.+|.+.
T Consensus 178 p~l~kaLFey--~fyhenD---v~~aH~~~~~~~~~~~a~~s~~~~--~~---~dwwWk--~Q~gkCylrLgm~r~Aekq 245 (478)
T KOG1129|consen 178 PTLVKALFEY--LFYHEND---VQKAHSLCQAVLEVERAKPSGSTG--CT---LDWWWK--QQMGKCYLRLGMPRRAEKQ 245 (478)
T ss_pred hHHHHHHHHH--HHHhhhh---HHHHHHHHHHHHHHHhcccccccc--ch---HhHHHH--HHHHHHHHHhcChhhhHHH
Confidence 3455555543 2344455 556655555555552222211111 10 111222 3579999999999999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGL 376 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~l 376 (733)
++-.++. ..+|....+..++|.+...+..|+..+...+...|-...+.+..+..+...+. +.+.+.++.+
T Consensus 246 lqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v---- 316 (478)
T KOG1129|consen 246 LQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV---- 316 (478)
T ss_pred HHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH----
Confidence 9888884 46899999999999999999999999988776555444444455565555444 5556666533
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
+ +..|.+-+++ . --|..||=.++-
T Consensus 317 ------------------l--k~~~~nvEai-----------------------------A-------cia~~yfY~~~P 340 (478)
T KOG1129|consen 317 ------------------L--KLHPINVEAI-----------------------------A-------CIAVGYFYDNNP 340 (478)
T ss_pred ------------------H--hcCCccceee-----------------------------e-------eeeeccccCCCh
Confidence 2 2333221000 0 036668889999
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--C--ChHHHHHHHHHHHhcCCHHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE--P--NIASAFLKFKIYLQKNDQEG 532 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld--p--~~~t~~~~~ki~l~~gd~e~ 532 (733)
+-|+.+|+..|..-..+ ..+|.|+++|.+--+++|-+...+.+|+... | -....|++..|++--||+..
T Consensus 341 E~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL 413 (478)
T ss_pred HHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence 99999999988764333 3689999999999999999999999998763 4 34667889999999999999
Q ss_pred HHHHHHHHHhccCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 533 AINQILAMTICLDFTTD-FLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 533 Al~~l~~~~~~~~~~~~-lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
|-+|+.-.....+.+.+ +-.++ ..+.+.|+.+.|...|+.--+
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLa-vL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLA-VLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHH-HHHhhcCchHHHHHHHHHhhh
Confidence 99999888777655554 44554 566678999888766654443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.6e-06 Score=87.60 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
.+.-..+..+.++|+.|-..|+++.|..+|.+|.+...... ...+ .-..+ ..|+.....++++.|+.++++
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-----~~~~---Aa~~~-~~Aa~~~k~~~~~~Ai~~~~~ 99 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG-----DKFE---AAKAY-EEAANCYKKGDPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------HHH---HHHHH-HHHHHHHHHTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-----CHHH---HHHHH-HHHHHHHHhhCHHHHHHHHHH
Confidence 36666789999999999999999999999999998765411 0100 11222 235555566799999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhc-CCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSK-NETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI 284 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~-~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~ 284 (733)
|.++...... ....+..+.++|..+-.. ++ +++|+.+|++|.++.+... . ......++..+|.+
T Consensus 100 A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d---~e~Ai~~Y~~A~~~y~~e~-~----------~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGR-FSQAAKCLKELAEIYEEQLGD---YEKAIEYYQKAAELYEQEG-S----------PHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT--HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCC-C----------hhhHHHHHHHHHHH
Confidence 9998765332 245788899999999998 89 9999999999999987643 1 11234588899999
Q ss_pred HhccCcHHHHHHHHHHHHccCCCCCCCCCc--HHHH-HHHHHHhcCChHHHHHHHHHhhh
Q 004720 285 HLQKGEYESVIKCVRVLREGSFDGGDHHAS--LPVL-AMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 285 yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~--~~~l-k~~il~~~g~~deAi~~l~~~l~ 341 (733)
+...++|++|+..++.+.....+.+-..++ .+++ .+-|++..|++..|...+.....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998776532100001111 2244 44577788999988888877653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00014 Score=78.11 Aligned_cols=138 Identities=15% Similarity=0.114 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
.-++.+.++...|-.=+..|+|..|.+...++.+--+. + .--+..-|+++-..||++.|=.++.++
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~----p----------~l~~l~aA~AA~qrgd~~~an~yL~ea 144 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ----P----------VLAYLLAAEAAQQRGDEDRANRYLAEA 144 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc----h----------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44677888999999999999999999999987764321 1 112233477888999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
.++.++..- .++.......+.++| ++.|..-+.+..+. .|.+. .+++....+|+
T Consensus 145 ae~~~~~~l------~v~ltrarlll~~~d---~~aA~~~v~~ll~~---~pr~~--------------~vlrLa~r~y~ 198 (400)
T COG3071 145 AELAGDDTL------AVELTRARLLLNRRD---YPAARENVDQLLEM---TPRHP--------------EVLRLALRAYI 198 (400)
T ss_pred hccCCCchH------HHHHHHHHHHHhCCC---chhHHHHHHHHHHh---CcCCh--------------HHHHHHHHHHH
Confidence 988443211 145667777889999 99999888888777 54332 28888899999
Q ss_pred ccCcHHHHHHHHHHHHcc
Q 004720 287 QKGEYESVIKCVRVLREG 304 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~ 304 (733)
..|+|......+..+.+.
T Consensus 199 ~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 199 RLGAWQALLAILPKLRKA 216 (400)
T ss_pred HhccHHHHHHHHHHHHHc
Confidence 999999999999888873
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-07 Score=85.26 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
++.++...|+++.|+.++.++..+.|..+. .++++|..+...|+ +++|+.+|++++.+ +|.+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-------a~~~lg~~~~~~g~---~~~A~~~y~~Al~l---~p~~~---- 92 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWR-------AHIALAGTWMMLKE---YTTAINFYGHALML---DASHP---- 92 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHHHhh---HHHHHHHHHHHHhc---CCCCc----
Confidence 456666777777777777777777776543 36666777777777 77777777777776 44332
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHH
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKA 322 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~i 322 (733)
..+..+|.++...|++++|+.+++.+... .+.+|..+.++..+
T Consensus 93 ----------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~----~p~~~~~~~~~~~~ 135 (144)
T PRK15359 93 ----------EPVYQTGVCLKMMGEPGLAREAFQTAIKM----SYADASWSEIRQNA 135 (144)
T ss_pred ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHH
Confidence 15667777777777777777777777664 34555555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00017 Score=89.05 Aligned_cols=178 Identities=15% Similarity=0.050 Sum_probs=115.0
Q ss_pred HhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHH
Q 004720 142 WHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLA 221 (733)
Q Consensus 142 ~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La 221 (733)
.+..|+++.|...++.|.+..+.. +...+..........++.+++..|+++.|...++++....+.... ....
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~ 491 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDR-----NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRI 491 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhcccc-----CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHH
Confidence 345556666666665554443210 000011111233445677888999999999999999986443221 1233
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+..+|..+...|+ +++|..+++++++..... ++ ......++..++.++...|+++.|..+++.+
T Consensus 492 ~a~~~lg~~~~~~G~---~~~A~~~~~~al~~~~~~-g~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 492 VATSVLGEVHHCKGE---LARALAMMQQTEQMARQH-DV----------YHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhh-cc----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 446678999999999 999999999999985532 11 1122346788899999999999999888776
Q ss_pred HccCC-CCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 302 REGSF-DGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 302 ~~~~~-~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
..... .+....|. .....+.++...|++++|...+...+
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 66321 00111222 22456778888899999999887655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-07 Score=75.75 Aligned_cols=61 Identities=36% Similarity=0.519 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP 512 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp 512 (733)
+.|..++..|+|++|+..|+.++.+.|. .+.++.++|.||.++| ++++|+++++++++++|
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~-------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDPN-------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4899999999999999999999999764 4568999999999999 79999999999999998
|
... |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00031 Score=79.40 Aligned_cols=349 Identities=17% Similarity=0.139 Sum_probs=203.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
..++|+.|++||..|....+. ....+-|+ |-.-...|+++....-=.+-.++.|+.- .-
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d----------N~qilrDl----slLQ~QmRd~~~~~~tr~~LLql~~~~r-------a~ 145 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD----------NLQILRDL----SLLQIQMRDYEGYLETRNQLLQLRPSQR-------AS 145 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC----------cHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHhhhhhH-------HH
Confidence 456888999999998875331 00010111 2222346777776666666666666422 12
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+.-+++++.-.|+ |..|...++.....+...+.... . +.+. .+..-.....+.|.+++|++-+..-+.
T Consensus 146 w~~~Avs~~L~g~---y~~A~~il~ef~~t~~~~~s~~~----~---e~se--~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 146 WIGFAVAQHLLGE---YKMALEILEEFEKTQNTSPSKED----Y---EHSE--LLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCHHH----H---HHHH--HHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 4466778888888 99999888877776543221111 0 1112 333347778888889999877655544
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccC---
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRC--- 380 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~--- 380 (733)
.. -..-.....++.++.+.+++++|...++.++...|+....|......+.. .....+.++.++..+-...
T Consensus 214 ~i----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk--~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 214 QI----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK--IKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HH----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhcCccc
Confidence 11 11122336788899999999999999999985555555556666665530 1112333333322211110
Q ss_pred ------------Cch-HHHHHHHHHHhhcCCCCCcchH---HH---HHHHHHHHHhhhHHHHHHHhh---cc--hh--HH
Q 004720 381 ------------HVS-AKAAVRMAHRVAGDEGDGVSEA---AV---KLRAKAVAELVSDERVLALFV---GD--AA--AK 434 (733)
Q Consensus 381 ------------~~~-~~~a~~~l~~~l~~~~sp~~~~---~l---~~ka~~l~~l~~~e~v~~~~~---g~--~~--~~ 434 (733)
+.. ...--.++...+. +|-|---. .+ -+|..+++++. ..... |. -. .+
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~-Kg~p~vf~dl~SLyk~p~k~~~le~Lv-----t~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLS-KGVPSVFKDLRSLYKDPEKVAFLEKLV-----TSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhh-cCCCchhhhhHHHHhchhHhHHHHHHH-----HHHHhhcccccCCCcccc
Confidence 000 1111223333332 33331111 01 11222222222 11111 11 00 00
Q ss_pred -HhhHHHHHHHH---HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 435 -ERIAMHAVLWN---CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 435 -~~~~~~~llW~---~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
....-.+++|- .+..+...|+|+.|.+|...|+...|. .-.+|..-|..+...|+++.|...+.+|-++
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-------liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-------LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 11233456666 566778999999999999999987664 3456778888899999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
|- +....---++-.++.++.++|.+....+.+-.
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 86 55444344566668889999998888877654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-05 Score=81.01 Aligned_cols=223 Identities=19% Similarity=0.224 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCC-------CchhhhhhHHHHHHHHHHHHhCCCHHH---HHHHHH
Q 004720 437 IAMHAVLWNCASILFRSK-DYEASAEMFEKSMLYLPF-------DVENRILRAKSFRVLCLCYLGLSLIDR---AQEYIT 505 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~-~y~~A~~~y~~aL~~~~~-------~~~~~~~~akl~r~la~cyl~l~~~~~---A~e~~~ 505 (733)
..+..+++|.|...++.+ +|++|+.|.+.|.++.+. ..+....+.+++|.++.+|+..+.++. |.++++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345568889999999999 999999999999987421 111124788999999999999988664 444444
Q ss_pred HHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---ChHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhhcC
Q 004720 506 EAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF---TTDFLSLAAHEAVACQALSVAVAAL-SNLLNFYTS 580 (733)
Q Consensus 506 ~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~---~~~lL~la~~~a~~~~~~~~a~~aL-~~Ll~~~~~ 580 (733)
.+..--| .+...++.+++..+.++.+.+-+.+..|....+. +-++..-++....+.. .+.+.+.| +.|++....
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCC
Confidence 4544456 4666778899999999999999999999988763 2233333344444433 34444555 555554433
Q ss_pred CCCCchhHHHHHHHHHHHH-HhhcCCh--hHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHHhhhhhhhhhccccc
Q 004720 581 GKPMPTKEVVVLRTIVTIL-TQETGNE--SEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEK 657 (733)
Q Consensus 581 ~~~~~~~~~~~lR~li~l~-~~~~~~~--~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~ 657 (733)
. +.+.+.. +-+.|++ .+..++. .+.++-+...+..+.+. ..++.+.+...|+.-.=||.|-++.+.+
T Consensus 191 ~---~~~~~e~-~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~------~~~~ls~~~~~a~~~LLW~~~~~~~~~k 260 (278)
T PF08631_consen 191 S---EDQWLEK-LVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS------LGKQLSAEAASAIHTLLWNKGKKHYKAK 260 (278)
T ss_pred C---hhHHHHH-HHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 2211111 1111222 2332221 22244333333333332 1235677899999999999999999999
Q ss_pred chhhHHHHHHHHH
Q 004720 658 KYELCMEFLRLAS 670 (733)
Q Consensus 658 ~~~~~~~f~~la~ 670 (733)
+|+.+.+|+.+|.
T Consensus 261 ~y~~A~~w~~~al 273 (278)
T PF08631_consen 261 NYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
|
It is also involved in sporulation []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.6e-06 Score=88.77 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
.++.-...|.+...+|+++.|.....+.+.+++.+. ..+|--|.+++..++ .+.++..|++++.+ +|
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-------~al~vrg~~~yy~~~---~~ka~~hf~qal~l---dp 234 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-------EALYVRGLCLYYNDN---ADKAINHFQQALRL---DP 234 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-------HHHHhcccccccccc---hHHHHHHHhhhhcc---Ch
Confidence 356666778899999999999999999999988654 358888999999999 99999999999999 66
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+.++..-.. ..-+..+++.-|+-.++.|+|.+|-++|..++++ +|+
T Consensus 235 dh~~sk~~~~--~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-------dP~------------------------ 281 (486)
T KOG0550|consen 235 DHQKSKSASM--MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-------DPS------------------------ 281 (486)
T ss_pred hhhhHHhHhh--hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-------Ccc------------------------
Confidence 4443211111 1123346666677777777777777777777663 333
Q ss_pred hhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 339 MVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 339 ~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+.
T Consensus 282 ----------------------------------------------------------------n~-------------- 283 (486)
T KOG0550|consen 282 ----------------------------------------------------------------NK-------------- 283 (486)
T ss_pred ----------------------------------------------------------------cc--------------
Confidence 00
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
....-++||.+.+....|+-.+|+.-++.++.+++ ..-|.+..+|.||+-+++|+
T Consensus 284 ------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-------syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 284 ------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-------SYIKALLRRANCHLALEKWE 338 (486)
T ss_pred ------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 00112677888888899999999999999999865 55688999999999999999
Q ss_pred HHHHHHHHHHhhCC--ChHHHHHHHHHHHh
Q 004720 499 RAQEYITEAEKLEP--NIASAFLKFKIYLQ 526 (733)
Q Consensus 499 ~A~e~~~~A~~ldp--~~~t~~~~~ki~l~ 526 (733)
.|.+++++|.+.+. ++.-.+..+...++
T Consensus 339 ~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 99999999988866 56655555655554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-07 Score=79.09 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=70.9
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
.+|+|+.|+.+|++.+...|.++ ....+.++|.||.+.|+|++|.+++++ .+.+| ++..+++.++++...|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~-----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP-----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH-----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H
T ss_pred CCccHHHHHHHHHHHHHHCCCCh-----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH
Confidence 36899999999999999888541 345778899999999999999999999 77888 788999999999999999
Q ss_pred HHHHHHHHH
Q 004720 531 EGAINQILA 539 (733)
Q Consensus 531 e~Al~~l~~ 539 (733)
++|++.+++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999876
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00012 Score=74.53 Aligned_cols=205 Identities=19% Similarity=0.211 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA 319 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk 319 (733)
.++-++...+.+.....+ .+ .+-.+.++....-+.+..+..+-|..|++.++..+ +..+.+.-++
T Consensus 28 seevv~l~~~~~~~~k~~----~~-------g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lk 92 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSG----AL-------GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLK 92 (289)
T ss_pred HHHHHHHHHHHHHHhhhc----cc-------CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHH
Confidence 466666666555543322 11 11256677777888888999999999999998753 3445555777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCC
Q 004720 320 MKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEG 399 (733)
Q Consensus 320 ~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~ 399 (733)
+-.+...|.+++|++++..++...|+...++.+=+-+....+. ..++++. -...++.|+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--~l~aIk~---------------ln~YL~~F~---- 151 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK--NLEAIKE---------------LNEYLDKFM---- 151 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--cHHHHHH---------------HHHHHHHhc----
Confidence 7777788999999999999986554333333211111110100 0111110 011222332
Q ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhh
Q 004720 400 DGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRIL 479 (733)
Q Consensus 400 sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~ 479 (733)
.|.++ -|..+.+|+..|+|..|+-.|+..+-+.|-++
T Consensus 152 --~D~EA------------------------------------W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~----- 188 (289)
T KOG3060|consen 152 --NDQEA------------------------------------WHELAEIYLSEGDFEKAAFCLEELLLIQPFNP----- 188 (289)
T ss_pred --CcHHH------------------------------------HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-----
Confidence 12222 24478999999999999999999999888664
Q ss_pred hHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 480 RAKSFRVLCLCYLGL---SLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 480 ~akl~r~la~cyl~l---~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
-++.+++-.+.-. .++.-|.++|.+|++++| +....|-.+...-
T Consensus 189 --l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 189 --LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 3555666544444 467889999999999999 7777776665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.3e-05 Score=87.62 Aligned_cols=346 Identities=13% Similarity=0.034 Sum_probs=206.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
+..+...|.+||.||-++.+..+... + .-|..+.+..+.+.|...+-++-+.+|... ....
T Consensus 504 d~~Dm~RA~kCf~KAFeLDatdaeaa-----------a---a~adtyae~~~we~a~~I~l~~~qka~a~~-----~k~n 564 (1238)
T KOG1127|consen 504 DSDDMKRAKKCFDKAFELDATDAEAA-----------A---ASADTYAEESTWEEAFEICLRAAQKAPAFA-----CKEN 564 (1238)
T ss_pred HHHHHHHHHHHHHHHhcCCchhhhhH-----------H---HHHHHhhccccHHHHHHHHHHHhhhchHHH-----HHhh
Confidence 33334467777777777654311100 0 115567778888888887666666555422 1122
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
....|.-+++.++ +..|+.||+.|+.+ +|.+ ...|..|+.+|...|.|.-|++.++++..
T Consensus 565 W~~rG~yyLea~n---~h~aV~~fQsALR~---dPkD--------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHN---LHGAVCEFQSALRT---DPKD--------------YNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhccccccCccc---hhhHHHHHHHHhcC---Cchh--------------HHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3347888999999 99999999999998 5522 23899999999999999999999999876
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH-------HHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI-------WVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~-------~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
. .+.+-.+.|...-+..-.|+|.+|...+.+++........+ +++....+.-.+- ..+.+++++.+..
T Consensus 625 L----rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 625 L----RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred c----CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4 23444444666667777799999999988776322222222 2232322222211 2344444433221
Q ss_pred -----hhccCCch-HH--------------------HHHHHHHH-hhcCCCCCcchH-HH----HHHHHH-HHHhhh-HH
Q 004720 376 -----LLGRCHVS-AK--------------------AAVRMAHR-VAGDEGDGVSEA-AV----KLRAKA-VAELVS-DE 421 (733)
Q Consensus 376 -----ll~~~~~~-~~--------------------~a~~~l~~-~l~~~~sp~~~~-~l----~~ka~~-l~~l~~-~e 421 (733)
.+..+.+. .+ -.+.++.. +......+++.- .+ ...... ...+.. +.
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 11112221 00 01111111 211011121110 00 000000 000000 00
Q ss_pred HH---HH-Hhh----cchh---------HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHH
Q 004720 422 RV---LA-LFV----GDAA---------AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSF 484 (733)
Q Consensus 422 ~v---~~-~~~----g~~~---------~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~ 484 (733)
.+ .+ .+. ++.. .-...+-.-.+||.--+.-..|+|.-|-..|-++....|... -.+
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~-------~~W 853 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCH-------CQW 853 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccch-------hhe
Confidence 00 01 000 1111 001233345789966666666999999999999988777543 347
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
.|++..+++..+++.|.+.+.++..+|| +...-.-++.|....|+.-+++..+..
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999 888888899999999998888887766
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.5e-06 Score=82.14 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=107.1
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH-HHhcCC-
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI-YLQKND- 529 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki-~l~~gd- 529 (733)
.++.++++..++.++...|.+ +..+..+|.+|...|++++|.+.|++|++++| ++...+..+.+ +...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence 678899999999999988755 35789999999999999999999999999999 88888888886 467777
Q ss_pred -HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 530 -QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 530 -~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+++|.+.+....+..+.+++.+.+.+..+.+.|+.+.|+..++.+++....+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5999999999999998899988888899999999999999999999966555
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-06 Score=85.25 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH-HHhCCC--HHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC-YLGLSL--IDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c-yl~l~~--~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.|..+...|+|++|++.|+.++.+.|.+ ..++.++|.+ |...|+ +++|.+.++++++++| ++...++++
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGEN-------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 7889999999999999999999998755 4578999998 477787 5999999999999999 999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.++.+.|++++|+.+++++....+.+.
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999998875433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-06 Score=75.96 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASA 517 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~ 517 (733)
.+++.|..+++.|+|++|++.|..++...|.+ +.....+..++.+|.+.|++++|.++++++...+| + +...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 35678999999999999999999999887754 24467889999999999999999999999999988 4 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
+.+..++...|+.++|++.+..+....+.++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 7889999999999999999999988866544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8e-07 Score=92.79 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
.+|+.||++|+|++||++|..++..+|.|. -++.|+|.+|++++.|..|.++|+.|+.+|. ++..+-.+...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np-------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP-------VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc-------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 489999999999999999999999998664 3678999999999999999999999999999 77777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
-...|+.++|-+.++.+..+.+.+.+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 88899999999999999999776544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.2e-05 Score=80.50 Aligned_cols=208 Identities=11% Similarity=-0.023 Sum_probs=133.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC-ChHHHHHHHHHhhhccCCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG-RYNEAELELRGMVEIKGIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ 355 (733)
++-.+-.++...+.+++|+..++.+.++ ++.+..++..+..++..+| ++++++..+..++...+..-.+|-.-..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 4444455566677899999999999987 4677788899999999998 5799999998888544444334321111
Q ss_pred HHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 356 AYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 356 ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
++ ..+++. ....++..+++++ +.+|.+-.+|.
T Consensus 115 ~l-----------------~~l~~~--~~~~el~~~~kal--~~dpkNy~AW~--------------------------- 146 (320)
T PLN02789 115 LA-----------------EKLGPD--AANKELEFTRKIL--SLDAKNYHAWS--------------------------- 146 (320)
T ss_pred HH-----------------HHcCch--hhHHHHHHHHHHH--HhCcccHHHHH---------------------------
Confidence 11 111110 0122333444444 34443322221
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC---CC----HHHHHHHHHHHH
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL---SL----IDRAQEYITEAE 508 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l---~~----~~~A~e~~~~A~ 508 (733)
+.|......|+|++|+++|..+++..|.|. .++..++.+..++ |. .+++++++.+++
T Consensus 147 ---------~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 147 ---------HRQWVLRTLGGWEDELEYCHQLLEEDVRNN-------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred ---------HHHHHHHHhhhHHHHHHHHHHHHHHCCCch-------hHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 267777778899999999999999988664 3455566655554 33 357899999999
Q ss_pred hhCC-ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 509 KLEP-NIASAFLKFKIYLQ----KNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 509 ~ldp-~~~t~~~~~ki~l~----~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
.++| +....+++..++.. .++..+|++....+......++-.|.
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 9999 77777776666665 34556677776665554333443333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-05 Score=86.85 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=109.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|.-.+..++|++|.+.++.+++++|--. ..+++++.|+++++++..|.++|+.+..++| +...--+....|
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~-------~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQL-------GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccch-------hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34555678999999999999999887443 3578999999999999999999999999999 666667788899
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT 600 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~ 600 (733)
++.|+-.+|-.+++...+|+-.+..+=.--...+.+-|..+.+++|...++... .+..++.+...+.+..+....
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~-~~~~d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR-KKYKDDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh-hhcccchhhHHHHHHHHhhcc
Confidence 999999999999999998885444422222344568889999999998888732 222235545555555555444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-05 Score=82.31 Aligned_cols=249 Identities=11% Similarity=0.010 Sum_probs=155.8
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHH----H-----HhhccCCChHHHH-HHHHHHHHH-----------HHHHHH
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVS----K-----LDISRISDSDERK-LLLDINIAR-----------SRTAWE 192 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~----~-----~~~~~~~~~~e~~-~~l~~l~~r-----------A~~a~~ 192 (733)
.-..+|+.++-.|++..|+--|+++.-+.+ + ...++.++ .++. -+...|... +-..|.
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~-~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG-CEQDSALMDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC-HhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence 345789999999999999999999975544 1 12233322 1211 122222221 234567
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
..++..|+.+.+|+++++|+.... |.-.|..+...+. +++|+-.|..|..+ .|
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~a-------lilKG~lL~~~~R---~~~A~IaFR~Aq~L---ap-------------- 365 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEA-------LILKGRLLIALER---HTQAVIAFRTAQML---AP-------------- 365 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchH-------HHhccHHHHhccc---hHHHHHHHHHHHhc---ch--------------
Confidence 899999999999999999986543 7778999999999 99999999999988 33
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-HHHHHhcCCh-HHHHHHHHHhhhccCCchHHH
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA-MKAWLGLGRY-NEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-~~il~~~g~~-deAi~~l~~~l~~~~~~~~~~ 350 (733)
.+..+++.|..+|+..|.+.+|...-+-.-+.. +....++-+- ..++.-.+.. ++|-+.+...+...|......
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~----~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV 441 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF----QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV 441 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh----hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH
Confidence 345599999999999999999986655544421 1222222221 1233333332 355555555554333333222
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
+..+++.. ...+ .+.++.++++.+ ..-||+
T Consensus 442 ~~~AEL~~--------------------~Eg~-~~D~i~LLe~~L--~~~~D~--------------------------- 471 (564)
T KOG1174|consen 442 NLIAELCQ--------------------VEGP-TKDIIKLLEKHL--IIFPDV--------------------------- 471 (564)
T ss_pred HHHHHHHH--------------------hhCc-cchHHHHHHHHH--hhcccc---------------------------
Confidence 22222111 1111 133444444444 122211
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV 474 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~ 474 (733)
.+|.. .|...--.+.|++|.+.|..||.++|.++
T Consensus 472 -------~LH~~---Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 472 -------NLHNH---LGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred -------HHHHH---HHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 22333 58888889999999999999999999875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00084 Score=76.08 Aligned_cols=355 Identities=13% Similarity=0.072 Sum_probs=198.4
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHH-HHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc-------
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYL-TFAKSALSKNETNSLNDALKLMNEALELCEKGLGEART------- 263 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~-~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~------- 263 (733)
..|+-++|..++..+..-++.++ +|| -+|..+-..++ |.+|++||+.|+.+ ++.+..-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~--------vCwHv~gl~~R~dK~---Y~eaiKcy~nAl~~---~~dN~qilrDlslL 118 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSH--------VCWHVLGLLQRSDKK---YDEAIKCYRNALKI---EKDNLQILRDLSLL 118 (700)
T ss_pred cccchHHHHHHHHHHhccCcccc--------hhHHHHHHHHhhhhh---HHHHHHHHHHHHhc---CCCcHHHHHHHHHH
Confidence 68999999999999998887765 466 57999888899 99999999999998 5443210
Q ss_pred -------------chhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH--------HHHHHH
Q 004720 264 -------------REETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP--------VLAMKA 322 (733)
Q Consensus 264 -------------~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~--------~lk~~i 322 (733)
.-..-++.+.+-.-|...|.++...|+|..|...++...+.. + ..|+.. .-+..+
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~---~-~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ---N-TSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---c-cCCCHHHHHHHHHHHHHHHH
Confidence 000001111122356677888888899999999988887742 1 234433 344456
Q ss_pred HHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhc-CCCC
Q 004720 323 WLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAG-DEGD 400 (733)
Q Consensus 323 l~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~-~~~s 400 (733)
+...|.+++|.+.+.+.=...-+...+-..-+++++..++ +.|...++.++ .+..+. ...-..+...+. ...+
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll----~rnPdn-~~Yy~~l~~~lgk~~d~ 269 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL----ERNPDN-LDYYEGLEKALGKIKDM 269 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH----hhCchh-HHHHHHHHHHHHHHhhh
Confidence 7777899999988764321111122222233455555555 45555554332 222211 111110001100 0000
Q ss_pred CcchHHHHHHHHHHHHhhhHHH--------HHHHhhcchhHHH-hhHHHHH-------HHHHHHHHHhcCCHHHH-----
Q 004720 401 GVSEAAVKLRAKAVAELVSDER--------VLALFVGDAAAKE-RIAMHAV-------LWNCASILFRSKDYEAS----- 459 (733)
Q Consensus 401 p~~~~~l~~ka~~l~~l~~~e~--------v~~~~~g~~~~~~-~~~~~~l-------lW~~g~~~~k~~~y~~A----- 459 (733)
+ ..+ ++ ++..+-...+ -.....|...... ..++... ++.--...++.-. ..+
T Consensus 270 ~---~~l-k~--ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~L 342 (700)
T KOG1156|consen 270 L---EAL-KA--LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE-KVAFLEKL 342 (700)
T ss_pred H---HHH-HH--HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh-HhHHHHHH
Confidence 0 000 00 0000000000 0111111111110 0000000 0111122222211 111
Q ss_pred HHHHHHhhc----cCCCC---chhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHH
Q 004720 460 AEMFEKSML----YLPFD---VENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 460 ~~~y~~aL~----~~~~~---~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e 531 (733)
+--|.-.|. +++.| .+.+....-.++-++.-|-.+|+++.|.++++.|+..-| -+--....++|+.+.|+.+
T Consensus 343 vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 343 VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChH
Confidence 111112221 22211 122345556688899999999999999999999999988 5566667889999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 532 GAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+|..-++...+....+.-+-+-|+-.-.+....+.|.+.+.....
T Consensus 423 eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 423 EAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 999999999887544444555778777888888888777766655
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=74.08 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 439 MHAVLWNCASILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 439 ~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+..++.+.|..++..|+|++|+++|++++.+.. .+. +++..+.++.++|.||..+|++++|++++++|+++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677899999999999999999999997632 222 24678999999999999999999999999999875
|
... |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00057 Score=72.27 Aligned_cols=397 Identities=15% Similarity=0.115 Sum_probs=220.5
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHH
Q 004720 111 AADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTA 190 (733)
Q Consensus 111 a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a 190 (733)
|--||+.....+..++ -..-...|-.++.+|+|+.|...|+-+++-. +.+++..+ +-|-+.
T Consensus 41 AislLefk~~~~~EEE-----~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--------~~~~el~v------nLAcc~ 101 (557)
T KOG3785|consen 41 AISLLEFKLNLDREEE-----DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--------DAPAELGV------NLACCK 101 (557)
T ss_pred HHHHHHHhhccchhhh-----HHHHHHHHHHHHhhccHHHHHHHHHHHhccC--------CCCcccch------hHHHHH
Confidence 4456666655544333 2334566778889999999999998887621 12222222 223344
Q ss_pred HHccCHHHHHHHHHHHHhh------h----hcCch------hHHHHHHH---HHHHhHHHHhcCCCCCHHHHHHHHHHHH
Q 004720 191 WEVLEQNLAITLLNRAKCL------L----FGLFE------HYKSLANQ---YLTFAKSALSKNETNSLNDALKLMNEAL 251 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l------~----~~~~~------~~~~La~~---~~~~G~~~~~~~~~~~~e~A~~~l~~Al 251 (733)
.-.|.+.+|...-.+|-+- . -...+ .+..|-+. ...++..++.+-. |.+|+..|++.+
T Consensus 102 FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H---YQeAIdvYkrvL 178 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH---YQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4566666666655544210 0 00000 01111111 1222333334444 666766666655
Q ss_pred HHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHH
Q 004720 252 ELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNE 331 (733)
Q Consensus 252 el~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~de 331 (733)
.- ++ +.. ..-..+|.||.+.+.|+-+.+.++.-... -+..|-+.-+++-.+.++=+...
T Consensus 179 ~d---n~-------------ey~-alNVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 179 QD---NP-------------EYI-ALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred hc---Ch-------------hhh-hhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccch
Confidence 43 22 111 24456799999999999999888655542 23555566777766666644444
Q ss_pred HHHHHHHhhhccCCchHHHHhHHHHHHHhc------hhhhHHHHHHHHH-----------hhhccCCchHHHHHHHHHHh
Q 004720 332 AELELRGMVEIKGIPECIWVSAVEAYFQAA------GTAGAETAKGVFL-----------GLLGRCHVSAKAAVRMAHRV 394 (733)
Q Consensus 332 Ai~~l~~~l~~~~~~~~~~ls~~~ly~~~~------~~~a~~~lk~~l~-----------~ll~~~~~~~~~a~~~l~~~ 394 (733)
|..+...++.+.+..-.+ ++-+..|+ .+-|++.+-.++. ..+...+ -..|..++..+
T Consensus 238 ae~E~k~ladN~~~~~~f----~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d--VqeA~~L~Kdl 311 (557)
T KOG3785|consen 238 AEDEKKELADNIDQEYPF----IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND--VQEAISLCKDL 311 (557)
T ss_pred hHHHHHHHHhcccccchh----HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc--HHHHHHHHhhc
Confidence 555555555444322222 12222222 1344444443321 1222222 24555554444
Q ss_pred hcCCCCCcchHHHHHHHHHH----HHhhhHHHHH--HHhh---cchhHH--H---hhHHHHHHHHHHHHHHhcCCHHHHH
Q 004720 395 AGDEGDGVSEAAVKLRAKAV----AELVSDERVL--ALFV---GDAAAK--E---RIAMHAVLWNCASILFRSKDYEASA 460 (733)
Q Consensus 395 l~~~~sp~~~~~l~~ka~~l----~~l~~~e~v~--~~~~---g~~~~~--~---~~~~~~llW~~g~~~~k~~~y~~A~ 460 (733)
+|..|-.+.-|+.+. +++.+.|-+. +-|. |..... + +.+ ++...|-..+|++-+
T Consensus 312 -----~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs-------mAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 312 -----DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS-------MASYFFLSFQFDDVL 379 (557)
T ss_pred -----CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH-------HHHHHHHHHHHHHHH
Confidence 454444444455544 3344443321 1111 222111 1 111 455667778888877
Q ss_pred HHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHH-HHHHHHHhcCCHHHHHHHHH
Q 004720 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAF-LKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 461 ~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~-~~~ki~l~~gd~e~Al~~l~ 538 (733)
-+.+-.-.++.+|. .-..|+|.++...|.|.+|.+.+-+...-+- +..++. .++++|++.+.-+.|-..+-
T Consensus 380 ~YlnSi~sYF~NdD-------~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 380 TYLNSIESYFTNDD-------DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHhcCcc-------hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 66654444444332 2358999999999999999999975433221 333333 47999999999999998886
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 539 AMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 539 ~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
++-...+ .-.+|.+-+++|-+++..-.+.+|+..|=.
T Consensus 453 k~~t~~e-~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 453 KTNTPSE-RFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred hcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 6544322 346899999999999999999999976644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=94.10 Aligned_cols=132 Identities=13% Similarity=-0.045 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|.+....|.|++|..|++.++.+.|.+ .....+++.+..+++++++|.+.++++++.+| +...++.++
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3457999999999999999999999998844 46789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.+..+.|.+++|+.+|+++....+.+++.+.--++...+.|..+.|+.+++..++..+.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 999999999999999999998666667755555688889999999999999988855554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.1e-06 Score=69.75 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+++|+.++...|.+. .++..++.||...+++++|.++++++.+..| +....+.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 34689999999999999999999998877542 5789999999999999999999999999999 777888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 004720 522 KIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
.++...|++++|...+......
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHcc
Confidence 9999999999999998877654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00034 Score=82.28 Aligned_cols=303 Identities=15% Similarity=0.024 Sum_probs=156.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
|..-...|++.+|+..+++..............++..+..+.+++...|= +.+|+.+++++++.+.-...+..-...
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf---~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGF---QKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 44555889999999998888866544334456688888889998888888 888898999988865432111100000
Q ss_pred ----------------hhhhhhcHHHHHHHHHHHHhccCc---HH---HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q 004720 267 ----------------TTELKGLKFKTLRFISAIHLQKGE---YE---SVIKCVRVLREGSFDGGDHHASLPVLAMKAWL 324 (733)
Q Consensus 267 ----------------~~~~~el~~~~l~~La~~yl~~~~---~e---kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~ 324 (733)
-+....+. ++..|-+-....+. -| -+.+|+-..++. -.+|+.++..+.-++
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h--~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-----~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMH--YLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-----AIHMYPWYNLGINYL 786 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHH--HHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-----hhccchHHHHhHHHH
Confidence 00000000 00000000000110 01 123443333332 234555555554444
Q ss_pred h------cCCh--HHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHh-h---------------hccC
Q 004720 325 G------LGRY--NEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLG-L---------------LGRC 380 (733)
Q Consensus 325 ~------~g~~--deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~-l---------------l~~~ 380 (733)
+ .+.+ ..|+..+...++..-++..+|-.++-+ - ..-++...+.++.. + +.-.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-s---g~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-S---GIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-h---ccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 3 2222 257777777765555555555332222 1 11112222222211 0 0000
Q ss_pred CchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc--hhH-HHhhHHHHHHHHHH-HHHHhcCCH
Q 004720 381 HVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD--AAA-KERIAMHAVLWNCA-SILFRSKDY 456 (733)
Q Consensus 381 ~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~--~~~-~~~~~~~~llW~~g-~~~~k~~~y 456 (733)
..+..-+-.++++.- ..+|.+..+|.+++........--....+|. | .+. ++-.....-+|... ..+...|++
T Consensus 863 n~d~E~A~~af~~~q--SLdP~nl~~WlG~Ali~eavG~ii~~~~lfa-Hs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQ--SLDPLNLVQWLGEALIPEAVGRIIERLILFA-HSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred cccHHHhhHHHHhhh--hcCchhhHHHHHHHHhHHHHHHHHHHHHHHH-hhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 001222333444554 4678888888888777665542222222222 2 111 12233344577644 667888999
Q ss_pred HHHHHHHHH------hhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 457 EASAEMFEK------SMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 457 ~~A~~~y~~------aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
++.+.--+. ++..+..+ +|+.+-.|...+.....+++|..|.+.+.+...
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~---~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLG---HPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhc---CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888776664 33333322 256777788888888888888888888877543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=87.69 Aligned_cols=265 Identities=10% Similarity=-0.013 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
++.+..-+..+..+|++++|+..+..+....|..+. .||..|..++.+++ +.++.-. ++++++.....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-------~yy~~G~l~~q~~~---~~~~~lv--~~l~~~~~~~~ 98 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-------ALYISGILSLSRRP---LNDSNLL--NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-------hHHHHHHHHHhhcc---hhhhhhh--hhhhhcccccc
Confidence 344444466788999999999999999998888664 47888888888888 8888755 77777554321
Q ss_pred Ccccchh---hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHH
Q 004720 260 EARTREE---TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELEL 336 (733)
Q Consensus 260 ~~~~~~~---~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l 336 (733)
..-.... ..+..+.+ .+++.||.||-..|++++|...++.+.+. .+.+|.++-.-+-.|... +.++|+..+
T Consensus 99 ~~~ve~~~~~i~~~~~~k-~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 99 WAIVEHICDKILLYGENK-LALRTLAEAYAKLNENKKLKGVWERLVKA----DRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred hhHHHHHHHHHHhhhhhh-HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 1000000 00001111 27888999999999999999999988886 456777665555555555 778888877
Q ss_pred HHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 004720 337 RGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAE 416 (733)
Q Consensus 337 ~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~ 416 (733)
.+.+.. |+...+ ......+..+++ ...|++.+.+.+-...+..
T Consensus 173 ~KAV~~--------------~i~~kq---------------------~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~ 215 (906)
T PRK14720 173 KKAIYR--------------FIKKKQ---------------------YVGIEEIWSKLV--HYNSDDFDFFLRIERKVLG 215 (906)
T ss_pred HHHHHH--------------HHhhhc---------------------chHHHHHHHHHH--hcCcccchHHHHHHHHHHh
Confidence 655531 221111 012222223333 4556555544221111111
Q ss_pred hhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC
Q 004720 417 LVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL 496 (733)
Q Consensus 417 l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~ 496 (733)
.....++.+ +..-+| +-+.+.++|++++++++.+|++.|.|. +....++.||. +.
T Consensus 216 ~~~~~~~~~-------------~~~~l~---~~y~~~~~~~~~i~iLK~iL~~~~~n~-------~a~~~l~~~y~--~k 270 (906)
T PRK14720 216 HREFTRLVG-------------LLEDLY---EPYKALEDWDEVIYILKKILEHDNKNN-------KAREELIRFYK--EK 270 (906)
T ss_pred hhccchhHH-------------HHHHHH---HHHhhhhhhhHHHHHHHHHHhcCCcch-------hhHHHHHHHHH--HH
Confidence 111111111 111233 346788999999999999999988653 56788899998 44
Q ss_pred HHHHHHHHHHHHhh-----CC-ChHHHHHHHHHHH
Q 004720 497 IDRAQEYITEAEKL-----EP-NIASAFLKFKIYL 525 (733)
Q Consensus 497 ~~~A~e~~~~A~~l-----dp-~~~t~~~~~ki~l 525 (733)
|.. ...+++.+++ .+ ++.-.+..|.-++
T Consensus 271 Y~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 271 YKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred ccC-cchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 433 4445554444 22 3444555555554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=86.71 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=85.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|+.+|..++|+.|++.|..++-+.| +.++.++|++.||+++++++.+.+.|.+|++++| .+...|.+....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP-------~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINP-------TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCC-------CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 89999999999999999999999876 4467899999999999999999999999999999 799999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcc
Q 004720 525 LQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~ 544 (733)
++...+++||.++....++.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999886554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0087 Score=67.48 Aligned_cols=329 Identities=14% Similarity=0.091 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhh------------------------hcCchhHHHHHHHHHHHhHHHHhcCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLL------------------------FGLFEHYKSLANQYLTFAKSALSKNET 237 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~------------------------~~~~~~~~~La~~~~~~G~~~~~~~~~ 237 (733)
++-.||-.+-++|+|++|...|+....-. ...|.....--+.+||.+..+...|+
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk- 190 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK- 190 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc-
Confidence 55567777788888888888877762111 00111112244679999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH-
Q 004720 238 NSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP- 316 (733)
Q Consensus 238 ~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~- 316 (733)
|.+|++.|++|+++|.+...+..+.++.. .+-...+...|+-++...|+-++|...|....+.+ -...|+..
T Consensus 191 --y~qA~elL~kA~~~~~e~l~~~d~~eEei--e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av 263 (652)
T KOG2376|consen 191 --YNQAIELLEKALRICREKLEDEDTNEEEI--EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAV 263 (652)
T ss_pred --HHHHHHHHHHHHHHHHHhhcccccchhhH--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHH
Confidence 99999999999999877544443332211 11123355567888888898899998776666532 11222211
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhh
Q 004720 317 -VLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVA 395 (733)
Q Consensus 317 -~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l 395 (733)
...+-++.+-.++ +..+ ++...+.. + . ... .++
T Consensus 264 ~~NNLva~~~d~~~----------------~d~~---------------~l~~k~~~----~--~----~l~-----~~~ 297 (652)
T KOG2376|consen 264 AVNNLVALSKDQNY----------------FDGD---------------LLKSKKSQ----V--F----KLA-----EFL 297 (652)
T ss_pred Hhcchhhhcccccc----------------CchH---------------HHHHHHHH----H--H----HhH-----HHH
Confidence 1111111111110 0000 00000000 0 0 000 000
Q ss_pred cCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch
Q 004720 396 GDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE 475 (733)
Q Consensus 396 ~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~ 475 (733)
. ..+.. ..-..++-|.+.-.+-.+.-+.+-+ .+...-+.-++
T Consensus 298 ------------l------~~Ls~-----------------~qk~~i~~N~~lL~l~tnk~~q~r~---~~a~lp~~~p~ 339 (652)
T KOG2376|consen 298 ------------L------SKLSK-----------------KQKQAIYRNNALLALFTNKMDQVRE---LSASLPGMSPE 339 (652)
T ss_pred ------------H------HHHHH-----------------HHHHHHHHHHHHHHHHhhhHHHHHH---HHHhCCccCch
Confidence 0 00000 0001122233333333333333332 22222111111
Q ss_pred hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhccC
Q 004720 476 NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQIL--------AMTICLD 545 (733)
Q Consensus 476 ~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~--------~~~~~~~ 545 (733)
....-+++....|-.+ .+.+|.+++...-+-+| + ....+.+..+.+..|+++.|++-+. .+.+...
T Consensus 340 --~~~~~ll~~~t~~~~~--~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 340 --SLFPILLQEATKVREK--KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred --HHHHHHHHHHHHHHHH--HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 1222344444445544 78999999998888888 4 7788889999999999999999998 4444333
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH---hhcCChhHHHH
Q 004720 546 FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT---QETGNESEVLK 611 (733)
Q Consensus 546 ~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~---~~~~~~~~~l~ 611 (733)
.|.+....+.+-.+.++..-+...|..-+.-+....+.. ..++++++.+. ...|...+...
T Consensus 416 -~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s----~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 416 -LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS----IALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred -ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc----hHHHhHHHHHhHHHHhcCchHHHHH
Confidence 677777777777776666666666655554333221112 45566666642 22355544333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.4e-06 Score=68.80 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
..++...+.++..+|++++|+.++++|+++....++....++..++++|.++...|+ +++|..++++|+++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhc
Confidence 356777899999999999999999999999545666667789999999999999999 9999999999999865
|
... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5e-06 Score=87.01 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
..|+.||+.++|..|++.|+.+|.-...|. .-++-+|.|+|.|.+.+|+|-.|+++|..|++++| +..+.+..+++
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~---dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADP---DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCc---cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 389999999999999999999998776664 47899999999999999999999999999999999 99999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 004720 524 YLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~ 543 (733)
++..+.+++|++-.+.....
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 99999988888776655443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00081 Score=71.39 Aligned_cols=340 Identities=17% Similarity=0.086 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
+++....+..|...+...++..|+...++-.+-+..+. . .|..|.+-+.+-.++|.+++++.+.---++
T Consensus 3 q~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-~----------Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~ 71 (518)
T KOG1941|consen 3 QDQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-G----------RFRVLGCLVTAHSEMGRYKEMLKFAVSQID 71 (518)
T ss_pred cchhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-H----------HHHHhccchhhhhhhHHHHHHHHHHHHHHH
Confidence 45667788889999999999999988888776554322 1 267777777788888888776665333333
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
.... -.....+-..|.|+.+..-..-+ +.+++.+-+-.+.+ +.+...-.. ..+...++++++..
T Consensus 72 ~a~~-~~ds~~~~ea~lnlar~~e~l~~---f~kt~~y~k~~l~l---pgt~~~~~~---------gq~~l~~~~Ahlgl 135 (518)
T KOG1941|consen 72 TARE-LEDSDFLLEAYLNLARSNEKLCE---FHKTISYCKTCLGL---PGTRAGQLG---------GQVSLSMGNAHLGL 135 (518)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHhcC---CCCCccccc---------chhhhhHHHHhhhH
Confidence 2221 12233455677788777666666 66666655555554 211111011 13555689999999
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHH
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAE 367 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~ 367 (733)
+.|+++++.++.+.++.. +..+|. ...-+|+++..+|..... ++++-
T Consensus 136 s~fq~~Lesfe~A~~~A~--~~~D~~------------------------------LElqvcv~Lgslf~~l~D~~Kal~ 183 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAH--NNDDAM------------------------------LELQVCVSLGSLFAQLKDYEKALF 183 (518)
T ss_pred HHHHHHHHHHHHHHHHhh--ccCCce------------------------------eeeehhhhHHHHHHHHHhhhHHhh
Confidence 999999999887776431 112222 112345555555533222 22222
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHH
Q 004720 368 TAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCA 447 (733)
Q Consensus 368 ~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g 447 (733)
+..
T Consensus 184 f~~----------------------------------------------------------------------------- 186 (518)
T KOG1941|consen 184 FPC----------------------------------------------------------------------------- 186 (518)
T ss_pred hhH-----------------------------------------------------------------------------
Confidence 221
Q ss_pred HHHHhcCCHHHHHHHHHHhhccC----CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CC--ChHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYL----PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EP--NIAS 516 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~----~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp--~~~t 516 (733)
+|.++. -.|... ..++-+++.++..+-.+|.+..|.++|++|-++ |. +..+
T Consensus 187 -----------------kA~~lv~s~~l~d~~~-kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc 248 (518)
T KOG1941|consen 187 -----------------KAAELVNSYGLKDWSL-KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARC 248 (518)
T ss_pred -----------------hHHHHHHhcCcCchhH-HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence 111110 011110 234566788899999999999999999999777 22 4455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc----CC--ChHHHHHHHH--HHHHcCCH---HHHHHHHHHHHhhhcCCCCCc
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTICL----DF--TTDFLSLAAH--EAVACQAL---SVAVAALSNLLNFYTSGKPMP 585 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~~----~~--~~~lL~la~~--~a~~~~~~---~~a~~aL~~Ll~~~~~~~~~~ 585 (733)
...++.||-..||.|.|...|+...... |. ....|.-++. +..+..++ -.++..-+.+++.-++- ..
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I--G~ 326 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI--GA 326 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh--hh
Confidence 5678999999999999998887765443 21 1112211111 11111111 11444445666622211 02
Q ss_pred hhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcc
Q 004720 586 TKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIG 624 (733)
Q Consensus 586 ~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~ 624 (733)
.+++-=+||....|=+..|..|+.=.++.+|.+...+.+
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~~ 365 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEETE 365 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 233333444444444556788888888888888776653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=77.37 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+...|+|++|+.+|+.++...|.. .+.+.++.++|.+|.++|++++|++++.++++.+| ++...+.+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDP----NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4468999999999999999999999876643 24567899999999999999999999999999999 787777888
Q ss_pred HHHHhcCCHHHHHH
Q 004720 522 KIYLQKNDQEGAIN 535 (733)
Q Consensus 522 ki~l~~gd~e~Al~ 535 (733)
.++...|+.+.|..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 88888877554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=76.68 Aligned_cols=91 Identities=14% Similarity=-0.034 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|..+...|+|++|+.+|+.++.+.|.. ...+.++.++|.+|...|++++|++++++|++++| +..+.+.+..+
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~----~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDP----YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccc----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 47899999999999999999999876532 34566899999999999999999999999999999 77777777777
Q ss_pred HH-------hcCCHHHHHHHHHH
Q 004720 524 YL-------QKNDQEGAINQILA 539 (733)
Q Consensus 524 ~l-------~~gd~e~Al~~l~~ 539 (733)
+. ..|+++.|+..++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 77 77777755555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00027 Score=75.52 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH-H
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ-E 531 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~-e 531 (733)
.+|++|.-.|+.-..-++ ...+++..++.|++.+|+|++|.+.+.+|+..+| ++.+..++.-+....|+. +
T Consensus 181 e~~~~A~y~f~El~~~~~-------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFG-------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp TCCCHHHHHHHHHHCCS---------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred hhHHHHHHHHHHHHhccC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 479999999999655443 2357889999999999999999999999999999 899999999999999988 6
Q ss_pred HHHHHHHHHHhccCCChHHHHH
Q 004720 532 GAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.+-+.+..+....+.+|=+..+
T Consensus 254 ~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHH
Confidence 6667777777776666643333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.1e-06 Score=66.38 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
..|..+++.|+|++|++.|+.++...|. ...+++.+|.|+...|++++|+++++++++.+| ++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-------NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4789999999999999999999998764 456899999999999999999999999999999 54
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.8e-05 Score=69.53 Aligned_cols=111 Identities=13% Similarity=-0.042 Sum_probs=96.3
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
.|..++...|.+ ......++.+|+..|++++|.+.++++...+| ++...+.+..++...|++++|+..++..
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677766533 45688999999999999999999999999999 8999999999999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 541 TICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 541 ~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
....+.+++.....+......|+.+.|+..++..++...
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 888877888777777788889999999999999998443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.7e-05 Score=82.22 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=100.4
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
..|...-..|+.+++.++ |..|..-|++|+..++...+... +.......++..++.+|+.||++.+.|.+|+...
T Consensus 206 ~~A~~~ke~Gn~~fK~gk---~~~A~~~Yerav~~l~~~~~~~~--ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c 280 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGK---FKLAKKRYERAVSFLEYRRSFDE--EEQKKAEALKLACHLNLAACYLKLKEYKEAIESC 280 (397)
T ss_pred HHHHHHHHhhhHHHhhch---HHHHHHHHHHHHHHhhccccCCH--HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Confidence 355667788999999999 99999999999999875433221 2333446677889999999999999999999998
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
+.++.. .+.++-++|-++++++..|+|+.|+..+++++...|.+-.+
T Consensus 281 ~kvLe~----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 281 NKVLEL----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHHhc----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 888875 56788999999999999999999999999999655544444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.2e-06 Score=67.81 Aligned_cols=65 Identities=23% Similarity=0.235 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcc
Q 004720 480 RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN-DQEGAINQILAMTICL 544 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g-d~e~Al~~l~~~~~~~ 544 (733)
+|..+.++|.++...|++++|+++|+++++++| ++...+.+..++...| ++++|++++++..++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999 8999999999999999 7999999999988763
|
... |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.6e-05 Score=89.56 Aligned_cols=123 Identities=9% Similarity=0.017 Sum_probs=77.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
|.+....|.+++|+..++++.++.|++.. +..+++..+.+.+. +++|..+++++++. +|.+
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-------a~~~~a~~L~~~~~---~eeA~~~~~~~l~~---~p~~------ 153 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSE-------AFILMLRGVKRQQG---IEAGRAEIELYFSG---GSSS------ 153 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHhcc---HHHHHHHHHHHhhc---CCCC------
Confidence 55566666777777777777766666442 35566666666666 67777666666666 3311
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
+..+..+|.+..+.|.|++|+.+|+.+... ++.++.+++-.+.++...|+.++|...+++.+
T Consensus 154 --------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 154 --------AREILLEAKSWDEIGQSEQADACFERLSRQ----HPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred --------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 224555666666667777777666666652 34556666666666666677776666666655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.002 Score=66.92 Aligned_cols=275 Identities=17% Similarity=0.185 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH---
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP--- 316 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~--- 316 (733)
|++++++++.-.+- .+. ....+..||-||....+|..|-.||+.+-. .+|.-.
T Consensus 26 y~DaI~~l~s~~Er---~p~--------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-------l~P~~~qYr 81 (459)
T KOG4340|consen 26 YADAIQLLGSELER---SPR--------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQ-------LHPELEQYR 81 (459)
T ss_pred HHHHHHHHHHHHhc---Ccc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hChHHHHHH
Confidence 88888777654443 221 112688899999999999999999999865 566643
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhc
Q 004720 317 VLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAG 396 (733)
Q Consensus 317 ~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~ 396 (733)
+-...-+++.+.+.+|+..+.++..++. -.+-++. ++..- + +
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~~~-L~~~~lq-------------LqaAI------------------k----Y-- 123 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDNPA-LHSRVLQ-------------LQAAI------------------K----Y-- 123 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCHH-HHHHHHH-------------HHHHH------------------h----c--
Confidence 5556677888999999998776643211 1110100 00000 0 0
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh
Q 004720 397 DEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN 476 (733)
Q Consensus 397 ~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~ 476 (733)
.+.|...+ ..+-+... |.... ..+-|.|...|+.|+|+.|++-|+.++.+-.-++
T Consensus 124 --se~Dl~g~-----rsLveQlp---------~en~A-------d~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-- 178 (459)
T KOG4340|consen 124 --SEGDLPGS-----RSLVEQLP---------SENEA-------DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-- 178 (459)
T ss_pred --ccccCcch-----HHHHHhcc---------CCCcc-------chhccchheeeccccHHHHHHHHHHHHhhcCCCc--
Confidence 00000000 00001000 00001 1233689999999999999999999998765442
Q ss_pred hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hhCC--ChH------------------------HHHHHHHHHHh
Q 004720 477 RILRAKSFRVLCLCYLGLSLIDRAQEYITEAE----KLEP--NIA------------------------SAFLKFKIYLQ 526 (733)
Q Consensus 477 ~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~----~ldp--~~~------------------------t~~~~~ki~l~ 526 (733)
-+-+|+++||.+.++++.|.++..+.. +-.| .+- ...+.|-|+.+
T Consensus 179 -----llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 179 -----LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred -----hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 245999999999999999998877654 3344 221 01246788888
Q ss_pred cCCHHHHHHHHHHHHhccCC--Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhc
Q 004720 527 KNDQEGAINQILAMTICLDF--TT-DFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQET 603 (733)
Q Consensus 527 ~gd~e~Al~~l~~~~~~~~~--~~-~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~ 603 (733)
.||++-|.+.+-.|---.+. +| ++..+|...+ .+..-.-..-|..|++. .|.|.+..+- ++-+.-+.
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~--~~~p~~g~~KLqFLL~~----nPfP~ETFAN---lLllyCKN- 323 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM--DARPTEGFEKLQFLLQQ----NPFPPETFAN---LLLLYCKN- 323 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc--cCCccccHHHHHHHHhc----CCCChHHHHH---HHHHHhhh-
Confidence 99998888776444221111 22 3444443322 12222223445566663 3456655442 21111111
Q ss_pred CChhHHHHHHHHHHHHhhhc
Q 004720 604 GNESEVLKYMKRAHARTSEI 623 (733)
Q Consensus 604 ~~~~~~l~~~~~A~~~l~~~ 623 (733)
+||..|...+.+.
T Consensus 324 -------eyf~lAADvLAEn 336 (459)
T KOG4340|consen 324 -------EYFDLAADVLAEN 336 (459)
T ss_pred -------HHHhHHHHHHhhC
Confidence 4677777777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0013 Score=69.68 Aligned_cols=214 Identities=16% Similarity=0.201 Sum_probs=126.1
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhH
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~ 366 (733)
...+|..|+.+++..+... .+.+.+.....+.|+..+|+|.+|...+..++...+.+..++++++..++-.+. .
T Consensus 34 s~rDytGAislLefk~~~~---~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y 107 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLD---REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---Y 107 (557)
T ss_pred hcccchhHHHHHHHhhccc---hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---H
Confidence 3457999999988877632 233345668889999999999999999988887777778888887765543332 0
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC 446 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~ 446 (733)
...+.+ ..++. .+....+++-++- -++..++++..... .+..+.. .-+ ..
T Consensus 108 ~eA~~~----~~ka~-k~pL~~RLlfhla-------------------hklndEk~~~~fh~--~LqD~~E--dqL--SL 157 (557)
T KOG3785|consen 108 IEAKSI----AEKAP-KTPLCIRLLFHLA-------------------HKLNDEKRILTFHS--SLQDTLE--DQL--SL 157 (557)
T ss_pred HHHHHH----HhhCC-CChHHHHHHHHHH-------------------HHhCcHHHHHHHHH--HHhhhHH--HHH--hH
Confidence 111100 00111 1112222221111 11111111111111 0000000 000 16
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
+..+|..-.|++||+.|+..|...| +.--+--++|+||.++.=|+-+.+++.--++.-| ++...-+.+-...
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~-------ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNP-------EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 7888999999999999999987654 3334567899999999999999999999999988 6655444433333
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 004720 526 QKNDQEGAINQILAMTIC 543 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~ 543 (733)
+.=+-.-|....+.+..-
T Consensus 231 Rl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADN 248 (557)
T ss_pred hhhccchhHHHHHHHHhc
Confidence 322223344444555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0047 Score=66.75 Aligned_cols=291 Identities=15% Similarity=0.031 Sum_probs=169.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHH-hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF-AKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~-G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
+-..+..|+|.+|+..+.|+.+..+. | .+.|-. +...-.+|| ++.+=.|+.++-+. .+ +.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~-p-------~l~~l~aA~AA~qrgd---~~~an~yL~eaae~---~~-~~---- 151 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQ-P-------VLAYLLAAEAAQQRGD---EDRANRYLAEAAEL---AG-DD---- 151 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcc-h-------HHHHHHHHHHHHhccc---HHHHHHHHHHHhcc---CC-Cc----
Confidence 44556789999999999998765443 2 123333 345567788 99999999998886 21 11
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG- 344 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~- 344 (733)
...+....+...+..++++.|..-++.+.+. .+.+|.++-+..++|...|++++....+..+-+..-
T Consensus 152 --------~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 152 --------TLAVELTRARLLLNRRDYPAARENVDQLLEM----TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred --------hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh----CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 1124556688889999999999999888875 578999999999999999999998888765542110
Q ss_pred CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 345 IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
..+.+ .-++ .+++..+++....+.++.+-..+| +.
T Consensus 220 ~~~e~-----------------~~le-------------~~a~~glL~q~~~~~~~~gL~~~W-------~~-------- 254 (400)
T COG3071 220 SDEEA-----------------ARLE-------------QQAWEGLLQQARDDNGSEGLKTWW-------KN-------- 254 (400)
T ss_pred ChHHH-----------------HHHH-------------HHHHHHHHHHHhccccchHHHHHH-------Hh--------
Confidence 11111 1111 133333444432100000000111 00
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
.+.....-..+.=..+..+..-|++++|.+|...+|.-.-.+ . +.+- .-.++.++...=++..
T Consensus 255 -------~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-----~---L~~~--~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 255 -------QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-----R---LCRL--IPRLRPGDPEPLIKAA 317 (400)
T ss_pred -------ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-----h---HHHH--HhhcCCCCchHHHHHH
Confidence 000000000111124566678888888888888888532211 1 1111 1124456666666666
Q ss_pred HHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004720 505 TEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAAL 571 (733)
Q Consensus 505 ~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL 571 (733)
++.++.+| ++...+.+..++.+.+.+.+|-+.++...+..++..|...+| +.-.+.|....+...-
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la-~~~~~~g~~~~A~~~r 384 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA-DALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH-HHHHHcCChHHHHHHH
Confidence 66667777 565556667777777777777777776666555555555554 3344455555554333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-05 Score=85.43 Aligned_cols=111 Identities=16% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
|..+|..+...|+++.|+..|.+|+.+.|..+. +++++|.+++..|+ +++|+..+++++++ ++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~-------a~~~~a~~~~~~g~---~~eAl~~~~~Al~l---~P~~-- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE-------LYADRAQANIKLGN---FTEAVADANKAIEL---DPSL-- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CcCC--
Confidence 445688888999999999999999999998663 58899999999999 99999999999999 5422
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL 324 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~ 324 (733)
..++..+|.+|...|+|++|+.+++.+.++ .+.++....+..+|..
T Consensus 70 ------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l----~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 70 ------------AKAYLRKGTACMKLEEYQTAKAALEKGASL----APGDSRFTKLIKECDE 115 (356)
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Confidence 226888999999999999999999999986 4566666555555433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00053 Score=69.37 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=109.6
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
+..+|..|...+..|+ |.+|+..|++........ . .-..++..+|.+|...|+|+.|+..++.
T Consensus 5 ~~~lY~~a~~~~~~g~---y~~Ai~~f~~l~~~~P~s---~-----------~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 5 AEALYQKALEALQQGD---YEEAIKLFEKLIDRYPNS---P-----------YAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp HHHHHHHHHHHHHCT----HHHHHHHHHHHHHH-TTS---T-----------THHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCC---h-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4569999999999999 999999999988873322 1 2234677889999999999999999988
Q ss_pred HHccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 301 LREGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 301 a~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
.... .+.||. +.|+.+.++......- . ....+ ... ...|+..++.+
T Consensus 68 fi~~----yP~~~~~~~A~Y~~g~~~~~~~~~~--~------~~~~D-~~~-------------~~~A~~~~~~l----- 116 (203)
T PF13525_consen 68 FIKL----YPNSPKADYALYMLGLSYYKQIPGI--L------RSDRD-QTS-------------TRKAIEEFEEL----- 116 (203)
T ss_dssp HHHH-----TT-TTHHHHHHHHHHHHHHHHHHH--H-------TT----HH-------------HHHHHHHHHHH-----
T ss_pred HHHH----CCCCcchhhHHHHHHHHHHHhCccc--h------hcccC-hHH-------------HHHHHHHHHHH-----
Confidence 7764 245554 3355555444331000 0 00000 000 01122222211
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
++++ ..|+--.++ ..+...+..... -=-+..|.-+++.|+|.
T Consensus 117 -------------i~~y---P~S~y~~~A-~~~l~~l~~~la---------------------~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 117 -------------IKRY---PNSEYAEEA-KKRLAELRNRLA---------------------EHELYIARFYYKRGKYK 158 (203)
T ss_dssp -------------HHH----TTSTTHHHH-HHHHHHHHHHHH---------------------HHHHHHHHHHHCTT-HH
T ss_pred -------------HHHC---cCchHHHHH-HHHHHHHHHHHH---------------------HHHHHHHHHHHHcccHH
Confidence 1122 111101000 011111111101 01123788999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
-|+.-|+..+.-+|.-. ........++.+|.++|+.+.|.+
T Consensus 159 aA~~r~~~v~~~yp~t~----~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTP----AAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999998653 455678899999999999885543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-05 Score=74.91 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
..|...|.+|+|++|..+|+.-....|.+ .+-...||.||..+++|++|+..|..|.-+++ +|...|....+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYN-------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 47889999999999999999876666654 34679999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 004720 524 YLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~ 543 (733)
++..|+.+.|+.|++.....
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999888774
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=69.37 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=98.2
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
..+..|+...+...+++...-.|.++ +-....+.+|..++..|+ +++|...|+++++- .+.
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~----ya~~A~l~lA~~~~~~g~---~~~A~~~l~~~~~~---~~d--------- 80 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSP----YAALAALQLAKAAYEQGD---YDEAKAALEKALAN---APD--------- 80 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhh---CCC---------
Confidence 34468888888888888887666653 234557778999999999 99999999998885 321
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
..++..+...|+.+++..|+|++|+..++.+.. ....|....+++.|+...|++++|+..++..
T Consensus 81 --~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 81 --PELKPLARLRLARILLQQGQYDEALATLQQIPD-----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 234445666799999999999999999876543 4456777799999999999999999998754
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00017 Score=75.09 Aligned_cols=192 Identities=10% Similarity=-0.008 Sum_probs=123.6
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
........|...++.|+|+.|+..|++..+..|.. +. ........|.++...|+++.|+..+++.+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------~~-----a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG------PY-----SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45567788999999999999999999988765410 01 01233455778889999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCC-------------C--CHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNET-------------N--SLNDALKLMNEALELCEKGLGEARTREETTELKGLKF 275 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~-------------~--~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~ 275 (733)
|+.|+ ...++|..|.++...+++ | ...+|+.-|++.++-.+..+-..........+.+..+
T Consensus 100 P~~~~----~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 100 PTHPN----IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred cCCCc----hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 99775 456889899876444311 1 0234556666655552221100001111111222223
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHc-cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLRE-GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~-~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
.--...|.-|++.|.|.-|+.-++.+.. .+. .+..+.+++...+++..+|..++|......+
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~--t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD--TQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3333567778888888888877766665 321 2333456688888999999988888776543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0011 Score=68.95 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=120.0
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
...|..|...+..|+ |++|+..|++.... .|.. +........||.+|+..++|++|+..++..
T Consensus 33 ~~~Y~~A~~~~~~g~---y~~Ai~~f~~l~~~---yP~s-----------~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 33 SEIYATAQQKLQDGN---WKQAITQLEALDNR---YPFG-----------PYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCC-----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 348889999999999 99999999998887 4321 223346778999999999999999999988
Q ss_pred HccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 302 REGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 302 ~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
.+.. +.||. +.|+++.+....+.. -+..+.. +...+ ++.. ...|+..++
T Consensus 96 i~~~----P~~~~~~~a~Y~~g~~~~~~~~~--~~~~~~~-~~~~~rD~~~-------------~~~A~~~~~------- 148 (243)
T PRK10866 96 IRLN----PTHPNIDYVLYMRGLTNMALDDS--ALQGFFG-VDRSDRDPQH-------------ARAAFRDFS------- 148 (243)
T ss_pred HHhC----cCCCchHHHHHHHHHhhhhcchh--hhhhccC-CCccccCHHH-------------HHHHHHHHH-------
Confidence 8863 45554 446666554333210 0000000 00000 0000 011122222
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAV--KLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD 455 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l--~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~ 455 (733)
+++ +.-|+..-.- ..+...+...... |- +.-|.-+++.|+
T Consensus 149 ---------------~li--~~yP~S~ya~~A~~rl~~l~~~la~-------------------~e--~~ia~~Y~~~~~ 190 (243)
T PRK10866 149 ---------------KLV--RGYPNSQYTTDATKRLVFLKDRLAK-------------------YE--LSVAEYYTKRGA 190 (243)
T ss_pred ---------------HHH--HHCcCChhHHHHHHHHHHHHHHHHH-------------------HH--HHHHHHHHHcCc
Confidence 222 1112110000 0111111111110 11 136888999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYIT 505 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~ 505 (733)
|.-|+.=|+..+.-+|.- +...+.+..+...|..+|..++|.+...
T Consensus 191 y~AA~~r~~~v~~~Yp~t----~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDT----QATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred hHHHHHHHHHHHHHCCCC----chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999988855 3566789999999999999999988765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=65.71 Aligned_cols=67 Identities=28% Similarity=0.435 Sum_probs=54.5
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 450 LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 450 ~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+++.|+|++|++.|+.++..+|.+ ..+...++.||++.|++++|.+.++++...+| ++..+.++.+|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 357899999999999999888755 35678999999999999999999999999999 56655555543
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=69.96 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
++.+...|-.....|+++.|...++-...++|.++.. ++++|.++..+|+ |++|+..|++|+.+ ++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-------~~gLG~~~Q~~g~---~~~AI~aY~~A~~L---~~d 101 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-------WFRLGECCQAQKH---WGEAIYAYGRAAQI---KID 101 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHHhh---HHHHHHHHHHHHhc---CCC
Confidence 3334444555567788888888888888777776543 6778888888888 88888888888877 543
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
+.+ ...++|.||+..|+.+.|.++++.+...
T Consensus 102 dp~--------------~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 102 APQ--------------APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred Cch--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 331 5667788888888888888887777664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.8e-05 Score=64.80 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=61.5
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
.+|+++.|+..++++....|.+++ ...++.+|.+++..|+ |++|+.++++ .+. ++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~-----~~~~~~la~~~~~~~~---y~~A~~~~~~-~~~---~~------------- 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPN-----SAYLYNLAQCYFQQGK---YEEAIELLQK-LKL---DP------------- 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHH-----HHHHHHHHHHHHHTTH---HHHHHHHHHC-HTH---HH-------------
T ss_pred CCccHHHHHHHHHHHHHHCCCChh-----HHHHHHHHHHHHHCCC---HHHHHHHHHH-hCC---CC-------------
Confidence 368999999999999999886432 2356678999999999 9999988888 433 11
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
....+...+|.|+++.|+|++|+++++.+
T Consensus 56 -~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 -SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 01225556799999999999999888753
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00025 Score=63.92 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---hHHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDFT---TDFLSLA 554 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~---~~lL~la 554 (733)
+.++.++..+.+.|++++|.+.+.++.+.+| + +...+.+..++...|++++|++.++.+....+.+ ++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5789999999999999999999999999988 5 3577889999999999999999999998765433 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 555 AHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 555 ~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+....+.++...++..++.+++..+.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 667777899999999999999965443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.5e-05 Score=72.90 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
..+.-+...++-||.+++.|.|..|..-|+.|++.++... ..++. =+|++||++.+.+++.+.|+..++||
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~------~e~rs---Ily~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS------TEERS---ILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc------HHHHH---HHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3355668888999999999999999999999999997533 22222 26779999999999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+++.|...+... ..+..|-+..+ |++|+.-|++.+++
T Consensus 161 iel~pty~kAl~-------RRAeayek~ek---~eealeDyKki~E~ 197 (271)
T KOG4234|consen 161 IELNPTYEKALE-------RRAEAYEKMEK---YEEALEDYKKILES 197 (271)
T ss_pred HhcCchhHHHHH-------HHHHHHHhhhh---HHHHHHHHHHHHHh
Confidence 999998665533 34444556666 99999999999998
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00041 Score=71.02 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=102.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|..++..|+|.+|+.-++++....|.|. +.+.-++.+|.++|+++.|...|.+|+++.| ++...-++.-.+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~-------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDW-------EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCCh-------hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 78999999999999999999999988664 5688999999999999999999999999999 899899999999
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAAL 571 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL 571 (733)
+..||.+.|...+.........++.+..-.+..-...|+.+.|...-
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999998887766654444444445688888886433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00017 Score=70.50 Aligned_cols=116 Identities=15% Similarity=0.019 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
...+.+......|..+...|+++.|...|++|+...+. +. + ....+...+.++...|++++|+.++.++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------~~-~---~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------PY-D---RSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------ch-h---hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33457788888999999999999999999999987431 00 0 0135566688899999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEK 256 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~ 256 (733)
..+.|..+.....++.++++.|..+...|+ ++.|..++.+++.+.++
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGD---SEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHccc---HHHHHHHHHHHHHHHHH
Confidence 999998887788899999999999999999 99999999988887555
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00019 Score=59.92 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC 561 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~ 561 (733)
++++++.++...|++++|...++++.+..| +....+....++...|++++|+++++......+.+++.....+......
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 578899999999999999999999999999 7778888999999999999999999999888776666655555666777
Q ss_pred CCHHHHHHHHHHHHh
Q 004720 562 QALSVAVAALSNLLN 576 (733)
Q Consensus 562 ~~~~~a~~aL~~Ll~ 576 (733)
|+.+.+...+...++
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 788888777776665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.9e-05 Score=61.22 Aligned_cols=63 Identities=17% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 486 VLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 486 ~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.+|..|++.|++++|++.|+++++.+| ++...+.+..++.+.|++++|+..++.+....+.+|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578899999999999999999999999 899999999999999999999999999988766554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00022 Score=72.07 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc--------CCCCchhhh----hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLY--------LPFDVENRI----LRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~--------~~~~~~~~~----~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
++-..||.+|+.|+|.+|...|..|+.. -|-++ .|. .+.-++-|.+.|+++.|+|=++++.+.+.++
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3446999999999999999999998732 13221 122 3455799999999999999999999999999
Q ss_pred hCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 510 LEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 510 ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.+| ++.++|.++|.+..--|.++|-..+..+..+.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 999 99999999999999999999999998888773
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.3e-05 Score=78.92 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=89.4
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
++..+.+-||.+++.++|..|..+|++++.--. +++.+..-+|.+||++-.-.|+|..|+.++++++.++
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc----------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC----------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC----------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999986421 2233445678899999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
|...+. ||.-+++++..+. +.+|+.|.+..+.+
T Consensus 150 P~h~Ka-------~~R~Akc~~eLe~---~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 150 PTHLKA-------YIRGAKCLLELER---FAEAVNWCEEGLQI 182 (390)
T ss_pred cchhhh-------hhhhhHHHHHHHH---HHHHHHHHhhhhhh
Confidence 986654 8888889999999 99999999999887
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=60.43 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=50.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.++++.++|+.|+++++.++...|.+. ..++.+|.||..+|++++|.++++++++.+| ++.....+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDP-------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccc-------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467788888888888888888877543 4677888888888888888888888888888 555444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.12 Score=57.28 Aligned_cols=316 Identities=15% Similarity=0.038 Sum_probs=183.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
.+.-|+--.+.|+...|...|++|.+...+. ..-..++..++.---.++. |+.|...|+=|++-+.++.
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d----~~~e~lfvaFA~fEe~qkE---~ERar~iykyAld~~pk~r---- 278 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDD----EEAEILFVAFAEFEERQKE---YERARFIYKYALDHIPKGR---- 278 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCccc----
Confidence 3344667778899999999999999865431 1122334466776667777 9999999999999865542
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH-----HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKC-----VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~-----l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.+...+-+...-.-|.+....+.++-. |+....- ++.+-.++|.-+++....|+.+.-.+.+.
T Consensus 279 --------aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~----np~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 279 --------AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK----NPYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred --------HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh----CCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111222333333334433345555421 2222221 45666677888888888899999888898
Q ss_pred HhhhccCC-chHH-HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 338 GMVEIKGI-PECI-WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 338 ~~l~~~~~-~~~~-~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+.|.++|. .+.- |-+.+-+.+.-. .+.. +.-.++ ..+..|-..++ +.-| |...-+
T Consensus 347 rAIanvpp~~ekr~W~RYIYLWinYa------lyeE-----le~ed~--ertr~vyq~~l--~lIP-HkkFtF------- 403 (677)
T KOG1915|consen 347 RAIANVPPASEKRYWRRYIYLWINYA------LYEE-----LEAEDV--ERTRQVYQACL--DLIP-HKKFTF------- 403 (677)
T ss_pred HHHccCCchhHHHHHHHHHHHHHHHH------HHHH-----HHhhhH--HHHHHHHHHHH--hhcC-cccchH-------
Confidence 88876653 3332 333332221110 0000 000010 11111112222 1222 111000
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHH-HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNC-ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~-g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
+=+|-+ +.-...+.+...|-...-.|+...|.+ |+++.-.-.-++|
T Consensus 404 -------------------------aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~--------KlFk~YIelElqL 450 (677)
T KOG1915|consen 404 -------------------------AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD--------KLFKGYIELELQL 450 (677)
T ss_pred -------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch--------hHHHHHHHHHHHH
Confidence 113432 233356677777777777777766643 6777777777788
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CChHHHHH-HHHHHHHcCCHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD-FTTDFLSL-AAHEAVACQALSVAVAAL 571 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~-~~~~lL~l-a~~~a~~~~~~~~a~~aL 571 (733)
+++|+....|++-+..+| +-.+-.-.+.+-...||+|.|...++-..+.+. .-|.+|-- -+.+-.++|..+.+.+..
T Consensus 451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 888888888888888888 544444445555567888888777777766653 24554333 355555677777787777
Q ss_pred HHHHhh
Q 004720 572 SNLLNF 577 (733)
Q Consensus 572 ~~Ll~~ 577 (733)
+.||+.
T Consensus 531 erlL~r 536 (677)
T KOG1915|consen 531 ERLLDR 536 (677)
T ss_pred HHHHHh
Confidence 777773
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00035 Score=73.45 Aligned_cols=98 Identities=16% Similarity=0.034 Sum_probs=82.3
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHH
Q 004720 445 NCASIL-FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFL 519 (733)
Q Consensus 445 ~~g~~~-~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~ 519 (733)
+.+..+ ++.|+|++|+..|+..+..+|.+. .....++.+|.+|...|++++|...|.++.+..| + +...+.
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345544 677999999999999999999763 3456789999999999999999999999998887 4 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
+..++...|+.++|+..|+.+.+..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 788888999999999999999877554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=66.18 Aligned_cols=186 Identities=14% Similarity=0.101 Sum_probs=114.7
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
.......|...+..|+|..|+..|++.+...|.- +-. -+.....|.++...|+++.|+..+++-+...|
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------~~a-----~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------PYA-----PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------TTH-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------hHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3556788999999999999999999998775520 111 13344557788899999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCC--------CCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNE--------TNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISA 283 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~--------~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~ 283 (733)
..+. ...++|.+|.+++...+ ..+..+|...|+..++-....+-..........+.+..+.--..+|.
T Consensus 74 ~~~~----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 74 NSPK----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp T-TT----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8664 45678888888766532 11145666666666665333211111111122233333444455688
Q ss_pred HHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHH
Q 004720 284 IHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAE 333 (733)
Q Consensus 284 ~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi 333 (733)
-|++.|.|.-|+..++.+.+-.++ .+..+.+++..++++.++|..+.|.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~-t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPD-TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhCChHHHH
Confidence 889999999998888777763210 1111234477788888888777443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00019 Score=59.56 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=61.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 488 CLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 488 a~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
...|++.+++++|.++++++++++| ++...+.++.++...|++++|+++++++.+..+.+++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678999999999999999999999 899999999999999999999999999999988777755544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.4e-05 Score=83.26 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+-++++..|+.++|+.|++.|.++++..| +.|-++-+++++|++.++|..|..++.+|+++|| .+..++.+.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldp-------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDP-------NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCC-------cceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence 33589999999999999999999999976 4466788999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQAL 564 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~ 564 (733)
...+..+.+-+|+..++....+.+.+|++... .++|..+...
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~-~~Ec~~~vs~ 121 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRK-IDECNKIVSE 121 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999988986655 5777764443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0018 Score=61.64 Aligned_cols=123 Identities=16% Similarity=0.053 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC----hHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN----IASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~----~~t~~~~~ 521 (733)
.....+..+++..+.+.++.-..-+|... -.......++.++...|++++|++.+++++...|+ +...+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~----ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSP----YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44555577888887777777666666442 23345566778888888888888888887776542 34566678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSN 573 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~ 573 (733)
++++..|++++|+..++.+.. ..+.+....+-..+....|+.+.|+.+++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888888887766322 345566666667777778888888777653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=69.56 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|..++..|+|++|++.+..+ + .-.+.--...+|++.+++|.|.+.++++.+.+. ++.+++...-+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------~------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------G------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------T------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc------C------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 678889999999998877654 1 113445567899999999999999999999998 899998877777
Q ss_pred HhcC--CHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 525 LQKN--DQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 525 l~~g--d~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+..| ++++|...|+.+..-.+.+|.++..-+.-.+..|+.+.|...|+.-++
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766 589999999999876666777766556667778999999988877665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00042 Score=71.01 Aligned_cols=121 Identities=12% Similarity=0.010 Sum_probs=101.1
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
.|+.-+..|||..|...|.+|+..-+ ++ -+.+...+.++...|+++.|..-|.++.++.|..|.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p--------~d------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~-- 169 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAP--------TD------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS-- 169 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCC--------CC------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--
Confidence 89999999999999999999997643 12 123344577888999999999999999999999885
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
++.|+|..++-.|+ ++.|..++..++.. .+.+ ..+..+|+.+...+|+++.|...
T Consensus 170 -----~~nNlgms~~L~gd---~~~A~~lll~a~l~---~~ad--------------~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 170 -----IANNLGMSLLLRGD---LEDAETLLLPAYLS---PAAD--------------SRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred -----hhhhHHHHHHHcCC---HHHHHHHHHHHHhC---CCCc--------------hHHHHHHHHHHhhcCChHHHHhh
Confidence 48899999999999 99999999999986 3212 12788999999999999999876
Q ss_pred HH
Q 004720 298 VR 299 (733)
Q Consensus 298 l~ 299 (733)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 54
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00086 Score=63.25 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|...++.|+|++|++.|+....-+|.++ -..+.+..++-+|.+.+++++|+..+++-++++| ++..-|..|
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45689999999999999999999999899874 3457899999999999999999999999999999 887776666
Q ss_pred HHHH
Q 004720 522 KIYL 525 (733)
Q Consensus 522 ki~l 525 (733)
.+.+
T Consensus 89 ~~gL 92 (142)
T PF13512_consen 89 MRGL 92 (142)
T ss_pred HHHH
Confidence 6655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=60.78 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC----ChHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP----NIASA 517 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp----~~~t~ 517 (733)
+.++.|..+-..|+.++|+.+|+.++..-..+ ......+..++.+|..+|++++|...++++....| +....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~----~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG----ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 45678999999999999999999999854444 36678899999999999999999999999988756 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 004720 518 FLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
.....+....|+.++|++.+-.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 4556677788999999987744
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.29 Score=57.98 Aligned_cols=320 Identities=18% Similarity=0.156 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 198 LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 198 ~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
.|+.|++-+.. .+..+. ..-+.+++.+|..++..-+. ++.|..++++++.+++++. ..+++..+
T Consensus 39 ~ai~CL~~~~~-~~~l~p--~~ea~~~l~la~iL~~eT~n--~~~Ae~~L~k~~~l~~~~~-----------~~d~k~~~ 102 (608)
T PF10345_consen 39 TAIKCLEAVLK-QFKLSP--RQEARVRLRLASILLEETEN--LDLAETYLEKAILLCERHR-----------LTDLKFRC 102 (608)
T ss_pred HHHHHHHHHhc-cCCCCH--HHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccc-----------hHHHHHHH
Confidence 46777777774 333332 34578899999998865443 9999999999999966521 25567778
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH---HHHHHHHHhcCChHHHHHHHHHhhhcc----CCchHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP---VLAMKAWLGLGRYNEAELELRGMVEIK----GIPECIW 350 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~---~lk~~il~~~g~~deAi~~l~~~l~~~----~~~~~~~ 350 (733)
-..|+.+|.+.+... |++.++...+... ..+..++.+ |+++......+++..|+..++.+.... +....+.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~-~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSE-TYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 888899999998655 8877776665321 023345544 555555555689999999998766332 2223333
Q ss_pred HhHHHHHHHhch---hhhHHHHHHHHHhhhcc------CCchHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHHHHhhhH
Q 004720 351 VSAVEAYFQAAG---TAGAETAKGVFLGLLGR------CHVSAKAAVRMAHRVAG-DEGDGVSEAAVKLRAKAVAELVSD 420 (733)
Q Consensus 351 ls~~~ly~~~~~---~~a~~~lk~~l~~ll~~------~~~~~~~a~~~l~~~l~-~~~sp~~~~~l~~ka~~l~~l~~~ 420 (733)
.++.+....... +.+.+.++.+.....+. ..|+-.....+++-+.. ..+++.. ...+...++.....
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~---~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKN---SKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHH
Confidence 333333322222 34455555442211111 11222222222222210 0222211 11222222221111
Q ss_pred HHHHH---------Hhh-----cc------hh---HHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCC-----
Q 004720 421 ERVLA---------LFV-----GD------AA---AKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLP----- 471 (733)
Q Consensus 421 e~v~~---------~~~-----g~------~~---~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~----- 471 (733)
..-.. .|. +. .. ..+...+-.+.+- .|......++.+.|.+++.+++....
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 10000 000 00 00 0022223333333 67777777888899999999884221
Q ss_pred --CCchh------------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---C-------ChHHHHHHHHHHHhc
Q 004720 472 --FDVEN------------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE---P-------NIASAFLKFKIYLQK 527 (733)
Q Consensus 472 --~~~~~------------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld---p-------~~~t~~~~~ki~l~~ 527 (733)
..... +.-...+....+.|.+-++++.+|.....++.... | .+...|+.+-.+...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 11000 01133345667788888899999999999876542 1 256677777777789
Q ss_pred CCHHHHHHHHH
Q 004720 528 NDQEGAINQIL 538 (733)
Q Consensus 528 gd~e~Al~~l~ 538 (733)
|+.+.|...|.
T Consensus 418 g~l~~A~~~y~ 428 (608)
T PF10345_consen 418 GDLEAALYQYQ 428 (608)
T ss_pred CCHHHHHHHHh
Confidence 99999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=62.86 Aligned_cols=101 Identities=16% Similarity=-0.006 Sum_probs=77.0
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN----IASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~----~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
|+..++.+.|.+. ++..+..++++|.+|...|++++|.++++++++.+|+ ....+.+..++...|++++|++.+
T Consensus 18 ~~~~~~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 18 MADLILKILPINK--KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred HHHHHHHHccccc--HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555443 2578889999999999999999999999999988762 356778999999999999999999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCCH
Q 004720 538 LAMTICLDFTTDFLSLAAHEAVACQAL 564 (733)
Q Consensus 538 ~~~~~~~~~~~~lL~la~~~a~~~~~~ 564 (733)
++.....+..+..+..-+......|..
T Consensus 96 ~~al~~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 96 HQALELNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 999988766666444434444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00026 Score=57.74 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=56.2
Q ss_pred HhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHH
Q 004720 492 LGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAA 555 (733)
Q Consensus 492 l~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~ 555 (733)
++.|++++|++.|++++..+| +....+.++.++++.|++++|.+.++++....+.+|.+..+-+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 578999999999999999999 9999999999999999999999999999988776677555543
|
... |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.23 Score=56.88 Aligned_cols=370 Identities=14% Similarity=0.142 Sum_probs=206.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004720 145 LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQY 224 (733)
Q Consensus 145 ~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~ 224 (733)
.|++.+-+..|+.|+.-+..... . +. .=++-+.-|..|+..|+.+.|...++||...... ....|+.++
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka-~-Gs------~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~---~v~dLa~vw 428 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKA-V-GS------PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK---TVEDLAEVW 428 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccC-C-CC------hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc---chHHHHHHH
Confidence 45566666777777765432110 0 00 1145566699999999999999999999977443 356799999
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHH------HHHHHHHHHHhccCcHHHHHHHH
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKF------KTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~------~~l~~La~~yl~~~~~ekAl~~l 298 (733)
.+-|.--+.+.+ ++.|.+.+++|.-+ +.... ...+.+..+.+. ++|...+..--..|-++.....|
T Consensus 429 ~~waemElrh~~---~~~Al~lm~~A~~v---P~~~~--~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 429 CAWAEMELRHEN---FEAALKLMRRATHV---PTNPE--LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHhhhcC---CCchh--hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999988888888 99999999999886 32211 011111122232 25554455445567888888888
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc--cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI--KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGL 376 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~--~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~l 376 (733)
+.+... .-..|.....-+-.+....-++++.+.+.+.|.. .|+.-++|...+.-+.+.=...-++..+.+|-..
T Consensus 501 driidL----riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 501 DRIIDL----RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHH----hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 887763 1235655544444444445578999999887733 3455666654332222211122344444444444
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCC
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWN-CASILFRSKD 455 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~ 455 (733)
|.-|.|.+...+=++--.+ .... +.+. ..+..++++. .+....-..-+|| .-.+..+.=-
T Consensus 577 L~~Cpp~~aKtiyLlYA~l----EEe~-----GLar--~amsiyerat--------~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKL----EEEH-----GLAR--HAMSIYERAT--------SAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCHHHHHHHHHHHHHH----HHHh-----hHHH--HHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHHHHhC
Confidence 4444433111110000000 0000 0000 1111122111 1101111112333 2233333334
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCChHHHHH-HHHHH-HhcCCHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-EPNIASAFL-KFKIY-LQKNDQEG 532 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-dp~~~t~~~-~~ki~-l~~gd~e~ 532 (733)
.....+.|++|++..|.... + ....+.+.--.++|+.|+|..+|.-+.++ ||...+-|- .++.. ++-|| ++
T Consensus 638 v~~TR~iYekaIe~Lp~~~~----r-~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn-ed 711 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKA----R-EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN-ED 711 (835)
T ss_pred CcccHHHHHHHHHhCChHHH----H-HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC-HH
Confidence 55667889999988775421 1 22345566677899999999999987665 666666553 44444 35677 56
Q ss_pred HHHHHHHHHhccC--CChHHHHHHHHHHHHcC
Q 004720 533 AINQILAMTICLD--FTTDFLSLAAHEAVACQ 562 (733)
Q Consensus 533 Al~~l~~~~~~~~--~~~~lL~la~~~a~~~~ 562 (733)
-++.+-+|.++.. .+.+...++.+...-++
T Consensus 712 T~keMLRikRsvqa~yn~~~~~~a~q~~~~~~ 743 (835)
T KOG2047|consen 712 TYKEMLRIKRSVQATYNTDVNSMAHQMLKINF 743 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Confidence 6666667776653 45677777766665544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00034 Score=77.38 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
..|.|..+++.|+|++|+.+|+.++++.|.+. .-.-.++|+|.||.++|++++|++++.+|+++.
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALELNPNPD----EAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34699999999999999999999999998653 222569999999999999999999999999973
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00026 Score=71.39 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=89.8
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.++.....||.|+.-..|+.|+.||.+|+-..|. ...|+-+||.+++...+++.+..+..||+++.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~--------------~~~Y~tnralchlk~~~~~~v~~dcrralql~ 74 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT--------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD 74 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCC--------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence 4567788999999999999999999999977541 02466677999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
|... ...|-+|...+..+. |++|+..|++|+++....+.
T Consensus 75 ~N~v-------k~h~flg~~~l~s~~---~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 75 PNLV-------KAHYFLGQWLLQSKG---YDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred hHHH-------HHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHhcCCC
Confidence 8744 457888999999999 99999999999999777543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.056 Score=56.52 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhH------HHHhcCCCCCHHHHHHHHHHHHHHHh
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAK------SALSKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~------~~~~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
.|+.-+-+|....+|..|-.||++.-.+.|...+...+-|..+|+-|. .....+|.+..-.-+--++.|+..-+
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 444456778888899999999999999888766665566666665443 12222331111111222444444422
Q ss_pred cCCCCcccchhhhhhh-hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHH
Q 004720 256 KGLGEARTREETTELK-GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAEL 334 (733)
Q Consensus 256 ~~~~~~~~~~~~~~~~-el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~ 334 (733)
.+..+.++ -..... +..+.++.+.|....+.|+|+.|+.-++.+.+. +...|...|.-.-++++.|+++.|++
T Consensus 126 ~Dl~g~rs--LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 126 GDLPGSRS--LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred ccCcchHH--HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 22211110 000111 234567888899999999999999888888876 56788888999999999999999999
Q ss_pred HHHHhh
Q 004720 335 ELRGMV 340 (733)
Q Consensus 335 ~l~~~l 340 (733)
.+..++
T Consensus 200 ~iSEIi 205 (459)
T KOG4340|consen 200 HISEII 205 (459)
T ss_pred HHHHHH
Confidence 876555
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00026 Score=74.41 Aligned_cols=110 Identities=20% Similarity=0.116 Sum_probs=87.0
Q ss_pred CCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHH
Q 004720 120 DVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLA 199 (733)
Q Consensus 120 ~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A 199 (733)
+++++-+.++...+.-.+.||.|++.|+|+.|+.||++++...+- + --+..+||-+|+++..|..|
T Consensus 85 ~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~---N-----------pV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 85 PVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH---N-----------PVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred CccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC---C-----------ccchhhHHHHHHHHHHHHHH
Confidence 334445666777777888999999999999999999999987651 0 12455779999999999999
Q ss_pred HHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 200 ITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 200 ~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
..++..|+.++....+. |-..|..-...|. ..+|.+.++.++++
T Consensus 151 E~DC~~AiaLd~~Y~KA-------YSRR~~AR~~Lg~---~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 151 EEDCEAAIALDKLYVKA-------YSRRMQARESLGN---NMEAKKDCETVLAL 194 (536)
T ss_pred HHhHHHHHHhhHHHHHH-------HHHHHHHHHHHhh---HHHHHHhHHHHHhh
Confidence 99999999998764443 5555666666677 88888889999998
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=75.68 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=123.6
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH-----HHHHHHccCHHHHHHHHHHHHhh
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIAR-----SRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~r-----A~~a~~~g~~~~A~~~~~rA~~l 209 (733)
.-.+.+.|.-+|++-.=-.|||||.++-.. -..| +....+.++|.+|..+++++..+
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~------------------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~ 514 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------------------ISARAQRSLALLILSNKDFSEADKHLERSLEI 514 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhh------------------hhHHHHHhhccccccchhHHHHHHHHHHHhhc
Confidence 444667777777777777788888776431 1112 22344689999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
.|-.+. .+|..|-+.++.++ +..|++.|.+...+ +|.+ +..|.+|+.+|+..+
T Consensus 515 nplq~~-------~wf~~G~~ALqlek---~q~av~aF~rcvtL---~Pd~--------------~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 515 NPLQLG-------TWFGLGCAALQLEK---EQAAVKAFHRCVTL---EPDN--------------AEAWNNLSTAYIRLK 567 (777)
T ss_pred Cccchh-------HHHhccHHHHHHhh---hHHHHHHHHHHhhc---CCCc--------------hhhhhhhhHHHHHHh
Confidence 887553 59999999999999 99999999999888 5533 338999999999999
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+-.+|..++..+++. +-.|+..+-.-+-+....|.+++|+..+.+++.
T Consensus 568 ~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999986 345666666677777888999999999987763
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.022 Score=68.87 Aligned_cols=219 Identities=15% Similarity=0.072 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC------ch
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI------PE 347 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~------~~ 347 (733)
....+..|+..|...+++++|+..++...+. .+..+..+|+.+-++.+.++++++... .++...+. .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE----HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 4568889999999999999999999988775 467788888888899999998877666 33322111 12
Q ss_pred HHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004720 348 CIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF 427 (733)
Q Consensus 348 ~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~ 427 (733)
.+|-.++. |.++. .|+..+-.++. .......+..+.++++ +.+|++..++-.-|-.+.+. .-++.+.
T Consensus 104 ~~~~~i~~-~~~~k--~Al~~LA~~Yd-----k~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~-dL~KA~~-- 170 (906)
T PRK14720 104 HICDKILL-YGENK--LALRTLAEAYA-----KLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE-DKEKAIT-- 170 (906)
T ss_pred HHHHHHHh-hhhhh--HHHHHHHHHHH-----HcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh-hHHHHHH--
Confidence 22222222 11111 11111111100 1112456777777887 67787776661111111121 1111111
Q ss_pred hcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh-hhhhHHHHHHHH------------HHHHhC
Q 004720 428 VGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN-RILRAKSFRVLC------------LCYLGL 494 (733)
Q Consensus 428 ~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~-~~~~akl~r~la------------~cyl~l 494 (733)
++-+-...++..++|..+.++..+-.+..|.+.+. -.-..++...++ .||-+.
T Consensus 171 --------------m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 171 --------------YLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred --------------HHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 12123355778889999999888877776654321 001123333444 899999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
++|++++++++.++.++| |..+.+-+...|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999 8877776666555
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.53 Score=55.37 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=113.3
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHH--HHHHhhccCCC-hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEI--VSKLDISRISD-SDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG- 212 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~--~~~~~~~~~~~-~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~- 212 (733)
..++.|.+..+++-|--|+-..-.. ..++.....++ +.+..+ |..+...|-.++|..+|.|++..+.-
T Consensus 762 nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakv--------AvLAieLgMlEeA~~lYr~ckR~DLlN 833 (1416)
T KOG3617|consen 762 NMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKV--------AVLAIELGMLEEALILYRQCKRYDLLN 833 (1416)
T ss_pred HHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678889999999998888654322 22222112222 333333 45566777777777777777754410
Q ss_pred ----------------CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHH----HH---HHhcCCCCcccchhhhh
Q 004720 213 ----------------LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEA----LE---LCEKGLGEARTREETTE 269 (733)
Q Consensus 213 ----------------~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~A----le---l~~~~~~~~~~~~~~~~ 269 (733)
..+....|-..||+.++.+-.++| .+.|+.+|+++ ++ ++.+.|... +.+.
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D---i~~AleyyEK~~~hafev~rmL~e~p~~~---e~Yv- 906 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD---IEAALEYYEKAGVHAFEVFRMLKEYPKQI---EQYV- 906 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc---HHHHHHHHHhcCChHHHHHHHHHhChHHH---HHHH-
Confidence 111222355679999998888999 88899888875 22 233332211 1110
Q ss_pred hhhcHH-HHHHHHHHHHh-ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 270 LKGLKF-KTLRFISAIHL-QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 270 ~~el~~-~~l~~La~~yl-~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
...+. +.|+--| .|+ ..|+.|.|+.+|..++. +|-..+|....|+.++|-...+.. ...
T Consensus 907 -~~~~d~~L~~WWg-qYlES~GemdaAl~~Y~~A~D------------~fs~VrI~C~qGk~~kAa~iA~es-----gd~ 967 (1416)
T KOG3617|consen 907 -RRKRDESLYSWWG-QYLESVGEMDAALSFYSSAKD------------YFSMVRIKCIQGKTDKAARIAEES-----GDK 967 (1416)
T ss_pred -HhccchHHHHHHH-HHHhcccchHHHHHHHHHhhh------------hhhheeeEeeccCchHHHHHHHhc-----ccH
Confidence 00111 1222223 454 45899999999998864 244567777788888877665421 223
Q ss_pred HHHHhHHHHHHHhch-hhhHHHHH
Q 004720 348 CIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 348 ~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
..|.-++..|...+. -+|..++.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334455566654443 34444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=68.24 Aligned_cols=97 Identities=13% Similarity=0.032 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
-.|.++...|+++.|..-|..|..+.|.+.+ .+.-+.-+..|..-+ .-.+|.+.+++|+++|| |+.+.++++.
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~-----~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLAGDNPE-----ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3899999999999999999999999987642 233444445555543 46788999999999999 9999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.+.++|++.+|+..++.|.++.+.
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988753
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.057 Score=66.32 Aligned_cols=238 Identities=18% Similarity=0.141 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 198 LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 198 ~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
+..++++|-..-.|.+. ....+.---++..++ .+.|.+..++|+..+.= +++ . =+..+
T Consensus 1442 esaeDferlvrssPNSS-------i~WI~YMaf~LelsE---iekAR~iaerAL~tIN~-------REe----e-EKLNi 1499 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSS-------ILWIRYMAFHLELSE---IEKARKIAERALKTINF-------REE----E-EKLNI 1499 (1710)
T ss_pred cCHHHHHHHHhcCCCcc-------hHHHHHHHHHhhhhh---hHHHHHHHHHHhhhCCc-------chh----H-HHHHH
Confidence 34456666665555432 234455566778888 99999999999986321 111 1 13335
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-HHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA-MKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
|..+-+.-..-|.-+...+.++++.++ -+|...|++ .++|.+.+.+++|.+.++.|+..-.....+|+..+.+
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqy------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQY------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 553333333345566777889999885 356666665 4799999999999999999998777788888888887
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
++.++. ..++..++.+.+ +.-|.. +....+.
T Consensus 1574 Ll~~ne---------------------~~aa~~lL~rAL--~~lPk~-----eHv~~Is--------------------- 1604 (1710)
T KOG1070|consen 1574 LLRQNE---------------------AEAARELLKRAL--KSLPKQ-----EHVEFIS--------------------- 1604 (1710)
T ss_pred HhcccH---------------------HHHHHHHHHHHH--hhcchh-----hhHHHHH---------------------
Confidence 765543 244455555665 344411 0111111
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCh--
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNI-- 514 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~-- 514 (733)
+-+..-|+.|+-+.+.-.|+--|.-+|.- ..+.....-.-++.|+.+.++..|+++..+.-.+
T Consensus 1605 --------kfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1605 --------KFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred --------HHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 24556789999999999999988877743 3466777777788999999999999987775433
Q ss_pred -HHHHHHHHHHHhc
Q 004720 515 -ASAFLKFKIYLQK 527 (733)
Q Consensus 515 -~t~~~~~ki~l~~ 527 (733)
.-.|-+|--|-.+
T Consensus 1670 mKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKS 1683 (1710)
T ss_pred hHHHHHHHHHHHHh
Confidence 3344444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.67 Score=55.15 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=94.8
Q ss_pred HHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTEL 270 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~ 270 (733)
+..++|.+|+..+++...-.|..+-. ....|..++..|+ +++|..+++.-... +.+ +
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a-------~vLkaLsl~r~gk---~~ea~~~Le~~~~~----~~~----D----- 76 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYA-------KVLKALSLFRLGK---GDEALKLLEALYGL----KGT----D----- 76 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHH-------HHHHHHHHHHhcC---chhHHHHHhhhccC----CCC----c-----
Confidence 36789999999999988777764421 2234667778888 88888655543332 111 0
Q ss_pred hhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc--HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchH
Q 004720 271 KGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS--LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPEC 348 (733)
Q Consensus 271 ~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~--~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~ 348 (733)
..++..|-.||-+.|++|+|..+|+.+.+ ..|+ ..+-.+.++.+-++|.+-.+...++-.+.|....
T Consensus 77 ----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~-------~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 77 ----DLTLQFLQNVYRDLGKLDEAVHLYERANQ-------KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred ----hHHHHHHHHHHHHHhhhhHHHHHHHHHHh-------hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 12788889999999999999999999987 3455 2244455677778887777666666666665544
Q ss_pred HHHhHHHHHHHhch
Q 004720 349 IWVSAVEAYFQAAG 362 (733)
Q Consensus 349 ~~ls~~~ly~~~~~ 362 (733)
.+-+...+++....
T Consensus 146 yfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 146 YFWSVISLILQSIF 159 (932)
T ss_pred hHHHHHHHHHHhcc
Confidence 44477777776544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.012 Score=65.30 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|.++++.+++++|++.+++++..+|.. .-+..+++..|++.|++++|+.++++...-+| ++....++++.|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay 418 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY 418 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence 7888899999999999999999887743 34678889999999999999999999988899 888899999999
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 004720 525 LQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~ 543 (733)
...||..+|...+.....+
T Consensus 419 ~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 419 AELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHhCchHHHHHHHHHHHHh
Confidence 9999988888777554444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.098 Score=61.10 Aligned_cols=227 Identities=13% Similarity=0.169 Sum_probs=141.5
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHh
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI-ASAFLKFKIYLQ 526 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~-~t~~~~~ki~l~ 526 (733)
...+-|-.++|...|++.-.++- +-.-|...|.+++|.++.+ ..|. +. .|+|..++-.-.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DL---------------lNKlyQs~g~w~eA~eiAE---~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDL---------------LNKLYQSQGMWSEAFEIAE---TKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHhcccHHHHHHHHh---hccceehhhhHHHHHHHHHh
Confidence 34566778888889888765422 2234667889998877764 4455 54 455556666667
Q ss_pred cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCCh
Q 004720 527 KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNE 606 (733)
Q Consensus 527 ~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~ 606 (733)
.+|.+.|+++|++...-. + ++. +...+ +. .+++.-.+.. .| + +++|.--+++ ...|+.
T Consensus 871 r~Di~~AleyyEK~~~ha-f--ev~----rmL~e--~p----~~~e~Yv~~~-~d---~----~L~~WWgqYl-ES~Gem 928 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHA-F--EVF----RMLKE--YP----KQIEQYVRRK-RD---E----SLYSWWGQYL-ESVGEM 928 (1416)
T ss_pred hccHHHHHHHHHhcCChH-H--HHH----HHHHh--Ch----HHHHHHHHhc-cc---h----HHHHHHHHHH-hcccch
Confidence 899999999997653221 1 111 11111 11 2333333422 22 2 6666665554 335788
Q ss_pred hHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHH------hhhhhhhhhcccccchhhHHHHHHHHHHHHcc---cc
Q 004720 607 SEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLA------VMSWNFGTNCGKEKKYELCMEFLRLASEFYGI---RV 677 (733)
Q Consensus 607 ~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~------~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l---~p 677 (733)
|..+.+|..|....+.....|+.|+- +++.=++ ..+|-+|-++.+.++...+..||.-|.-|... |-
T Consensus 929 daAl~~Y~~A~D~fs~VrI~C~qGk~----~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 929 DAALSFYSSAKDYFSMVRIKCIQGKT----DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred HHHHHHHHHhhhhhhheeeEeeccCc----hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988877666888753 2333232 24789999999999999999999998887664 44
Q ss_pred CCchhhhHHHHHHHHHHH-----HHHHHHHHhhhccccchHHHHHHHHHHHhhccc
Q 004720 678 DGQVEENSITVCKSLILT-----VSAMIASENQKQIALMNNEVKQALELLDRAGKV 728 (733)
Q Consensus 678 ~~~~~~~~~~~c~~ll~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (733)
.+....-.-..| +|+ |+||.--|.+ --+.++||++|-|||-+
T Consensus 1005 End~~d~L~nla---l~s~~~d~v~aArYyEe~------g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 1005 ENDMKDRLANLA---LMSGGSDLVSAARYYEEL------GGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred hcCHHHHHHHHH---hhcCchhHHHHHHHHHHc------chhhhHHHHHHHhhcch
Confidence 444433344444 332 1222222222 12589999999999964
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0037 Score=64.82 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch---HHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI---ASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~---~t~~ 518 (733)
+++.+..+++.|+|..|.+-|..-+.-||.+. ..+..++=|+.|+...|+|+.|..+|..+.+--| ++ .+.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 67899999999999999999999999999873 5667899999999999999999999999988877 54 5566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
-+..+....|+.|+|...|..+.+--+.++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 667777789999999999998886655444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0042 Score=71.67 Aligned_cols=138 Identities=12% Similarity=-0.059 Sum_probs=94.9
Q ss_pred HHHHHHHHccC---HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh--cCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 185 ARSRTAWEVLE---QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS--KNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 185 ~rA~~a~~~g~---~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~--~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
.|+..++..++ +..|+.++++|++++|+++..+..++.++..... +.. .++ ...+....++++.+ ...
T Consensus 344 lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~-~~~~~~~~---l~~a~~~~~~a~al---~~~ 416 (517)
T PRK10153 344 YQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS-QQPLDEKQ---LAALSTELDNIVAL---PEL 416 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-cCCccHHH---HHHHHHHHHHhhhc---ccC
Confidence 56666665544 7799999999999999988777766665543211 110 111 34444445554443 111
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
.. ...++..++..+...|++++|...++.+... ++ ...++++.++++...|++++|+..+.+.
T Consensus 417 ~~------------~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 417 NV------------LPRIYEILAVQALVKGKTDEAYQAINKAIDL----EM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cC------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 10 1236777788888889999999999999985 23 3456699999999999999999999988
Q ss_pred h-hccCCc
Q 004720 340 V-EIKGIP 346 (733)
Q Consensus 340 l-~~~~~~ 346 (733)
+ .++..+
T Consensus 480 ~~L~P~~p 487 (517)
T PRK10153 480 FNLRPGEN 487 (517)
T ss_pred HhcCCCCc
Confidence 8 444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.008 Score=66.57 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
+..+...|..|++++|...+..-+.-.|.| .-..-..+..+++.|+.++|.+.+++++.++| ++.-.+....
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDN-------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 347788899999999999999976766655 34556778899999999999999999999999 7899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.+++.|+.++|+..++......+.+|+.-.+-++..-+.|+...+..|.-.-..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999998888998888878888888998888766644333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0086 Score=61.25 Aligned_cols=157 Identities=13% Similarity=0.034 Sum_probs=105.9
Q ss_pred HHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHH
Q 004720 141 VWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSL 220 (733)
Q Consensus 141 ~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~L 220 (733)
+.++.|+.+.|-.|+...-+-.|.- .++....|-..=..|++++|+++|++.++-+|.+.-.+++.
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S--------------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGS--------------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCC--------------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 4567889999999997665444320 12222223334478999999999999999888755433333
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
..+.- .+|+ --+|++-+..=++.+-.+ . ..|+.|+..|+..++|++|..|++.
T Consensus 127 lAilk-------a~GK---~l~aIk~ln~YL~~F~~D---~--------------EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 127 LAILK-------AQGK---NLEAIKELNEYLDKFMND---Q--------------EAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHH-------HcCC---cHHHHHHHHHHHHHhcCc---H--------------HHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 33333 4566 567777666666653332 1 2899999999999999999999998
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcC---ChHHHHHHHHHhhhc
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLG---RYNEAELELRGMVEI 342 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g---~~deAi~~l~~~l~~ 342 (733)
+.=+ .|..|-..--.+++++..| ++.-+.+++.+.+..
T Consensus 180 ~ll~----~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLI----QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8775 3455554444556666665 456788888777743
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=46.31 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN 513 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~ 513 (733)
|+++.++|.||..+|++++|+++|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 578999999999999999999999999999993
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.015 Score=61.36 Aligned_cols=101 Identities=12% Similarity=0.006 Sum_probs=84.0
Q ss_pred HHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---ChHHHH
Q 004720 481 AKSFRVLCLCY-LGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDF---TTDFLS 552 (733)
Q Consensus 481 akl~r~la~cy-l~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~---~~~lL~ 552 (733)
.+..+..+..+ ++.|+|++|++.|++.++..| + +..+|.+..+|...|++++|+..++++.+..+. .++.+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35567777775 667999999999999999999 5 468899999999999999999999999976554 456666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 553 LAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 553 la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..+....+.|+.+.|...++.+++.++.+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 55566778899999999999999977654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.16 Score=52.64 Aligned_cols=124 Identities=11% Similarity=0.055 Sum_probs=93.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH--H
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF--K 522 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~--k 522 (733)
.|.++.+.|+|++|.+.......+. +.---..|++++..+|-|+..++++.++|. .+.+++--. +
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE------------~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~ 181 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLE------------AAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVK 181 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 6788899999999999887743221 122235789999999999999999999998 788887644 4
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
++.-.+..+.|.-.|+.|..-.+-+|.++.=-+.-++..++.+.|...|+..|++...+
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 44445567889988988876333366655544566677889999999999888866555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=70.86 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=62.6
Q ss_pred hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 477 RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI---ASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 477 ~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~---~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
.++.+..+.|++..|.++|+|++|+..|++|++++| +. .++|++.-+|...|+.++|++++++...+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 378899999999999999999999999999999999 55 45899999999999999999999999886
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.32 Score=55.73 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-hHHHH
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-IASAF 518 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-~~t~~ 518 (733)
..+|..|..+...|+.++|+++|+.++.-.. .. ++-..-+++-++.||.-+++|++|.+++.+..+.+. + ....|
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~-~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQS--EW-KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hH-HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 4567799999999999999999999884222 11 244566799999999999999999999999988876 4 44556
Q ss_pred HHHHHHHhcCCH
Q 004720 519 LKFKIYLQKNDQ 530 (733)
Q Consensus 519 ~~~ki~l~~gd~ 530 (733)
..+-++...|+.
T Consensus 345 ~~a~c~~~l~~~ 356 (468)
T PF10300_consen 345 LAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhhccc
Confidence 677888888877
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.11 Score=53.75 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=66.5
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCC---C-CCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNE---T-NSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~---~-~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
-+.-.|+|+.++....+...-. +.+....++++.|..+|.....-.. + .+.-.|++.+...++. +...+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~----e~~~~~- 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLEL----ESNKKS- 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhC----cchhHH-
Confidence 4556788887777766665332 3333345556666655553222211 0 1133444444443332 111100
Q ss_pred hhhhhhhh------cH-HHHHHHH-HHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHH
Q 004720 265 EETTELKG------LK-FKTLRFI-SAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELEL 336 (733)
Q Consensus 265 ~~~~~~~e------l~-~~~l~~L-a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l 336 (733)
....+.+ .. -.+++.+ +.+|+.-++|+.|++.+..... ..+.-++..|+++..+.|-|++.+
T Consensus 91 -~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 91 -ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred -HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 0133333 4456666777777776665322 234466777777777777777777
Q ss_pred HHhh
Q 004720 337 RGMV 340 (733)
Q Consensus 337 ~~~l 340 (733)
+.|.
T Consensus 161 k~mq 164 (299)
T KOG3081|consen 161 KKMQ 164 (299)
T ss_pred HHHH
Confidence 6665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.24 Score=51.30 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=115.8
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+|+-|...+..|+ +++|++.|+....- .|..+ ..-+++..++-++.+.++|+.|+..++.-
T Consensus 35 ~~LY~~g~~~L~~gn---~~~A~~~fe~l~~~---~p~s~-----------~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 35 SELYNEGLTELQKGN---YEEAIKYFEALDSR---HPFSP-----------YSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHc---CCCCc-----------ccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 469999999999999 99999999876643 44322 22347788899999999999999999887
Q ss_pred HccCCCCCCCCCcHH---HHHHHHHHhc-CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 302 REGSFDGGDHHASLP---VLAMKAWLGL-GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~---~lk~~il~~~-g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
... .+.||.+- |+++.++... .+.+.--... ..|+..++.+ +
T Consensus 98 i~l----yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~--------------------------~~A~~~f~~~----i 143 (254)
T COG4105 98 IRL----YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAA--------------------------RAAFAAFKEL----V 143 (254)
T ss_pred HHh----CCCCCChhHHHHHHHHHHhccCCccccCHHHH--------------------------HHHHHHHHHH----H
Confidence 775 35677643 6666553332 1111000000 1122222211 2
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
.+..++ +.-+++. .|...++.. +.|++. .-|.-+.+.|.|-
T Consensus 144 ~ryPnS-----------------~Ya~dA~-~~i~~~~d~---------LA~~Em------------~IaryY~kr~~~~ 184 (254)
T COG4105 144 QRYPNS-----------------RYAPDAK-ARIVKLNDA---------LAGHEM------------AIARYYLKRGAYV 184 (254)
T ss_pred HHCCCC-----------------cchhhHH-HHHHHHHHH---------HHHHHH------------HHHHHHHHhcChH
Confidence 223322 1111111 111111111 111111 1578889999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYIT 505 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~ 505 (733)
-|+.-++..++-+|.-. -.-+.+..+...|..+|-.++|...-.
T Consensus 185 AA~nR~~~v~e~y~~t~----~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 185 AAINRFEEVLENYPDTS----AVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHHhcccccc----chHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999998776442 334567788889999998888876543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.032 Score=58.71 Aligned_cols=113 Identities=19% Similarity=0.084 Sum_probs=93.1
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhc---CCHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQK---NDQEGAINQI 537 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~---gd~e~Al~~l 537 (733)
-.+..|.-+|.|. +-.-.||.+|+.+|+++.|...|.+|.+++| ++........+.... .+..+|.+.+
T Consensus 144 ~Le~~L~~nP~d~-------egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 144 RLETHLQQNPGDA-------EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHhCCCCc-------hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344455556554 4568899999999999999999999999999 776666666655543 4568999999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 538 LAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 538 ~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+++.+....++.-+++-+..+++.|+...|+.+.+.|++..+.+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999988899888888899999999999999999999977665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=54.03 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=78.8
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
.+.|+.+..+-..|+ .++|+.+|+++++. +.. .+.+...+..++.+|-..|++++|+..++..
T Consensus 2 ~~~~~~A~a~d~~G~---~~~Ai~~Y~~Al~~---gL~-----------~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 2 RALYELAWAHDSLGR---EEEAIPLYRRALAA---GLS-----------GADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred chHHHHHHHHHhcCC---HHHHHHHHHHHHHc---CCC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 367899999999999 99999999999986 331 1124458889999999999999999999888
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
....++ .+.++....+..-++...|++++|+..+...+.
T Consensus 65 ~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 65 LEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 774210 011333446667799999999999999876653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.017 Score=66.64 Aligned_cols=96 Identities=17% Similarity=0.054 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHH
Q 004720 455 DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 455 ~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al 534 (733)
+...+.+....++.... + +..+.++..++..+...|++++|..++++|+.++|+...+.++.+++...|+.++|+
T Consensus 399 ~l~~a~~~~~~a~al~~-~----~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 399 QLAALSTELDNIVALPE-L----NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred HHHHHHHHHHHhhhccc-C----cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555666554311 2 123468899999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHH
Q 004720 535 NQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.|++...+.+..|+ ..+|=.
T Consensus 474 ~~~~~A~~L~P~~pt-~~~~~~ 494 (517)
T PRK10153 474 DAYSTAFNLRPGENT-LYWIEN 494 (517)
T ss_pred HHHHHHHhcCCCCch-HHHHHh
Confidence 999999999888786 555533
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0079 Score=58.13 Aligned_cols=98 Identities=9% Similarity=-0.028 Sum_probs=83.3
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
-+..|..|-..+..|+ +++|.+.|+-..-+ ++.+. +.+..||.|+-..++|++|+.+|.+
T Consensus 37 le~iY~~Ay~~y~~Gk---~~eA~~~F~~L~~~---d~~n~--------------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 37 MDGLYAHAYEFYNQGR---LDEAETFFRFLCIY---DFYNP--------------DYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CcCcH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999 99999999887776 55332 2688899999999999999999998
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
+-.. ...+|...|-.+.|++..|+.++|...+...+.+
T Consensus 97 A~~l----~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 97 AFTL----LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHc----ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 8775 4678888899999999999999999998877653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.032 Score=61.99 Aligned_cols=115 Identities=19% Similarity=0.081 Sum_probs=84.5
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCC
Q 004720 451 FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND 529 (733)
Q Consensus 451 ~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd 529 (733)
-..++|+.|+++|+.-..-+|. ....++.+|+..++-.+|+..++++++..| +.......++.++.+++
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE----------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 4457788888888886665542 224477777788888888888888888888 66666667777888888
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004720 530 QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLL 575 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll 575 (733)
++.|++..++...+.+++.+.-..-+....+.|+.+.|..+|+.+=
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888877666544445677777888888887776443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=54.15 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=79.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHH----HHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASA----FLK 520 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~----~~~ 520 (733)
+|...-+.|+.+.|++.|.+++...| .++..|.|++.+|--.|+.++|.+.+++|+++.- ...|. .-+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P-------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAP-------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcc-------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 78888999999999999999999877 4567899999999999999999999999999954 33332 247
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.-+|-..|+-|.|...++....+..
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCC
Confidence 8888899999999999988877643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=65.27 Aligned_cols=88 Identities=25% Similarity=0.198 Sum_probs=73.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
|.++...++-.+|+..+.+++...|.. +.++..-+..++.+++ ++.|+...++|.++ .|
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p~d-------~~LL~~Qa~fLl~k~~---~~lAL~iAk~av~l---sP-------- 265 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENPQD-------SELLNLQAEFLLSKKK---YELALEIAKKAVEL---SP-------- 265 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHh---Cc--------
Confidence 677778899999999999999777765 3456667888889999 99999999999998 44
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
....+|..|+.+|...|+|+.|+-.++-+
T Consensus 266 ------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 266 ------SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 22459999999999999999999777644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0025 Score=44.34 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
|++++.+|.+|.++|++++|+++++++++++|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46889999999999999999999999999999
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.62 Score=53.99 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEA 558 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a 558 (733)
...+.|--.+.-|.++|+|+.|.+.|.++.... .....|.+.|.++.|.+.-+....-.+ ...+...-+++-
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~-------dai~my~k~~kw~da~kla~e~~~~e~-t~~~yiakaedl 834 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEADLFK-------DAIDMYGKAGKWEDAFKLAEECHGPEA-TISLYIAKAEDL 834 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcchhH-------HHHHHHhccccHHHHHHHHHHhcCchh-HHHHHHHhHHhH
Confidence 445667778889999999999999998874421 124456778888888765543322111 112222234555
Q ss_pred HHcCCHHHHH
Q 004720 559 VACQALSVAV 568 (733)
Q Consensus 559 ~~~~~~~~a~ 568 (733)
.+.|....|.
T Consensus 835 dehgkf~eae 844 (1636)
T KOG3616|consen 835 DEHGKFAEAE 844 (1636)
T ss_pred Hhhcchhhhh
Confidence 5566666664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.17 Score=52.35 Aligned_cols=201 Identities=16% Similarity=0.080 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 128 AIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 128 ~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
-...+...+..|..-++.||+..|+..|++...--+ .++-.+ ..++..+-++.+.|+++.|+.+.+|=.
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p------~s~~~~-----qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHP------FSPYSE-----QAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCcccH-----HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 355789999999999999999999999976553221 111112 234445668889999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHHHHhcCCC-CC-HHHHHHHHHHHHHHHhcCCCCcccchhh----hhhhhcHHHHHHHH
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKSALSKNET-NS-LNDALKLMNEALELCEKGLGEARTREET----TELKGLKFKTLRFI 281 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~~~~~~~~-~~-~e~A~~~l~~Alel~~~~~~~~~~~~~~----~~~~el~~~~l~~L 281 (733)
.+.|+.|+ ..-++|-.|.+++..-+. +- ..-+...+...-+++.+=| +.++.+.. .......+.-=..+
T Consensus 99 ~lyP~~~n----~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP-nS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 99 RLYPTHPN----ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP-NSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred HhCCCCCC----hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC-CCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 99998775 556888899987766331 00 2223333333333333322 22222210 00011112223345
Q ss_pred HHHHhccCcHHHHHHHHHHHHccCCCCCCCC-CcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 282 SAIHLQKGEYESVIKCVRVLREGSFDGGDHH-ASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 282 a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~-p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
++-|++.|.+.-|+.-++.+.+..+ ...+ ..++....+++...|-.++|.....-+-.|.+.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~--~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYP--DTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 7778889999888888777766321 1111 1244777788888898888877754333555444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.033 Score=62.04 Aligned_cols=164 Identities=14% Similarity=0.089 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHccC---HHHHHHHHHHHH---hhhhcCchhHHHHHHHHHHH---hHHHHhcCCCCCHHHHHHHHHHHH
Q 004720 181 DINIARSRTAWEVLE---QNLAITLLNRAK---CLLFGLFEHYKSLANQYLTF---AKSALSKNETNSLNDALKLMNEAL 251 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~---~~~A~~~~~rA~---~l~~~~~~~~~~La~~~~~~---G~~~~~~~~~~~~e~A~~~l~~Al 251 (733)
+-++.|+..-+..+. .+.|..++.||. +++|.....+..+|..++.. |..- ...+ ..+|...-++|.
T Consensus 256 ~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~---~~~a~~~A~rAv 331 (458)
T PRK11906 256 SDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELA---AQKALELLDYVS 331 (458)
T ss_pred hHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHH---HHHHHHHHHHHH
Confidence 334566666654444 448999999999 88888777777777766644 2211 2333 788888999999
Q ss_pred HHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHH
Q 004720 252 ELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNE 331 (733)
Q Consensus 252 el~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~de 331 (733)
++ ++.+. .++..+|.++.-.++++.|...++.+... ++..+.+++..+-++.-.|+.++
T Consensus 332 el---d~~Da--------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 332 DI---TTVDG--------------KILAIMGLITGLSGQAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred hc---CCCCH--------------HHHHHHHHHHHhhcchhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCCHHH
Confidence 98 65443 27778899888888899999999999986 57888888999999999999999
Q ss_pred HHHHHHHhhhccCCchH--HHHhHHHHHHHhchhhhHHHH
Q 004720 332 AELELRGMVEIKGIPEC--IWVSAVEAYFQAAGTAGAETA 369 (733)
Q Consensus 332 Ai~~l~~~l~~~~~~~~--~~ls~~~ly~~~~~~~a~~~l 369 (733)
|+..+.+.++..|.... +..-.+.+|..+.-+.++..+
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 99999998855543322 222234456655444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.091 Score=48.70 Aligned_cols=109 Identities=16% Similarity=0.045 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 004720 125 PSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLN 204 (733)
Q Consensus 125 ~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~ 204 (733)
+...++....--..|....+.|+++.|++-|.+|+.++|. | -..|-+||-++--+|+-++|+.+++
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----r----------aSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE----R----------ASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc----c----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence 4555656555566789999999999999999999999873 1 1345567888889999999999999
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 205 RAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 205 rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
||+++.-.. ....-..+.+.|..|-..|+ .+.|..-|+.|-++
T Consensus 102 ~AleLag~~---trtacqa~vQRg~lyRl~g~---dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 102 KALELAGDQ---TRTACQAFVQRGLLYRLLGN---DDAARADFEAAAQL 144 (175)
T ss_pred HHHHhcCcc---chHHHHHHHHHHHHHHHhCc---hHHHHHhHHHHHHh
Confidence 999986532 23334456788999999999 89999999999998
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.59 Score=47.64 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=74.1
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch------HHH
Q 004720 446 CASILFRS-KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI------ASA 517 (733)
Q Consensus 446 ~g~~~~k~-~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~------~t~ 517 (733)
.|..+... .+++.||..|+.+-+++..++.+ ..--|++.+-+...-.+++|.+|+.+|++..+..- +. .-+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 56677666 89999999999999988866543 56678899999999999999999999998655532 22 334
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 518 FL-KFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 518 ~~-~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
|+ ...+++-..|.-.+-..+++.....+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 44 35566666787777777777777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.23 Score=55.53 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+|..|....-.++++.|+.||+.|+.+.| +.|..++..+....-.|+.++|.+.+++|++++| -.....+..
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-------n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHST-------DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCC-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 44577777777889999999999998866 5577888899999999999999999999999999 454444433
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 004720 522 KI--YLQKNDQEGAINQILA 539 (733)
Q Consensus 522 ki--~l~~gd~e~Al~~l~~ 539 (733)
-+ |. ..-.+.|+..|-+
T Consensus 414 ~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHc-CCchhhhHHHHhh
Confidence 33 32 3445667766643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.1 Score=53.26 Aligned_cols=185 Identities=22% Similarity=0.182 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
-..++++-+++++|-..++|+.|-.|+.||++..+. +|+-=...+ -+-..+-.+-....+.++..+++||..
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn---nrslfhAAK-----ayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN---NRSLFHAAK-----AYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---cccHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345678889999999999999999999999987762 111001111 111112233367888899999999998
Q ss_pred hhhc--CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 209 LLFG--LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 209 l~~~--~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
+... +|+ .|..-...+-..+...+ .++|+.+|++++.+++.+.... +-...+...+++|.
T Consensus 100 lY~E~Gspd----tAAmaleKAak~lenv~---Pd~AlqlYqralavve~~dr~~-----------ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 100 LYVECGSPD----TAAMALEKAAKALENVK---PDDALQLYQRALAVVEEDDRDQ-----------MAFELYGKCSRVLV 161 (308)
T ss_pred HHHHhCCcc----hHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHhccchHH-----------HHHHHHHHhhhHhh
Confidence 8654 443 22233333334456666 8999999999999977653211 22335666777888
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCCcH---HHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHASL---PVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p~~---~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
....|++|-..+...-.... .-+.-|+. ..-.+-+++...+|-.|.+.++..-
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~-~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAAD-KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHH-HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 88888877644432211100 01122232 1233344455568888888887543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.072 Score=50.44 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=74.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCC-----ch-h---------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFD-----VE-N---------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~-----~~-~---------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.|......++.+.+++.+..++.++..+ .. . +.....+...++..+...|++++|...+.+++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 4556667888999999999988765311 00 1 1234456677888899999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
|| +-..+..+.+++...|+..+|++.|+++....
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 99 88888899999999999999999999987654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.45 Score=48.81 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=71.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH----HhhCC-C-hHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA----EKLEP-N-IASAFL 519 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A----~~ldp-~-~~t~~~ 519 (733)
++....+..+-++|+++|+.++.+...+..+ ..--.+++..+..+++++.|++|-..+.+- .+++. + +-..+.
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence 5666778899999999999999876655433 356678999999999999999998888763 34443 2 211122
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 520 -KFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 520 -~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.--+|+-.+|+..|-.|++.=.+.++|
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 344555667999999988776555554
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.025 Score=62.54 Aligned_cols=87 Identities=15% Similarity=0.029 Sum_probs=66.9
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHhhc-cCC---CC-------chhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 440 HAVLWN-CASILFRSKDYEASAEMFEKSML-YLP---FD-------VENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 440 ~~llW~-~g~~~~k~~~y~~A~~~y~~aL~-~~~---~~-------~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
..+.|| .|.++|..+.|..++.+|.+||. +.. .| .....-...+.+|.+..|+..|..-.|.+.+.+|
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 346777 99999999999999999999995 221 11 1111234578999999999999999999999999
Q ss_pred HhhCC-ChHHHHHHHHHHHh
Q 004720 508 EKLEP-NIASAFLKFKIYLQ 526 (733)
Q Consensus 508 ~~ldp-~~~t~~~~~ki~l~ 526 (733)
.+.=- +|...+.++..-+.
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 87744 77777777766553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.25 E-value=3.8 Score=49.13 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=104.3
Q ss_pred HHHHHHhhhHHhccCCcchHHHH------HHHHHHHHHHHh---hccCCCh----------HHHHH-HHHHHHHHHHHHH
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGC------FEKATEIVSKLD---ISRISDS----------DERKL-LLDINIARSRTAW 191 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~------lekA~e~~~~~~---~~~~~~~----------~e~~~-~l~~l~~rA~~a~ 191 (733)
-.++..+..-|...|-+..|+.. ++.|.++++... +..+.-. .+.-. .-.+.+.+|....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~ 426 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA 426 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Confidence 45566666677777777766644 455555555311 1110000 00000 0135556788888
Q ss_pred HccCHHHHHHHHHHHHhhhhc--CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFG--LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTE 269 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~--~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~ 269 (733)
.+.++.+|..+++++....+. .+.....++..---.|.....+++ .+.|.+..+.+++.+.++.
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~---~e~a~~lar~al~~L~~~~----------- 492 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD---PEEAEDLARLALVQLPEAA----------- 492 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhccccc-----------
Confidence 999999999999999876554 222233444445556888999999 9999999999999854432
Q ss_pred hhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 270 LKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 270 ~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
.-.+..++..++.+..-.|+|++|+.++..+++.
T Consensus 493 -~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 493 -YRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred -chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 1134568889999999999999999998877764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.66 Score=46.80 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=73.6
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
.=|.+++..|+-+-+.|= -.-|.-.|.+++.+ .|. ...++..||.-+...|+||.|.+.+
T Consensus 63 eRA~l~fERGvlYDSlGL---~~LAR~DftQaLai---~P~--------------m~~vfNyLG~Yl~~a~~fdaa~eaF 122 (297)
T COG4785 63 ERAQLLFERGVLYDSLGL---RALARNDFSQALAI---RPD--------------MPEVFNYLGIYLTQAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHHHhcchhhhhhH---HHHHhhhhhhhhhc---CCC--------------cHHHHHHHHHHHHhcccchHHHHHh
Confidence 345566777777777776 77777778888898 432 2348889998889999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+...+. .+..-.+...++-.++..|+|.=|.+++...-.
T Consensus 123 ds~~EL----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 123 DSVLEL----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhHhcc----CCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 988774 222223446777788888999999999876653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.046 Score=58.53 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=110.6
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
...-.|++++..+.|+.+.+.|++|+.+-.. - +|.-.-+.+.+.-...+-...|+++|..+..+|.++....
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~----~----~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHN----N----DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc----c----CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 3444899999999999999999999886431 0 0111113455556677778899999999999999986542
Q ss_pred c---hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 214 F---EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 214 ~---~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
. -..++=+..+|.+++.+-.+|. ..+|-.+.++|.++--. .+ ++.+.+++++.+|.+|-..|+
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~-~G----------dra~~arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQ-HG----------DRALQARCLLCFADIYRSRGD 261 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHH-hC----------ChHHHHHHHHHHHHHHHhccc
Confidence 2 1235566778999999999999 99999999999887222 11 155678899999999999999
Q ss_pred HHHHHHHHHHHHc
Q 004720 291 YESVIKCVRVLRE 303 (733)
Q Consensus 291 ~ekAl~~l~~a~~ 303 (733)
.|.|..-|+.+-.
T Consensus 262 ~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 262 LERAFRRYEQAMG 274 (518)
T ss_pred HhHHHHHHHHHHH
Confidence 9998877776643
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0034 Score=66.58 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
++..++..|++++|++.|..++...| ..+.+|-+++.+|++|++...|+..|..|+.++| +...+-.+-...
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp-------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNP-------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCC-------chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence 67778999999999999999998865 5577899999999999999999999999999999 677777888888
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
..+|++++|..++....++ |.+++
T Consensus 193 rllg~~e~aa~dl~~a~kl-d~dE~ 216 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKL-DYDEA 216 (377)
T ss_pred HHhhchHHHHHHHHHHHhc-cccHH
Confidence 9999999999999888876 44443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.01 Score=41.26 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
|+++..+|.+|..+|++++|.++++++++++|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46889999999999999999999999999987
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.1 Score=53.33 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhc--cCCCh-HHHH-HHHHHHHHHHHHHHHccCHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDIS--RISDS-DERK-LLLDINIARSRTAWEVLEQNLAIT 201 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~--~~~~~-~e~~-~~l~~l~~rA~~a~~~g~~~~A~~ 201 (733)
..-.+....-..-||.+++.|+|..|..+|..|+..+..+... +.+++ -+.+ ...-++++-+-+.+..|+|-++++
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 4456667777889999999999999999999999988865543 33222 1111 123366677889999999999999
Q ss_pred HHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 202 LLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 202 ~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
..+.++...|++.+ +||..|+++...=+ ..+|-..|++++++
T Consensus 252 h~seiL~~~~~nvK-------A~frRakAhaa~Wn---~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 252 HCSEILRHHPGNVK-------AYFRRAKAHAAVWN---EAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHhcCCchHH-------HHHHHHHHHHhhcC---HHHHHHHHHHHHhc
Confidence 99999999888765 49999999998888 89999999999998
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.6 Score=54.46 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH--H
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK--F 521 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~--~ 521 (733)
....+|.+.++|++|.++|+.-++-+. ...++++..+...++.++-+.|.+.+.+|+++-| .-+..+.. +
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 357788999999999999999876333 2357899999999999999999999999999999 66666653 4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.+-.+.||-|++...++.+....+...|+-..-+..-++.|++..++..|+.++.+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 55556899999999999999888888898887778888899999999999999983
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.95 E-value=3.8 Score=45.90 Aligned_cols=374 Identities=13% Similarity=0.072 Sum_probs=207.8
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
..++++.|-.+|++|++... + . ..+-+--|..-|+..+..-|....+||..+.|+-.+ .
T Consensus 85 sq~e~~RARSv~ERALdvd~-----r-----~----itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-------l 143 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-----R-----N----ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-------L 143 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-----c-----c----chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-------H
Confidence 45555666677777665431 1 0 122233367888888899999999999999987321 1
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.|-.--.--..|+ ...|.+.|++=++. .|.. ++|....+--+..++.++|...|+.-.-
T Consensus 144 WyKY~ymEE~LgN---i~gaRqiferW~~w---~P~e---------------qaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 144 WYKYIYMEEMLGN---IAGARQIFERWMEW---EPDE---------------QAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHcC---CCcH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 2211111113456 77778778777766 4311 2565445555556677788888776643
Q ss_pred cCCCCCCCCCcHH--HHHHHHHHhcCChHHHHHHHHHhh---hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhc
Q 004720 304 GSFDGGDHHASLP--VLAMKAWLGLGRYNEAELELRGMV---EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLG 378 (733)
Q Consensus 304 ~~~~~~~~~p~~~--~lk~~il~~~g~~deAi~~l~~~l---~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~ 378 (733)
.||.+. .--++.-.+.|...-+...+...+ .+....+.++++.+.+=... +-++-.+.++...++
T Consensus 203 -------~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q---kE~ERar~iykyAld 272 (677)
T KOG1915|consen 203 -------VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ---KEYERARFIYKYALD 272 (677)
T ss_pred -------ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 467655 333455556666555555544333 22223334443333322111 112222222222233
Q ss_pred cCCch-HH-HHHHHH------------------------HHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh----
Q 004720 379 RCHVS-AK-AAVRMA------------------------HRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV---- 428 (733)
Q Consensus 379 ~~~~~-~~-~a~~~l------------------------~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~---- 428 (733)
+-..+ .. .....+ +..+ ..+|.+-+.|..-..+.......+.|.+.+.
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v--~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV--SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH--HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 32221 01 111100 0111 2334444444333333333222233333322
Q ss_pred -cchhHHHhhHHH-HHHHH-HH-HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 429 -GDAAAKERIAMH-AVLWN-CA-SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 429 -g~~~~~~~~~~~-~llW~-~g-~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
-++.....-|-- ..||- .+ -.-...+|.+.+.+.|+.+|++.|... -..||+....|.--+...++..|..++
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk---FtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK---FTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc---chHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 122222222322 23443 22 233678999999999999999999664 589999999999999999999999999
Q ss_pred HHHHhhCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 505 TEAEKLEP--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 505 ~~A~~ldp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
-.|+-..| -++.-|.-+. ++.+++|.....|+++....+.+-..-+--+.+-...|+.+-+...++.-++
T Consensus 428 G~AIG~cPK~KlFk~YIelE--lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 428 GNAIGKCPKDKLFKGYIELE--LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHhccCCchhHHHHHHHHH--HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99998888 3444454444 4567999999999999876443222111122333446778877766666655
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.32 Score=49.50 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=92.9
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+..+.++|+.|-=.++.+.|..+|-+|.+.--... +..+...+.+- |.-+.+.++.++|+.++++++++
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~---skhDaat~Yve------A~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG---SKHDAATTYVE------AANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC---CchhHHHHHHH------HHHHhhccChHHHHHHHHHHHHH
Confidence 3457788888888888888999999999988643211 10121111111 22333677999999999999998
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhc-CCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSK-NETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~-~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
..+-... ..-|.-...+|..+-.. .+ +++|+.+|++|-+......... +.. +++.-.|.--...
T Consensus 103 yt~~Grf-~~aAk~~~~iaEiyEsdl~d---~ekaI~~YE~Aae~yk~ees~s---------sAN--KC~lKvA~yaa~l 167 (288)
T KOG1586|consen 103 YTDMGRF-TMAAKHHIEIAEIYESDLQD---FEKAIAHYEQAAEYYKGEESVS---------SAN--KCLLKVAQYAAQL 167 (288)
T ss_pred HHhhhHH-HHHHhhhhhHHHHHhhhHHH---HHHHHHHHHHHHHHHcchhhhh---------hHH--HHHHHHHHHHHHH
Confidence 6543221 11122223455544333 55 9999999999999865432111 111 2444444444556
Q ss_pred CcHHHHHHHHHHHHc
Q 004720 289 GEYESVIKCVRVLRE 303 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~ 303 (733)
++|.+|+..|+.+-.
T Consensus 168 eqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999876655
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.023 Score=42.33 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
.+..++..|..+|++++|++.|+++++.+| ++...+.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578899999999999999999999999999 8877666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.018 Score=39.79 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFD 473 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~ 473 (733)
+...|..+++.|+|++|+++|++++.+.|.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4568999999999999999999999998854
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.66 Score=45.79 Aligned_cols=128 Identities=12% Similarity=0.079 Sum_probs=97.1
Q ss_pred cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhc
Q 004720 194 LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGL 273 (733)
Q Consensus 194 g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el 273 (733)
=|.+.+..-..+..+..|+... .|.+|..+...|+ |.+|...|++++.= +-.. +
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqn--------r~rLa~al~elGr---~~EA~~hy~qalsG----~fA~---d-------- 123 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQN--------RYRLANALAELGR---YHEAVPHYQQALSG----IFAH---D-------- 123 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHH--------HHHHHHHHHHhhh---hhhhHHHHHHHhcc----ccCC---C--------
Confidence 3455555555555555554322 5667888888899 99999999999873 2111 0
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ 350 (733)
...+..++++.+..+++-.|...++.+-+.++ .-..|.+.++-++.|...|++.+|+..++-.+.+.|.+...+
T Consensus 124 -~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p--a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~ 197 (251)
T COG4700 124 -AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP--AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI 197 (251)
T ss_pred -HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC--ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence 23677899999999999999999888877654 345677889999999999999999999999998888887764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.62 E-value=6.4 Score=46.11 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
.+..+++.-...-|.++.|...|-+|++++. ++
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 4566777777778999999999999999987 54
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.37 Score=45.67 Aligned_cols=119 Identities=10% Similarity=0.034 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.-+++-|.-.++.|+|++|++.++....--| . ...++.+.-.|...|++++|+..++.+.++.+.+|++=..--.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 45578889999999999999999999888877 3 4567888999999999999999999999999888861111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGN 605 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~ 605 (733)
.++. +.......|..++. ...| +.++-.+++-+.+++.+-|++
T Consensus 90 ~gL~--~~~~~~~~~~~~~~-~drD---~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 90 RGLS--YYEQDEGSLQSFFR-SDRD---PTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHH--HHHHhhhHHhhhcc-cccC---cHHHHHHHHHHHHHHHHCcCC
Confidence 1111 22222244555552 4344 666777777777776655544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=6.6 Score=45.87 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHH------------HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCV------------RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l------------~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.||.||+.-+..-.++-|...+ +.+.++ | +-...+.++-...|+++||++.+.
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i-------~-s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTI-------H-SKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhh-------h-hHHHHhHhHhhhhcchhHhhhhhh
Confidence 7888888776665555555443 333332 1 112455666666788888777654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.31 E-value=4.1 Score=42.83 Aligned_cols=249 Identities=15% Similarity=0.100 Sum_probs=132.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
|+.++..+++++|+..|.+.+.--.. ..+...+.-....++|+.+..+|+.++..+-+.....+.+-+.++
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-------- 81 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-------- 81 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch--------
Confidence 77888999999999999999865211 222334455667889999999999554444454444444433322
Q ss_pred hhhhhhhcHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-------HHHHHhcCChHHHHHHHH
Q 004720 266 ETTELKGLKFKTLRFISAIHLQ-KGEYESVIKCVRVLREGSFDGGDHHASLPVLA-------MKAWLGLGRYNEAELELR 337 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~-~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-------~~il~~~g~~deAi~~l~ 337 (733)
...++.|.|..-.-. .+.++..++..+.+.+-. ..-.--|++ +-++++.|.|.+|+..+.
T Consensus 82 -------k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA-----~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 82 -------KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWA-----DREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred -------hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 134466666665533 346666655444333311 000111333 346778899999998876
Q ss_pred Hhhhc---cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 004720 338 GMVEI---KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV 414 (733)
Q Consensus 338 ~~l~~---~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l 414 (733)
..+.. .|....+ -..-+|. .+.+..++.+ .+...+-.+|......+. .+|
T Consensus 150 ~ll~ElKk~DDK~~L--i~vhllE----SKvyh~irnv-----~KskaSLTaArt~Ans~Y---CPp------------- 202 (421)
T COG5159 150 PLLHELKKYDDKINL--ITVHLLE----SKVYHEIRNV-----SKSKASLTAARTLANSAY---CPP------------- 202 (421)
T ss_pred HHHHHHHhhcCccce--eehhhhh----HHHHHHHHhh-----hhhhhHHHHHHHHhhccC---CCH-------------
Confidence 55421 1111111 0011111 1222222211 111111111111111111 111
Q ss_pred HHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 415 AELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 415 ~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
++..+. .+ ..|--+....||..|..+|-.|++=+....++ ..-+..++.+.+.-+.+
T Consensus 203 ----------------qlqa~l----DL--~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d-~kAc~sLkYmlLSkIMl 259 (421)
T COG5159 203 ----------------QLQAQL----DL--LSGILHCDDRDYKTASSYFIEALEGFTLLKMD-VKACVSLKYMLLSKIML 259 (421)
T ss_pred ----------------HHHHHH----HH--hccceeeccccchhHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHH
Confidence 000001 11 15667788999999999999999755444332 34556677777777777
Q ss_pred CCHHHHHHHHH
Q 004720 495 SLIDRAQEYIT 505 (733)
Q Consensus 495 ~~~~~A~e~~~ 505 (733)
+..++...+++
T Consensus 260 N~~~evk~vl~ 270 (421)
T COG5159 260 NRREEVKAVLR 270 (421)
T ss_pred hhHHHHHHHHc
Confidence 77777766664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.037 Score=38.46 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+.+++++|..++..|+ +++|+..|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD---YEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---chHHHHHHHHHHHH
Confidence 4679999999999999 99999999999999
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.2 Score=52.21 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=80.0
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
-+|+-+..++..|+ |.+|..-|..-++- -|... .....++-|+++++.+|+|+.|...+..+.
T Consensus 143 ~~Y~~A~~~~ksgd---y~~A~~~F~~fi~~---YP~s~-----------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 143 KLYNAALDLYKSGD---YAEAEQAFQAFIKK---YPNST-----------YTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHc---CCCCc-----------ccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 38999999999999 99999888876665 33221 223367778999999999999987766555
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
+..+ ..+.-|..+|-.+.++..+|+.|+|...+...+...|.+.
T Consensus 206 k~~P-~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 206 KDYP-KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HhCC-CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 5321 1333455667778899999999999999999986555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.9 Score=47.62 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh---cCChHHHHHHHHHhh
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG---LGRYNEAELELRGMV 340 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~---~g~~deAi~~l~~~l 340 (733)
+..+|--.|-+..+||.-++.++.+...+.-.-..+|.+.++.+-++.+ .|+.++|+..+..++
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 6667777899999999999999999886420023356666888999998 789999999987755
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.5 Score=44.63 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc--Cc---------hhHHHHHHHHHH----HhHHHHhcCCCCCHHHHH
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFG--LF---------EHYKSLANQYLT----FAKSALSKNETNSLNDAL 244 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~--~~---------~~~~~La~~~~~----~G~~~~~~~~~~~~e~A~ 244 (733)
|.-++.++......|+...++..+.++..+..+ .+ .....+...+.. ++..+...|+ +++|+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~---~~~a~ 82 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGD---YEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---HHHHH
Confidence 566667777888899999999999999988643 11 122344444444 3445667899 99999
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 245 KLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 245 ~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.++++++.+ +|.+. ..++.|..+|...|++..|+..|+....
T Consensus 83 ~~~~~~l~~---dP~~E--------------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALAL---DPYDE--------------EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHH---STT-H--------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCCH--------------HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999 76432 2788899999999999999999877655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.6 Score=43.88 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=127.0
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHh-h--ccCCChHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLD-I--SRISDSDERKL----LLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~-~--~~~~~~~e~~~----~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
-+..--.+|+++.-..=+.+....++... . +++.++..... .-.+..+-+++....|.|.....++.+.++-+
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 34445567777766666666666665311 1 22212211111 11244455778889999999999999999876
Q ss_pred hc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 211 FG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 211 ~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
|. .|. +.--+|.....-|| .+.|-.++++.-+.-.+ .+. -.....+.++.+.+|+..+
T Consensus 208 ~e~~p~-------L~s~Lgr~~MQ~GD---~k~a~~yf~~vek~~~k--L~~---------~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 208 PEQEPQ-------LLSGLGRISMQIGD---IKTAEKYFQDVEKVTQK--LDG---------LQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred CcccHH-------HHHHHHHHHHhccc---HHHHHHHHHHHHHHHhh--hhc---------cchhHHHHhhhhhheeccc
Confidence 43 332 23346777778899 88888888876543111 111 1112347888899999999
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC---CchHHHHhHHHHH
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG---IPECIWVSAVEAY 357 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~---~~~~~~ls~~~ly 357 (733)
+|-.|...++.+... .+.+|.....|+-|++..|+..+|++.+..++...| ..+.+.+++-..|
T Consensus 267 n~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred chHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 999998888777654 466777779999999999999999999998884443 2344444444333
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.27 Score=50.22 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=73.0
Q ss_pred HHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHH-------HHHHHHHHHHhhC--C-----C
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLID-------RAQEYITEAEKLE--P-----N 513 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~-------~A~e~~~~A~~ld--p-----~ 513 (733)
.+-....+++|++-|.+|+.... .+.. +...|.++.++|.+|-.+|+-+ +|.+.|.+|...+ | +
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 34456789999999999985332 1211 3578999999999999999954 4555555554443 2 1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh--HHHHHH
Q 004720 514 IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT--DFLSLA 554 (733)
Q Consensus 514 ~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~--~lL~la 554 (733)
....|+.+.++-+.|++++|++.+.++......+. -++.+|
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 34566778888888888888888888887765433 444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=5.9 Score=41.30 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hhCC---ChHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE----KLEP---NIASA 517 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~----~ldp---~~~t~ 517 (733)
-....+.-.|.|..+.+.|+...+.+|.. ...+.+.++..-++.|+.+-|..++++.+ +++. +....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQ------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 35677788899999999999998866532 23688999999999999999999999554 4443 45556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
..+..+++-.+|+-+|...+.++..-.+.+|-...--+..-.=.|+...|++.++..++
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999988777766665553222221111224567777888887777
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.015 Score=64.53 Aligned_cols=98 Identities=17% Similarity=0.060 Sum_probs=76.3
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......++..++.+.|+.|...|+||+++.+. . ..++..||-+++..++|..|++++.+|++++|
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn----c----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP 69 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPN----C----------AIYFANRALAHLKVESFGGALHDALKAIELDP 69 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc----c----------eeeechhhhhheeechhhhHHHHHHhhhhcCc
Confidence 455667899999999999999999999998652 0 13555678889999999999999999999998
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
...+ .|+..|....+.+. +.+|...|++...+
T Consensus 70 ~~~K-------~Y~rrg~a~m~l~~---~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 70 TYIK-------AYVRRGTAVMALGE---FKKALLDLEKVKKL 101 (476)
T ss_pred hhhh-------eeeeccHHHHhHHH---HHHHHHHHHHhhhc
Confidence 7443 36666666666666 66776666666665
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.041 Score=38.76 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=28.1
Q ss_pred HHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 504 ITEAEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 504 ~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
|++|++++| ++...+.+..++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999 89999999999999999998863
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.11 Score=56.62 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc-------hhhhhhHH----HHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 438 AMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV-------ENRILRAK----SFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 438 ~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~-------~~~~~~ak----l~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
|+...| ..|..+|++|+|..|+--|.-+|++...+. ..+.+.++ +.-.+..||+++++.+-|.+...+
T Consensus 175 wl~vAL-~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 175 WLQVAL-KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 444444 478888999998888888888877654221 00123333 456899999999999999999999
Q ss_pred HHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 507 AEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 507 A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
.+-++| ++..++..+-+.-....+.+|.+
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 77777766777666667766654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.12 Score=40.33 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.+++.+|..|.++|+|++|.++++.+++++| +.-..-+.-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3678999999999999999999999999999 665554433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.3 Score=43.76 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=87.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc-cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---ChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSML-YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP---NIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp---~~~t~~~~~ 521 (733)
.|+...+.|+|.+|...|..++. ++-.+ +.+.-.++.+.+.++++..|...+++..+-+| .+.+.++..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d-------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHD-------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCC-------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 68888999999999999999985 54433 34677889999999999999999998888877 688889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAV 568 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~ 568 (733)
+++--.|.++.|-..++-..++-+ +|.--+.-+....+.|....+.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHH
Confidence 999999999988888888888766 3443333333333445444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.18 Score=50.76 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
+++..|.-+-..|=+.-|.-=|..+|.+.| ..+.++..++..+..-|+||.|.+.++..+++|| +-.+..++
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P-------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCC-------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 455578888888888888888999998876 4567899999999999999999999999999999 66666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.-..-=-|.++.|.+.+.++-...+.+|
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 5555556889999999988888776666
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=10 Score=41.74 Aligned_cols=304 Identities=13% Similarity=0.048 Sum_probs=160.9
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
.+--+++-+|..-...|+-.+|-+.=.++-.++.+ + ..-++.+|- |.+++..|+++.|..-|+-..+
T Consensus 82 drgyqALStGliAagAGda~lARkmt~~~~~llss--------D--qepLIhlLe--AQaal~eG~~~~Ar~kfeAMl~- 148 (531)
T COG3898 82 DRGYQALSTGLIAAGAGDASLARKMTARASKLLSS--------D--QEPLIHLLE--AQAALLEGDYEDARKKFEAMLD- 148 (531)
T ss_pred hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhc--------c--chHHHHHHH--HHHHHhcCchHHHHHHHHHHhc-
Confidence 34456777888888888888888877777655531 1 111334444 4477789999999887776553
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
+|+...-=-+.+| ......|+ ++.|.++-+++++. .+ .+.|. .+..-......|
T Consensus 149 ---dPEtRllGLRgLy---leAqr~Ga---reaAr~yAe~Aa~~---Ap-------------~l~WA-~~AtLe~r~~~g 202 (531)
T COG3898 149 ---DPETRLLGLRGLY---LEAQRLGA---REAARHYAERAAEK---AP-------------QLPWA-ARATLEARCAAG 202 (531)
T ss_pred ---ChHHHHHhHHHHH---HHHHhccc---HHHHHHHHHHHHhh---cc-------------CCchH-HHHHHHHHHhcC
Confidence 3433221111122 23446688 89999999999887 32 12232 333334456778
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcH------HHHHHHHHHhcC-ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASL------PVLAMKAWLGLG-RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~------~~lk~~il~~~g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
+++.|++.++..++-. -..+.. .+|-.+.....+ +...|.......++..+....-.+-....|+..+.
T Consensus 203 dWd~AlkLvd~~~~~~----vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 203 DWDGALKLVDAQRAAK----VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred ChHHHHHHHHHHHHHH----hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 9999999998666521 112221 133333333332 34455555444443222222222233333332222
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAV 442 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~l 442 (733)
-..+-++++..+ +..| |+..+
T Consensus 279 ---------------------~rKg~~ilE~aW--K~eP-HP~ia----------------------------------- 299 (531)
T COG3898 279 ---------------------LRKGSKILETAW--KAEP-HPDIA----------------------------------- 299 (531)
T ss_pred ---------------------hhhhhhHHHHHH--hcCC-ChHHH-----------------------------------
Confidence 011222333444 3334 33322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFK 522 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~k 522 (733)
..|-..+--+.+++=.+.+-++... ++|++......+...+--|+|..|..-.+-+.+.+|--...+++..
T Consensus 300 -----~lY~~ar~gdta~dRlkRa~~L~sl----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAd 370 (531)
T COG3898 300 -----LLYVRARSGDTALDRLKRAKKLESL----KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLAD 370 (531)
T ss_pred -----HHHHHhcCCCcHHHHHHHHHHHHhc----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHH
Confidence 0011111111222222222111110 1344455566677777778888888777777777774445556677
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcc
Q 004720 523 IYLQK-NDQEGAINQILAMTICL 544 (733)
Q Consensus 523 i~l~~-gd~e~Al~~l~~~~~~~ 544 (733)
|..-+ ||..+..+-+-+..+.+
T Consensus 371 IeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 371 IEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhhccCchHHHHHHHHHHhcCC
Confidence 76655 88887777777766654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.11 Score=38.75 Aligned_cols=39 Identities=26% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHH
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSL 220 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~L 220 (733)
.+...|.+++..|+++.|+.+|++++...|+++.....+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 345568999999999999999999999999988654433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.4 Score=37.31 Aligned_cols=230 Identities=25% Similarity=0.239 Sum_probs=145.4
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.+.+..+...+..+....+.. .....+...+..+...++ +..+...+...... ... .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~--------------~ 92 (291)
T COG0457 36 LGELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGR---LEEALELLEKALEL-ELL--------------P 92 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHccc---HHHHHHHHHHHHhh-hhc--------------c
Confidence 566667777777777665432 122346667777778888 88888888777764 001 1
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHH-HHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMK-AWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~-il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
.....+..++..+...+.+++++..+..+.... ............ ++...|++++|...+...+...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------ 162 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALD----PDPDLAEALLALGALYELGDYEEALELYEKALELDPE------ 162 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC----CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Confidence 123366777888888888999999888887642 122222333333 677777777777776544221000
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
. . . .
T Consensus 163 ------------------------------------------~------~-~------~--------------------- 166 (291)
T COG0457 163 ------------------------------------------L------N-E------L--------------------- 166 (291)
T ss_pred ------------------------------------------c------c-c------h---------------------
Confidence 0 0 0 0
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
...++..+......++++.|+..+..++...+.. ....+..++.++...+++++|...+.++....
T Consensus 167 --------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 167 --------AEALLALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred --------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 0001113333667788888888888888776542 23567888888888888888888888888888
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
| .....+....++...++.+.+...+.......+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 8 355555555555566778888888877776644
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.084 Score=37.53 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
+.+.|..+.+.|+|++|+++|+.+|.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4568999999999999999999987654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=13 Score=40.83 Aligned_cols=292 Identities=20% Similarity=0.103 Sum_probs=174.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
.-++...||-..|..|-.|+..+.....+. | +...-+...+-.|+ |+.|.+-|+.-++-
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqep---L--IhlLeAQaal~eG~---~~~Ar~kfeAMl~d------------- 149 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEP---L--IHLLEAQAALLEGD---YEDARKKFEAMLDD------------- 149 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchH---H--HHHHHHHHHHhcCc---hHHHHHHHHHHhcC-------------
Confidence 345668899999999999999765542221 2 12223556667899 99998766654442
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
.|+|.-.||.|-..--..|.++-|..+-+.+-.. .+.-|+..---++.....|+.|.|++-+.......-
T Consensus 150 ----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-- 219 (531)
T COG3898 150 ----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-- 219 (531)
T ss_pred ----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--
Confidence 3345445554444444568899999887766553 456788888888888899999999998764331000
Q ss_pred hHHHHhHHHHHHHhchhhhHHHHHHHHHh-----hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHH
Q 004720 347 ECIWVSAVEAYFQAAGTAGAETAKGVFLG-----LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDE 421 (733)
Q Consensus 347 ~~~~ls~~~ly~~~~~~~a~~~lk~~l~~-----ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e 421 (733)
.. ....+-.+.+++. +++ .+| ..+.....+.+ +..||.
T Consensus 220 ----------ie----~~~aeR~rAvLLtAkA~s~ld-adp--~~Ar~~A~~a~--KL~pdl------------------ 262 (531)
T COG3898 220 ----------IE----KDVAERSRAVLLTAKAMSLLD-ADP--ASARDDALEAN--KLAPDL------------------ 262 (531)
T ss_pred ----------hc----hhhHHHHHHHHHHHHHHHHhc-CCh--HHHHHHHHHHh--hcCCcc------------------
Confidence 00 0001111111110 000 000 01111111111 111111
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQ 501 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~ 501 (733)
.+-. + --+..+|+.|+...+-...+-+-+-.| ||+.+.+|+ +.+.|+ -++
T Consensus 263 ---------------vPaa-v--~AAralf~d~~~rKg~~ilE~aWK~eP-----HP~ia~lY~-----~ar~gd--ta~ 312 (531)
T COG3898 263 ---------------VPAA-V--VAARALFRDGNLRKGSKILETAWKAEP-----HPDIALLYV-----RARSGD--TAL 312 (531)
T ss_pred ---------------chHH-H--HHHHHHHhccchhhhhhHHHHHHhcCC-----ChHHHHHHH-----HhcCCC--cHH
Confidence 0000 1 156778999999999999999888777 456555554 334444 444
Q ss_pred HHHHHHHhh---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 502 EYITEAEKL---EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 502 e~~~~A~~l---dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.=++++.++ -| |....+.....++.-|++-.|...-+......+-..-+|.++-.+.-+.|++..+..=|..-+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555443 56 7888899999999999998888777777666553334666665555556888888766665554
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.098 Score=56.11 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC---CC---ch------hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLP---FD---VE------NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~---~~---~~------~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.|+..|+.++|+.|..-|.+++.... .+ +. -+.++-.++++++.|-++.+.+..|+.....+++.++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 478899999999999999999886432 11 00 0235567899999999999999999999999999988
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
....+|.+...+....++++|++.++......+.+..
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 8899999999999999999999999888877665554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.068 Score=37.64 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
.|++++++.|.+ +..++++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-------HHHHHHHHHHHHHCcCHHhhcC
Confidence 378888888755 5689999999999999999974
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.14 Score=36.39 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 484 FRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 484 ~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+.++|.+|.+.|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999997655
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.3 Score=46.72 Aligned_cols=80 Identities=11% Similarity=-0.042 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
.-..+.++|+-.+|++.+++++|..+++..+.++| ++.-.--+.-+|.+.|-+..|+..++.+....+.+|+.-.+..+
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 56788899999999999999999999999999999 88878889999999999999999999998777778886555544
Q ss_pred H
Q 004720 557 E 557 (733)
Q Consensus 557 ~ 557 (733)
.
T Consensus 258 l 258 (269)
T PRK10941 258 I 258 (269)
T ss_pred H
Confidence 3
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.5 Score=37.81 Aligned_cols=121 Identities=18% Similarity=0.062 Sum_probs=79.9
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHH--HHHHHHHHHH--HHHHHHccCHHHHHHHHHHHH
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDER--KLLLDINIAR--SRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~--~~~l~~l~~r--A~~a~~~g~~~~A~~~~~rA~ 207 (733)
+-+++-.|..-+..|-|..|...+.+|++.- |+-+.+|. ..-|+.+|.. +.+.+..|+|+++++-.++++
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~s------rtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVS------RTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH------TTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh------ccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3455666777788889999999999999863 22222111 1147877744 788889999998888888877
Q ss_pred hhhhc---C-chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 208 CLLFG---L-FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 208 ~l~~~---~-~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
..-.+ . .+.-+.-..+-++.+..+-..|. .++|++.|+.+-+++.+.+++.
T Consensus 83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr---~~eA~~~fr~agEMiaERKGE~ 137 (144)
T PF12968_consen 83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGR---KEEALKEFRMAGEMIAERKGEM 137 (144)
T ss_dssp HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH--S--
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHcCCC
Confidence 64221 1 12223344556678888889999 9999999999999987765443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.57 Score=53.65 Aligned_cols=110 Identities=18% Similarity=0.095 Sum_probs=83.2
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.++.+.|...+.+.....|..+ --++.-|+.+..+|+ .++|+.+|+++++.-.+ -.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~-------lfl~~~gR~~~~~g~---~~~Ai~~~~~a~~~q~~-------------~~Q 302 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA-------LFLFFEGRLERLKGN---LEEAIESFERAIESQSE-------------WKQ 302 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHhcC---HHHHHHHHHHhccchhh-------------HHh
Confidence 4566678888888887777644 235567999999999 99999999998854111 134
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc-HHHHHHHHHHhcCCh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS-LPVLAMKAWLGLGRY 329 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~-~~~lk~~il~~~g~~ 329 (733)
+..-++..++.+|+-..+|++|.+++..+.+.+ +-.+. ..|+.+-|+...|+.
T Consensus 303 l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s----~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 303 LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES----KWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHhhccc
Confidence 455688899999999999999999999998742 22222 239999999999988
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=2.7 Score=41.94 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=73.6
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
.....++.....++ +++|..-|+.++.. .. + +.++.-+-..|+.+.++.+.+|+|++.++-..
T Consensus 91 aaL~lAk~~ve~~~---~d~A~aqL~~~l~~---t~-D----------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 91 AALELAKAEVEANN---LDKAEAQLKQALAQ---TK-D----------ENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHhhcc---HHHHHHHHHHHHcc---ch-h----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 34456778888899 99999999998875 21 1 23444455568999999999999999888665
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
. ..-.+-...+++.+++..|+-++|+..+...+..
T Consensus 154 ~-----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 154 E-----ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred c-----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4 1122333489999999999999999999877743
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.18 E-value=27 Score=42.85 Aligned_cols=297 Identities=16% Similarity=0.137 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHHHhHHHhhcccccccccCCCCCChhhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhcc
Q 004720 66 NSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDL 145 (733)
Q Consensus 66 ~~~~~~l~~~a~~LWN~~v~~~~~~~~~~~~~~~~~~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~ 145 (733)
...|--+.+.-..||+-+....|. -. |++--+.+..+.+....|+++--..+-+|.++
T Consensus 941 ~~aRYlv~R~D~~LW~~VL~e~n~------------~r----RqLiDqVv~tal~E~~dPe~vS~tVkAfMtad------ 998 (1666)
T KOG0985|consen 941 SQARYLVERSDPDLWAKVLNEENP------------YR----RQLIDQVVQTALPETQDPEEVSVTVKAFMTAD------ 998 (1666)
T ss_pred HHHHHHHhccChHHHHHHHhccCh------------HH----HHHHHHHHHhcCCccCChHHHHHHHHHHHhcC------
Confidence 445666777778899988877442 11 66666677777666666665544444444433
Q ss_pred CCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHH
Q 004720 146 KKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYL 225 (733)
Q Consensus 146 g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~ 225 (733)
=+..=++.+||-+ .+.+-=.+.+.. -.+|+.- + ..-+...-.++.+|..+.+...-. --.....+|
T Consensus 999 -Lp~eLIELLEKIv-------L~~S~Fse~~nL-QnLLiLt---A-ikad~trVm~YI~rLdnyDa~~ia-~iai~~~Ly 1064 (1666)
T KOG0985|consen 999 -LPNELIELLEKIV-------LDNSVFSENRNL-QNLLILT---A-IKADRTRVMEYINRLDNYDAPDIA-EIAIENQLY 1064 (1666)
T ss_pred -CcHHHHHHHHHHh-------cCCcccccchhh-hhhHHHH---H-hhcChHHHHHHHHHhccCCchhHH-HHHhhhhHH
Confidence 2333333333333 111100111111 1122111 1 123444555666665544321000 011222234
Q ss_pred HHhHHHHhcCCCCCHHHHHH-------HHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 226 TFAKSALSKNETNSLNDALK-------LMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 226 ~~G~~~~~~~~~~~~e~A~~-------~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
.-+-..+++-+. +..|++ -+.+|++..++.. .-.+|..||.+.++.+...+|++.|
T Consensus 1065 EEAF~ifkkf~~--n~~A~~VLie~i~~ldRA~efAe~~n---------------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDM--NVSAIQVLIENIGSLDRAYEFAERCN---------------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHHHHHhcc--cHHHHHHHHHHhhhHHHHHHHHHhhC---------------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 333333443332 344433 2345555533321 1127888899988888877787766
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh---ccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE---IKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLG 375 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~---~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ 375 (733)
-++ .+|+.+.--+++..+.|.+++-++++.|.=. .+..... ++-+|.+.++
T Consensus 1128 ika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~e----Li~AyAkt~r------------- 1181 (1666)
T KOG0985|consen 1128 IKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSE----LIFAYAKTNR------------- 1181 (1666)
T ss_pred Hhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHH----HHHHHHHhch-------------
Confidence 544 5788887778888888888888888765421 1111000 0111111110
Q ss_pred hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC
Q 004720 376 LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD 455 (733)
Q Consensus 376 ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~ 455 (733)
--.+++.+.|+..+ -+-.-|+.+|+.|.
T Consensus 1182 --------------------------------------------l~elE~fi~gpN~A--------~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1182 --------------------------------------------LTELEEFIAGPNVA--------NIQQVGDRCFEEKM 1209 (1666)
T ss_pred --------------------------------------------HHHHHHHhcCCCch--------hHHHHhHHHhhhhh
Confidence 01122222222222 12236999999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE 508 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~ 508 (733)
|+.|--.|.-.- + +-+++.....+|+|.-|.....+|-
T Consensus 1210 y~aAkl~y~~vS-----------N----~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1210 YEAAKLLYSNVS-----------N----FAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hHHHHHHHHHhh-----------h----HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999887776531 1 4567888889999999988887763
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.3 Score=55.40 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=78.9
Q ss_pred HHHHHHHH-HccCHHHHHHHHHHHHhhhhcCc-hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 184 IARSRTAW-EVLEQNLAITLLNRAKCLLFGLF-EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 184 ~~rA~~a~-~~g~~~~A~~~~~rA~~l~~~~~-~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
++-|+.|| .+|+...|+.|+.+|..+.|... -. +.+++..+++-+- ..+|-+++.+++.+....
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~-------~v~la~~~~~~~~---~~da~~~l~q~l~~~~se---- 675 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP-------LVNLANLLIHYGL---HLDATKLLLQALAINSSE---- 675 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhccc-------HHHHHHHHHHhhh---hccHHHHHHHHHhhcccC----
Confidence 35699999 78999999999999999888522 12 3344444445554 888999999999993221
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH--HHHHHH
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP--VLAMKA 322 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~--~lk~~i 322 (733)
+- .+..+|+.|+...+.++|++.++.+.+. .+.+|... +++++|
T Consensus 676 ---pl----------~~~~~g~~~l~l~~i~~a~~~~~~a~~~----~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 676 ---PL----------TFLSLGNAYLALKNISGALEAFRQALKL----TTKCPECENSLKLIRC 721 (886)
T ss_pred ---ch----------HHHhcchhHHHHhhhHHHHHHHHHHHhc----CCCChhhHHHHHHHHH
Confidence 11 5677899999999999999999888874 34555544 566655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=8.4 Score=36.50 Aligned_cols=125 Identities=18% Similarity=0.074 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhhCC----ChHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL-CYLGLSLIDRAQEYITEAEKLEP----NIASAFL 519 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~-cyl~l~~~~~A~e~~~~A~~ldp----~~~t~~~ 519 (733)
..|......++|..+++.+..++...+.+.. . ...... +|...|++++|...+.+++..+| .....+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 100 NLGLLLEALGKYEEALELLEKALALDPDPDL-----A--EALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 4677788888899999999999887664421 1 122223 89999999999999999977766 2233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDF-TTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~-~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
....+...++.+.|+..+.......+. ...............+....++..+...+.
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 455567788999999999999888775 344444444555556667777777777666
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.97 E-value=19 Score=40.62 Aligned_cols=292 Identities=13% Similarity=0.151 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhh----h-----------c--------CchhHHHHHHHHHHHhHHHHhcCCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLL----F-----------G--------LFEHYKSLANQYLTFAKSALSKNETN 238 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~----~-----------~--------~~~~~~~La~~~~~~G~~~~~~~~~~ 238 (733)
+++.+..-|...|+-..+...+++.-+-- + . .|+. ...+.+|.+--..-.-.|-
T Consensus 214 yl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpke-qicaLV~l~tv~hsm~~gy-- 290 (629)
T KOG2300|consen 214 YLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKE-QICALVYLVTVIHSMPAGY-- 290 (629)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHh-hhHhhhhhhHHhhhhhhHH--
Confidence 46677777778888887777665443221 1 0 1111 1122233322222223344
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc----
Q 004720 239 SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS---- 314 (733)
Q Consensus 239 ~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~---- 314 (733)
|+++.++=.+++...++-+....- .+-+.-.+...+..++.|-+-.|++.+|++-+.-+.+- ....|.
T Consensus 291 -~~~~~K~tDe~i~q~eklkq~d~~---srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w----~~r~p~~~Ll 362 (629)
T KOG2300|consen 291 -FKKAQKYTDEAIKQTEKLKQADLM---SRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNW----CTRFPTPLLL 362 (629)
T ss_pred -HHHHHHHHHHHHHHHhhcccccch---hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHhCCchHHH
Confidence 788888888888876665433211 12234456668888899999999999999876555542 123333
Q ss_pred ------HHHHHHHHHHhcCChHHHHHHHHHhhhcc---CCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHH
Q 004720 315 ------LPVLAMKAWLGLGRYNEAELELRGMVEIK---GIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAK 385 (733)
Q Consensus 315 ------~~~lk~~il~~~g~~deAi~~l~~~l~~~---~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~ 385 (733)
..++.+--...-+-++.|+.++...++.. +.-...-++++-.|...++ . +
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~------------------~---e 421 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD------------------A---E 421 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc------------------H---H
Confidence 12333333334467899999987766321 1111112222222322211 0 1
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 386 AAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEK 465 (733)
Q Consensus 386 ~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~ 465 (733)
....+++.+ +|.+...+. ...-...+++-.|--.|++++|.||-.+..+
T Consensus 422 d~y~~ld~i-----~p~nt~s~s--------------------------sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 422 DLYKALDLI-----GPLNTNSLS--------------------------SQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred HHHHHHHhc-----CCCCCCcch--------------------------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111222222 111110000 0011123455689999999999999999999
Q ss_pred hhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CChHHHH----HHHHHHHhcCC--HHHHHHH
Q 004720 466 SMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE---PNIASAF----LKFKIYLQKND--QEGAINQ 536 (733)
Q Consensus 466 aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld---p~~~t~~----~~~ki~l~~gd--~e~Al~~ 536 (733)
.|..-.. ++..--.+-.+--++.+++.+|+..++.+.+.-+.++. |++.+++ +.-+++...|+ .+.+.+.
T Consensus 471 ~Lkmana-ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~ 549 (629)
T KOG2300|consen 471 TLKMANA-EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEA 549 (629)
T ss_pred HHhhcch-hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9986521 11112334445667778888899999999988777664 3555554 23344555555 3444433
Q ss_pred H
Q 004720 537 I 537 (733)
Q Consensus 537 l 537 (733)
+
T Consensus 550 ~ 550 (629)
T KOG2300|consen 550 F 550 (629)
T ss_pred H
Confidence 3
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.86 E-value=2 Score=48.43 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=94.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc----
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR---- 262 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~---- 262 (733)
.--||+..+.+.-+....+|+++.|.-+ ..|.-++. .+..+..++..+|++|++..+..-+...
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCA-------dAYILLAE-----EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCA-------DAYILLAE-----EEASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhh-------HHHhhccc-----ccccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 3478999999999999999999998644 33543333 2222378999999999998554322110
Q ss_pred cchh----hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 263 TREE----TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 263 ~~~~----~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+.. .........-+-+.||.|.-+.|..++|++.+..+.+.++ ...+-.+.+..+++++..++|+++..-+.+
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p--~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP--NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC--ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0000 0000111233567799999999999999999888876432 223445669999999999999998877653
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.84 E-value=7.4 Score=42.09 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=91.1
Q ss_pred hhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHH
Q 004720 102 YAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLD 181 (733)
Q Consensus 102 ~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~ 181 (733)
+..-.+|.+.+.++ ......+...++.++.+-+.|+++.|...+.++....+..... ...
T Consensus 126 ~~il~~R~~~l~~~----------~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----------~~~ 185 (352)
T PF02259_consen 126 EPILSLRRLVLSLI----------LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----------LPR 185 (352)
T ss_pred HHHHHHHHHHHhcc----------cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----------Ccc
Confidence 34457788888877 1113345677888999999999999999998887654211100 124
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh-hh-c-------------------------CchhHHHHHHHHHHHhHHHHhc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCL-LF-G-------------------------LFEHYKSLANQYLTFAKSALSK 234 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l-~~-~-------------------------~~~~~~~La~~~~~~G~~~~~~ 234 (733)
+....|...|..|+...|+..++....- .. . ........+.+++.+|+-....
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 6667799999999999999999888771 11 1 1223456778888888866665
Q ss_pred ------CCCCCHHHHHHHHHHHHHH
Q 004720 235 ------NETNSLNDALKLMNEALEL 253 (733)
Q Consensus 235 ------~~~~~~e~A~~~l~~Alel 253 (733)
++ ++++.+.|+++.++
T Consensus 266 ~~~~~~~~---~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 266 YSKLSSES---SDEILKYYKEATKL 287 (352)
T ss_pred cccccccc---HHHHHHHHHHHHHh
Confidence 55 88889999999888
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.76 E-value=2.1 Score=48.02 Aligned_cols=257 Identities=13% Similarity=0.064 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH---HHhh---C---
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITE---AEKL---E--- 511 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~---A~~l---d--- 511 (733)
.+.+|.|.++|....|-.|++.-..-..+...-+. ..-+......-.-|+...+.++|..+.+- .+.. .
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~--~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLES--SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 35567888888888888888776554332221211 23444445555566666777777765542 1111 0
Q ss_pred ---C----------Ch------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHH
Q 004720 512 ---P----------NI------------ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSV 566 (733)
Q Consensus 512 ---p----------~~------------~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~ 566 (733)
| +. ..+.+.-+.+++..+...+..-++.++...+.++..|.+-.+.--..||.+.
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~k 258 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPK 258 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHH
Confidence 1 00 1133444556677788888888898888888888888888888888899987
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHH--H--HHhhcCChhHHHHHHHHHHH-HhhhcccCccCCCc---cccchh
Q 004720 567 AVAALSNLLNFYTSGKPMPTKEVVVLRTIVT--I--LTQETGNESEVLKYMKRAHA-RTSEIGANCFFGTE---EAGRRE 638 (733)
Q Consensus 567 a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~--l--~~~~~~~~~~~l~~~~~A~~-~l~~~~~~~~~~~~---~~~~~E 638 (733)
|.+-| +...-...+..+..+.+.||+.- | |+-.-+...--..+|++|++ .-+++.- .+-+.. -...+.
T Consensus 259 A~KlL---~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~-g~~~~~~~tls~nks 334 (696)
T KOG2471|consen 259 AMKLL---LVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN-GLKPAKTFTLSQNKS 334 (696)
T ss_pred HHHHH---HhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc-cCCCCcceehhcccc
Confidence 76544 33221222334445667777741 0 11111223345668888886 4444311 111111 111222
Q ss_pred hHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHccccCCchhhhHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 004720 639 QNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMNNE 714 (733)
Q Consensus 639 ~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~~~~~~~~~c~~ll~~~~~~~~~~~~~~~~~~~~~ 714 (733)
.+ +=||+|++.+..+.|-.+++.|..+.+.|+- ++-.-.|.--| -+|+ --..++++-+++++.++
T Consensus 335 ~e----ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~---nPrlWLRlAEc--Cima--~~~~l~ee~~~s~s~~~ 399 (696)
T KOG2471|consen 335 ME----ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR---NPRLWLRLAEC--CIMA--LQKGLLEEGNSSLSRSE 399 (696)
T ss_pred hh----hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHH--HHHH--hhhhhhhhccCCccccc
Confidence 22 3599999999999999999999999997664 33444445555 3565 44556666666666544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.3 Score=43.84 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHH
Q 004720 217 YKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIK 296 (733)
Q Consensus 217 ~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~ 296 (733)
.+..-..+..+|.-+.+.|| ++.|+++|.++.+.+.. ...+...+..+..+.+..+++..+..
T Consensus 32 kesir~~~~~l~~~~~~~Gd---~~~A~k~y~~~~~~~~~--------------~~~~id~~l~~irv~i~~~d~~~v~~ 94 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGD---LEEALKAYSRARDYCTS--------------PGHKIDMCLNVIRVAIFFGDWSHVEK 94 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhcCC--------------HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566778899999999999 99999999999998432 12345577788889999999999999
Q ss_pred HHHHHHccCCCCCCCCCcHHHHHHHHHH-----hcCChHHHHHHHHHhhh
Q 004720 297 CVRVLREGSFDGGDHHASLPVLAMKAWL-----GLGRYNEAELELRGMVE 341 (733)
Q Consensus 297 ~l~~a~~~~~~~~~~~p~~~~lk~~il~-----~~g~~deAi~~l~~~l~ 341 (733)
+++.+.... ++..++..-.+++++. ..++|.+|-..+...+.
T Consensus 95 ~i~ka~~~~---~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 95 YIEKAESLI---EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHH---hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 999998854 3333444455555544 44789998888876653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.29 E-value=2 Score=43.89 Aligned_cols=104 Identities=14% Similarity=0.033 Sum_probs=67.5
Q ss_pred cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhc
Q 004720 194 LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGL 273 (733)
Q Consensus 194 g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el 273 (733)
-..+.|++.|.-|+-...-.......+|.++..++=.+-..++ .+....++++|++..++.-..... +. ...-
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~---~~~E~~fl~~Al~~y~~a~~~e~~-~~---~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD---EENEKRFLRKALEFYEEAYENEDF-PI---EGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHhCcC-CC---CCch
Confidence 3455666666655543322122234677888888888888888 677777777777766553211111 00 0112
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
...++..+|..+...|++++|.+.+..+...
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3458888999999999999999999999874
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.47 Score=53.30 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=82.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL---SLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l---~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.|+-.|-.+.+..|+..|..++...|. ..-++-|++.++++. |+.--|...|.+|+++|| ..+.+|.++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~-------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPD-------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccc-------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 788888888899999999999887764 456888999999887 577889999999999999 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
......+.+.+|++|...++...+.
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCch
Confidence 9999999999999999999887653
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.22 Score=32.37 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
..+.+++.||...+++++|...+.++++++|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678999999999999999999999998877
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.2 Score=44.30 Aligned_cols=96 Identities=16% Similarity=0.042 Sum_probs=74.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYL 525 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l 525 (733)
.+..+++.+++++|+.-.+.+|.. |.|+ .-.+-+-.+++.+.+..|++|+|...++..-.-+-.....-++..+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~-t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ-TKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc-chhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHH
Confidence 788899999999999999999864 3332 355666788999999999999999988632111112334567899999
Q ss_pred hcCCHHHHHHHHHHHHhccC
Q 004720 526 QKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~ 545 (733)
.+||.++|...|+......+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HcCchHHHHHHHHHHHHccC
Confidence 99999999999999888753
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.90 E-value=21 Score=38.60 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=147.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhh--h-cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 184 IARSRTAWEVLEQNLAITLLNRAKCLL--F-GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 184 ~~rA~~a~~~g~~~~A~~~~~rA~~l~--~-~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.-++...+...+++.++..+.+..+.. + ..++.....-....++|..+...|+ +++-...++..-.++..-.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~---~~~lr~li~~~Rpf~~~v~-- 82 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGD---AEELRDLITSLRPFLSSVS-- 82 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHhh--
Confidence 345666677788888999998888742 2 2444556667778899999999999 5555544444444432211
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKG-----EYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEA 332 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~-----~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deA 332 (733)
...-+++.|.|.......+ ..+-+.+|++-+... +... +..--.+..|...++|.+|
T Consensus 83 ----------KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-----kRtFLRq~Learli~Ly~d~~~YteA 147 (411)
T KOG1463|consen 83 ----------KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE-----KRTFLRQSLEARLIRLYNDTKRYTEA 147 (411)
T ss_pred ----------hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1123457777777766553 233345666666542 1100 1112334567777888888
Q ss_pred HHHHHHhhhc---cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHH
Q 004720 333 ELELRGMVEI---KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKL 409 (733)
Q Consensus 333 i~~l~~~l~~---~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ 409 (733)
+..+..+++. .|....+ .+.+... ++++..++.+ .+...+=..|....+-+. .+|
T Consensus 148 laL~~~L~rElKKlDDK~lL----vev~llE--SK~y~~l~Nl-----~KakasLTsART~AnaiY---cpP-------- 205 (411)
T KOG1463|consen 148 LALINDLLRELKKLDDKILL----VEVHLLE--SKAYHALRNL-----PKAKASLTSARTTANAIY---CPP-------- 205 (411)
T ss_pred HHHHHHHHHHHHhcccccce----eeehhhh--hHHHHHHhcc-----hhHHHHHHHHHHhhcccc---cCH--------
Confidence 8876554421 1111110 0000000 1112222110 000000000000000110 111
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCchhhhhhHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSML-YLPFDVENRILRAKSFRVLC 488 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la 488 (733)
++-.+.. -..|-.|...+||..|..+|-.|++ |..-+. +..-...+..|-
T Consensus 206 ---------------------qlQa~lD------LqSGIlha~ekDykTafSYFyEAfEgf~s~~~--~v~A~~sLKYMl 256 (411)
T KOG1463|consen 206 ---------------------QLQATLD------LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD--DVKALTSLKYML 256 (411)
T ss_pred ---------------------HHHHHHH------HhccceeecccccchHHHHHHHHHccccccCC--cHHHHHHHHHHH
Confidence 0100011 1256667777999999999999997 444332 145667788999
Q ss_pred HHHHhCCCHHHHHHHHHH--HHhhCC-ChHHHHHHHHHHHh--cCCHHHHHHHHH
Q 004720 489 LCYLGLSLIDRAQEYITE--AEKLEP-NIASAFLKFKIYLQ--KNDQEGAINQIL 538 (733)
Q Consensus 489 ~cyl~l~~~~~A~e~~~~--A~~ldp-~~~t~~~~~ki~l~--~gd~e~Al~~l~ 538 (733)
+|-+.++..++....+.. +++.+. .+....-.+..+-. ..|++.|+..|+
T Consensus 257 LcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 257 LCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred HHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 999999999987777652 333322 33333333333332 234555555553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.4 Score=43.48 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=78.1
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|.-+++.|+++.|.++|+++-+.+-. ....+++.....++++..||+.....++.||..+.....
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTS-----------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 346799999999999999999998876421 112367888888999999999999999999998865522
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALE 252 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Ale 252 (733)
+ -.....+--.-|..++..++ |..|...|-.+.-
T Consensus 108 d-~~~~nrlk~~~gL~~l~~r~---f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 108 D-WERRNRLKVYEGLANLAQRD---FKEAAELFLDSLS 141 (177)
T ss_pred h-HHHHHHHHHHHHHHHHHhch---HHHHHHHHHccCc
Confidence 1 33444455556888888899 9999877766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.27 Score=33.42 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.++++|.||.++|++++|++.+++.++..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 468899999999999999999999888877
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.4 Score=33.00 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+.+++.+|..+...|+ +++|...|++++++
T Consensus 1 a~~~~~lg~~y~~~~~---~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGD---YEEALEYFEKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTTS---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence 4579999999999999 99999999999998
|
... |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=91.27 E-value=4 Score=37.45 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=72.9
Q ss_pred HHHHHHHHHH--hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHH
Q 004720 218 KSLANQYLTF--AKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVI 295 (733)
Q Consensus 218 ~~La~~~~~~--G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl 295 (733)
+..+..|..+ |.-.+..+- |++|..-+.+|.++-..-|...-. +. ...-+-++-.|+.++...|.|++++
T Consensus 4 keVa~aY~aLs~ae~ql~~g~---~~eAa~s~r~AM~~srtiP~eEaF-Dh----~GFDA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 4 KEVAMAYMALSDAERQLQDGA---YEEAAASCRKAMEVSRTIPAEEAF-DH----DGFDAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHTTS-TTS----H----HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhccCChHhhc-cc----ccHHHHHHHHHHHHHHhhccHHHHH
Confidence 3445556655 334455566 999999999999985554432211 11 2233557888899999999999877
Q ss_pred HHHHHHHccCC-------CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 296 KCVRVLREGSF-------DGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 296 ~~l~~a~~~~~-------~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
...+.++-++. +.++.+..+.|.+...+-.+|+.++|+..+++.
T Consensus 76 ~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 76 QSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 66655554332 112333345599999999999999999998753
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.21 E-value=36 Score=39.88 Aligned_cols=258 Identities=14% Similarity=0.124 Sum_probs=137.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCC
Q 004720 230 SALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGG 309 (733)
Q Consensus 230 ~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~ 309 (733)
..+..|+ +.+-+.-|++|..-. +|.-. +| +. ...|..+|..|-..|+.+.|...++.+.+.+-...
T Consensus 356 V~l~e~~---~~~~i~tyteAv~~v--dP~ka---~G----s~--~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 356 VKLYEGN---AAEQINTYTEAVKTV--DPKKA---VG----SP--GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred hhhhcCC---hHHHHHHHHHHHHcc--CcccC---CC----Ch--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 3345566 677777777776641 22111 12 11 23788899999999999999999999987431000
Q ss_pred CCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHH
Q 004720 310 DHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVR 389 (733)
Q Consensus 310 ~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~ 389 (733)
+.=..++..=++.-+...+++.|...+++...-|.++. + . |++++.+.-....+.+ ..+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-~-----~-~yd~~~pvQ~rlhrSl------------kiW-- 480 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-L-----E-YYDNSEPVQARLHRSL------------KIW-- 480 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-h-----h-hhcCCCcHHHHHHHhH------------HHH--
Confidence 00011223333444455677777777666654333332 1 1 2222111111111100 000
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 390 MAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 390 ~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
..+. |-.+++ +... .....++++.++-- +-..+.-|.|.-+.+.+-|++|.+.|+++..+
T Consensus 481 --s~y~------DleEs~-gtfe--stk~vYdriidLri---------aTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 481 --SMYA------DLEESL-GTFE--STKAVYDRIIDLRI---------ATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred --HHHH------HHHHHh-ccHH--HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 0000 000000 0000 00002333333211 11234447888888999999999999999987
Q ss_pred CC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHH-HhcCCHHHHHHHHHHHHhccC
Q 004720 470 LP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP--NIASAFLKFKIY-LQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 470 ~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp--~~~t~~~~~ki~-l~~gd~e~Al~~l~~~~~~~~ 545 (733)
++ ++.- +.=..|---..--.+-..+++|...|++|+...| +..|.|+.|-.. -.-|-...|+..|+......+
T Consensus 541 Fk~p~v~---diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 541 FKWPNVY---DIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred CCCccHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 75 3321 1112222222234556789999999999999888 677777765443 344677788888888766554
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.98 E-value=32 Score=38.94 Aligned_cols=135 Identities=18% Similarity=0.081 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--C--h
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYL---PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP--N--I 514 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~---~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp--~--~ 514 (733)
++-+....-.-.|+|.+|++-........ |..---+...+.+..-+|+.-..-+.|+.|...|.+|.++-. + .
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 33345555677899999987666555422 210000234567788888888888999999999999987744 3 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-------TDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-------~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+.+.+.+-+|++.|+-+.--+.++.+.-...++ ..++..-+-++...++...+..-|..-++
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 567788999999888776666665555433221 13666666777888888887766666665
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.14 Score=54.73 Aligned_cols=101 Identities=16% Similarity=0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
+.++....-.+-..+..|+++.|+..|+.|+++-+.+ -.++.-|+.+++..++...|+++|.+|..
T Consensus 111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~--------------a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL--------------AILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch--------------hhhcccccceeeeccCCchhhhhhhhhhc
Confidence 3344444455666677777777777777777765421 12333557777788888888888888888
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+.|++.+. |--.|...-..|+ .++|.+.|..+.++
T Consensus 177 in~Dsa~~-------ykfrg~A~rllg~---~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 177 INPDSAKG-------YKFRGYAERLLGN---WEEAAHDLALACKL 211 (377)
T ss_pred cCcccccc-------cchhhHHHHHhhc---hHHHHHHHHHHHhc
Confidence 87776554 4445666667777 78888877777776
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.2 Score=43.80 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHhhCC
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL-----------IDRAQEYITEAEKLEP 512 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~-----------~~~A~e~~~~A~~ldp 512 (733)
.-|++|+.-|+.||.+.|. ....+.++|.+|..++. |++|.++|++|...+|
T Consensus 49 ~miedAisK~eeAL~I~P~-------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPN-------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999999999874 44678999999988853 7777778888888888
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.42 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPF 472 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~ 472 (733)
+++.|..++..|+|+.|+.+|+.++...|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 456899999999999999999999987663
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.57 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+.++.++|.+|...|++++|.+++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 567899999999999999999999998776
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.73 Score=32.99 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
+..+.++|..+...|+ +++|..++++++++.++-
T Consensus 2 a~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGR---YEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT----HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhh---cchhhHHHHHHHHHHHHH
Confidence 5678999999999999 999999999999996653
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.47 Score=32.18 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPF 472 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~ 472 (733)
+++.|..+++.|++++|++.|+..+.-+|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 567999999999999999999999988874
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.87 E-value=2.3 Score=41.90 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCC-------CCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 196 QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNET-------NSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 196 ~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~-------~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
|+.|...++.....+|.+++ .+++-|..++...+- ..+++|+.-|++|+.| +|.
T Consensus 7 FE~ark~aea~y~~nP~Dad-------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~--------- 67 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD-------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPN--------- 67 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT---------
T ss_pred HHHHHHHHHHHHHhCcHhHH-------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCc---------
Confidence 55677778887777777554 466666655554221 1167777777777777 442
Q ss_pred hhhhcHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHc
Q 004720 269 ELKGLKFKTLRFISAIHLQKG-----------EYESVIKCVRVLRE 303 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~-----------~~ekAl~~l~~a~~ 303 (733)
+..++..+|++|...+ .|++|..|++.+..
T Consensus 68 -----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 68 -----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp ------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 3448889999987653 37777777777766
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.67 E-value=4 Score=43.21 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=73.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhhC-CChHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA-EKLE-PNIASAFLKFKI 523 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A-~~ld-p~~~t~~~~~ki 523 (733)
.+......|++.+|...|..++...|.+ +.+..-++.||+..|+.+.|..++... .+.. +.....--....
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 6778889999999999999999987754 356788999999999999999998742 1111 112220111233
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+.+..+..+.......+..-+ .+++.=...+......|..+.| |+.|+.....|
T Consensus 213 l~qaa~~~~~~~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~A---le~Ll~~l~~d 266 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADP-DDVEAALALADQLHLVGRNEAA---LEHLLALLRRD 266 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhc
Confidence 333344433333333333332 2444323333444446666665 55555544443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.44 E-value=68 Score=39.03 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=86.0
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
-.++|+.|..+.+++...... .+..............+|-++...|++++|+.....+....|.... ..-...
T Consensus 427 s~~r~~ea~~li~~l~~~l~~-----~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~--~~r~~~ 499 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKA-----PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY--RSRIVA 499 (894)
T ss_pred HccChHHHHHHHHHHHHHhCc-----CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc--hhhhhh
Confidence 456666666666655544431 1111222223356667788999999999999999999988775332 122334
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG--EYESVIKCVRVL 301 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~--~~ekAl~~l~~a 301 (733)
+...|....-+|+ +.+|..+.+++.++..+-... .+-.-+....+.+...+| .+......++..
T Consensus 500 ~sv~~~a~~~~G~---~~~Al~~~~~a~~~a~~~~~~-----------~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 500 LSVLGEAAHIRGE---LTQALALMQQAEQMARQHDVY-----------HLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred hhhhhHHHHHhch---HHHHHHHHHHHHHHHHHcccH-----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5578999999999 999999999999985542111 111112222355666777 344444555555
Q ss_pred Hc
Q 004720 302 RE 303 (733)
Q Consensus 302 ~~ 303 (733)
..
T Consensus 566 ~~ 567 (894)
T COG2909 566 RE 567 (894)
T ss_pred HH
Confidence 54
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.40 E-value=15 Score=41.62 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
.|..+-+.|+.++|++.|+.-++.+|.+ +.--+..|+..|++.++.|.++...+.+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 5666678899999999999988777633 3445889999999999999999998887543
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.37 E-value=40 Score=36.29 Aligned_cols=49 Identities=27% Similarity=0.190 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 477 RILRAKSFRVLCLCYLGL------SLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 477 ~~~~akl~r~la~cyl~l------~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
....++++..+|.....+ ++.+.+...|.+|.+++| .....+..+..+.
T Consensus 248 ~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 248 KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 357889999999988888 999999999999999999 5555555444443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=88.37 E-value=8.9 Score=40.74 Aligned_cols=134 Identities=13% Similarity=0.018 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 004720 484 FRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQ-KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC 561 (733)
Q Consensus 484 ~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~-~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~ 561 (733)
+..+.....+.+..+.|..+|.+|.+..+ ........+.+-.. .+|.+.|.+.++...+....++++...-+...+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 33444455555669999999999986555 45555555666444 67777799999999999888999888888888999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 004720 562 QALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 562 ~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~ 622 (733)
++..-+...|+..+.....+ .+.-.+....|.+= ...|+.+.+.+..+++.+.+++
T Consensus 84 ~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE-~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKE----KQSKKIWKKFIEFE-SKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHH-HHHS-HHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhh
Confidence 99999998888888854333 11223332222222 2247888888888888887655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.12 E-value=2 Score=36.40 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=48.5
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
.+.....-|.-++.+.+ ..+|+.-.+++++-... .+-++.++-.|+++|.++|.|++.+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~---~~~Al~~W~~aL~k~~~--------------~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNE---TQQALQKWRKALEKITD--------------REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHhccch---HHHHHHHHHHHHhhcCC--------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667888888888 89999999999987332 224888999999999999999998866
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.7 Score=38.08 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhh--hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENR--ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~--~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
.....|||..|++-+.....+........ ....-...+++..+...|++++|.+.+++|+++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35688999999999999887654332110 1345567889999999999999999999998873
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.4 Score=49.66 Aligned_cols=90 Identities=12% Similarity=-0.038 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWE---VLEQNLAITLL 203 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~---~g~~~~A~~~~ 203 (733)
.+...|+.+++.|+..+..+....|+..|.+|+..++.. .-+|+.||+++++ .|+.-.|+.++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~--------------~~~l~nraa~lmkRkW~~d~~~AlrDc 434 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA--------------IYLLENRAAALMKRKWRGDSYLALRDC 434 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch--------------hHHHHhHHHHHHhhhccccHHHHHHhH
Confidence 345668999999999999999999999999999876521 2467788888874 37888999999
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHhHH
Q 004720 204 NRAKCLLFGLFEHYKSLANQYLTFAKS 230 (733)
Q Consensus 204 ~rA~~l~~~~~~~~~~La~~~~~~G~~ 230 (733)
..|+.++|..-+.+.+|++.+..+++.
T Consensus 435 h~Alrln~s~~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 435 HVALRLNPSIQKAHFRLARALNELTRY 461 (758)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHhhH
Confidence 999999998888888888888888774
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.82 E-value=63 Score=37.92 Aligned_cols=254 Identities=16% Similarity=0.085 Sum_probs=133.1
Q ss_pred ccCHHHHHHHHHHHHhh----h-hcCchhHHHHHHHHHHHhHHHHhcC-----CCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 193 VLEQNLAITLLNRAKCL----L-FGLFEHYKSLANQYLTFAKSALSKN-----ETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l----~-~~~~~~~~~La~~~~~~G~~~~~~~-----~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
..|++.|+.++.++..- . ...|. ..+.+|..++... + ++.|.++|.+|-+. +. .
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~-------a~~~lg~~Y~~g~~~~~~d---~~~A~~~~~~aA~~---g~--~- 325 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPP-------AQYGLGRLYLQGLGVEKID---YEKALKLYTKAAEL---GN--P- 325 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCc-------cccHHHHHHhcCCCCcccc---HHHHHHHHHHHHhc---CC--c-
Confidence 35888999999999761 1 11222 3666777766643 4 78899999999887 32 1
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccC---cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhc----CChHHHHHH
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKG---EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGL----GRYNEAELE 335 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~---~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~----g~~deAi~~ 335 (733)
. ...+|+.+|..-. ++.+|.+++..+-+ .-|+.+.+-...++... .+...|...
T Consensus 326 ---~----------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 326 ---D----------AQYLLGVLYETGTKERDYRRAFEYYSLAAK------AGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred ---h----------HHHHHHHHHHcCCccccHHHHHHHHHHHHH------cCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 1 5567788886543 67899999998876 23556555555555544 256788888
Q ss_pred HHHhhhccCCchHH-HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECI-WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV 414 (733)
Q Consensus 336 l~~~l~~~~~~~~~-~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l 414 (733)
+.+..... .+... -+..+..|.......++-.+. ...-++...+....+..+...-. ...++....-..++..+
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~~~~~~~~~~~~--~~a~~g~~~~q~~a~~l~~~~~~--~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGVGRYDTALALYL--YLAELGYEVAQSNAAYLLDQSEE--DLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHccccccHHHHHHH--HHHHhhhhHHhhHHHHHHHhccc--cccccccccchhHHHHH
Confidence 87665322 22222 222333333211111111111 11111111111111111111100 11111000000000000
Q ss_pred HHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH
Q 004720 415 AELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS----KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC 490 (733)
Q Consensus 415 ~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~----~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c 490 (733)
- ......|+... .-+.|..+|.- .+++.|..+|..+-+- . ++...|++.+
T Consensus 462 ~-------~~a~~~g~~~a---------~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~---------~-~~~~~nlg~~ 515 (552)
T KOG1550|consen 462 Y-------SRAAAQGNADA---------ILKLGDYYYYGLGTGRDPEKAAAQYARASEQ---------G-AQALFNLGYM 515 (552)
T ss_pred H-------HHHHhccCHHH---------HhhhcceeeecCCCCCChHHHHHHHHHHHHh---------h-hHHHhhhhhH
Confidence 0 00000011110 11256666544 5799999999998653 2 6778999999
Q ss_pred HHhC---CCHHHHHHHHHHHHhhCC
Q 004720 491 YLGL---SLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 491 yl~l---~~~~~A~e~~~~A~~ldp 512 (733)
|..- ..+..|+.++.++.+.+.
T Consensus 516 ~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 516 HEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred HhcCcCcchhHHHHHHHHHHHhcCc
Confidence 8754 338899999999888776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.92 E-value=73 Score=37.72 Aligned_cols=197 Identities=16% Similarity=0.059 Sum_probs=109.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
.||+..--.|+|++|...|-.+..-+ ||.-++ .+.|| +-+.++++..+.++..
T Consensus 739 q~aei~~~~g~feeaek~yld~drrD---------LAielr------~klgD----------wfrV~qL~r~g~~d~d-- 791 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRD---------LAIELR------KKLGD----------WFRVYQLIRNGGSDDD-- 791 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhh---------hhHHHH------Hhhhh----------HHHHHHHHHccCCCcc--
Confidence 35677777788888888775554322 111111 23455 3356677665433321
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
.+.+-..+|+++..+.+.-.++.|.++|.+.... -..++||+.+..|++-+...+.+ ++
T Consensus 792 ------D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ecly~le~f~~LE~la~~L---pe 850 (1189)
T KOG2041|consen 792 ------DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQIECLYRLELFGELEVLARTL---PE 850 (1189)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHHHHHHHHHhhhhHHHHHHhc---Cc
Confidence 3445568999999999999999999999877431 23478888888888755554433 22
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERV 423 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v 423 (733)
+.+ +.--++..+...+. +.|.+++-+ +..| ++|+...-++ .+ | +++..+.+-
T Consensus 851 ~s~-llp~~a~mf~svGMC~qAV~a~Lr-------~s~p--kaAv~tCv~L-----nQ-----W-~~avelaq~------ 903 (1189)
T KOG2041|consen 851 DSE-LLPVMADMFTSVGMCDQAVEAYLR-------RSLP--KAAVHTCVEL-----NQ-----W-GEAVELAQR------ 903 (1189)
T ss_pred ccc-hHHHHHHHHHhhchHHHHHHHHHh-------ccCc--HHHHHHHHHH-----HH-----H-HHHHHHHHh------
Confidence 221 11224455544444 445444432 1222 2222211111 00 1 122111111
Q ss_pred HHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004720 424 LALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKS 466 (733)
Q Consensus 424 ~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~a 466 (733)
+ .++.+.+++=+.+..+...++.-+||+.+++|
T Consensus 904 ------~----~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 904 ------F----QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ------c----cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 0 13445556666788888889999999999987
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=86.71 E-value=3.6 Score=36.03 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=54.3
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCc--hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLF--EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~--~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
..+|..||+..|++.+.+..+...... .........+.++|..+...|+ +++|+..+++|+.+..+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~---~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH---YEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998865422 2123466678889999999999 999999999999996653
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=86.00 E-value=4.7 Score=44.48 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCCCCChHH----HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH--HhhccCCCh-HHHHHHH
Q 004720 108 RHVAADLLSLAADVSGIPSPA----IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK--LDISRISDS-DERKLLL 180 (733)
Q Consensus 108 R~~a~~ll~~~~~~~~~~~~~----~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~--~~~~~~~~~-~e~~~~l 180 (733)
++--|+-..++.+.++++... -+-...+++-|..+++.|+|..|..-|..|.+++++ ....+.+++ ++..-+-
T Consensus 148 ~q~tc~~ae~~d~ls~~~~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~va 227 (569)
T PF15015_consen 148 SQPTCQAAEIVDPLSAPNFSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVA 227 (569)
T ss_pred CCCccccccccCCCCCCCcccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHH
Confidence 333344444443333333333 344578999999999999999999999999999984 222333332 2322222
Q ss_pred HHHH-HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004720 181 DINI-ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQY 224 (733)
Q Consensus 181 ~~l~-~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~ 224 (733)
...+ --+.+|+..++.+.|+.-..|++.+.|..+.-+...|.+.
T Consensus 228 SfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf 272 (569)
T PF15015_consen 228 SFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF 272 (569)
T ss_pred HHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH
Confidence 2333 2378899999999999999999999998664444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.20 E-value=45 Score=36.19 Aligned_cols=167 Identities=8% Similarity=-0.094 Sum_probs=104.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
++..|..|++-+|-...+|.++-.|..--..+.-++++++.|.. ......+++.+..- ++ +
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~----------~~~k~ai~kIip~w--n~-------d 170 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ----------IGKKNAIEKIIPKW--NA-------D 170 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch----------hhhhhHHHHhcccc--CC-------C
Confidence 66778999999999999999887776443445566677766653 33333344433321 11 1
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh---hcc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV---EIK 343 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l---~~~ 343 (733)
.+.-.=+.-..+.++.+.|-|++|.+.-+.+.++ +..+.++..-+..++...|++.|+.+.+...= ...
T Consensus 171 ----lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s 242 (491)
T KOG2610|consen 171 ----LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS 242 (491)
T ss_pred ----CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh
Confidence 0111112233477888999999999999999998 56788888999999999999999988865321 000
Q ss_pred C--CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCC
Q 004720 344 G--IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 344 ~--~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~ 381 (733)
. ..-+.| -.+-++.+... +.+++.+++-+...+.+.+
T Consensus 243 ~mlasHNyW-H~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 243 WMLASHNYW-HTALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred hHHHhhhhH-HHHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 0 001112 22333444433 6777777766555554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=84.28 E-value=31 Score=36.65 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCC-Ch--HHHHHHHHHHHhcCC
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG-LSLIDRAQEYITEAEKLEP-NI--ASAFLKFKIYLQKND 529 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~-l~~~~~A~e~~~~A~~ldp-~~--~t~~~~~ki~l~~gd 529 (733)
+..+.|-..|..|+...+.. -.+|...|.--.. .++.+.|..+|+.+++.-| ++ ...|..|. +..||
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~-------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l--~~~~d 85 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCT-------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL--IKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS--------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH--HHTT-
T ss_pred CChHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHhCc
Confidence 33566666666665432212 1345555554333 4555556666666666555 32 33333333 34466
Q ss_pred HHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 530 QEGAINQILAMTICLDFTT---DFLSLAAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~---~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+.|...+++......... .+...=+..-.+.|+.+.+.+.-+...+.+
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666655443222 233333455555666655555555555533
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.31 E-value=1.1e+02 Score=36.47 Aligned_cols=363 Identities=14% Similarity=0.102 Sum_probs=181.2
Q ss_pred HHHHHHHHHhhhHHh-ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 129 IKSASFYFKTGVVWH-DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~-~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
.-.+...++.|+..+ ...|++.|...++||+..... .+=.+..+....+ .+.++-..+... |...+++++
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------~~~~d~k~~~~~l--l~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER------HRLTDLKFRCQFL--LARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------cchHHHHHHHHHH--HHHHHHhcCHHH-HHHHHHHHH
Confidence 335677888899988 899999999999999987642 1111111212222 255665655555 999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHH-HH-hcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKS-AL-SKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~-~~-~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y 285 (733)
+.....+...-.- ++.+-+. +. ..+| +..|+..++....+.... ++ ..++.-....-+.++
T Consensus 127 ~~~~~~~~~~w~~---~frll~~~l~~~~~d---~~~Al~~L~~~~~~a~~~-~d----------~~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 127 EDSETYGHSAWYY---AFRLLKIQLALQHKD---YNAALENLQSIAQLANQR-GD----------PAVFVLASLSEALLH 189 (608)
T ss_pred HHHhccCchhHHH---HHHHHHHHHHHhccc---HHHHHHHHHHHHHHhhhc-CC----------HHHHHHHHHHHHHHH
Confidence 8766533221111 1122211 11 1267 899999999998884421 11 222322333335556
Q ss_pred hccCcHHHHHHHHHHHHc----cCCCCCCCCCc---HH--HHHHHHHHhcCChHHHHHH---HHHhhh-ccCCc------
Q 004720 286 LQKGEYESVIKCVRVLRE----GSFDGGDHHAS---LP--VLAMKAWLGLGRYNEAELE---LRGMVE-IKGIP------ 346 (733)
Q Consensus 286 l~~~~~ekAl~~l~~a~~----~~~~~~~~~p~---~~--~lk~~il~~~g~~deAi~~---l~~~l~-~~~~~------ 346 (733)
+..+..+.+++.++.+.. ..-+... ++. ++ .+.+-+.+..|+++.+... +...+. ....+
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 666656666655554422 1001112 332 22 4444556666776644443 443331 11111
Q ss_pred hHHHH--hH--------H-HHHHHhchhhhHHHHHHHHHhhhccCCchH-------HHHHHHHHHhhcCCCCCcchHHHH
Q 004720 347 ECIWV--SA--------V-EAYFQAAGTAGAETAKGVFLGLLGRCHVSA-------KAAVRMAHRVAGDEGDGVSEAAVK 408 (733)
Q Consensus 347 ~~~~l--s~--------~-~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~-------~~a~~~l~~~l~~~~sp~~~~~l~ 408 (733)
.+..+ .. . .+.+.=-....+..+-..+..++.-.+... ..+.+.+++... ..++..+..+
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~-~~~~~~~~sl- 346 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI-KSPSAPSESL- 346 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc-cCCCCCCcCH-
Confidence 00000 00 0 000000001112222222222111111111 122222222210 0000000000
Q ss_pred HHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHH----HHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCchhhhhhH
Q 004720 409 LRAKAVAELVSDERVLALFVGDAAAKERIAMHA----VLWNCASILFRSKDYEASAEMFEKSMLYL---PFDVENRILRA 481 (733)
Q Consensus 409 ~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~----llW~~g~~~~k~~~y~~A~~~y~~aL~~~---~~~~~~~~~~a 481 (733)
. .......|... ++...+...+-.++|..|....+..-... |...- ..-..
T Consensus 347 ---------------~------~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~ 404 (608)
T PF10345_consen 347 ---------------S------EASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY-ESLYP 404 (608)
T ss_pred ---------------H------HHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh-hhhhH
Confidence 0 00111223222 33347888899999999999888765432 21110 13567
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHH--------HHHhhCC----ChHHHHHHHHHHHhcCCHHH----HHHHHHHHHh
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYIT--------EAEKLEP----NIASAFLKFKIYLQKNDQEG----AINQILAMTI 542 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~--------~A~~ldp----~~~t~~~~~ki~l~~gd~e~----Al~~l~~~~~ 542 (733)
.+++-.|.++...|+++.|..+|. .+.+.++ .+...++++-|+...+.... +-+.++.+..
T Consensus 405 ~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 405 LLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 889999999999999999999998 4555555 24566677778776554322 4444544444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.82 E-value=56 Score=37.22 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=52.4
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 443 LWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 443 lW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|+ .|..+..+|+++.|.+.|.++-. +-.+..-|.-.|+-++=.+..+.|..... ....|
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----~n~af 409 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD---------------FSGLLLLYSSTGDREKLSKLAKIAEERGD----INIAF 409 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC---------------ccccHHHHHHhCCHHHHHHHHHHHHHccC----HHHHH
Confidence 677 78999999999999999988633 24556677777777666666655544322 23457
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~ 540 (733)
..++..||.++.++.+..-
T Consensus 410 ~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHc
Confidence 7777788888777666443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.59 E-value=69 Score=34.22 Aligned_cols=126 Identities=16% Similarity=0.065 Sum_probs=77.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
..+.-....|++..|...+..+.+..|.+.+ +..-++.+++..|+ .+.|. .++...|.+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-------~~~~la~~~l~~g~---~e~A~-------~iL~~lP~~~~~- 200 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSE-------AKLLLAECLLAAGD---VEAAQ-------AILAALPLQAQD- 200 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccch-------HHHHHHHHHHHcCC---hHHHH-------HHHHhCcccchh-
Confidence 3455667889999999999999999888654 45566677778888 66655 343334432210
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
. ++..++.-...+.......+.......+.. ++.++...+.....+...|++++|...+..+|+
T Consensus 201 -~-------~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 201 -K-------AAHGLQAQIELLEQAAATPEIQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred -h-------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 111111111222222222223334444444 456777778888999999999999999888874
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=82.28 E-value=5.3 Score=41.66 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 438 AMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 438 ~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
-...+.|..|..+|+.|+|+.|+++|+.+...+- .+.- .-...+...+..|+.++|+.+....++-+.
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~--~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWW--SLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3345778899999999999999999999976554 4543 467889999999999999999888877554
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=10 Score=40.15 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
|.-..+.+.++|+.|+...+..+.+.|.+.. -.|-+|..|.++|.+..|..+++--++..| .+.+...+-.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPY-------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3456788999999999999999999997753 358899999999999999999999999989 78777776666
Q ss_pred HHh
Q 004720 524 YLQ 526 (733)
Q Consensus 524 ~l~ 526 (733)
...
T Consensus 259 ~~l 261 (269)
T PRK10941 259 HSI 261 (269)
T ss_pred HHH
Confidence 543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.08 E-value=6.5 Score=45.12 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=78.4
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
-+|+-..|+.....|+..-|..... -.-++|...++-+-...|-..+..++.+.. +|.+.|.....++...|.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDV------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcc------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 4678888999999998877744321 257899999999999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHHHhccCCCh
Q 004720 531 EGAINQILAMTICLDFTT 548 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~ 548 (733)
++|++.++...+..+..|
T Consensus 693 ~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHHHhcCCCCh
Confidence 999999999998876655
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.87 E-value=4.6 Score=42.64 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
..-|++..-+..|+..|.+.+|++++++++++|| +-...+.+-.++...||.-.|++.|+.+....
T Consensus 277 ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 277 LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 3456778889999999999999999999999999 87788888889999999999999999887653
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.07 E-value=4.4 Score=48.03 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCChH-HHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--SLIDRAQEYITEAEKLEPNIA-SAFLKFK 522 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--~~~~~A~e~~~~A~~ldp~~~-t~~~~~k 522 (733)
.|+.+|+.++|..|---|..++.+.|.+ +.+.+-+..+.+.||..+ ++|.+++-.++-|+...|.+. +.+-+..
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~---~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKD---HHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheecccc---chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 7999999999999999999999999966 368899999999999876 689999999999999999544 4444566
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.|--.+..+-|++.+..+....+.+++
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 666667799999997666666454444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.68 E-value=3.3 Score=32.42 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
+++.||..+.+.|+|++|.++++.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 6788999999999999999999999985
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.35 E-value=11 Score=47.19 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 128 AIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 128 ~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
....+..+..+|...+-.|.+..|.+ .-+++.+....+..+. ++ .-.-+.+.|..+=..|+.+.|+....|+.
T Consensus 928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h-~~-----~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ 1000 (1236)
T KOG1839|consen 928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLH-PE-----VASKYRSLAKLSNRLGDNQEAIAQQRKAC 1000 (1236)
T ss_pred ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcc-hh-----HHHHHHHHHHHHhhhcchHHHHHhcccce
Confidence 44677888899999999999998888 7777777764342221 11 22455666888889999999999999988
Q ss_pred hhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 208 CLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 208 ~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
-+..+ ........+..|-++....+..++ ...|...+.++..+..-..+.. -+--+.+..++...+.
T Consensus 1001 ii~eR~~g~ds~~t~~~y~nlal~~f~~~~---~~~al~~~~ra~~l~~Ls~ge~---------hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 1001 IISERVLGKDSPNTKLAYGNLALYEFAVKN---LSGALKSLNRALKLKLLSSGED---------HPPTALSFINLELLLL 1068 (1236)
T ss_pred eeechhccCCCHHHHHHhhHHHHHHHhccC---ccchhhhHHHHHHhhccccCCC---------CCchhhhhhHHHHHHh
Confidence 77654 444455666777788877777777 8899999999998743221111 1112345667777888
Q ss_pred ccCcHHHHHHHHHHHHccC
Q 004720 287 QKGEYESVIKCVRVLREGS 305 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~ 305 (733)
..++++.|+++.+.+.+++
T Consensus 1069 ~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1069 GVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 2e-13
Identities = 98/652 (15%), Positives = 177/652 (27%), Gaps = 207/652 (31%)
Query: 6 ISSPDIRH---QSNGHDRLLAQLDSLIKQTENRSHTNPETLTTLASDIKQILTQLSQLAP 62
+S +I H + L +L+ + E E + L + K +++ +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQR 103
Query: 63 FSSNSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAV------ANLRHVAADLLS 116
S ++YI + RL+N + F+ Y V LR +L
Sbjct: 104 QPSMMTRMYIEQRD-RLYND-------------NQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 117 ----------------LAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATE 160
+A DV S ++ F + W +LK + E +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV--CLSYKVQCK-MDF--KIFWLNLKNCNSPETVLEMLQK 204
Query: 161 IVSKLD-------------ISRISDSDERK-------------LLLDINIARSRTAWEVL 194
++ ++D RI L+L N+ ++ AW
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NV-QNAKAWNAF 262
Query: 195 E---QNLAITLLNRAKCLLFGL-FEHYKSLANQYLTFAKSALSKNETNSL------NDAL 244
+ L T R K + L ++ L L+ +E SL
Sbjct: 263 NLSCKILLTT---RFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 245 KLMNEALE---LCEKGLGEARTREETTELKGL------KFKTLRFISAIHLQKGEYESVI 295
L E L + R+ K T+ S L+ EY +
Sbjct: 317 DLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 296 KCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNE----AELELRGMVEIKGIPECIWV 351
+ V H +L++ W + + + +L +VE K E
Sbjct: 376 DRLSVFPP------SAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVE-KQPKE---- 423
Query: 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRA 411
S + ++L L + + + A+ HR
Sbjct: 424 STISIP-------------SIYLEL--KVKLENEYAL---HR------------------ 447
Query: 412 KAVAELVSDERVLALFVGDAAAKER--------IAMHAVLWNCASILFRSKDYEASAEMF 463
+V + F D I H ++ ++ +F
Sbjct: 448 ----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----------LKNIEHPERMTLF 493
Query: 464 EKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKI 523
++L F R L K + + + N +K
Sbjct: 494 RM--VFLDF----RFLEQK------IRHDSTAWNASGSIL---------NTLQQLKFYKP 532
Query: 524 YLQKNDQ--EGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSN 573
Y+ ND E +N IL DFL + + + AL
Sbjct: 533 YICDNDPKYERLVNAIL----------DFLPKIEENLICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 2e-09
Identities = 94/633 (14%), Positives = 168/633 (26%), Gaps = 182/633 (28%)
Query: 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLE 195
F+TG H + D+ S FE A V D + D + +L ++
Sbjct: 9 FETGE--HQYQYKDILS-VFEDA--FVDNFDCKDVQDM-PKSIL------SKEEIDHIIM 56
Query: 196 QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCE 255
A++ R LF + F + L N L +K +
Sbjct: 57 SKDAVSGTLR----LFWTLLSKQE--EMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMT 109
Query: 256 KGLGEAR---------------TREET-TELKG--LKFKTLRFISAIHLQKGEYESVIKC 297
+ E R +R + +L+ L+ + + + I G ++ +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWV-A 167
Query: 298 VRVLR----EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353
+ V + D WL L N E L + ++ + W S
Sbjct: 168 LDVCLSYKVQCKMDFKIF-----------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 354 VEAYFQAAGTAGAETAKGVFLGLL-------------------------GRCHV------ 382
+ + + + LL C +
Sbjct: 217 SD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 383 ----SAKAAVRMAHRVAGDEGDGVSEA-AVKLRAKAVAELVSDERVLA-----LFVGDAA 432
+A H ++ L K + D + A
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 433 AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKS-FR------ 485
R W+ ++ + + + E S+ L ++ S F
Sbjct: 335 ESIRD--GLATWD----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 486 --VLCLCYLGL---------------SLIDRAQE---------YITEAEKLEP------- 512
+L L + + SL+++ + Y+ KLE
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 513 -----NIASAFLKFKIYLQKNDQ-------------EGAINQILAMTICLDFTTDFLSLA 554
NI F + DQ E L + LDF FL
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQK 506
Query: 555 -AHEAVACQALSVAVAALSNLLNFY----TSGKPMPTKEVVVLRTIVTILTQETGN--ES 607
H++ A A + L L FY P + ++ I+ L + N S
Sbjct: 507 IRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYER---LVNAILDFLPKIEENLICS 562
Query: 608 EVLKYMKRA-HARTSEIGANCFFGTEEAGRREQ 639
+ ++ A A I EEA ++ Q
Sbjct: 563 KYTDLLRIALMAEDEAI-------FEEAHKQVQ 588
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 52/424 (12%), Positives = 118/424 (27%), Gaps = 111/424 (26%)
Query: 128 AIKSASFYFKTGVVWHDLKKYDLASGCFEKATEI------------VSKLDISRISDSDE 175
++ + + G + A F A + L + + +
Sbjct: 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-- 79
Query: 176 RKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN 235
L D+ L+ + L R LL
Sbjct: 80 ---LPDLTKVIQ------LKMDFTAARLQRGHLLL------------------------- 105
Query: 236 ETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVI 295
+ L++A + L+ E + + + ++ + ++A G+Y + I
Sbjct: 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA--FGSGDYTAAI 163
Query: 296 KCV-RVLREGSFDGGDHHASLPVLAMKA--WLGLGRYNEAELELRGMVEIKGIPECIWVS 352
+ ++L + ++A ++ G +A +L+ ++K +
Sbjct: 164 AFLDKILEVCV-------WDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDN---- 210
Query: 353 AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAK 412
EA+++ LG H + + VR ++ D + +
Sbjct: 211 -TEAFYK----------ISTLYYQLGD-HELSLSEVRECLKLDQD-----HKRCFAHYKQ 253
Query: 413 AVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF 472
E A L R Y + +E +
Sbjct: 254 VKKLNKLIES------------------------AEELIRDGRYTDATSKYESV---MKT 286
Query: 473 DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFL-KFKIYLQKNDQE 531
+ +S +C C+ A +E ++EP+ +A + + YL + +
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346
Query: 532 GAIN 535
AI
Sbjct: 347 EAIQ 350
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 42/229 (18%)
Query: 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKL--DISRISDSDERKLLLDINIARS-- 187
A F+FK ++ +K+ ++ +A +I R S IA +
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS-------LFVIAGNYD 193
Query: 188 -----RTAWEVLEQNLAI------------TLLNRAKC-LLFGLFEHYKSLANQYLTFAK 229
A LE L + +LLN A G + + ++
Sbjct: 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253
Query: 230 SALSKNETNSLN------DALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISA 283
+ L +A + E+GL R + F+ A
Sbjct: 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK-----ELFLFLQA 308
Query: 284 IHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEA 332
++ + + + + + + A A + + +A
Sbjct: 309 VYKETVDERKIHDLLSYFEKKNLH-AYIEACARSAA-AVFESSCHFEQA 355
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 24/166 (14%), Positives = 56/166 (33%), Gaps = 22/166 (13%)
Query: 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAW 191
A F+FK ++ +K+ + +A EI + + R L A +
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE-----HEAYNIRLLQCHSLFATNFLDL 197
Query: 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEAL 251
+ E AI+ +A + + + + S+++ DA+ A+
Sbjct: 198 KQYED--AISHFQKAYS-MAEAEKQPQLMGRTLYNIGLCKNSQSQ---YEDAIPYFKRAI 251
Query: 252 ELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297
+ E+ + + + I+ IH + G+ + +
Sbjct: 252 AVFEE-----------SNILPSLPQAYFLITQIHYKLGKIDKAHEY 286
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 9e-04
Identities = 14/83 (16%), Positives = 31/83 (37%)
Query: 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504
A+I + + ++FE+ + L +N K S + + +
Sbjct: 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219
Query: 505 TEAEKLEPNIASAFLKFKIYLQK 527
+A ++ I S L ++Y Q+
Sbjct: 220 NKAIEISCRINSMALIGQLYYQR 242
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.75 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.75 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.56 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.55 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.5 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.36 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.36 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.32 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.32 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.32 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.28 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.2 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.18 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.15 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.15 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.13 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.13 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.1 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.1 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.1 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.08 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.06 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.05 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.04 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.04 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.03 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.01 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.99 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.99 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.97 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.96 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.95 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.94 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.92 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.87 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.87 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.85 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.83 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.81 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.81 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.78 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.77 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.72 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.69 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.6 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.53 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.53 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.43 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.34 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.27 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.2 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.2 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.2 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.18 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.09 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.07 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.94 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.92 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.86 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.84 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.75 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.23 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.22 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.14 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.0 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.06 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.05 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.73 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 95.63 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.58 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.57 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.9 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.68 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.55 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.54 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.82 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.06 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.0 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.37 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.88 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 86.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.85 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 83.37 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 83.17 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=219.20 Aligned_cols=363 Identities=12% Similarity=0.024 Sum_probs=277.3
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchh
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEH 216 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~ 216 (733)
..|+.++..|+++.|...|+++++..|. . ..++...+.++...|+++.|+.+++++....|..+.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~--------~------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~- 68 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPD--------N------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE- 68 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-
Confidence 4578889999999999999998876431 1 134445577888999999999999999998887553
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHH
Q 004720 217 YKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIK 296 (733)
Q Consensus 217 ~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~ 296 (733)
.++++|..+...|+ +++|+..|++++.+ +|.+ ..++..++.+|...|++++|+.
T Consensus 69 ------~~~~lg~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 69 ------AYSNLGNVYKERGQ---LQEAIEHYRHALRL---KPDF--------------IDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp ------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHHSCSSHHHH
T ss_pred ------HHHHHHHHHHHCCC---HHHHHHHHHHHHHc---Ccch--------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 58888999999999 99999999999998 4422 1268889999999999999999
Q ss_pred HHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 297 CVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 297 ~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
+++.+.+. ++..+......+.++...|++++|+..+..++...|.....+...+..|...+. +.|...+++++.
T Consensus 123 ~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 197 (388)
T 1w3b_A 123 AYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT- 197 (388)
T ss_dssp HHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 99988886 456677778889999999999999999999886666666667777777776665 666666665432
Q ss_pred hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC
Q 004720 376 LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD 455 (733)
Q Consensus 376 ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~ 455 (733)
..|++...+...+.........+.....+. +.....+.....+.+.|..+++.|+
T Consensus 198 -----------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 198 -----------------------LDPNFLDAYINLGNVLKEARIFDRAVAAYL--RALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp -----------------------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 233333333333333322222222222221 0000001112234458999999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al 534 (733)
|++|+++|+.++...|.+ ..++.+++.+|.+.|++++|++.++++++++| ++.+.+.+..++...|++++|+
T Consensus 253 ~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHHHHHHHHHHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987754 35689999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 535 NQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
+.++++....+.++.....-+....+.|+.+.|+..++..++.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999887766765555566777889999999999988883
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=206.92 Aligned_cols=335 Identities=15% Similarity=0.126 Sum_probs=261.7
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......|..++..|+++.|..+|+++++..|. . ...+...+.++...|+++.|+..++++..+.|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 68 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------N------YIAYYRRATVFLAMGKSKAALPDLTKVIALKM 68 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--------c------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999999986431 1 24666778999999999999999999999988
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC---CCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL---GEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~---~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
..+ .+++.+|..+...|+ +++|+.+|++++++ .| .+......... -.....+..+|.+|...
T Consensus 69 ~~~-------~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 69 DFT-------AARLQRGHLLLKQGK---LDEAEDDFKKVLKS---NPSEQEEKEAESQLVK--ADEMQRLRSQALDAFDG 133 (359)
T ss_dssp TCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHTS---CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred Ccc-------hHHHHHHHHHHHcCC---hHHHHHHHHHHHhc---CCcccChHHHHHHHHH--HHHHHHHHHHHHHHHHc
Confidence 765 357888999999999 99999999999987 43 11110000000 00122445568999999
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHH
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAE 367 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~ 367 (733)
|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...+.....+...+.+|...+. +.|.+
T Consensus 134 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 134 ADYTAAITFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp TCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999886 456788889999999999999999999999986666666677777887776665 55555
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHH
Q 004720 368 TAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCA 447 (733)
Q Consensus 368 ~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g 447 (733)
.++++ + +..|+++..+.. +... ......+..|
T Consensus 210 ~~~~a----------------------~--~~~~~~~~~~~~----~~~~--------------------~~~~~~~~~a 241 (359)
T 3ieg_A 210 EVREC----------------------L--KLDQDHKRCFAH----YKQV--------------------KKLNKLIESA 241 (359)
T ss_dssp HHHHH----------------------H--HHCTTCHHHHHH----HHHH--------------------HHHHHHHHHH
T ss_pred HHHHH----------------------H--hhCccchHHHHH----HHHH--------------------HHHHHHHHHH
Confidence 55533 2 234444332200 0000 0011234579
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHh
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQ 526 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~ 526 (733)
..+++.|+|++|+++|+.++...|.+. .....++..++.+|.+.|++++|+++++++++.+| ++...+.+..++..
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999988764 35567789999999999999999999999999999 89999999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCChHH
Q 004720 527 KNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 527 ~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.|++++|+++++++.+..+.+++.
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999987776663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-21 Score=210.44 Aligned_cols=341 Identities=12% Similarity=-0.014 Sum_probs=258.6
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|..++..|+++.|..++++|+...|. . ...+...+.++...|++++|+..++++..+.|..+
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--------L------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------c------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 345678888999999999999999876431 1 24566678888999999999999999999988765
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekA 294 (733)
. .++++|..+...|+ +++|+..|++++++ +|... .++..++.+|...|++++|
T Consensus 102 ~-------~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~p~~~--------------~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 102 D-------GYINLAAALVAAGD---MEGAVQAYVSALQY---NPDLY--------------CVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp H-------HHHHHHHHHHHHSC---SSHHHHHHHHHHHH---CTTCT--------------HHHHHHHHHHHTTSCHHHH
T ss_pred H-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCcH--------------HHHHHHHHHHHHccCHHHH
Confidence 3 47888999999999 99999999999988 54221 2677889999999999999
Q ss_pred HHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHH
Q 004720 295 IKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVF 373 (733)
Q Consensus 295 l~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l 373 (733)
+.+++.+.+. .+.++.+++..+.++...|++++|+..+.+++...|.....+...+.++...+. +.|...+++.+
T Consensus 155 ~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 155 KACYLKAIET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888875 356677778889999999999999999999886666666667777777776665 56666655432
Q ss_pred HhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc
Q 004720 374 LGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS 453 (733)
Q Consensus 374 ~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~ 453 (733)
+.+|++...+...+.........+..++.+. +.....+.....+.+.|..+.+.
T Consensus 231 ------------------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 231 ------------------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp ------------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHTCSSCHHHHHHHHHHHHHH
T ss_pred ------------------------hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHc
Confidence 2233333333333333333333333333322 11110011122455689999999
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEG 532 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~ 532 (733)
|+|++|+++|+.++...|.+ ...+.+++.+|...|++++|++.++++++++| ++.+.+.+..++...|++++
T Consensus 285 g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred CCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999987754 35789999999999999999999999999999 88899999999999999999
Q ss_pred HHHHHHHHHhccCCChHHHHH
Q 004720 533 AINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 533 Al~~l~~~~~~~~~~~~lL~l 553 (733)
|++.++.+....+..++.+..
T Consensus 358 A~~~~~~a~~~~p~~~~a~~~ 378 (388)
T 1w3b_A 358 ALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHh
Confidence 999999999987766664443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-21 Score=211.06 Aligned_cols=407 Identities=14% Similarity=0.107 Sum_probs=291.0
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..++..|+++.|..+|+++++..+. . ...+..++.++...|++++|+.+++++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------N------YIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--------c------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3456777899999999999999999999976431 1 3456677889999999999999999999998
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc---ccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA---RTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~---~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
|..+ .+++.+|..+...|+ +++|+.+|++++++ .+.+. ....... .......+..+|.+|..
T Consensus 91 p~~~-------~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 91 MDFT-------AARLQRGHLLLKQGK---LDEAEDDFKKVLKS---NPSENEEKEAQSQLI--KSDEMQRLRSQALNAFG 155 (450)
T ss_dssp TTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHTS---CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCcH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CCCChhhHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 8765 357888999999999 99999999999887 44221 1000000 00112235667888999
Q ss_pred cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhH
Q 004720 288 KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGA 366 (733)
Q Consensus 288 ~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~ 366 (733)
.|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+..++...+.....+...+.+|...+. +.|.
T Consensus 156 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999886 456778889999999999999999999999986555556667777888877665 5666
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC 446 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~ 446 (733)
..++.+ + +..|++...+.. +..+.. + ....+.
T Consensus 232 ~~~~~~----------------------~--~~~p~~~~~~~~----~~~~~~---~-----------------~~~~~~ 263 (450)
T 2y4t_A 232 SEVREC----------------------L--KLDQDHKRCFAH----YKQVKK---L-----------------NKLIES 263 (450)
T ss_dssp HHHHHH----------------------H--HHCTTCHHHHHH----HHHHHH---H-----------------HHHHHH
T ss_pred HHHHHH----------------------H--HhCCChHHHHHH----HHHHHH---H-----------------HHHHHH
Confidence 666543 2 234444332210 000000 0 012347
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
|..+++.|+|++|+++|+.++...|.+. .....++.+++.+|.++|++++|+++++++++++| ++...+.++.++.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 9999999999999999999999888764 34578899999999999999999999999999999 8999999999999
Q ss_pred hcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH-HHhhcC
Q 004720 526 QKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTI-LTQETG 604 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l-~~~~~~ 604 (733)
..|++++|++.++.+....+.+++....-.......+.. ....+...++ .... .....+...+|....- .++...
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~~~~y~~lg-~~~~-~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS--QKRDYYKILG-VKRN-AKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--HSCCSGGGSC-SSTT-CCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc--cchhHHHHhC-CCcc-CCHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999998877776443332211111110 0001111111 1111 1245566777754322 244322
Q ss_pred Ch------hHHHHHHHHHHHHhhhccc
Q 004720 605 NE------SEVLKYMKRAHARTSEIGA 625 (733)
Q Consensus 605 ~~------~~~l~~~~~A~~~l~~~~~ 625 (733)
+. .+.++.+..|++.+++...
T Consensus 417 ~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 417 NEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 21 3367788999999887743
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-20 Score=208.70 Aligned_cols=388 Identities=11% Similarity=-0.029 Sum_probs=285.9
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
+.+......|+.+++.|+|+.|..+|++|++..| + ...+..++.+++..|+++.|+.++++++.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE---------D------PVFYSNLSACYVSVGDLKKVVEMSTKALEL 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---------c------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 4567788999999999999999999999998642 1 245667799999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc-h-----------------------
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR-E----------------------- 265 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~-~----------------------- 265 (733)
.|..+. +++.+|..+...|+ +++|+..|++++++ ++.+.... .
T Consensus 69 ~p~~~~-------~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (514)
T 2gw1_A 69 KPDYSK-------VLLRRASANEGLGK---FADAMFDLSVLSLN---GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135 (514)
T ss_dssp CSCCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHS---SSCCGGGTHHHHHHHHHHHHHHHHTTC------
T ss_pred ChHHHH-------HHHHHHHHHHHHhh---HHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987663 58889999999999 99999999999887 32111000 0
Q ss_pred ---------------------hhhhh--------------------hhcHHHHHHHHHHHHhc---cCcHHHHHHHHHHH
Q 004720 266 ---------------------ETTEL--------------------KGLKFKTLRFISAIHLQ---KGEYESVIKCVRVL 301 (733)
Q Consensus 266 ---------------------~~~~~--------------------~el~~~~l~~La~~yl~---~~~~ekAl~~l~~a 301 (733)
..+.. .+.....+..++.+++. .|++++|+.+++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ---------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00000 01114466777888776 89999999999888
Q ss_pred Hc-----c--CCCC---CCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHH
Q 004720 302 RE-----G--SFDG---GDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 302 ~~-----~--~~~~---~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
.+ . .++. .+.++..++..+.++...|++++|+..+...+...+. ...+...+..|...+. +.|...++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77 3 1100 0233456688999999999999999999998855555 6777788888887776 77777777
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASIL 450 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~ 450 (733)
+++ +..|++...+...+.........+.....+. +.....+.....+.+.|..+
T Consensus 295 ~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 295 KAL------------------------KLDSNNSSVYYHRGQMNFILQNYDQAGKDFD--KAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHH------------------------TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH--HHHHTCSSCSHHHHHHHHHT
T ss_pred HHh------------------------hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHhChhhHHHHHHHHHHH
Confidence 553 2223233333222222222222222222222 00000000112445689999
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH------HHHHHHHH
Q 004720 451 FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA------SAFLKFKI 523 (733)
Q Consensus 451 ~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~------t~~~~~ki 523 (733)
++.|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|.++++++++.+| ++. ..+.+..+
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999887754 35789999999999999999999999999988 543 78889999
Q ss_pred HHh---cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 524 YLQ---KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 524 ~l~---~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
+.. .|++++|++.++.+....+.+++.+...+......|+.+.|+..++..++..+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 999 99999999999999998887888777777888899999999999999999543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-19 Score=205.61 Aligned_cols=461 Identities=9% Similarity=-0.023 Sum_probs=316.3
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......++.+.+.|+++.|...|++++...+ +. ..+...+.++...|++++|+..++++...
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---------~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 146 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITG---------NP------NDAFWLAQVYCCTGDYARAKCLLTKEDLY- 146 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---------CH------HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC---------Cc------hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-
Confidence 345567788999999999999999999986542 11 12234688899999999999999998754
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc----cc-hhhhhhhhcHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR----TR-EETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~----~~-~~~~~~~el~~~~l~~La~~y 285 (733)
+..+ .+++.+|..+...|+ +++|...|++. .+.... .. .......+....++..++.+|
T Consensus 147 ~~~~-------~~~~~l~~~~~~~g~---~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 147 NRSS-------ACRYLAAFCLVKLYD---WQGALNLLGET------NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp GTCH-------HHHHHHHHHHHHTTC---HHHHHHHHCSS------CTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred ccch-------hHHHHHHHHHHHHhh---HHHHHHHHhcc------CCccccccccccccccccccchhHHHHHHHHHHH
Confidence 2333 257788999999999 99999877741 111100 00 000000122355899999999
Q ss_pred hccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH--------------------------------------HHHHHhcC
Q 004720 286 LQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA--------------------------------------MKAWLGLG 327 (733)
Q Consensus 286 l~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk--------------------------------------~~il~~~g 327 (733)
...|++++|+.+++.+.+. ++.++...... +..+.+.|
T Consensus 211 ~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMV----DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHcCCHHHHHHHHHHHHHh----CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999875 34444443332 22333557
Q ss_pred ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHH
Q 004720 328 RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAA 406 (733)
Q Consensus 328 ~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~ 406 (733)
++++|+..+..++..+ .....+...+..|...+. +.|...+++++. ..|++...
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~ 341 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLE-KSSDLLLCKADTLFVRSRFIDVLAITTKILE------------------------IDPYNLDV 341 (597)
T ss_dssp HHHHHHHHHHTSTTGG-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HCTTCCTT
T ss_pred hHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------------cCcccHHH
Confidence 8899999998887543 345556777888877776 667777765532 11212222
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHH
Q 004720 407 VKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRV 486 (733)
Q Consensus 407 l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~ 486 (733)
+...+..+......+...+.+. ...+........+...|..+++.|+|++|+++|+.++...|.+ ...+..
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 412 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISN--DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-------GPAWIG 412 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH--HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH--HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHH
Confidence 2112222222222222222222 1101001111233348999999999999999999999887654 357889
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHH
Q 004720 487 LCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 487 la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
++.+|.+.|++++|++.++++.+.+| ++.+.+.+..++.+.|++++|++.++.+....+.++..+..-+....+.|+.+
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999 88999999999999999999999999999888778887766677888899999
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHHhh
Q 004720 566 VAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVM 645 (733)
Q Consensus 566 ~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~~~ 645 (733)
.|+..++..++........|.....++.+++... ...|+.++.+.+++++...-++ +.. +
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~--------------~~~-----~ 552 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAY-RKLKMYDAAIDALNQGLLLSTN--------------DAN-----V 552 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSSC--------------CHH-----H
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCC--------------ChH-----H
Confidence 9999999998854321122443344444444443 3357888999999998865221 111 1
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHccccCCchhhh
Q 004720 646 SWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEEN 684 (733)
Q Consensus 646 awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~~~~~ 684 (733)
-+++|.-+...++++.+.++|.-+.+ +.|.+.....
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~ 588 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLA---ISPNEIMASD 588 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCChHHHH
Confidence 24666667778889999999988877 5777755433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-20 Score=207.29 Aligned_cols=370 Identities=12% Similarity=0.008 Sum_probs=262.7
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
......+......|+.+++.|+++.|..+|++|++..|. . ...+..++.++...|++++|+..+++
T Consensus 19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~------~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--------E------PVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--------C------cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444556788899999999999999999999999987541 1 25666778899999999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC-------------------------
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE------------------------- 260 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~------------------------- 260 (733)
+..+.|..+. +++.+|..+...|+ +++|+..|+ ++.+.......
T Consensus 85 al~~~p~~~~-------~~~~la~~~~~~g~---~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 153 (537)
T 3fp2_A 85 ALEIKPDHSK-------ALLRRASANESLGN---FTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153 (537)
T ss_dssp HHHHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhcCCchHH-------HHHHHHHHHHHcCC---HHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999888664 46677777777777 777777663 33210000000
Q ss_pred ---c------------------------------------------------------------------------ccch
Q 004720 261 ---A------------------------------------------------------------------------RTRE 265 (733)
Q Consensus 261 ---~------------------------------------------------------------------------~~~~ 265 (733)
. ...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 0000
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
..+......+.++..++.+|...|++++|+.+++.+.+.. +. +..++..+.++...|++++|+..+...+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH----PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Confidence 0011112234578889999999999999999999998863 33 677789999999999999999999999866666
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
...++...+.+|...+. +.|.+.+++++. ..|++...+...+.....+...+...
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------LNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66677788888877766 666666665432 23333333333444433333333333
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC----------
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL---------- 494 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l---------- 494 (733)
+.+. +.....+....++.+.|..+++.|+|++|+++|+.++...|.+... ......+.+++.+|...
T Consensus 365 ~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 365 AFFN--ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI-HVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHH--HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC-SSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHH--HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh-HHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 3333 1111011112234458999999999999999999999887754322 23344567888999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
|++++|+++++++++.+| ++...+.+..++...|++++|++.++.+....+..++.+.
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999 8999999999999999999999999999999877666433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-20 Score=203.89 Aligned_cols=364 Identities=12% Similarity=-0.009 Sum_probs=267.3
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+++.|..+|++|++..|. . ...+..++.++..+|++++|+.+++++..+.|.
T Consensus 40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 40 VFYSNLSACYVSVGDLKKVVEMSTKALELKPD--------Y------SKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--------H------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667799999999999999999999986431 1 256667789999999999999999999988764
Q ss_pred CchhHHH------------------------------------------------------------------------H
Q 004720 213 LFEHYKS------------------------------------------------------------------------L 220 (733)
Q Consensus 213 ~~~~~~~------------------------------------------------------------------------L 220 (733)
....... -
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (514)
T 2gw1_A 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE 185 (514)
T ss_dssp CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcH
Confidence 3221110 1
Q ss_pred HHHHHHHhHHHHh---cCCCCCHHHHHHHHHHHHHHHh----cCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 221 ANQYLTFAKSALS---KNETNSLNDALKLMNEALELCE----KGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 221 a~~~~~~G~~~~~---~~~~~~~e~A~~~l~~Alel~~----~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
...++..|..++. .|+ +++|+.+|+++++..+ +.+.+. ...+....++..+|.+|...|++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPES---YDKADESFTKAARLFEEQLDKNNEDE-------KLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTH---HHHHHHHHHHHHHHHHHHTTTSTTCH-------HHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHhhhhhccCcccc-------ccChHHHHHHHHHHHHHHHCCCHHH
Confidence 5667778888776 788 9999999999999522 222111 1123345689999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
|+.+++.+.+.. +. +..++..+.++...|++++|+..+...+...+.....+...+.+|...+. +.|...++.+
T Consensus 256 A~~~~~~~l~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 256 AHEDIKKAIELF----PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHC----CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhC----cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998863 34 77778999999999999999999999986666566677778888887766 6777777755
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
+. ..|++...+...+.........+...+.+. +.....+.....+++.|..+++
T Consensus 331 ~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 331 KE------------------------LDPENIFPYIQLACLAYRENKFDDCETLFS--EAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HH------------------------TCSSCSHHHHHHHHHTTTTTCHHHHHHHHH--HHHHHSTTCSHHHHHHHHHHHH
T ss_pred HH------------------------hChhhHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHcccCHHHHHHHHHHHHH
Confidence 32 122222222122222111111122222221 0000001112345568999999
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG---LSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~---l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
.|+|++|+++|+.++...|.+... ...+..+.+++.+|.. .|++++|+++++++++++| ++.+.+.+..++...|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGI-YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSC-SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 999999999999999887755321 2345689999999999 9999999999999999999 8899999999999999
Q ss_pred CHHHHHHHHHHHHhccCCChHHHH
Q 004720 529 DQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
++++|++.++.+....+.+++.+.
T Consensus 464 ~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 464 DIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999877666443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-18 Score=182.24 Aligned_cols=308 Identities=9% Similarity=-0.013 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+...+..+...|++++|+..++++....|..+. +++++|..+...|+ +++|+.+|++++++ .|.+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 70 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-------AYYRRATVFLAMGK---SKAALPDLTKVIAL---KMDF 70 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH-------HHHHHHHHHHHccC---HHHHHHHHHHHHHh---CCCc
Confidence 45667788999999999999999999999887653 58889999999999 99999999999998 4422
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCC---CCCcHHHHH------------HHHHHh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGD---HHASLPVLA------------MKAWLG 325 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~---~~p~~~~lk------------~~il~~ 325 (733)
..++..+|.+|...|++++|+.+++.+.+. .+ .++...+.. +.++..
T Consensus 71 --------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 71 --------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------chHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 137888999999999999999999999875 23 344444333 688999
Q ss_pred cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcch
Q 004720 326 LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSE 404 (733)
Q Consensus 326 ~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~ 404 (733)
.|++++|+..+...+...+....++...+.+|...+. +.|...++ +.+ +..|+++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~----------------------~~~--~~~~~~~ 188 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK----------------------AAS--KLKSDNT 188 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------------HHH--TTCSCCH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHH--HhCCCCH
Confidence 9999999999999986666666666777777766555 44444444 444 3455443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhh----
Q 004720 405 AAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILR---- 480 (733)
Q Consensus 405 ~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~---- 480 (733)
.. +.+.|..++..|+|++|+++|+.++...|.+.......
T Consensus 189 ~~------------------------------------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 189 EA------------------------------------FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HH------------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HH------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 22 22478899999999999999999999988664211000
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHH----HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 481 -AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIAS----AFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 481 -akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t----~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
......++.++...|++++|.+.++++++.+| ++.. .+.+..++...|++++|++.++.+....+.+++.+..-
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 11234669999999999999999999999999 5533 44578999999999999999999999888788877777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 555 AHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 555 ~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
+......|+.+.|+..++..++..+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7888899999999999999998443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-19 Score=201.53 Aligned_cols=415 Identities=11% Similarity=-0.001 Sum_probs=285.3
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE 215 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~ 215 (733)
...|..+...|+++.|...|++++..- ++ ...+...+.++...|++++|+..+++. .|....
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~ 182 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLYN---------RS------SACRYLAAFCLVKLYDWQGALNLLGET---NPFRKD 182 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGGG---------TC------HHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC--
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhccc---------cc------hhHHHHHHHHHHHHhhHHHHHHHHhcc---CCcccc
Confidence 458999999999999999998876421 11 235556688999999999999999863 232200
Q ss_pred ------------hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch------------------
Q 004720 216 ------------HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE------------------ 265 (733)
Q Consensus 216 ------------~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~------------------ 265 (733)
....-+.+++.+|..+...|+ +++|+.+|+++++. ++.+.....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp --------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHH
Confidence 001235678899999999999 99999999999987 443221000
Q ss_pred ------hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 266 ------ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 266 ------~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
..+........++..++..|...|++++|+..++.+.+. +.++..++..+.++.+.|++++|+..+..+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 000001111223444466777888999999999888763 356777899999999999999999999998
Q ss_pred hhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+...+.....+...+..|...+. +.|...++.++ +..|++...+...+....+..
T Consensus 332 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV------------------------DRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHCTTSHHHHHHHHHHHHHTT
T ss_pred HHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------hhCcccHHHHHHHHHHHHHhc
Confidence 85545455556667777776665 56666665443 112222222222222222222
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
..+...+.|. +...........+...|..+.+.|+|++|+++|+.++...|.+ ...+..++.+|.+.|+++
T Consensus 388 ~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 388 KISEARRYFS--KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-------HLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp CHHHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-------SHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCCHH
Confidence 2233333332 0000000111122348999999999999999999999887744 356889999999999999
Q ss_pred HHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCC----hHHHHHHHHHHHHcCCHHHHHHH
Q 004720 499 RAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL---DFT----TDFLSLAAHEAVACQALSVAVAA 570 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~---~~~----~~lL~la~~~a~~~~~~~~a~~a 570 (733)
+|.++++++++.+| ++.+.+.+..++.+.|++++|++.++.+.... +.+ +..+..-+....+.|+.+.|+..
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999 89999999999999999999999999998763 112 34555556777889999999999
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 004720 571 LSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHART 620 (733)
Q Consensus 571 L~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l 620 (733)
++.+++..+.+ + .++..+.. +....|+.++...+|+++.+.-
T Consensus 539 ~~~~~~~~p~~---~----~~~~~l~~-~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 539 LNQGLLLSTND---A----NVHTAIAL-VYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHSSCC---H----HHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCC---h----HHHHHHHH-HHHHhCCHHHHHHHHHHHHhcC
Confidence 99999854322 2 22212222 2344678889999999998753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-17 Score=188.66 Aligned_cols=473 Identities=12% Similarity=0.044 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
....+..++..+...|++++|+..|++++.+.|..+ ..++++|.++...|+ +++|+..|++++++ +|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~---~~~A~~~~~~al~~---~p 90 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-------VFYSNISACYISTGD---LEKVIEFTTKALEI---KP 90 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CC
Confidence 456788889999999999999999999999998866 358899999999999 99999999999998 54
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+ ..++..+|.+|...|++++|+..++.+ .. +|......+..+...+...+|+..+..
T Consensus 91 ~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (537)
T 3fp2_A 91 DH--------------SKALLRRASANESLGNFTDAMFDLSVL-SL-------NGDFDGASIEPMLERNLNKQAMKVLNE 148 (537)
T ss_dssp TC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHH-C------------------CHHHHHHHHHHHHHHHH
T ss_pred ch--------------HHHHHHHHHHHHHcCCHHHHHHHHHHH-hc-------CCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 32 127888999999999999999999744 32 222222223344444555677777766
Q ss_pred hhhccC-CchHH--HHhHHHHHHHhch-hhhHHH-------------HHHHHHhhhccCC-------chHHHHHHHHHHh
Q 004720 339 MVEIKG-IPECI--WVSAVEAYFQAAG-TAGAET-------------AKGVFLGLLGRCH-------VSAKAAVRMAHRV 394 (733)
Q Consensus 339 ~l~~~~-~~~~~--~ls~~~ly~~~~~-~~a~~~-------------lk~~l~~ll~~~~-------~~~~~a~~~l~~~ 394 (733)
++...+ ..... ....+..|..... ..++.. +...+..+..... .....++.++++.
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 653211 00000 0000111111000 000000 1111110000000 0135667777777
Q ss_pred hcCCCCCcchHHHHHHH-------HHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004720 395 AGDEGDGVSEAAVKLRA-------KAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSM 467 (733)
Q Consensus 395 l~~~~sp~~~~~l~~ka-------~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL 467 (733)
+ +..|+++..+...+ .........+.....+. ......+. ...+...|..++..|+|++|+++|+.++
T Consensus 229 l--~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 229 L--SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp H--C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred H--HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH--HHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 7 56776655432222 22222222233333333 11111111 3445568999999999999999999999
Q ss_pred ccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 468 LYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 468 ~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
...|.+ ..++.+++.+|...|++++|++.++++++++| ++...+.+..++...|++++|++.++.+....+.
T Consensus 304 ~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 304 DLNPEY-------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 987744 45789999999999999999999999999999 8889999999999999999999999999998887
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhc---------CChhHHHHHHHHHH
Q 004720 547 TTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQET---------GNESEVLKYMKRAH 617 (733)
Q Consensus 547 ~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~---------~~~~~~l~~~~~A~ 617 (733)
+++.+...+......|+.+.|+..++..++..+.+......+... -....++.+.+ |+.++.+.+|+++.
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-IGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH-HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH-HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 888777777888899999999999999988554432222111111 11112222111 55677888888888
Q ss_pred HHhhhcccCccCCCccccchhhHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHccccCCchhhhHHHHHHHHHHHHH
Q 004720 618 ARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVS 697 (733)
Q Consensus 618 ~~l~~~~~~~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~~~~~~~~~c~~ll~~~~ 697 (733)
..-++. . ..-+|+|.-+...++++.+.++|.-+.+ +.|.......... +..+
T Consensus 456 ~~~p~~--------------~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~----~~~~-- 507 (537)
T 3fp2_A 456 ELDPRS--------------E-----QAKIGLAQLKLQMEKIDEAIELFEDSAI---LARTMDEKLQATT----FAEA-- 507 (537)
T ss_dssp HHCTTC--------------H-----HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC--CHHHHHHHH----HHHH--
T ss_pred HhCCCC--------------H-----HHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHh----HHHH--
Confidence 652211 0 1226777778888899999999998888 5565544322111 1111
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHhhccc
Q 004720 698 AMIASENQKQIALMNNEVKQALELLDRAGKV 728 (733)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (733)
+.+.... +.-|.....+...+.-|+..|.+
T Consensus 508 ~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~ 537 (537)
T 3fp2_A 508 AKIQKRL-RADPIISAKMELTLARYRAKGML 537 (537)
T ss_dssp HHHHHHH-HTC--------------------
T ss_pred HHHHHhc-cccHHHHHHHhhHHHHHhhccCC
Confidence 2222222 44455555677777777776653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-18 Score=181.39 Aligned_cols=293 Identities=9% Similarity=-0.045 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+++..+|..+...|+++.|+..++++....|..+.. ++..|..+...|+ +++|+.+++++++. .|.+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 89 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC-------LPVHIGTLVELNK---ANELFYLSHKLVDL---YPSN 89 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTT-------HHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhh-------HHHHHHHHHHhhh---HHHHHHHHHHHHHh---CcCC
Confidence 467778999999999999999999999999887654 5566677778888 99999999999998 5422
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccC-cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKG-EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~-~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
. .++..++.+|...| ++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...
T Consensus 90 ~--------------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 151 (330)
T 3hym_B 90 P--------------VSWFAVGCYYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151 (330)
T ss_dssp T--------------HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2 27888999999999 999999999999886 4667888899999999999999999999998
Q ss_pred hhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+...+.....+...+..|...+. +.|.+.++ +.+ +..|++..
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------~al--~~~~~~~~------------- 194 (330)
T 3hym_B 152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS----------------------QAL--SIAPEDPF------------- 194 (330)
T ss_dssp HHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH----------------------HHH--TTCTTCHH-------------
T ss_pred HHhccccHHHHHHHHHHHHHHhhHHHHHHHHH----------------------HHH--HhCCCChH-------------
Confidence 85555444555556666665544 44444443 444 34453321
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch--hhhhhHHHHHHHHHHHHhCCC
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE--NRILRAKSFRVLCLCYLGLSL 496 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--~~~~~akl~r~la~cyl~l~~ 496 (733)
.+.+.|..++..|+|++|+++|+.++...+.... ..+..+.++.+++.+|..+|+
T Consensus 195 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 195 -----------------------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred -----------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 2234789999999999999999999987653211 113556899999999999999
Q ss_pred HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH-HHHHcCCH
Q 004720 497 IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH-EAVACQAL 564 (733)
Q Consensus 497 ~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~-~a~~~~~~ 564 (733)
+++|+++++++++++| ++...+.+..++...|++++|+++++++....+.++.....-+. .....|+.
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999 88999999999999999999999999998887767764433322 22344444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-19 Score=196.78 Aligned_cols=377 Identities=12% Similarity=-0.051 Sum_probs=227.1
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
..+-..|..++..|+++.|+.+|++|+++.+.......++. ....+.+.|.++..+|++++|+.+++++..+.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-----~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-----SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-----THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 34556799999999999999999999998765332111111 1345667899999999999999999999999775
Q ss_pred Cch-hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH---hcc
Q 004720 213 LFE-HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH---LQK 288 (733)
Q Consensus 213 ~~~-~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y---l~~ 288 (733)
.+. .....+.++.++|..++..+.++ |++|+.+|++|+++ +|.+.. .+..++.++ ...
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-y~~A~~~~~kal~~---~p~~~~--------------~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQ-NERAKVCFEKALEK---KPKNPE--------------FTSGLAIASYRLDNW 188 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHH---STTCHH--------------HHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHh---CCCCHH--------------HHHHHHHHHHHhcCc
Confidence 321 12234567888888776544221 99999999999999 553321 344455554 345
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-h
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-T 363 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~ 363 (733)
+++++|+..++.+.++ ++.++......+..+.. .|++++|+..+...+...+....++.+.+.+|...+. +
T Consensus 189 ~~~~~al~~~~~al~l----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRL----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp CCCCCTHHHHHHHHHH----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhhc----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH
Confidence 6778888888888775 34556555555544433 3677888888888886666666677778888877766 6
Q ss_pred hhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH-------------------HHhhhHHHHH
Q 004720 364 AGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV-------------------AELVSDERVL 424 (733)
Q Consensus 364 ~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l-------------------~~l~~~e~v~ 424 (733)
.|.+.+++++. .+|. +...+...+... ......+...
T Consensus 265 ~A~~~~~~al~-----~~p~-------------------~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 265 KAIELLKKALE-----YIPN-------------------NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp HHHHHHHHHHH-----HSTT-------------------CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hCCC-------------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Confidence 77777765532 1222 211111111000 0000111111
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH-HHHhCCCHHHHHHH
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL-CYLGLSLIDRAQEY 503 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~-cyl~l~~~~~A~e~ 503 (733)
..+. ............+.+.|..+.+.|+|++|+++|++++...|.+. ....++.+++. .+..+|++++|+++
T Consensus 321 ~~~~--~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 321 AHLK--KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV----AKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHH--HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHH--HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111 11111111112344589999999999999999999998877542 34456677764 45688999999999
Q ss_pred HHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 504 ITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 504 ~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
|.+|++++| +..... ..+.+.+.+++.....+.+++.+..-+......|+.+.|+..+++-++
T Consensus 395 y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 395 FIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988 432111 112223333444444444555444444555566677777777766666
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-17 Score=181.28 Aligned_cols=310 Identities=10% Similarity=0.015 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+...+..+...|++++|+..++++....|..+ ..++.+|..++..|+ +++|+.+|++++++ +|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~p~ 92 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY-------IAYYRRATVFLAMGK---SKAALPDLTKVIQL---KMD 92 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH-------HHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCC
Confidence 35666778899999999999999999999888754 458889999999999 99999999999998 442
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC---cHH------------HHHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA---SLP------------VLAMKAWL 324 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~------------~lk~~il~ 324 (733)
+ ..++..+|.+|...|++++|+.+++.+... .+.++ ..+ +..+.++.
T Consensus 93 ~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 93 F--------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 237888999999999999999999999875 23333 332 33466788
Q ss_pred hcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcc
Q 004720 325 GLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVS 403 (733)
Q Consensus 325 ~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~ 403 (733)
..|++++|+..+..++...+....++...+.+|...+. +.|...++.+ + +..|++
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~--~~~~~~ 210 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA----------------------S--KLKNDN 210 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH----------------------H--HHHCSC
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH----------------------H--HhCCCC
Confidence 99999999999999886666566667777787776665 5555555532 1 112222
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhh----
Q 004720 404 EAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRIL---- 479 (733)
Q Consensus 404 ~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~---- 479 (733)
.. .+.+.|..++..|+|++|+++|+.++...|.+......
T Consensus 211 ~~------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 211 TE------------------------------------AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254 (450)
T ss_dssp HH------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HH------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 11 22247899999999999999999999988866321100
Q ss_pred -hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 480 -RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI----ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 480 -~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~----~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.......++.++...|++++|+++++++++++| ++ ...+.+..++.+.|++++|++.++.+....+.+++.+..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 011124559999999999999999999999999 54 356678999999999999999999999887777887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 554 AAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 554 a~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
-+......|+.+.|+..++..++..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 778888999999999999999994433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-18 Score=177.81 Aligned_cols=295 Identities=10% Similarity=-0.035 Sum_probs=228.8
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.....|..++..|+++.|...|+++++..+. . ...+...+.+++..|++++|+..++++....|..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--------H------ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------C------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 3456688888899999999999999876431 0 1234445778889999999999999999998887
Q ss_pred chhHHHHHHHHHHHhHHHHhcC-CCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKN-ETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~-~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
+. +++.+|..+...| + +++|+.+|++++++ .+.+. .++..+|.+|...|+++
T Consensus 90 ~~-------~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~---~~~~~--------------~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 90 PV-------SWFAVGCYYLMVGHK---NEHARRYLSKATTL---EKTYG--------------PAWIAYGHSFAVESEHD 142 (330)
T ss_dssp TH-------HHHHHHHHHHHSCSC---HHHHHHHHHHHHTT---CTTCT--------------HHHHHHHHHHHHHTCHH
T ss_pred HH-------HHHHHHHHHHHhhhh---HHHHHHHHHHHHHh---CCccH--------------HHHHHHHHHHHHccCHH
Confidence 64 4788899999999 8 99999999999987 43221 26888999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHH
Q 004720 293 SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKG 371 (733)
Q Consensus 293 kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~ 371 (733)
+|+.+++.+.+. .+.++...+..+.++...|++++|+..+...+...+....++...+.+|...+. +.|...++.
T Consensus 143 ~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 143 QAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999886 356677888999999999999999999999986666556666777777776665 555555554
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILF 451 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~ 451 (733)
++...-....+ ...|.. ..++++.|..++
T Consensus 219 a~~~~~~~~~~---------------~~~~~~------------------------------------~~~~~~la~~~~ 247 (330)
T 3hym_B 219 ALEKIKAIGNE---------------VTVDKW------------------------------------EPLLNNLGHVCR 247 (330)
T ss_dssp HHHHHTTTSCS---------------CTTTTC------------------------------------CHHHHHHHHHHH
T ss_pred HHHHhhhcccc---------------ccccHH------------------------------------HHHHHHHHHHHH
Confidence 32111000000 000101 123446899999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH-HhcCC
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY-LQKND 529 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~-l~~gd 529 (733)
+.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|.++++++++++| ++...+.+..++ ...|+
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQN-------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HhcCHHHHHHHHHHHHhhCccc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 9999999999999999987754 45789999999999999999999999999999 888888888877 56666
Q ss_pred HH
Q 004720 530 QE 531 (733)
Q Consensus 530 ~e 531 (733)
.+
T Consensus 321 ~~ 322 (330)
T 3hym_B 321 SE 322 (330)
T ss_dssp --
T ss_pred hh
Confidence 54
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-18 Score=180.21 Aligned_cols=292 Identities=11% Similarity=-0.007 Sum_probs=206.6
Q ss_pred HHHHccCHHHHHH-HHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh
Q 004720 189 TAWEVLEQNLAIT-LLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET 267 (733)
Q Consensus 189 ~a~~~g~~~~A~~-~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~ 267 (733)
++...|+++.|+. .+.++..+.|..|.. .+..++++|..++..|+ +++|+.+|++++++ .|.+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~---~p~~------- 97 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGD---LPNAVLLFEAAVQQ---DPKH------- 97 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTC---HHHHHHHHHHHHHS---CTTC-------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCccc---chHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCC-------
Confidence 5557799999999 999999988876521 12457899999999999 99999999999987 4422
Q ss_pred hhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 268 TELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 268 ~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
..++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...+...
T Consensus 98 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 98 -------MEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred -------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 237889999999999999999999999886 456788889999999999999999999998885444333
Q ss_pred HHHHh----------------HHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 004720 348 CIWVS----------------AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRA 411 (733)
Q Consensus 348 ~~~ls----------------~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka 411 (733)
..+.. +..++ ..+. ...++..+++.+ +..|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------~~~A~~~~~~a~--~~~p~~~------- 215 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSL---------------------FLEVKELFLAAV--RLDPTSI------- 215 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHH---------------------HHHHHHHHHHHH--HHSTTSC-------
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hccc---------------------HHHHHHHHHHHH--HhCcCcc-------
Confidence 32211 11111 1111 111222222222 1112100
Q ss_pred HHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHH
Q 004720 412 KAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCY 491 (733)
Q Consensus 412 ~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cy 491 (733)
....+.+.|..+++.|+|++|+++|+.++...|.+ ..++.+++.+|
T Consensus 216 ---------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~ 261 (368)
T 1fch_A 216 ---------------------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------YLLWNKLGATL 261 (368)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHH
Confidence 11234458999999999999999999999887644 45789999999
Q ss_pred HhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----------hHHHHHHHHHHH
Q 004720 492 LGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-----------TDFLSLAAHEAV 559 (733)
Q Consensus 492 l~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-----------~~lL~la~~~a~ 559 (733)
..+|++++|+++++++++++| ++...+.+..++...|++++|++.++++....+.+ ++....-+....
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999 88889999999999999999999999988876544 454444445555
Q ss_pred HcCCHHHHHHHHH
Q 004720 560 ACQALSVAVAALS 572 (733)
Q Consensus 560 ~~~~~~~a~~aL~ 572 (733)
..|+.+.+.....
T Consensus 342 ~~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 MLGQSDAYGAADA 354 (368)
T ss_dssp HHTCGGGHHHHHT
T ss_pred HhCChHhHHHhHH
Confidence 6677776654443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=183.54 Aligned_cols=290 Identities=10% Similarity=-0.008 Sum_probs=211.6
Q ss_pred HHhccCCcchHHH-HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH
Q 004720 141 VWHDLKKYDLASG-CFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS 219 (733)
Q Consensus 141 ~~~~~g~~~~A~~-~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~ 219 (733)
.+.-.|+|+.|.. +|++|+...+. .+... ...+..++..+...|++++|+.+++++..+.|..+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~------~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 99 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEE------NPLRD----HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME---- 99 (368)
T ss_dssp ------------CHHHHCCCCCCSS------CTTTT----CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH----
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCC------Ccccc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----
Confidence 4445678888888 88777754321 11000 123456788999999999999999999999887653
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
+++++|..+...|+ +++|+.+|++++++ .|.+ ..++..+|.+|...|++++|+.+++
T Consensus 100 ---~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 100 ---AWQYLGTTQAENEQ---ELLAISALRRCLEL---KPDN--------------QTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp ---HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHCcC---HHHHHHHHHHHHhc---CCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58889999999999 99999999999998 4422 1278889999999999999999999
Q ss_pred HHHccCCCCCCCCCcHHHH---------------HHHHHHhcCChHHHHHHHHHhhhccCC--chHHHHhHHHHHHHhch
Q 004720 300 VLREGSFDGGDHHASLPVL---------------AMKAWLGLGRYNEAELELRGMVEIKGI--PECIWVSAVEAYFQAAG 362 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~l---------------k~~il~~~g~~deAi~~l~~~l~~~~~--~~~~~ls~~~ly~~~~~ 362 (733)
.+.... +.++..... .+..++..|++++|+..+..++...+. ...++...+.+|...+.
T Consensus 157 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 157 DWLRYT----PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp HHHHTS----TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhC----cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 998853 344443321 244445889999999999998855554 45566667777765554
Q ss_pred -hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHH
Q 004720 363 -TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHA 441 (733)
Q Consensus 363 -~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~ 441 (733)
+.|...++ +.+ +..|++..
T Consensus 233 ~~~A~~~~~----------------------~al--~~~~~~~~------------------------------------ 252 (368)
T 1fch_A 233 YDKAVDCFT----------------------AAL--SVRPNDYL------------------------------------ 252 (368)
T ss_dssp HHHHHHHHH----------------------HHH--HHCTTCHH------------------------------------
T ss_pred HHHHHHHHH----------------------HHH--HhCcCCHH------------------------------------
Confidence 44444444 322 22332211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-------
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N------- 513 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------- 513 (733)
.+.+.|..+++.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|+++++++++++| +
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 23347999999999999999999999987643 46789999999999999999999999999988 5
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 514 ----IASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 514 ----~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
....+.+..++...|++++|..+++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 5777889999999999999998775
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-16 Score=174.08 Aligned_cols=348 Identities=12% Similarity=0.028 Sum_probs=234.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-Cc-hhHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG-LF-EHYKSLA 221 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~-~~~~~La 221 (733)
++++.+.++..+++.+..... ... ... ...++...+.++..+|++++|+.++++|+++.+. .+ ......+
T Consensus 23 ~l~~~~~~l~~~e~~~~~~~~--~~~---~~~---~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~ 94 (472)
T 4g1t_A 23 NLMEGENSLDDFEDKVFYRTE--FQN---REF---KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSL 94 (472)
T ss_dssp CTTTTCCCHHHHHHHHHHHTT--SCC---------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHH--hCC---Chh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 567788888888776643211 000 000 0134555688888999999999999999998654 11 1223456
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh--ccCcHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL--QKGEYESVIKCVR 299 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl--~~~~~ekAl~~l~ 299 (733)
..|.|+|..+...|+ +++|..+|++++++.++...... . ....++..+|.+++ ..++|++|+.+++
T Consensus 95 ~~~~nla~~y~~~g~---~~~A~~~~~ka~~i~~~~~~~~~--~-------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ 162 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGR---LSDVQIYVDKVKHVCEKFSSPYR--I-------ESPELDCEEGWTRLKCGGNQNERAKVCFE 162 (472)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCSSC--C-------CCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhHhcccccc--h-------hhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 678999999999999 99999999999999776432211 1 11235666676665 4568999999999
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHh---cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhh
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLG---LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGL 376 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~---~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~l 376 (733)
.+.++ .+.+|...+..+.++.. .+++++|+..+.+.+...|....++...+..+.....
T Consensus 163 kal~~----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~-------------- 224 (472)
T 4g1t_A 163 KALEK----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE-------------- 224 (472)
T ss_dssp HHHHH----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---------------
T ss_pred HHHHh----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh--------------
Confidence 99987 46778777666666543 4778899999988885444333333333322211110
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
.......+..++++.+ +..|+.. ..+.+.|..+...|+|
T Consensus 225 ---~~~~~~~a~~~~~~al--~~~~~~~------------------------------------~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 225 ---EGEEEGEGEKLVEEAL--EKAPGVT------------------------------------DVLRSAAKFYRRKDEP 263 (472)
T ss_dssp --------CHHHHHHHHHH--HHCSSCH------------------------------------HHHHHHHHHHHHTTCH
T ss_pred ---hhhHHHHHHHHHHHHH--HhCccHH------------------------------------HHHHHHHHHHHHcCch
Confidence 0000112222222332 1223221 1233589999999999
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-------------------CCHHHHHHHHHHHHhhCC-ChHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-------------------SLIDRAQEYITEAEKLEP-NIAS 516 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-------------------~~~~~A~e~~~~A~~ldp-~~~t 516 (733)
++|++.|+.++...|.+ +.++.++|.||... +.+++|.+.++++.+++| +..+
T Consensus 264 ~~A~~~~~~al~~~p~~-------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 336 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNN-------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336 (472)
T ss_dssp HHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred HHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence 99999999999987754 45788888887643 447889999999999999 8888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTICLDFTTD----FLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~----lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.+.+..++...|++++|++++++.......+.+ .+.++.......|+.+.|+..++..++.
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999998876543222 1222222223467788888777777763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-17 Score=172.53 Aligned_cols=261 Identities=11% Similarity=0.026 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+..++..+...|++++|+..+++++.+.|..+ .+++++|..+...|+ +++|+.+|++++++ .|.+
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~---~~~A~~~~~~al~~---~p~~- 132 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA-------EAWQFLGITQAENEN---EQAAIVALQRCLEL---QPNN- 132 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH-------HHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCC-
Confidence 356678888899999999999999999888764 358888999999999 99999999999998 4322
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH----------HHHHHhcCChHH
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA----------MKAWLGLGRYNE 331 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk----------~~il~~~g~~de 331 (733)
..++..+|.+|...|++++|+.+++.+.+.. +.++...... +.++...|++++
T Consensus 133 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 133 -------------LKALMALAVSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHH
T ss_pred -------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence 2378889999999999999999998888752 2223322222 556666666666
Q ss_pred HHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCc--chHHHHH
Q 004720 332 AELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGV--SEAAVKL 409 (733)
Q Consensus 332 Ai~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~--~~~~l~~ 409 (733)
|+..+...+.. .|+ +..
T Consensus 196 A~~~~~~al~~---------------------------------------------------------~p~~~~~~---- 214 (365)
T 4eqf_A 196 VKELYLEAAHQ---------------------------------------------------------NGDMIDPD---- 214 (365)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------SCSSCCHH----
T ss_pred HHHHHHHHHHh---------------------------------------------------------CcCccCHH----
Confidence 66665544321 111 111
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
.+.+.|..++..|+|++|+++|+.++...|.+ +.++.+++.
T Consensus 215 --------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~ 255 (365)
T 4eqf_A 215 --------------------------------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-------YSLWNRLGA 255 (365)
T ss_dssp --------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence 12247888889999999999999999887744 457899999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC------------hHHHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT------------TDFLSLAAH 556 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~------------~~lL~la~~ 556 (733)
+|...|++++|+++++++++++| ++.+.+.+..++...|++++|+++++++....+.. ..+...-..
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence 99999999999999999999999 78888999999999999999999999998776431 233333334
Q ss_pred HHHHcCCHHHHHHHHHH
Q 004720 557 EAVACQALSVAVAALSN 573 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~ 573 (733)
.....|..+.+.++.+.
T Consensus 336 ~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 336 ALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHTCHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 44456666666555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=164.40 Aligned_cols=300 Identities=13% Similarity=0.068 Sum_probs=222.4
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+++.|..+|++|++..+. +......++...+.++...|+++.|+.++.++..+.+.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE----------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc----------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 34456799999999999999999999986321 11122356677799999999999999999999998664
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc--
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE-- 290 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~-- 290 (733)
.+. ....+.+++.+|..+...|+ +++|+.++++++++.++... ......++..++.+|...|+
T Consensus 76 ~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 76 IGD-QLGEAKASGNLGNTLKVLGN---FDEAIVCCQRHLDISRELND-----------KVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccc-cHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhcC-----------chHHHHHHHHHHHHHHHcCccc
Confidence 322 34567889999999999999 99999999999999665321 22345689999999999999
Q ss_pred ------------------HHHHHHHHHHHHccCC--CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHH
Q 004720 291 ------------------YESVIKCVRVLREGSF--DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 291 ------------------~ekAl~~l~~a~~~~~--~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ 350 (733)
+++|+.+++.+..... +.....+..++..+.++...|++++|+..+...+..
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 212 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-------- 212 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------
Confidence 9999988877655310 000011224466677777778888887776644320
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
.. .. ..+
T Consensus 213 ------------------~~----------------------~~----~~~----------------------------- 219 (338)
T 3ro2_A 213 ------------------AK----------------------EF----GDK----------------------------- 219 (338)
T ss_dssp ------------------HH----------------------HH----TCH-----------------------------
T ss_pred ------------------HH----------------------hc----CCh-----------------------------
Confidence 00 00 000
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
......+.+.|..++..|+|++|+++|+.++.+.+.... +...+.++.+++.+|...|++++|.+++++++++
T Consensus 220 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 220 ------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 000112335789999999999999999999987664322 3577889999999999999999999999999887
Q ss_pred CC---C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 511 EP---N----IASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 511 dp---~----~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.| + ..+.+.+..++...|++++|+++++......+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 54 1 34667789999999999999999999887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-17 Score=174.62 Aligned_cols=318 Identities=12% Similarity=0.047 Sum_probs=215.9
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+++.|..+|++|++..+. +......++...+.++...|+++.|+.++.++..+.+.
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE----------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 34556799999999999999999999986321 11122356777799999999999999999999998765
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc--
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE-- 290 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~-- 290 (733)
... ....+.+++++|..+...|+ +++|+.++++++++.++... ......++..+|.+|...|+
T Consensus 80 ~~~-~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 80 IGD-QLGEAKASGNLGNTLKVLGN---FDEAIVCCQRHLDISRELND-----------KVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp TTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccc-cHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhccc-----------ccchHHHHHHHHHHHHHcCCcc
Confidence 332 34567889999999999999 99999999999999665320 22346689999999999999
Q ss_pred ------------------HHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhhccC---Cc
Q 004720 291 ------------------YESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVEIKG---IP 346 (733)
Q Consensus 291 ------------------~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~~~~---~~ 346 (733)
|++|+.+++.+..+... .+..| ..+...+.++...|++++|+..+...+...+ .+
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA-LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 99999998877663210 11122 2457788899999999999999987763211 11
Q ss_pred hH---HHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 347 EC---IWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 347 ~~---~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
.. .+...+.+|...+. +.|...+++. + .+....
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------l-----------------~~~~~~---- 260 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKT----------------------L-----------------LLARQL---- 260 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------H-----------------HHHHHT----
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHH----------------------H-----------------HHHHhC----
Confidence 11 23333333333332 2222222211 1 000000
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
. ........+.+.|..+++.|+|++|+++|+.++.+.+.... +...+.++.+++.+|..+|++++|.+
T Consensus 261 --------~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 261 --------K---DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp --------T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------c---CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 00111223445788888888888888888888876553322 24667788888888888888888888
Q ss_pred HHHHHHhhCC-------ChHHHHHHHHHHHhcCCHH
Q 004720 503 YITEAEKLEP-------NIASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 503 ~~~~A~~ldp-------~~~t~~~~~ki~l~~gd~e 531 (733)
++++++++.+ ...+.+.+..++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8888877732 2345556666766666653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-16 Score=172.19 Aligned_cols=303 Identities=13% Similarity=0.032 Sum_probs=229.6
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+......|..++..|+++.|..+|++|++..+. +......++...+.+++..|++++|+.+++++..+
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455668999999999999999999999986321 11122356677789999999999999999999998
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
...... ....+.+++++|..+...|+ +++|+.+|++++++..+... ......++..+|.+|...|
T Consensus 116 ~~~~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 116 AKSMND-RLGEAKSSGNLGNTLKVMGR---FDEAAICCERHLTLARQLGD-----------RLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHccC-chHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHhhc-----------hHHHHHHHHHHHHHHHHcC
Confidence 654322 35577889999999999999 99999999999999665310 2234568999999999999
Q ss_pred c-----------------HHHHHHHHHHHHccCC--CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHH
Q 004720 290 E-----------------YESVIKCVRVLREGSF--DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 290 ~-----------------~ekAl~~l~~a~~~~~--~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ 350 (733)
+ +++|+.+++.+..+.. +.....+..++..+.++...|++++|+..+...+..
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 252 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-------- 252 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------
Confidence 9 9999988877765321 000111234577778888888888888887654421
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
.. .. ..+
T Consensus 253 ------------------~~----------------------~~----~~~----------------------------- 259 (411)
T 4a1s_A 253 ------------------AR----------------------EF----GDR----------------------------- 259 (411)
T ss_dssp ------------------HH----------------------HH----TCH-----------------------------
T ss_pred ------------------HH----------------------hc----CCc-----------------------------
Confidence 00 00 000
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
......+.+.|..++..|+|++|+++|+.++.+.+.... +...+.++.+++.+|...|++++|.+++++++++
T Consensus 260 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 260 ------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE-REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp ------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001123445899999999999999999999987764322 2567899999999999999999999999999888
Q ss_pred CC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 511 EP-------NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 511 dp-------~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.+ ...+.+.+..++...|++++|+++++......+
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 54 234677899999999999999999999888754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-17 Score=173.51 Aligned_cols=270 Identities=13% Similarity=-0.008 Sum_probs=203.4
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|..++..|+++.|..+|++|++..|. . ...+...+.++...|++++|+.+++++..+.|..+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 133 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG--------D------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------C------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 456789999999999999999999986531 1 24566778899999999999999999999988765
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekA 294 (733)
.+++++|..+...|+ +++|+.+|++++++ .|.+...... ......++..++.+|...|++++|
T Consensus 134 -------~~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~p~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 134 -------KALMALAVSYTNTSH---QQDACEALKNWIKQ---NPKYKYLVKN----KKGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp -------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CHHHHCC-----------------------CCHHHHHH
T ss_pred -------HHHHHHHHHHHcccc---HHHHHHHHHHHHHh---CccchHHHhh----hccchHHHHHHHHHHhhhhhHHHH
Confidence 358899999999999 99999999999998 3321110000 001133567789999999999999
Q ss_pred HHHHHHHHccCCCCCCC--CCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHH
Q 004720 295 IKCVRVLREGSFDGGDH--HASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGV 372 (733)
Q Consensus 295 l~~l~~a~~~~~~~~~~--~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~ 372 (733)
+.+++.+.+.. +. +|..++..+.++...|++++|+..+...+..
T Consensus 197 ~~~~~~al~~~----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------ 242 (365)
T 4eqf_A 197 KELYLEAAHQN----GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------------------------------ 242 (365)
T ss_dssp HHHHHHHHHHS----CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHhC----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------------
Confidence 99999999863 34 6778899999999999999999998765431
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
.|++.. .+.+.|..+++
T Consensus 243 ---------------------------~p~~~~------------------------------------~~~~l~~~~~~ 259 (365)
T 4eqf_A 243 ---------------------------RPEDYS------------------------------------LWNRLGATLAN 259 (365)
T ss_dssp ---------------------------CTTCHH------------------------------------HHHHHHHHHHH
T ss_pred ---------------------------CCCCHH------------------------------------HHHHHHHHHHH
Confidence 111111 12247888999
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-------------hHHHHH
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN-------------IASAFL 519 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~-------------~~t~~~ 519 (733)
.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|+++++++++++|. ......
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 332 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAA 332 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHH
Confidence 999999999999999987644 467899999999999999999999999999873 344556
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004720 520 KFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~ 539 (733)
+..++...|+.+.|..+++.
T Consensus 333 l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 333 LRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 78888889999988877644
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-16 Score=163.54 Aligned_cols=129 Identities=10% Similarity=0.047 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+..++..++..|++++|+.+++++....|..+. .++.+|..+...|+ +++|+.+|++++++ .|.+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~---~~~A~~~~~~a~~~---~~~~- 88 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE-------AWRSLGLTQAENEK---DGLAIIALNHARML---DPKD- 88 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CcCC-
Confidence 4566788999999999999999999998887553 57788999999999 99999999999998 4321
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH--------------HH-HHHhc
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA--------------MK-AWLGL 326 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk--------------~~-il~~~ 326 (733)
..++..+|.+|...|++++|+.+++.+.+.. +.++...... +. ++...
T Consensus 89 -------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 89 -------------IAVHAALAVSHTNEHNANAALASLRAWLLSQ----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----TTTTTC--------------------CCTTSH
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc
Confidence 2378889999999999999999999988753 3344433333 22 35555
Q ss_pred CChHHHHHHHHHhhh
Q 004720 327 GRYNEAELELRGMVE 341 (733)
Q Consensus 327 g~~deAi~~l~~~l~ 341 (733)
|++++|+..+...+.
T Consensus 152 ~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 152 NEYRECRTLLHAALE 166 (327)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 667777776665553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-16 Score=167.30 Aligned_cols=289 Identities=12% Similarity=0.046 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|++++|+.+++++..+.|..+ ...+.+++.+|..++..|+ +++|+.++++++++......
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~- 82 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL---KTLSAIYSQLGNAYFYLHD---YAKALEYHHHDLTLARTIGD- 82 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhccc-
Confidence 3556778899999999999999999999977654 3467889999999999999 99999999999999665321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCC----CcHHHHHHHHHHhcCC--------
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHH----ASLPVLAMKAWLGLGR-------- 328 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~----p~~~~lk~~il~~~g~-------- 328 (733)
.+....++..+|.+|...|++++|+.+++.+....+ ...+ +.+++..+.++...|+
T Consensus 83 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 150 (406)
T 3sf4_A 83 ----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR--ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 150 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred ----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hcccccchHHHHHHHHHHHHHcCCcccccccc
Confidence 223456899999999999999999999988877431 0011 2255788889999999
Q ss_pred ------------hHHHHHHHHHhhhc---cCCc---hHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHH
Q 004720 329 ------------YNEAELELRGMVEI---KGIP---ECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVR 389 (733)
Q Consensus 329 ------------~deAi~~l~~~l~~---~~~~---~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~ 389 (733)
+++|+..+...+.. .+.+ ...+...+.+|...+. +.|...+++
T Consensus 151 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------ 212 (406)
T 3sf4_A 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ------------------ 212 (406)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH------------------
Confidence 88888887665421 1111 1122333333333322 222222221
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 390 MAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 390 ~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
.+ .+.... . ........+.+.|..++..|+|++|+++|+.++.+
T Consensus 213 ----al-----------------~~~~~~------------~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 213 ----RL-----------------LIAKEF------------G---DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp ----HH-----------------HHHHHT------------T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HH-----------------HHHHhc------------C---CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 000000 0 00111224456788888888888888888888877
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 470 LPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N------IASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 470 ~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
.+.... +...+.++.+++.+|...|++++|.+++++++++.+ . ..+.+.+..++...|++++|++++++...
T Consensus 257 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 257 ARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCcC-chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 654322 246678888888888888888888888888887744 2 44566788888888888888888877665
Q ss_pred c
Q 004720 543 C 543 (733)
Q Consensus 543 ~ 543 (733)
.
T Consensus 336 ~ 336 (406)
T 3sf4_A 336 I 336 (406)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-16 Score=158.40 Aligned_cols=252 Identities=10% Similarity=-0.016 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+..+|..+...|+++.|+..++++.++.|..+. +++.+|..+...|+ +++|+.+|+++++. + .+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~~~---~~~A~~~~~~a~~~---~-~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY-------IYNRRAVCYYELAK---YDLAQKDIETYFSK---V-NA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST-------THHHHHHHHHHTTC---HHHHHHHHHHHHTT---S-CT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHHhh---HHHHHHHHHHHHhc---c-Cc
Confidence 45667789999999999999999999999998765 47888889999999 99999999999883 2 11
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
......++..+|.+|...|++++|+.+++.+.+. .+.++.+++..+.++...|++++|+..+...+
T Consensus 70 ----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 70 ----------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp ----------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred ----------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 1123457889999999999999999999999886 46778888999999999999999999999998
Q ss_pred hccCCchHHHHhHH-HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 341 EIKGIPECIWVSAV-EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 341 ~~~~~~~~~~ls~~-~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
...+.....+...+ .+|....-+.|...++ +.+ +..|++..
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------~a~--~~~p~~~~-------------- 177 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFV----------------------KVL--ELKPNIYI-------------- 177 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH----------------------HHH--HHSTTCHH--------------
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH--HhCccchH--------------
Confidence 65565556666666 5555442233433333 333 23343321
Q ss_pred HHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCchh-hhhhHHHHHHHHHHHHhCC
Q 004720 420 DERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD---YEASAEMFEKSMLYLPFDVEN-RILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~---y~~A~~~y~~aL~~~~~~~~~-~~~~akl~r~la~cyl~l~ 495 (733)
.++..|..++..|+ |++|+..|+.++.+....... ......++..++.+|...|
T Consensus 178 ----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 178 ----------------------GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp ----------------------HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 22346777888888 999999999999876322210 1345688999999999999
Q ss_pred CHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 496 LIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
++++|+++++++++++| ++...-.+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999 66554433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-15 Score=151.59 Aligned_cols=231 Identities=13% Similarity=0.068 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+...+.++...|++++|+.+++++..+. ..+ .+++++|..+...|+ +++|+.+|++++++.+....+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~-------~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI-------TYLNNRAAAEYEKGE---YETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH-------HHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccccc
Confidence 456677889999999999999999999987 544 358899999999999 999999999999985443211
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
......++..+|.+|...|++++|+.+++.+.... |. ..++...|++++|+..+...+
T Consensus 75 ----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-----~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 75 ----------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-------RT-----ADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ch-----hHHHHHHhHHHHHHHHHHHHH
Confidence 12235689999999999999999999999998852 33 344555556666655544332
Q ss_pred hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhH
Q 004720 341 EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSD 420 (733)
Q Consensus 341 ~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~ 420 (733)
. ..|++.
T Consensus 133 ~---------------------------------------------------------~~~~~~---------------- 139 (258)
T 3uq3_A 133 Y---------------------------------------------------------VNPEKA---------------- 139 (258)
T ss_dssp H---------------------------------------------------------CCHHHH----------------
T ss_pred H---------------------------------------------------------cCcchH----------------
Confidence 2 111110
Q ss_pred HHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 421 ERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 421 e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
..+.+.|..++..|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|
T Consensus 140 --------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 140 --------------------EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHH
Confidence 122347889999999999999999999987754 36789999999999999999
Q ss_pred HHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 501 QEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 501 ~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
+++++++++.+| ++...+.+..++...|++++|++.+++.....
T Consensus 193 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999 88999999999999999999999999998876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-15 Score=157.43 Aligned_cols=296 Identities=13% Similarity=0.055 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+...+..+...|+++.|+..++++..+.|..+ ...+.+++.+|..+...|+ +++|+.++++++++......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~-- 78 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL---KTLSAIYSQLGNAYFYLHD---YAKALEYHHHDLTLARTIGD-- 78 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH---HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcccc--
Confidence 455668889999999999999999999877654 3467789999999999999 99999999999998654311
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC----cHHHHHHHHHHhcCC---------
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA----SLPVLAMKAWLGLGR--------- 328 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p----~~~~lk~~il~~~g~--------- 328 (733)
.+....++..+|.+|...|++++|+.+++.+....+ ...++ .+++..+.++...|+
T Consensus 79 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 79 ---------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR--ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred ---------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 223456899999999999999999999988876421 00111 133444555555554
Q ss_pred ----hHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcch
Q 004720 329 ----YNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSE 404 (733)
Q Consensus 329 ----~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~ 404 (733)
++++...+.. |.+.++ +.+
T Consensus 148 ~~~~~~~a~~~~~~--------------------------A~~~~~----------------------~a~--------- 170 (338)
T 3ro2_A 148 TGEFPEDVRNALQA--------------------------AVDLYE----------------------ENL--------- 170 (338)
T ss_dssp ---CCHHHHHHHHH--------------------------HHHHHH----------------------HHH---------
T ss_pred hhhhhhhHHHHHHH--------------------------HHHHHH----------------------HHH---------
Confidence 1111111110 011111 000
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHH
Q 004720 405 AAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSF 484 (733)
Q Consensus 405 ~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~ 484 (733)
.+.+. ..........+.+.|..++..|+|++|+++|+.++.+.+.... +...+.++
T Consensus 171 --------~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~ 226 (338)
T 3ro2_A 171 --------SLVTA---------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERRAY 226 (338)
T ss_dssp --------HHHHH---------------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred --------HHHHh---------------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Confidence 00000 0000111224456899999999999999999999987764322 25678899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC-C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--C----hHHH
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKLEP-N------IASAFLKFKIYLQKNDQEGAINQILAMTICLDF--T----TDFL 551 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~--~----~~lL 551 (733)
.+++.+|...|++++|.+++++++++.| . ..+.+.+..++...|++++|++.++......+. + ...+
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999999999999988865 3 456677899999999999999999988766421 1 1244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 552 SLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 552 ~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
...+......|+.+.|...++..++.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44456677789999999888888773
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=166.03 Aligned_cols=299 Identities=11% Similarity=0.015 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|+++.|+.+++++..+.|..+ ...+.+++.+|..+...|+ +++|+.+|++++++......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~- 121 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL---RTLSAIYSQLGNAYFYLGD---YNKAMQYHKHDLTLAKSMND- 121 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh---hHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHccC-
Confidence 4555778899999999999999999999977654 3467789999999999999 99999999999999665321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CC-CCCCCcHHHHHHHHHHhcCC----------
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DG-GDHHASLPVLAMKAWLGLGR---------- 328 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~-~~~~p~~~~lk~~il~~~g~---------- 328 (733)
......++..+|.+|...|++++|+.+++.+..... .. .+..+.+++..+.++...|+
T Consensus 122 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 122 ----------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred ----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhh
Confidence 223456899999999999999999999988776421 00 00111233455555555555
Q ss_pred hHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHH
Q 004720 329 YNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVK 408 (733)
Q Consensus 329 ~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~ 408 (733)
+++|...+... .+.+++. +.+.... .
T Consensus 192 ~~~a~~~~~~A--------------------------~~~~~~a---------------l~~~~~~----~--------- 217 (411)
T 4a1s_A 192 GDDVKEALTRA--------------------------VEFYQEN---------------LKLMRDL----G--------- 217 (411)
T ss_dssp CHHHHHHHHHH--------------------------HHHHHHH---------------HHHHHHH----T---------
T ss_pred hhhhhHHHHHH--------------------------HHHHHHH---------------HHHHHHc----C---------
Confidence 22222221111 1111100 0000000 0
Q ss_pred HHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHH
Q 004720 409 LRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLC 488 (733)
Q Consensus 409 ~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la 488 (733)
........+.+.|..++..|+|++|+++|+.++.+.+.... ....+.++.+++
T Consensus 218 --------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la 270 (411)
T 4a1s_A 218 --------------------------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-RAAERRANSNLG 270 (411)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHH
Confidence 00111224556899999999999999999999988764322 256778999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCC-C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC------hHHHHHHH
Q 004720 489 LCYLGLSLIDRAQEYITEAEKLEP-N------IASAFLKFKIYLQKNDQEGAINQILAMTICLDFT------TDFLSLAA 555 (733)
Q Consensus 489 ~cyl~l~~~~~A~e~~~~A~~ldp-~------~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~------~~lL~la~ 555 (733)
.+|...|++++|++++++++++.| . ..+.+.+..++...|++++|+++++......... ...+...+
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999999999999998866 2 4566789999999999999999999888764321 12444445
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 004720 556 HEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 556 ~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
......|+.+.|...++..++.
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 6677789999998888888874
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-15 Score=151.50 Aligned_cols=234 Identities=16% Similarity=0.107 Sum_probs=193.0
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..++..|+++.|..+|+++++.. . . ..++..++.++...|++++|+.++.++..+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-------~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-------D-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-------C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-------c-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 46678889999999999999999999999763 1 1 2567778999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
|..+........+++.+|..+...|+ +++|+.+|++++++ .+. +.++...|+
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~---~~~----------------------~~~~~~~~~ 120 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGD---LKKTIEYYQKSLTE---HRT----------------------ADILTKLRN 120 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CCC----------------------HHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHhc---Cch----------------------hHHHHHHhH
Confidence 98655556678899999999999999 99999999999998 431 234556678
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHH
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAK 370 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk 370 (733)
+++|+..++.+... .+..+..++..+.++...|++++|+..+...+..
T Consensus 121 ~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------------------- 168 (258)
T 3uq3_A 121 AEKELKKAEAEAYV----NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---------------------------- 168 (258)
T ss_dssp HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHc----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------------------
Confidence 99999999988875 3456677789999999999999999887755431
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASIL 450 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~ 450 (733)
.|+++. ++.+.|..+
T Consensus 169 -----------------------------~~~~~~------------------------------------~~~~l~~~~ 183 (258)
T 3uq3_A 169 -----------------------------APEDAR------------------------------------GYSNRAAAL 183 (258)
T ss_dssp -----------------------------CTTCHH------------------------------------HHHHHHHHH
T ss_pred -----------------------------CcccHH------------------------------------HHHHHHHHH
Confidence 111110 122478889
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 451 FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 451 ~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
++.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|.++++++++++
T Consensus 184 ~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 184 AKLMSFPEAIADCNKAIEKDPNF-------VRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999987644 4678999999999999999999999999998
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-15 Score=157.22 Aligned_cols=280 Identities=10% Similarity=0.013 Sum_probs=200.6
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..++..|..++..|+ +++|+.+|+++++. .|.+ ..++..+|.+|...|++++|+.+++.+
T Consensus 22 ~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN---LAEAALAFEAVCQA---APER--------------EEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp SCHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHh---CCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 347889999999999 99999999999997 4421 236788999999999999999999999
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCC
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~ 381 (733)
.+. .+.++..++..+.++...|++++|+..+...+...+.....+.......... .....+. ...+-...
T Consensus 82 ~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~ 151 (327)
T 3cv0_A 82 RML----DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDI---DDLNVQS---EDFFFAAP 151 (327)
T ss_dssp HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------CCTTSH
T ss_pred Hhc----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHH---HHHHHHH---HhHHHHHc
Confidence 886 3567788899999999999999999999988854443333321111100000 0000000 00000000
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAE 461 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~ 461 (733)
.....+...+++.+ +..|++ ..+++..|..+++.|+|++|++
T Consensus 152 ~~~~~A~~~~~~~~--~~~~~~------------------------------------~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 152 NEYRECRTLLHAAL--EMNPND------------------------------------AQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHHHHHHHHHHHH--HHSTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHH--hhCCCC------------------------------------HHHHHHHHHHHHHhccHHHHHH
Confidence 00122222222222 111111 1234458999999999999999
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
+|+.++...|.+ ..++.+++.+|...|++++|+++++++++.+| ++...+.+..++...|++++|++.++++
T Consensus 194 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 194 NLRRAVELRPDD-------AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999887644 35789999999999999999999999999999 8899999999999999999999999999
Q ss_pred HhccCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 541 TICLDF------------TTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 541 ~~~~~~------------~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
....+. .+......+......|+.+.|...++..++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888766 466665556777788898888776654444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-15 Score=150.19 Aligned_cols=252 Identities=12% Similarity=-0.029 Sum_probs=184.8
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
..|++++|+..++++....+..+ ...+.+++.+|..+...|+ +++|+.+|++++++ .|.+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~---~~~~----------- 76 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTD---DERAQLLYERGVLYDSLGL---RALARNDFSQALAI---RPDM----------- 76 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CCCC-----------
T ss_pred ccchHHHHHHHHHHHHhcccccC---chhHHHHHHHHHHHHHccc---HHHHHHHHHHHHHc---CCCc-----------
Confidence 56999999999999998744322 2356789999999999999 99999999999998 5422
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
..++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...+.......
T Consensus 77 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 77 ---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 127889999999999999999999999986 4567888899999999999999999999988844333322211
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
.....+.....+.|...++ +.+ ...|++
T Consensus 150 ~~~~~~~~~~~~~A~~~~~----------------------~~~--~~~~~~---------------------------- 177 (275)
T 1xnf_A 150 WLYLAEQKLDEKQAKEVLK----------------------QHF--EKSDKE---------------------------- 177 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHH----------------------HHH--HHSCCC----------------------------
T ss_pred HHHHHHHhcCHHHHHHHHH----------------------HHH--hcCCcc----------------------------
Confidence 1111111111122222222 222 111111
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
...|..+..++..+++++|++.|..++...|... +..+.++.++|.+|..+|++++|.++++++++++
T Consensus 178 ---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 178 ---------QWGWNIVEFYLGNISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp ---------STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---------hHHHHHHHHHHHhcCHHHHHHHHHHHhccccccc---ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 1234577788899999999999999988765432 4567899999999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
| +.... ..++...|++++|++++
T Consensus 246 p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHHH---HHHHHHHHHHHHC----
T ss_pred chhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9 54433 55667788999999887
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-14 Score=144.10 Aligned_cols=236 Identities=8% Similarity=0.017 Sum_probs=159.3
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
+++++.|..++..|+ +++|+..|+++++. .|.+. .++..+|.+|...|++++|+.+++.+
T Consensus 4 ~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~---~p~~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 4 DVEFRYADFLFKNNN---YAEAIEVFNKLEAK---KYNSP--------------YIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp -CHHHHHHHHHTTTC---HHHHHHHHHHHHHT---TCCCS--------------TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHh---CCCcH--------------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 357889999999999 99999999999987 54322 16778899999999999999999999
Q ss_pred HccCCCCCCCCCc----HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhh
Q 004720 302 REGSFDGGDHHAS----LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGL 376 (733)
Q Consensus 302 ~~~~~~~~~~~p~----~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~l 376 (733)
...+ .+|. +++..+.++...|++++|+..+.+.+...+.....+...+.+|...+. +.|.+.++
T Consensus 64 ~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------ 132 (272)
T 3u4t_A 64 FSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME------ 132 (272)
T ss_dssp HTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG------
T ss_pred Hhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH------
Confidence 8832 3333 368999999999999999999998885444444555556665554444 33333333
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
+.+ +..|++... +++.|...+..++|
T Consensus 133 ----------------~al--~~~~~~~~~------------------------------------~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 133 ----------------KQI--RPTTTDPKV------------------------------------FYELGQAYYYNKEY 158 (272)
T ss_dssp ----------------GGC--CSSCCCHHH------------------------------------HHHHHHHHHHTTCH
T ss_pred ----------------HHh--hcCCCcHHH------------------------------------HHHHHHHHHHHHHH
Confidence 333 334433211 12345444555577
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhC---CCh------HHHHHHHHHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL---IDRAQEYITEAEKLE---PNI------ASAFLKFKIY 524 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~---~~~A~e~~~~A~~ld---p~~------~t~~~~~ki~ 524 (733)
++|++.|+.++...|.+ ...+..++.++..+++ +++|+..+++++++. |++ ...+.+..++
T Consensus 159 ~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 77777777777666533 2456667777777776 666777777776664 321 2444566677
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
...|++++|+++++++....+.+++
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHH
Confidence 7777777777777777766655554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=159.01 Aligned_cols=238 Identities=6% Similarity=-0.056 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcC-CCCCHHHHHHHHHHHHHHHhcCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN-ETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~-~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
.+.+.+++.++...|++++|+.++++++.+.|..+. +++++|..+...| + +++|+.+|++++.+ +|
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~-------a~~~~g~~l~~~g~d---~~eAl~~~~~al~l---~P 163 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT-------VWHFRRVLLKSLQKD---LHEEMNYITAIIEE---QP 163 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTCC---HHHHHHHHHHHHHH---CT
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH-------HHHHHHHHHHHcccC---HHHHHHHHHHHHHH---CC
Confidence 356667788888999999999999999999998764 5888999999998 6 99999999999999 55
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+ ..+|.+++.+|...|++++|+.+++.+... ++.++.+++.++.++...|++++|+..+.+
T Consensus 164 ~~--------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 164 KN--------------YQVWHHRRVLVEWLRDPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp TC--------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred CC--------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 32 238999999999999999999999999987 567888899999999999999999999887
Q ss_pred hhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 339 MVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 339 ~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+|...+ ++..+|
T Consensus 226 al~l~P---------------------------------------------------------~~~~a~----------- 237 (382)
T 2h6f_A 226 LLKEDV---------------------------------------------------------RNNSVW----------- 237 (382)
T ss_dssp HHHHCT---------------------------------------------------------TCHHHH-----------
T ss_pred HHHhCC---------------------------------------------------------CCHHHH-----------
Confidence 764222 121111
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh-cCCHHHH-----HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHH
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFR-SKDYEAS-----AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYL 492 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k-~~~y~~A-----~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl 492 (733)
.+.|..+.+ .|.+++| +++|+.++.+.|.+ ..++.+++.++.
T Consensus 238 -------------------------~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------~~a~~~l~~ll~ 285 (382)
T 2h6f_A 238 -------------------------NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQ 285 (382)
T ss_dssp -------------------------HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHT
T ss_pred -------------------------HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHH
Confidence 124555555 3443666 69999999998855 357899999999
Q ss_pred hCC--CHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhccCCChH
Q 004720 493 GLS--LIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN--------D-QEGAINQILAM-TICLDFTTD 549 (733)
Q Consensus 493 ~l~--~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g--------d-~e~Al~~l~~~-~~~~~~~~~ 549 (733)
..| ++++|++.+.++ +.+| ++.....++.++...| + .++|++.|+.+ .+..+...+
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~ 354 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE 354 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred ccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence 988 799999999998 8899 8889999999999874 3 58999999998 676443333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=144.63 Aligned_cols=267 Identities=8% Similarity=0.011 Sum_probs=197.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
.++.+...|+++.|+..+++.....|... ....+.+++.++..|+ ++.|+.-++. . + +
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~------~e~~~~l~r~yi~~g~---~~~al~~~~~-------~--~----~ 62 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERD------VERDVFLYRAYLAQRK---YGVVLDEIKP-------S--S----A 62 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHH------HHHHHHHHHHHHHTTC---HHHHHHHSCT-------T--S----C
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhh------HHHHHHHHHHHHHCCC---HHHHHHHhcc-------c--C----C
Confidence 35677789999999999998776665421 1234556788889999 8888743322 1 1 0
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
. ....+..++..|...+++++|++.++.+.... ..+.+|..++..+.++...|++++|+..+.+ +.
T Consensus 63 -----~--~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~ 128 (291)
T 3mkr_A 63 -----P--ELQAVRMFAEYLASHSRRDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD 128 (291)
T ss_dssp -----H--HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC
T ss_pred -----h--hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC
Confidence 1 13478889999999999999999999876521 0256777889999999999999999999875 34
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
....+...+.+|...++ +.|...++++ + +..|++.... +
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~----------------------~--~~~p~~~~~~-----l----------- 168 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKM----------------------Q--DQDEDATLTQ-----L----------- 168 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------H--HHCTTCHHHH-----H-----------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------------H--hhCcCcHHHH-----H-----------
Confidence 45566667777776665 5555555533 2 2234331000 0
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
..- +...+...|+|++|+..|+.++..+|.+ ..++.++|.||.++|++++|++.+
T Consensus 169 ----------------~~a--~~~l~~~~~~~~eA~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 169 ----------------ATA--WVSLAAGGEKLQDAYYIFQEMADKCSPT-------LLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp ----------------HHH--HHHHHHCTTHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------HHH--HHHHHhCchHHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000 1223346699999999999999887744 468999999999999999999999
Q ss_pred HHHHhhCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhccCCChHHHHH
Q 004720 505 TEAEKLEP-NIASAFLKFKIYLQKNDQEG-AINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 505 ~~A~~ldp-~~~t~~~~~ki~l~~gd~e~-Al~~l~~~~~~~~~~~~lL~l 553 (733)
+++++++| ++.+.+.+..++...|+.++ +.++++++....+.+|.+..+
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999 99999999999999999976 568889999998888886654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=145.11 Aligned_cols=195 Identities=14% Similarity=0.057 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++.++...|++++|+..+++++.++|.++. +++++|..+...|+ +++|+.+|++++++ +|.+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~lg~~~~~~g~---~~~A~~~~~~al~~---~P~~ 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE-------ALYWLARTQLKLGL---VNPALENGKTLVAR---TPRY 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCc
Confidence 34566788899999999999999999999998774 48889999999999 99999999999999 5532
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhcc-----------CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCCh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQK-----------GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRY 329 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~-----------~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~ 329 (733)
. .++..+|.+|... |++++|+.+++.+.+. .+.++..++..+.++...|++
T Consensus 73 ~--------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 73 L--------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV----NPRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp H--------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCH
T ss_pred H--------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCh
Confidence 2 2788899999999 9999999999999986 467788889999999999999
Q ss_pred HHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHH
Q 004720 330 NEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKL 409 (733)
Q Consensus 330 deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ 409 (733)
++|+..+.+.+.. . +++.
T Consensus 135 ~~A~~~~~~al~~-------------------------------------------------------~---~~~~---- 152 (217)
T 2pl2_A 135 DKAEASLKQALAL-------------------------------------------------------E---DTPE---- 152 (217)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------C---CCHH----
T ss_pred HHHHHHHHHHHhc-------------------------------------------------------c---cchH----
Confidence 9999998766531 0 0111
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
.+++.|..+...|+|++|+.+|+.++...|.+ ..++.+++.
T Consensus 153 --------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~ 193 (217)
T 2pl2_A 153 --------------------------------IRSALAELYLSMGRLDEALAQYAKALEQAPKD-------LDLRVRYAS 193 (217)
T ss_dssp --------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHH
Confidence 12347888999999999999999999988754 367899999
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A 507 (733)
+|..+|++++|++.++++
T Consensus 194 ~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTC--------------
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 999999999999999875
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=143.21 Aligned_cols=204 Identities=12% Similarity=0.037 Sum_probs=145.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
.+..+|.++...|++++|+.+++.+.+. ++.+|..++..+.++...|++++|+..+.+.+...|.....+...+.+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 6888999999999999999999999886 567888999999999999999999999999996656566666677777
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
|............ .......++..+++.+ +..|++..
T Consensus 83 ~~~~~~~~~~~~~----------~~g~~~~A~~~~~~al--~~~P~~~~------------------------------- 119 (217)
T 2pl2_A 83 YVALYRQAEDRER----------GKGYLEQALSVLKDAE--RVNPRYAP------------------------------- 119 (217)
T ss_dssp HHHHHHTCSSHHH----------HHHHHHHHHHHHHHHH--HHCTTCHH-------------------------------
T ss_pred HHHhhhhhhhhcc----------cccCHHHHHHHHHHHH--HhCcccHH-------------------------------
Confidence 7654110000000 0000123333333444 34443322
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.+.+.|..++..|+|++|+++|+.++.+. .+ ..++.++|.+|..+|++++|++.|+++++++| ++.
T Consensus 120 -----~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 120 -----LHLQRGLVYALLGERDKAEASLKQALALE-DT-------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 22358999999999999999999999886 33 35789999999999999999999999999999 888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
..+.+..++...|++++|++.+++.
T Consensus 187 ~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 187 LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999988765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-13 Score=149.08 Aligned_cols=261 Identities=16% Similarity=0.102 Sum_probs=198.2
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.+.-.|..++..|+++.|..+|++|++..... ... ......+...+.++...|+++.|+.++.+|+++.+..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~---~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFV-----KDR---IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-----CCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 44558999999999999999999999864321 111 1123566677899999999999999999999998887
Q ss_pred chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
+......+.+++++|..+...|+ +++|+.+|++|+++.++... ....+.++.++|.+|...|++++
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQ---YEDAISHFQKAYSMAEAEKQ-----------PQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHCCCHHH
Confidence 65567788999999999999999 99999999999999765421 23456689999999999999999
Q ss_pred HHHHHHHHHccCC-CCC-CCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHH
Q 004720 294 VIKCVRVLREGSF-DGG-DHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKG 371 (733)
Q Consensus 294 Al~~l~~a~~~~~-~~~-~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~ 371 (733)
|+.+++.+..+.. ... +..+.+++..+.++...|++++|+..+...+.. .+
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------~~- 295 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY--------------------------SQ- 295 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------HH-
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------------HH-
Confidence 9999988877421 112 334556788999999999999999998765431 00
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILF 451 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~ 451 (733)
.. ++|.. .. .+...|..+.
T Consensus 296 ---------------------~~----~~~~~-----------------------------------~~-~~~~l~~~~~ 314 (383)
T 3ulq_A 296 ---------------------KA----GDVIY-----------------------------------LS-EFEFLKSLYL 314 (383)
T ss_dssp ---------------------HH----TCHHH-----------------------------------HH-HHHHHHHHHT
T ss_pred ---------------------Hc----CCHHH-----------------------------------HH-HHHHHHHHHh
Confidence 00 00100 00 0123677788
Q ss_pred hcCC---HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 452 RSKD---YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 452 k~~~---y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.|+ +++|+++++..- + ++..+.++.++|.+|...|++++|.+++++++++..
T Consensus 315 ~~~~~~~~~~al~~~~~~~-----~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESKM-----L---YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp SSCCHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHCc-----C---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8888 777777777761 1 257788999999999999999999999999988743
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-13 Score=145.48 Aligned_cols=333 Identities=13% Similarity=0.023 Sum_probs=224.9
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHH-----------H
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAI-----------T 201 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~-----------~ 201 (733)
...+...-..+..++++.|...+++.-+..+.+. .+.+....+.++..| ..+..++++.+. .
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~-----~~~~~~~y~~ll~~r--~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQME-----EDQDLHLYYSLMEFR--HNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHH--HHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHH--HHHHHhhcCcccccccccccchhh
Confidence 3444455566789999999999988766554321 122222223444444 444556666666 6
Q ss_pred HHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHH
Q 004720 202 LLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFI 281 (733)
Q Consensus 202 ~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~L 281 (733)
.++++......... ..-...++..|..++..|+ +++|+.+|++|+++.++.+. ....+.++..+
T Consensus 86 ~~~~i~~~~~~~~~--~l~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~l 149 (383)
T 3ulq_A 86 LLLEIDKKQARLTG--LLEYYFNFFRGMYELDQRE---YLSAIKFFKKAESKLIFVKD-----------RIEKAEFFFKM 149 (383)
T ss_dssp HHHHHHHHTHHHHH--HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTGGGCCC-----------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCchh--HHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhCCC-----------HHHHHHHHHHH
Confidence 67766543221111 1112244567999999999 99999999999998665321 22356689999
Q ss_pred HHHHhccCcHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHH
Q 004720 282 SAIHLQKGEYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYF 358 (733)
Q Consensus 282 a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~ 358 (733)
|.+|...|++++|+.+++.+..+....+...| .+++..+.++...|++++|+..+...+..
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------- 213 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM---------------- 213 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------
Confidence 99999999999999999988885420011011 24577788889999999999887755431
Q ss_pred HhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhH
Q 004720 359 QAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIA 438 (733)
Q Consensus 359 ~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~ 438 (733)
.+ . .+ +. ..
T Consensus 214 ----------~~----------------------~------~~-~~--------------------------------~~ 222 (383)
T 3ulq_A 214 ----------AE----------------------A------EK-QP--------------------------------QL 222 (383)
T ss_dssp ----------HH----------------------H------TT-CH--------------------------------HH
T ss_pred ----------HH----------------------H------cC-Ch--------------------------------HH
Confidence 00 0 00 00 01
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CC-
Q 004720 439 MHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EP- 512 (733)
Q Consensus 439 ~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp- 512 (733)
....+.+.|..++..|+|++|+++|+.++.+.+.... .+..+.++.++|.+|..+|++++|.+++++|+++ +|
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1123456899999999999999999999986543221 1466899999999999999999999999999988 44
Q ss_pred ChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 513 NIASAFLKFKIYLQKND---QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd---~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.......+..++...|+ .++|+..++..... +...+.....+......|+.+.|...++..++.
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~-~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY-ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23334568889999999 77777777665221 112234444456777899999999888888773
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-12 Score=140.00 Aligned_cols=351 Identities=14% Similarity=0.014 Sum_probs=240.0
Q ss_pred HHHHhhhHHhc----cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHH
Q 004720 134 FYFKTGVVWHD----LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWE----VLEQNLAITLLNR 205 (733)
Q Consensus 134 ~~~k~G~~~~~----~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~----~g~~~~A~~~~~r 205 (733)
.....|..+.. .++++.|...|++|++.- . ...+...+..+.. .+++++|+.++.+
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----------Y------TPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------C------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 33455666666 899999999999998631 1 1223334667777 8999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHH
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFI 281 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~L 281 (733)
+.+. ..+ ..++++|..+.. .++ +++|+.||+++.+. + + ...+..|
T Consensus 105 a~~~--~~~-------~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~---~--~--------------~~a~~~L 153 (490)
T 2xm6_A 105 AALK--GLP-------QAQQNLGVMYHEGNGVKVD---KAESVKWFRLAAEQ---G--R--------------DSGQQSM 153 (490)
T ss_dssp HHHT--TCH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T--C--------------HHHHHHH
T ss_pred HHHC--CCH-------HHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHC---C--C--------------HHHHHHH
Confidence 9864 333 347788888877 677 99999999999875 2 1 1267889
Q ss_pred HHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 282 SAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 282 a~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
+.+|.. .+++++|+.+++.+.+. .+|.+.+..+.++.. .+++++|+..+...+... ....+...
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l 225 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHL 225 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 999987 67999999999988763 467888888999888 789999999998877532 23345567
Q ss_pred HHHHHHh----ch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004720 354 VEAYFQA----AG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV 428 (733)
Q Consensus 354 ~~ly~~~----~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~ 428 (733)
+.+|... .. +.|++.+++.+. ..++ .....+-.-+..+.+.+.+. .+ ....+.
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~--~a~~~lg~~y~~g~~~~~d~----~~------------A~~~~~ 283 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAE----QGNS--IAQFRLGYILEQGLAGAKEP----LK------------ALEWYR 283 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHT----TTCH--HHHHHHHHHHHHTTTSSCCH----HH------------HHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH----CCCH--HHHHHHHHHHHCCCCCCCCH----HH------------HHHHHH
Confidence 7777652 12 566666665431 1111 11111111111001111111 11 111111
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC---CHHHH
Q 004720 429 GDAAAKERIAMHAVLWNCASILFRS-----KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS---LIDRA 500 (733)
Q Consensus 429 g~~~~~~~~~~~~llW~~g~~~~k~-----~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~---~~~~A 500 (733)
+.. +. ......++.|..+... +++++|++||+.+.+.. ....+.+++.+|...| ++++|
T Consensus 284 --~a~-~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 284 --KSA-EQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---------DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp --HHH-TT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred --HHH-Hc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCcccHHHH
Confidence 000 00 0112334578888887 99999999999998742 2357899999999877 89999
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHH----cCCHHHHHHHHH
Q 004720 501 QEYITEAEKLEPNIASAFLKFKIYLQ----KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVA----CQALSVAVAALS 572 (733)
Q Consensus 501 ~e~~~~A~~ldp~~~t~~~~~ki~l~----~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~----~~~~~~a~~aL~ 572 (733)
++.|++|.+. .++...+.+..++.. .+|+++|++++++..... +++....-...... .++.+.|+..++
T Consensus 351 ~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 351 VEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999999876 468888899999998 899999999999988753 45543333344444 688999999998
Q ss_pred HHHhh
Q 004720 573 NLLNF 577 (733)
Q Consensus 573 ~Ll~~ 577 (733)
..++.
T Consensus 428 ~A~~~ 432 (490)
T 2xm6_A 428 TASTN 432 (490)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 88884
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-14 Score=136.04 Aligned_cols=169 Identities=15% Similarity=0.197 Sum_probs=137.1
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.+.+|+++|..+..+|+ +++|+.+|++++++ +|.+. .++..+|.+|...|++++|+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~---~~~A~~~~~~al~~---~p~~~--------------~~~~~la~~~~~~~~~~~a~~~~~ 63 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGD---FDGAIRAYKKVLKA---DPNNV--------------ETLLKLGKTYMDIGLPNDAIESLK 63 (184)
T ss_dssp CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35689999999999999 99999999999998 55332 278889999999999999999998
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhcc
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGR 379 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~ 379 (733)
.+... .+.++......+.++...+++++|+..+...+..
T Consensus 64 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~------------------------------------- 102 (184)
T 3vtx_A 64 KFVVL----DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL------------------------------------- 102 (184)
T ss_dssp HHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHhc----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------
Confidence 88875 3566777788888888888888888776544321
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
.|++.. .....|..+++.|+|++|
T Consensus 103 --------------------~~~~~~------------------------------------~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 103 --------------------NTVYAD------------------------------------AYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp --------------------CTTCHH------------------------------------HHHHHHHHHHHTTCHHHH
T ss_pred --------------------CccchH------------------------------------HHHHHHHHHHHhCCchhH
Confidence 121211 112378889999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
++.|+.++.+.|.+ +.++.++|.||.++|++++|+++|++|++++|
T Consensus 127 ~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 127 IEAYEKTISIKPGF-------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhcchh-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 99999999987744 46789999999999999999999999999998
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-14 Score=153.90 Aligned_cols=252 Identities=10% Similarity=-0.054 Sum_probs=193.0
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLE-QNLAITLLNRAKCLL 210 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~-~~~A~~~~~rA~~l~ 210 (733)
.......|..+...|+++.|+.+|++|+++.|.- ..++.+++.++...|+ +++|+.++++++.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--------------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 4456668889999999999999999999876531 2567788889999997 999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
|.++. +++++|..+...|+ +++|+..|++++++ +|.+. .+|.+++.+|...|+
T Consensus 163 P~~~~-------a~~~~g~~~~~~g~---~~eAl~~~~kal~l---dP~~~--------------~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 163 PKNYQ-------VWHHRRVLVEWLRD---PSQELEFIADILNQ---DAKNY--------------HAWQHRQWVIQEFKL 215 (382)
T ss_dssp TTCHH-------HHHHHHHHHHHHTC---CTTHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHHHTC
T ss_pred CCCHH-------HHHHHHHHHHHccC---HHHHHHHHHHHHHh---CccCH--------------HHHHHHHHHHHHcCC
Confidence 98764 58899999999999 99999999999999 65332 389999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh-cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHH
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG-LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETA 369 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~-~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~l 369 (733)
+++|+.+++.+.+. ++.++.+++.++.++.. .|.+++|+.... ++.+
T Consensus 216 ~~eAl~~~~~al~l----~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e----------------------------l~~~ 263 (382)
T 2h6f_A 216 WDNELQYVDQLLKE----DVRNNSVWNQRYFVISNTTGYNDRAVLERE----------------------------VQYT 263 (382)
T ss_dssp CTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHH----------------------------HHHH
T ss_pred hHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCcchHHHHHHH----------------------------HHHH
Confidence 99999999999987 46788899999999999 555588752210 1111
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHH
Q 004720 370 KGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASI 449 (733)
Q Consensus 370 k~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~ 449 (733)
+ +.+ +..|++...| .+.|..
T Consensus 264 ~----------------------~Al--~l~P~~~~a~------------------------------------~~l~~l 283 (382)
T 2h6f_A 264 L----------------------EMI--KLVPHNESAW------------------------------------NYLKGI 283 (382)
T ss_dssp H----------------------HHH--HHSTTCHHHH------------------------------------HHHHHH
T ss_pred H----------------------HHH--HHCCCCHHHH------------------------------------HHHHHH
Confidence 1 111 2344443322 124666
Q ss_pred HHhcC--CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC--------C-HHHHHHHHHHH-HhhCC-ChHH
Q 004720 450 LFRSK--DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS--------L-IDRAQEYITEA-EKLEP-NIAS 516 (733)
Q Consensus 450 ~~k~~--~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~--------~-~~~A~e~~~~A-~~ldp-~~~t 516 (733)
+.+.| +|++|+++++.. ...| +...++..++.||.++| + +++|+++|+++ .++|| ....
T Consensus 284 l~~~g~~~~~~a~~~~~~~-~~~p-------~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 284 LQDRGLSKYPNLLNQLLDL-QPSH-------SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 355 (382)
T ss_dssp HTTTCGGGCHHHHHHHHHH-TTTC-------CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHccCccchHHHHHHHHHh-ccCC-------CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 66666 799999999886 4444 34567889999999985 3 69999999999 99999 5554
Q ss_pred HHHHHHHH
Q 004720 517 AFLKFKIY 524 (733)
Q Consensus 517 ~~~~~ki~ 524 (733)
...+...+
T Consensus 356 w~~~~~~l 363 (382)
T 2h6f_A 356 WRYIGRSL 363 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-14 Score=142.07 Aligned_cols=218 Identities=17% Similarity=0.080 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+..++..+...|+++.|+.+++++....|..+ .+++.+|..+...|+ +++|+..|++++++ .+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~la~~~~~~~~---~~~A~~~~~~~~~~---~~~ 89 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA-------IPYINFANLLSSVNE---LERALAFYDKALEL---DSS 89 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHHc---CCc
Confidence 34666778889999999999999999999887754 357888999999999 99999999999998 432
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+ ..++..++.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...
T Consensus 90 ~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 90 A--------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRA----GMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred c--------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 237888999999999999999999988876 3566777888899999999999998887655
Q ss_pred hhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
+.. .|++..
T Consensus 152 ~~~---------------------------------------------------------~~~~~~-------------- 160 (243)
T 2q7f_A 152 VEL---------------------------------------------------------NENDTE-------------- 160 (243)
T ss_dssp HHH---------------------------------------------------------CTTCHH--------------
T ss_pred HHh---------------------------------------------------------CCccHH--------------
Confidence 431 111100
Q ss_pred HHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHH
Q 004720 420 DERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDR 499 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~ 499 (733)
.++..|..+++.|+|++|+++|+.++...|.+ ..++..++.+|..+|++++
T Consensus 161 ----------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 161 ----------------------ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-------ADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp ----------------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTH
T ss_pred ----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHccCHHH
Confidence 12236888889999999999999999887643 3578999999999999999
Q ss_pred HHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 500 AQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 500 A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
|.++++++++++| ++...+.+..+....+
T Consensus 212 A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 212 ALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999 7777777666655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-13 Score=134.95 Aligned_cols=210 Identities=14% Similarity=0.038 Sum_probs=171.1
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.+.+++.+|..+...|+ +++|+.+|++++++ .+.+ ..++..+|.+|...|++++|+.+++
T Consensus 36 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~---~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~ 95 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGN---TEQAKVPLRKALEI---DPSS--------------ADAHAALAVVFQTEMEPKLADEEYR 95 (252)
T ss_dssp HHHHHHHHHHHHHHTTC---TGGGHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhc---CCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36778999999999999 99999999999998 4321 2378889999999999999999999
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhcc
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGR 379 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~ 379 (733)
.+.+. .+.++..++..+.++...|++++|+..+...+..+
T Consensus 96 ~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------------------------ 135 (252)
T 2ho1_A 96 KALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT------------------------------------ 135 (252)
T ss_dssp HHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT------------------------------------
T ss_pred HHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc------------------------------------
Confidence 88875 34567777888999999999999988876554300
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
..|++.. .+.+.|..+++.|+|++|
T Consensus 136 -------------------~~~~~~~------------------------------------~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 136 -------------------LYPERSR------------------------------------VFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp -------------------TCTTHHH------------------------------------HHHHHHHHHHHTTCHHHH
T ss_pred -------------------cCcccHH------------------------------------HHHHHHHHHHHcCCHHHH
Confidence 1111100 122368888999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
+++|+.++...|.+ ..++..++.+|...|++++|.++++++++.+| ++...+.+..++...|++++|++.++
T Consensus 161 ~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQ-------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999887644 35789999999999999999999999999999 78888889999999999999999999
Q ss_pred HHHhccCCChHHH
Q 004720 539 AMTICLDFTTDFL 551 (733)
Q Consensus 539 ~~~~~~~~~~~lL 551 (733)
.+....+.++++.
T Consensus 234 ~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 234 QLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHCTTSHHHH
T ss_pred HHHHHCCCCHHHH
Confidence 9998877777643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-13 Score=143.94 Aligned_cols=278 Identities=10% Similarity=0.058 Sum_probs=191.0
Q ss_pred hHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH
Q 004720 140 VVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS 219 (733)
Q Consensus 140 ~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~ 219 (733)
+-.+-.|+|+.|+..+++.....| +. . .......+++++.+|+++.|+..+++. .|.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p---------~~--~--~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~---- 63 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSP---------ER--D--VERDVFLYRAYLAQRKYGVVLDEIKPS------SAP---- 63 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSH---------HH--H--HHHHHHHHHHHHHTTCHHHHHHHSCTT------SCH----
T ss_pred HHHHHHHHHHHHHHHHHhcccCCc---------hh--h--HHHHHHHHHHHHHCCCHHHHHHHhccc------CCh----
Confidence 445678888888887766543222 11 0 122233366999999999999876542 221
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
-...+..++..+...++ +++|+..|++.+..- ..|.+ ..++..+|.+|...|++++|+.+++
T Consensus 64 ~~~a~~~la~~~~~~~~---~~~A~~~l~~ll~~~-~~P~~--------------~~~~~~la~~~~~~g~~~~Al~~l~ 125 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSR---RDAIVAELDREMSRS-VDVTN--------------TTFLLMAASIYFYDQNPDAALRTLH 125 (291)
T ss_dssp HHHHHHHHHHHHHCSTT---HHHHHHHHHHHHHSC-CCCSC--------------HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcc-cCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 12345556777778888 999999888877630 01211 1267889999999999999999887
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH--hHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV--SAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l--s~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
. + .++...+..+.++.+.|++++|+..++.++...|......+ ....++...++
T Consensus 126 ~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~--------------- 181 (291)
T 3mkr_A 126 Q----G-----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK--------------- 181 (291)
T ss_dssp T----C-----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH---------------
T ss_pred C----C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH---------------
Confidence 6 1 46788899999999999999999999998854332221111 01122211111
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
...|..++++.+ +..|+++ .++++.|..+.+.|+|+
T Consensus 182 ------~~eA~~~~~~~l--~~~p~~~------------------------------------~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 182 ------LQDAYYIFQEMA--DKCSPTL------------------------------------LLLNGQAACHMAQGRWE 217 (291)
T ss_dssp ------HHHHHHHHHHHH--HHSCCCH------------------------------------HHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHHHH--HhCCCcH------------------------------------HHHHHHHHHHHHcCCHH
Confidence 233333333443 2234331 24556899999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDR-AQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~-A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
+|++.|+.++...|.+ +..+.+++.++..+|++++ +.++++++++++| ++... .+..+.+.+|+|+.
T Consensus 218 eA~~~l~~al~~~p~~-------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGH-------PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999998755 3568999999999999986 5789999999999 77654 34666777888887
Q ss_pred HH
Q 004720 536 QI 537 (733)
Q Consensus 536 ~l 537 (733)
.|
T Consensus 287 ~~ 288 (291)
T 3mkr_A 287 QY 288 (291)
T ss_dssp HH
T ss_pred Hc
Confidence 66
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-14 Score=140.39 Aligned_cols=212 Identities=10% Similarity=0.037 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
...+..++.+|..++..|+ +++|+.+|+++++. .+.+ ..++..+|.+|...|++++|+.+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~---~~~~--------------~~~~~~la~~~~~~~~~~~A~~~ 79 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGD---YEKAAEAFTKAIEE---NKED--------------AIPYINFANLLSSVNELERALAF 79 (243)
T ss_dssp -------------------------CCTTHHHHHTT---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHh---Cccc--------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456778899999999999 99999999999885 3321 23778889999999999999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
++.+.+. .+.++..++..+.++...|++++|+..+...+..
T Consensus 80 ~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------------------------- 120 (243)
T 2q7f_A 80 YDKALEL----DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA----------------------------------- 120 (243)
T ss_dssp HHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHc----CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------
Confidence 9988875 3456777788899999999999998887655431
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
.|+++. .+...|..+++.|+|+
T Consensus 121 ----------------------~~~~~~------------------------------------~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 121 ----------------------GMENGD------------------------------------LFYMLGTVLVKLEQPK 142 (243)
T ss_dssp ----------------------TCCSHH------------------------------------HHHHHHHHHHHTSCHH
T ss_pred ----------------------CCCCHH------------------------------------HHHHHHHHHHHhccHH
Confidence 111110 1223688889999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQ 536 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~ 536 (733)
+|+++|+.++...|.+ ..++..++.+|...|++++|+++++++++.+| ++...+.+..++...|++++|++.
T Consensus 143 ~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 143 LALPYLQRAVELNEND-------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp HHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999887744 35789999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHhccCCChHHHHH
Q 004720 537 ILAMTICLDFTTDFLSL 553 (733)
Q Consensus 537 l~~~~~~~~~~~~lL~l 553 (733)
++.+....+.++.....
T Consensus 216 ~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHccCcchHHHHHH
Confidence 99999987777765444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-13 Score=144.09 Aligned_cols=187 Identities=13% Similarity=0.039 Sum_probs=148.7
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
..+...|..++..|+++.|..+|++|.+..+.. ..+ ......+...+.++...|+++.|+.++.+|.++.+.
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~---~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----SDD---IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----CCh---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 356678999999999999999999999875321 111 112346666788999999999999999999999887
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
.+......+..++++|..+...|+ +++|..+|++|+++.++.. + ......++.+||.+|...|+++
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~-~----------~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKH---YDKALPHLEAALELAMDIQ-N----------DRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcC-C----------HHHHHHHHHHHHHHHHHCCCHH
Confidence 655445688999999999999999 9999999999999976531 1 2245668999999999999999
Q ss_pred HHHHHHHHHHccCC-CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 293 SVIKCVRVLREGSF-DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 293 kAl~~l~~a~~~~~-~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+|+.+++.+..+.. ...+..+.+.+..+.++...|++++|+..+...+.
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988877221 01233455668899999999999999999876653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-12 Score=134.40 Aligned_cols=304 Identities=11% Similarity=-0.010 Sum_probs=217.0
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
........-.|...+..|+++.|...+++|++..+. .+ .......+...+.+++..|+++.|+..+.++..
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-------~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-------GW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-------TC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-------Cc--hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334456667788889999999999999999875421 11 111234566678889999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
+.+..+.. ...+..++++|..+...|+ +++|..++++++++........ .+....++.+++.+|...
T Consensus 82 ~~~~~~~~-~~~~~~~~~la~~~~~~G~---~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 82 MARQHDVW-HYALWSLIQQSEILFAQGF---LQTAWETQEKAFQLINEQHLEQ---------LPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCTT---------STHHHHHHHHHHHHHHHT
T ss_pred HHHhcCcH-HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHhcccc---------CcHHHHHHHHHHHHHHHh
Confidence 98875432 3456778899999999999 9999999999999866532110 122345788899999999
Q ss_pred CcHHHHHHHHHHHHccCCCCCC-CCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHH
Q 004720 289 GEYESVIKCVRVLREGSFDGGD-HHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAE 367 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~-~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~ 367 (733)
|++++|..+++.+....+..++ ....++...+.++...|++++|+..+...+...+
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~----------------------- 205 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG----------------------- 205 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-----------------------
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----------------------
Confidence 9999999999988875421011 1123446778888899999999888765542100
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHH
Q 004720 368 TAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCA 447 (733)
Q Consensus 368 ~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g 447 (733)
. ...+ ..+ ........+
T Consensus 206 ------------~-----------------~~~~---~~~-------------------------------~~~~~~~~~ 222 (373)
T 1hz4_A 206 ------------N-----------------GKYH---SDW-------------------------------ISNANKVRV 222 (373)
T ss_dssp ------------T-----------------SCCC---HHH-------------------------------HHHHHHHHH
T ss_pred ------------c-----------------cCcc---hhH-------------------------------HHHHHHHHH
Confidence 0 0000 000 000000134
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC------Ch-HHHHHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP------NI-ASAFLK 520 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp------~~-~t~~~~ 520 (733)
..+...|++++|..++..++...+.+. ......+.+++.+|...|++++|.+.+++++...+ .. .....+
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANN---HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTC---GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 556789999999999999998665432 12234578899999999999999999999877643 11 355678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 004720 521 FKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
..++...|+.++|...++.....
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 89999999999999999887665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-13 Score=142.07 Aligned_cols=267 Identities=13% Similarity=-0.008 Sum_probs=186.9
Q ss_pred hHHHHHHHHHHHhhhH---HhccC---CcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHH
Q 004720 126 SPAIKSASFYFKTGVV---WHDLK---KYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLA 199 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~---~~~~g---~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A 199 (733)
...++.+...++++.+ |+..+ +++.|..+|++|.. ++..+|++++|
T Consensus 5 ~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------------------~~~~~g~~~~A 56 (292)
T 1qqe_A 5 VELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAAT----------------------------IYRLRKELNLA 56 (292)
T ss_dssp HHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHH----------------------------HHHHTTCTHHH
T ss_pred HHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHH----------------------------HHHHcCCHHHH
Confidence 4566777777776544 45432 47788888877642 44578999999
Q ss_pred HHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHH
Q 004720 200 ITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLR 279 (733)
Q Consensus 200 ~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~ 279 (733)
+.+|.+|..+.+.... ....+.+|.++|..+...|+ +++|+.+|++|+++..... + ....+.++.
T Consensus 57 ~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~~g-~----------~~~~a~~~~ 121 (292)
T 1qqe_A 57 GDSFLKAADYQKKAGN-EDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTHRG-Q----------FRRGANFKF 121 (292)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHcC-C----------HHHHHHHHH
Confidence 9999999999775332 24467889999999999999 9999999999999955421 1 122356899
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHHHccCCCCCCCC----CcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH
Q 004720 280 FISAIHLQK-GEYESVIKCVRVLREGSFDGGDHH----ASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV 354 (733)
Q Consensus 280 ~La~~yl~~-~~~ekAl~~l~~a~~~~~~~~~~~----p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~ 354 (733)
++|.+|... |++++|+.+++.+..+.+ ...+ +.++...+.++...|++++|+..+...+...+.....
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 194 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYA--QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS----- 194 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-----
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-----
Confidence 999999996 999999999999988532 1111 2234667889999999999999887665321100000
Q ss_pred HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 355 EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 355 ~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
+ .
T Consensus 195 --------------------------------------~---------~------------------------------- 196 (292)
T 1qqe_A 195 --------------------------------------Q---------W------------------------------- 196 (292)
T ss_dssp --------------------------------------G---------G-------------------------------
T ss_pred --------------------------------------c---------H-------------------------------
Confidence 0 0
Q ss_pred HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCC
Q 004720 435 ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYL--GLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl--~l~~~~~A~e~~~~A~~ldp 512 (733)
.....+.+.|..+...|+|++|+..|+.++.+.|.... ....+.+..++.+|. ..+++++|++.|+++.+++|
T Consensus 197 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 197 ---SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD--SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp ---GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 00002234788899999999999999999999886543 244567788888776 56889999999999999988
Q ss_pred ChHHHHHHHHHHH
Q 004720 513 NIASAFLKFKIYL 525 (733)
Q Consensus 513 ~~~t~~~~~ki~l 525 (733)
.....+...+-.+
T Consensus 272 ~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 272 WKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444333
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=140.60 Aligned_cols=280 Identities=14% Similarity=0.067 Sum_probs=185.4
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+......|..+...|+++.|..+|++|++..+...... . ......+...+.++...|++++|+.++.++..+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--H----PDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--S----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999999866432100 0 112356667789999999999999999999988
Q ss_pred hhcC-chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 210 LFGL-FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 210 ~~~~-~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
.... .......+.+++++|..+...|+ +++|..+|++++++..+..+.. ......++..+|.+|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKD---------HPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHc
Confidence 6431 11123466789999999999999 9999999999999865421111 122455889999999999
Q ss_pred CcHHHHHHHHHHHHccCC-CCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhh
Q 004720 289 GEYESVIKCVRVLREGSF-DGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTA 364 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~-~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~ 364 (733)
|++++|+.+++.+..... ..++.+|. .++..+.++...|++++|+..+...+...+. .
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------------~---- 228 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE--------------R---- 228 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------H----
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------h----
Confidence 999999999988877411 00122343 4577889999999999999998876531000 0
Q ss_pred hHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 365 GAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 365 a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
.+- ...+.....+. . ...+.
T Consensus 229 ----------------------------~~~--~~~~~~~~~~~-~-----------------------------~~~~~ 248 (311)
T 3nf1_A 229 ----------------------------EFG--SVDDENKPIWM-H-----------------------------AEERE 248 (311)
T ss_dssp ----------------------------HHC--------CCHHH-H-----------------------------HHHHH
T ss_pred ----------------------------cCC--CCCcchHHHHH-H-----------------------------HHHHH
Confidence 000 00000000000 0 00111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
..+......+.|.+|+.+|..+.... +..+.++.+++.+|...|++++|.+++++++++.|
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HC-------CCSCCCC---------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 24555667788888888888877643 46678899999999999999999999999998866
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=129.72 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHH
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVE 355 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ 355 (733)
.++.+||.+|...|+|++|+.+++.+.+. ++.++.+++..+.++...|++++|+..+...+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------------- 68 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------------- 68 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence 48999999999999999999999999987 4678888899999999999999999887654321
Q ss_pred HHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 356 AYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 356 ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
.|++..
T Consensus 69 --------------------------------------------~~~~~~------------------------------ 74 (184)
T 3vtx_A 69 --------------------------------------------DTTSAE------------------------------ 74 (184)
T ss_dssp --------------------------------------------CCCCHH------------------------------
T ss_pred --------------------------------------------CchhHH------------------------------
Confidence 111111
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
...+.|..+...++|+.|++.+..++...|.+ ...+..+|.+|..+|++++|++.|+++++++| ++
T Consensus 75 ------~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 75 ------AYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 11136778889999999999999999988755 35689999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
...+.+..++...|++++|++++++..+..+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999888743
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=155.99 Aligned_cols=219 Identities=9% Similarity=-0.035 Sum_probs=170.7
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCH-HHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSL-NDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~-e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
.++++.|+..+.++....|.. +..++++|..+...|+ | ++|+.+|++++++ +|.+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~-------a~~~~~lg~~~~~~g~---~~~~A~~~~~~al~~---~p~~----------- 136 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVE-------AQALMLKGKALNVTPD---YSPEAEVLLSKAVKL---EPEL----------- 136 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC-------HHHHHHHHHHHTSSSS---CCHHHHHHHHHHHHH---CTTC-----------
T ss_pred HHHHHHHHHHHHHHhccCchh-------HHHHHHHHHHHHhccc---cHHHHHHHHHHHHhh---CCCC-----------
Confidence 344667777777666555543 3568999999999999 9 9999999999998 5422
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhc---------CChHHHHHHHHHhhhc
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGL---------GRYNEAELELRGMVEI 342 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~---------g~~deAi~~l~~~l~~ 342 (733)
..++..||.+|...|++++|+.+++.+.+.. +. +..++..+.++... |++++|+..+.+.+..
T Consensus 137 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 137 ---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC----KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC----CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 2378899999999999999999999999863 33 56668888888888 7777777776655432
Q ss_pred cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 343 KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 343 ~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
.|++...+
T Consensus 209 ---------------------------------------------------------~p~~~~~~--------------- 216 (474)
T 4abn_A 209 ---------------------------------------------------------DVLDGRSW--------------- 216 (474)
T ss_dssp ---------------------------------------------------------CTTCHHHH---------------
T ss_pred ---------------------------------------------------------CCCCHHHH---------------
Confidence 12221111
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRS--------KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~--------~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
.+.|..++.. |+|++|+++|+.++.+.|.. .+.+.++.++|.+|..+
T Consensus 217 ---------------------~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~lg~~~~~~ 271 (474)
T 4abn_A 217 ---------------------YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA----SSNPDLHLNRATLHKYE 271 (474)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG----GGCHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHHHc
Confidence 1234444444 88999999999999987732 25567899999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
|++++|.+.+++|++++| ++...+.+..++...|++++|++.+.++
T Consensus 272 g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999 8889999999999999999999876443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-13 Score=135.52 Aligned_cols=255 Identities=11% Similarity=0.024 Sum_probs=172.0
Q ss_pred HhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHH
Q 004720 142 WHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLA 221 (733)
Q Consensus 142 ~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La 221 (733)
....|+++.|+..|+++++..+ . .. ......+...+.++...|++++|+.+++++..+.|..+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~------~-~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------ 78 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRA------L-TD---DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------ 78 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSC------C-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------
T ss_pred cCccchHHHHHHHHHHHHhccc------c-cC---chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH------
Confidence 3445677777777777775410 0 01 112356677789999999999999999999999887653
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
+++++|..+...|+ +++|+.+|++++++ .|.+. .++..+|.+|...|++++|+.+++.+
T Consensus 79 -~~~~la~~~~~~~~---~~~A~~~~~~al~~---~~~~~--------------~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 79 -VFNYLGIYLTQAGN---FDAAYEAFDSVLEL---DPTYN--------------YAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp -HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCT--------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHccC---HHHHHHHHHHHHhc---Ccccc--------------HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 57889999999999 99999999999998 44221 27889999999999999999999999
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCC
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~ 381 (733)
.+.. +.++.. .....++...|++++|+..+...+...+.....+ ..+..+.... .
T Consensus 138 ~~~~----~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------~ 192 (275)
T 1xnf_A 138 YQDD----PNDPFR-SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNI-------------------S 192 (275)
T ss_dssp HHHC----TTCHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSS-------------------C
T ss_pred HHhC----CCChHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhc-------------------C
Confidence 8853 444433 3344455777999999999987774333222221 1222221111 1
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAE 461 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~ 461 (733)
...++..+.+.+ +..|.. .......+.+.|..+++.|+|++|++
T Consensus 193 --~~~a~~~~~~~~--~~~~~~--------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 193 --EQTLMERLKADA--TDNTSL--------------------------------AEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp --HHHHHHHHHHHC--CSHHHH--------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHHHHh--cccccc--------------------------------cccccHHHHHHHHHHHHcCCHHHHHH
Confidence 122233333332 111100 00011234458999999999999999
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
+|+.++...|.+. ...+.++..+|++++|++.|
T Consensus 237 ~~~~al~~~p~~~----------~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 237 LFKLAVANNVHNF----------VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCCTTC----------HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhCCchhH----------HHHHHHHHHHHHHHhhHHHH
Confidence 9999999988653 23377899999999999987
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-12 Score=131.93 Aligned_cols=123 Identities=7% Similarity=-0.007 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
.+...+..+...|++++|+.+++++.+ +..+ ..++++|..+.. .++ +++|+.+|+++++. +
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~-------~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~---~ 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN-------SGCFNLGVLYYQGQGVEKN---LKKAASFYAKACDL---N 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHcCCCcCCC---HHHHHHHHHHHHHC---C
Confidence 445557788889999999999999987 4333 357888888888 888 99999999999886 2
Q ss_pred CCCcccchhhhhhhhcHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCCh
Q 004720 258 LGEARTREETTELKGLKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRY 329 (733)
Q Consensus 258 ~~~~~~~~~~~~~~el~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~ 329 (733)
+ ...+..||.+|.. .+++++|+.+++.+.+. .+|.+.+..+.++.. .+++
T Consensus 73 --~--------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 73 --Y--------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL------KYAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp --C--------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred --C--------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc------CCccHHHHHHHHHHcCCCcccCH
Confidence 1 1267788999988 88999999999888773 367777888888888 8888
Q ss_pred HHHHHHHHHhhh
Q 004720 330 NEAELELRGMVE 341 (733)
Q Consensus 330 deAi~~l~~~l~ 341 (733)
++|+..+.+.+.
T Consensus 131 ~~A~~~~~~a~~ 142 (273)
T 1ouv_A 131 KKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888776553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-13 Score=143.12 Aligned_cols=258 Identities=12% Similarity=0.022 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.++..++..+...|+++.|+..+.+|..+.+..+. ....+.+++++|..+...|+ +++|+.++++|+++.++....
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQ---THVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhCCCc
Confidence 35567888999999999999999999999876443 35688899999999999999 999999999999997764321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCC--CCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGD--HHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~--~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
....+.++.++|.+|...|+|++|+.+++.+..+....++ ..+.+++..+.++...|++++|+..+..
T Consensus 178 ----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 178 ----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1134668999999999999999999999888774210000 0112346677788888888888888765
Q ss_pred hhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 339 MVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 339 ~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
.+.. .+ .. .+|..
T Consensus 248 al~~--------------------------~~----------------------~~----~~~~~--------------- 260 (378)
T 3q15_A 248 AAKV--------------------------SR----------------------EK----VPDLL--------------- 260 (378)
T ss_dssp HHHH--------------------------HH----------------------HH----CGGGH---------------
T ss_pred HHHH--------------------------HH----------------------hh----CChhH---------------
Confidence 5330 00 00 11100
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC--
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL-- 496 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~-- 496 (733)
...+.+.|..+++.|+|++|+++|+.++.+.+.... +.....+..++..|...++
T Consensus 261 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 261 ---------------------PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH--KFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC--SCHHHHHHHHHHHHSSSCCHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhCCCcHH
Confidence 113446899999999999999999999987764321 2333356888999999999
Q ss_pred -HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 497 -IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 497 -~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
+.+|++++++.. ..| .......++.+|...|++++|+++++.....
T Consensus 318 ~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 318 KIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888887631 122 3345567899999999999999999887664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-12 Score=125.38 Aligned_cols=208 Identities=11% Similarity=0.020 Sum_probs=162.8
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
..+++.+|..++..|+ +++|+.+|++++++ .+.+ ..++..++.+|...|++++|+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~---~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 67 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQD---YRQATASIEDALKS---DPKN--------------ELAWLVRAEIYQYLKVNDKAQESFRQ 67 (225)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---HHHHHHHHHHHHHh---Cccc--------------hHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4568888999999999 99999999999987 4321 12678889999999999999999988
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhc-CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhcc
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGL-GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGR 379 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~-g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~ 379 (733)
+... .+.++..++..+.++... |++++|+..+...+..+
T Consensus 68 a~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------ 107 (225)
T 2vq2_A 68 ALSI----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP------------------------------------ 107 (225)
T ss_dssp HHHH----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST------------------------------------
T ss_pred HHHh----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc------------------------------------
Confidence 8875 345667778888889999 99998888876554310
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
..|++.. .+.+.|..+++.|+|++|
T Consensus 108 -------------------~~~~~~~------------------------------------~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 108 -------------------TYPTPYI------------------------------------ANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp -------------------TCSCHHH------------------------------------HHHHHHHHHHHTTCHHHH
T ss_pred -------------------CCcchHH------------------------------------HHHHHHHHHHHcCCHHHH
Confidence 1111100 122468888899999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP--NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp--~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
+++|+.++...|.+ ...+..++.+|...|++++|.++++++++.+| ++........++...|+.+.|...+
T Consensus 133 ~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 133 EAYLKRSLAAQPQF-------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHSTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999887644 35688999999999999999999999999888 4566667788888999999999999
Q ss_pred HHHHhccCCChHH
Q 004720 538 LAMTICLDFTTDF 550 (733)
Q Consensus 538 ~~~~~~~~~~~~l 550 (733)
+.+....+.+++.
T Consensus 206 ~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 206 AQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHCTTCHHH
T ss_pred HHHHHhCCCCHHH
Confidence 9988776666653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-10 Score=128.17 Aligned_cols=348 Identities=11% Similarity=0.004 Sum_probs=236.6
Q ss_pred HHHHHH----ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 187 SRTAWE----VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 187 A~~a~~----~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
+..+.. .+++++|+..++++.+. ..+ ..++.+|..+.. .++ +++|+.||+++.+. +
T Consensus 46 g~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~---~- 109 (490)
T 2xm6_A 46 GYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT-------PAEYVLGLRYMNGEGVPQD---YAQAVIWYKKAALK---G- 109 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T-
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHC---C-
Confidence 455666 89999999999999865 333 358888888888 788 99999999999875 2
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYN 330 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~d 330 (733)
+ ...+..|+.+|.. .+++++|+.+++.+... .+|.+.+..+.++.. .++++
T Consensus 110 -~--------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 110 -L--------------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------GRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp -C--------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred -C--------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 1 1267789999988 77999999999998763 467888888888887 68999
Q ss_pred HHHHHHHHhhhccCCchHHHHhHHHHHHH----hch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchH
Q 004720 331 EAELELRGMVEIKGIPECIWVSAVEAYFQ----AAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEA 405 (733)
Q Consensus 331 eAi~~l~~~l~~~~~~~~~~ls~~~ly~~----~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~ 405 (733)
+|+..+.+.+.. + ....+..++.+|.. ... +.|++.+++.+. ..++ .....+...+....+.+.+
T Consensus 169 ~A~~~~~~a~~~-~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~--~a~~~lg~~y~~g~g~~~~-- 238 (490)
T 2xm6_A 169 MAREWYSKAAEQ-G-NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT----SGDE--LGQLHLADMYYFGIGVTQD-- 238 (490)
T ss_dssp HHHHHHHHHHHT-T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCH--HHHHHHHHHHHHTSSSCCC--
T ss_pred HHHHHHHHHHHC-C-CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH----CCCH--HHHHHHHHHHHcCCCCCCC--
Confidence 999999888753 2 34455677788876 223 677777776532 1111 1222222222110111212
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCchhhhhhH
Q 004720 406 AVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPFDVENRILRA 481 (733)
Q Consensus 406 ~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~~~~~~~~~a 481 (733)
..++... ...... . ......++.|..+.. .+++++|++||+.+.+. ...
T Consensus 239 --~~~A~~~--------~~~a~~-------~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---------~~~ 291 (490)
T 2xm6_A 239 --YTQSRVL--------FSQSAE-------Q-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---------GNS 291 (490)
T ss_dssp --HHHHHHH--------HHHHHT-------T-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---------TCH
T ss_pred --HHHHHHH--------HHHHHH-------C-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---------CCH
Confidence 1111111 000000 0 011234457888888 89999999999999764 123
Q ss_pred HHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCChHHHHH
Q 004720 482 KSFRVLCLCYLGL-----SLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKN---DQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 482 kl~r~la~cyl~l-----~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~g---d~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
..+.+++.+|... +++++|++.+++|.+.+ ++..++.+..++...| |.++|++.+++.... .+++....
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 368 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFN 368 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHH
Confidence 5789999999998 99999999999998764 4567778888888766 889999999999886 34654433
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHh---hcCChhHHHHHHHHHHHHh
Q 004720 554 AAHEAVA----CQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQ---ETGNESEVLKYMKRAHART 620 (733)
Q Consensus 554 a~~~a~~----~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~---~~~~~~~~l~~~~~A~~~l 620 (733)
-...... .++.+.|+..++...+. + .. .+.-.+-.+..+ .+++.++...+|++|...-
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~---~~---~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQ---G---LS---AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhC---C---CH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3344455 67888888888877762 2 11 222234344333 2678889999999999753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.5e-12 Score=123.52 Aligned_cols=203 Identities=12% Similarity=0.023 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH
Q 004720 275 FKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV 354 (733)
Q Consensus 275 ~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~ 354 (733)
..++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------ 71 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------------ 71 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------
Confidence 447888999999999999999999988875 3456777788889999999999998887655431
Q ss_pred HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 355 EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 355 ~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
.|++..
T Consensus 72 ---------------------------------------------~~~~~~----------------------------- 77 (225)
T 2vq2_A 72 ---------------------------------------------KPDSAE----------------------------- 77 (225)
T ss_dssp ---------------------------------------------CTTCHH-----------------------------
T ss_pred ---------------------------------------------CCCChH-----------------------------
Confidence 111100
Q ss_pred HhhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 435 ERIAMHAVLWNCASILFRS-KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~-~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..++.. |+|++|+++|+.++. .|.+ +....++.+++.+|...|++++|+++++++++.+|
T Consensus 78 -------~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 78 -------INNNYGWFLCGRLNRPAESMAYFDKALA-DPTY----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp -------HHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -------HHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 122368888999 999999999999998 4333 35567899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLD-FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~-~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
++...+.+..++...|++++|++.++.+....+ .++..+...+......|+.+.+...++.+.+..+
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999998887 8888888888888889999999888888887443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-12 Score=127.16 Aligned_cols=205 Identities=17% Similarity=0.081 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
...++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------- 101 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD---------- 101 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------
Confidence 3568999999999999999999999988875 35567788899999999999999999877554311
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
|++..
T Consensus 102 -----------------------------------------------~~~~~---------------------------- 106 (252)
T 2ho1_A 102 -----------------------------------------------SRNAR---------------------------- 106 (252)
T ss_dssp -----------------------------------------------TTCHH----------------------------
T ss_pred -----------------------------------------------cCcHH----------------------------
Confidence 11100
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..++..|+|++|+++|+.++. .+.+ +....++.+++.+|...|++++|+++++++++.+|
T Consensus 107 --------~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 107 --------VLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLY----PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTC----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred --------HHHHHHHHHHHHhHHHHHHHHHHHHHh-CccC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 122368888999999999999999998 2222 35678899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
++...+.+..++...|++++|+..++.+....+.+++.+...+......|+.+.|...++.+++..+.
T Consensus 174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 88899999999999999999999999999888878887777778888899999999999999985433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-12 Score=129.48 Aligned_cols=211 Identities=11% Similarity=0.032 Sum_probs=159.9
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC-CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL-GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~-~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
..+++.|..++..|+ +++|+.+|++++++ .+ .+ ..++..+|.+|...|++++|+.+++.
T Consensus 8 ~~~~~~g~~~~~~~~---~~~A~~~~~~al~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~ 67 (228)
T 4i17_A 8 NQLKNEGNDALNAKN---YAVAFEKYSEYLKL---TNNQD--------------SVTAYNCGVCADNIKKYKEAADYFDI 67 (228)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---TTTCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC---HHHHHHHHHHHHhc---cCCCC--------------cHHHHHHHHHHHHhhcHHHHHHHHHH
Confidence 468999999999999 99999999999998 43 11 12677799999999999999999999
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccC
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRC 380 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~ 380 (733)
+.+. .+.++.+++..+.++...|++++|+..+...+...|....+
T Consensus 68 al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------- 112 (228)
T 4i17_A 68 AIKK----NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI------------------------------- 112 (228)
T ss_dssp HHHT----TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------------------------
T ss_pred HHHh----CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-------------------------------
Confidence 9886 45677788999999999999999999988766422211110
Q ss_pred CchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHH
Q 004720 381 HVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASA 460 (733)
Q Consensus 381 ~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~ 460 (733)
+. .+...+.+.|..+++.|+|++|+
T Consensus 113 --------------------------~~-----------------------------~~~~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 113 --------------------------EK-----------------------------LYAIYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp --------------------------HH-----------------------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HH-----------------------------HHHHHHHHHhHHHHHhccHHHHH
Confidence 00 00112335899999999999999
Q ss_pred HHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 461 ~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
++|+.++...|.+ ..+..+.+++.+|...| ...++++..+.+ .+.. .........+++++|+.++++
T Consensus 138 ~~~~~al~~~p~~-----~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 138 ENYKHATDVTSKK-----WKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEK--YASEKAKADAAFKKAVDYLGE 205 (228)
T ss_dssp HHHHHHTTSSCHH-----HHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCc-----ccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986631 05678999999997654 456777777766 4322 233344556788999999999
Q ss_pred HHhccCCChHHHHHH
Q 004720 540 MTICLDFTTDFLSLA 554 (733)
Q Consensus 540 ~~~~~~~~~~lL~la 554 (733)
..+..+.+++.+.+-
T Consensus 206 a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 206 AVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HhhcCCCCHHHHHHH
Confidence 999988888766554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-11 Score=136.52 Aligned_cols=407 Identities=9% Similarity=-0.015 Sum_probs=242.3
Q ss_pred hccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHH
Q 004720 143 HDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLAN 222 (733)
Q Consensus 143 ~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~ 222 (733)
...|+++.|...|++|++..|. . ..+....+......|+++.|...|+||+...|. .+
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~--------~------~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~~------- 80 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPS--------S------GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-ID------- 80 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-HH-------
T ss_pred HHhCCHHHHHHHHHHHHHHCCC--------C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hH-------
Confidence 4578999999999999987652 1 234445567778899999999999999998873 32
Q ss_pred HHHHHhHHH-HhcCCCCCHHHHH----HHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc---------c
Q 004720 223 QYLTFAKSA-LSKNETNSLNDAL----KLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ---------K 288 (733)
Q Consensus 223 ~~~~~G~~~-~~~~~~~~~e~A~----~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~---------~ 288 (733)
+.+..+... -..|+ +++|. .+|+++++.+..++.. ..+|...+..... .
T Consensus 81 lw~~~~~~~~~~~~~---~~~a~~~~~~~~~~al~~~g~~~~~--------------~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 81 LWKCYLSYVRETKGK---LPSYKEKMAQAYDFALDKIGMEIMS--------------YQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHHHHHHHHHHTTT---STTHHHHHHHHHHHHHHHTTTSTTC--------------HHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHCCCCccc--------------HHHHHHHHHHHhcCCCcccHHHH
Confidence 233344322 23455 55554 4778887764332210 1245444444433 5
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHH-HHHHHHH--------------HhcCChHHHHHHHHH------hhhc-----
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLP-VLAMKAW--------------LGLGRYNEAELELRG------MVEI----- 342 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~-~lk~~il--------------~~~g~~deAi~~l~~------~l~~----- 342 (733)
|++++|..+|+.+.+.+ .++... +....-+ ...+++++|...+.. .+..
T Consensus 144 ~~~~~a~~~y~~al~~P-----~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNP-----MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp HHHHHHHHHHHHHTTSC-----CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hHHHHHHHHHHHHHhch-----hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 78999999999998742 222211 1111111 123456666554432 2211
Q ss_pred cCCc-------hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCch--HHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 004720 343 KGIP-------ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS--AKAAVRMAHRVAGDEGDGVSEAAVKLRAKA 413 (733)
Q Consensus 343 ~~~~-------~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~--~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~ 413 (733)
++.. ..+|...+.+-..+.. .-.+.. ...++.+.++.+ ...|.++..|+..+..
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~---------------~~~~~~~~~~~a~~~y~~al--~~~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPL---------------RTEDQTLITKRVMFAYEQCL--LVLGHHPDIWYEAAQY 281 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSS---------------CCSCSHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCc---------------cCCcchhHHHHHHHHHHHHH--HhCCCCHHHHHHHHHH
Confidence 1110 1222222111110000 000000 123334455555 3456666666555544
Q ss_pred HHH-------hhhHH-------HHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhh
Q 004720 414 VAE-------LVSDE-------RVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRI 478 (733)
Q Consensus 414 l~~-------l~~~e-------~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~ 478 (733)
+.. ....+ .+.+++. +......+-...+|. .|..+.+.|++++|.+.|+.++...|.+.
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~--~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---- 355 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYE--RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---- 355 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHH--HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH----
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHH--HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc----
Confidence 432 11111 2333322 000001112234554 78888889999999999999998766442
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI-YLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki-~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.++.+.+.++.+.|++++|+++|++|++..| ..........+ +...|+.++|...++...+..+.++++...-+.
T Consensus 356 --~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 356 --TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 433 (530)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35788889999999999999999999999887 44443333323 335899999999999888887878887777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 004720 557 EAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~ 622 (733)
.-.+.|+.+.|+..++..++..+.+ |.....+....+++. ...|+.+.+.++++++.+..++
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~---~~~~~~lw~~~~~~e-~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLP---PEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSC---GGGCHHHHHHHHHHH-HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCC---HHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCch
Confidence 7777899999999999888843333 333334443344442 3358888888899998887764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-12 Score=127.99 Aligned_cols=222 Identities=13% Similarity=0.064 Sum_probs=175.5
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhh
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWE----VLEQNLAITLLNRAKCL 209 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~----~g~~~~A~~~~~rA~~l 209 (733)
.....|..++..|+++.|..+|++|++.- . ...+...+.++.. .|++++|+.+++++.++
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK----------E------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------C------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 44677999999999999999999999711 1 1234445777888 99999999999999977
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y 285 (733)
. .+ ..++++|..+.. .++ +++|+.+|+++++. + + ...+..|+.+|
T Consensus 72 ~--~~-------~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~---~--~--------------~~a~~~lg~~~ 120 (273)
T 1ouv_A 72 N--YS-------NGCHLLGNLYYSGQGVSQN---TNKALQYYSKACDL---K--Y--------------AEGCASLGGIY 120 (273)
T ss_dssp T--CH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T--C--------------HHHHHHHHHHH
T ss_pred C--CH-------HHHHHHHHHHhCCCCcccC---HHHHHHHHHHHHHc---C--C--------------ccHHHHHHHHH
Confidence 4 22 458899999999 999 99999999999986 2 1 12788899999
Q ss_pred hc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 286 LQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 286 l~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
.. .+++++|+.+++.+.+. .++...+..+.++.. .+++++|+..+.+.+..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------------- 179 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------------- 179 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------
T ss_pred HcCCCcccCHHHHHHHHHHHHhc------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------------
Confidence 98 89999999999999873 256666777778777 78888888776644321
Q ss_pred HHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhh
Q 004720 358 FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERI 437 (733)
Q Consensus 358 ~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~ 437 (733)
+.+
T Consensus 180 -----------------------------------------~~~------------------------------------ 182 (273)
T 1ouv_A 180 -----------------------------------------KDS------------------------------------ 182 (273)
T ss_dssp -----------------------------------------TCH------------------------------------
T ss_pred -----------------------------------------CCH------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHh
Q 004720 438 AMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEK 509 (733)
Q Consensus 438 ~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ 509 (733)
..+++.|..+.. .++|++|++||+.++...+ ...+.+++.+|.. .+++++|++++++|.+
T Consensus 183 ---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 183 ---PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp ---HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 012236777778 9999999999999987633 3568999999999 9999999999999999
Q ss_pred hCC
Q 004720 510 LEP 512 (733)
Q Consensus 510 ldp 512 (733)
++|
T Consensus 251 ~~~ 253 (273)
T 1ouv_A 251 LGA 253 (273)
T ss_dssp HTC
T ss_pred cCC
Confidence 988
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.9e-11 Score=126.74 Aligned_cols=294 Identities=14% Similarity=-0.004 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
..++..++..+...|+++.|+..++++....|... ....+.+++++|..+...|+ +++|..++++++++.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~- 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW--FYSRIVATSVLGEVLHCKGE---LTRSLALMQQTEQMARQHD- 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC--HHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHhcC-
Confidence 45667788899999999999999999998876432 23456678899999999999 9999999999999865431
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCc---HHHHHHHHHHhcCChHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHAS---LPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~---~~~lk~~il~~~g~~deAi~~ 335 (733)
+ ......++..++.+|...|++++|+.+++.+..... .....+|. .+...+.++...|++++|+..
T Consensus 88 ~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 88 V----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp C----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1 112345788899999999999999999988776432 11222233 335677888999999999988
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+...+...+ ...+..
T Consensus 158 ~~~al~~~~-----------------------------------------------------~~~~~~------------ 172 (373)
T 1hz4_A 158 ARSGIEVLS-----------------------------------------------------SYQPQQ------------ 172 (373)
T ss_dssp HHHHHHHTT-----------------------------------------------------TSCGGG------------
T ss_pred HHHHHHHhh-----------------------------------------------------ccCcHH------------
Confidence 775543100 000000
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
....+++.|..+...|+|++|..+|+.++.+.+.........+.....++.++...|
T Consensus 173 -----------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 173 -----------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp -----------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 011234578889999999999999999987644221100122223345667799999
Q ss_pred CHHHHHHHHHHHHhhCC-Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--h----HHHHHHHHHHHHcCCH
Q 004720 496 LIDRAQEYITEAEKLEP-NI----ASAFLKFKIYLQKNDQEGAINQILAMTICLDFT--T----DFLSLAAHEAVACQAL 564 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp-~~----~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~--~----~lL~la~~~a~~~~~~ 564 (733)
++++|.+.+.+++...| .. ........++...|++++|+..++......+.. + +.+...+......|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 99999999999988776 31 234567899999999999999999887654211 1 2444445556678888
Q ss_pred HHHHHHHHHHHhh
Q 004720 565 SVAVAALSNLLNF 577 (733)
Q Consensus 565 ~~a~~aL~~Ll~~ 577 (733)
+.|...+...+..
T Consensus 310 ~~A~~~l~~al~~ 322 (373)
T 1hz4_A 310 SDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776663
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=133.93 Aligned_cols=267 Identities=15% Similarity=0.036 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc-hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF-EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~-~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
...+...+.+++..|++++|+.+++++..+..... ......+.+++.+|..+...|+ +++|..+|++++++.++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK---YKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHh
Confidence 46677789999999999999999999999754311 1124467789999999999999 9999999999999865431
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCC---cHHHHHHHHHHhcCChHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHA---SLPVLAMKAWLGLGRYNEAEL 334 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p---~~~~lk~~il~~~g~~deAi~ 334 (733)
+.. .+....++..+|.+|...|++++|+.+++.+.+... ..++.+| ..++..+.++...|++++|+.
T Consensus 104 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 104 GKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp CTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCC---------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 111 123455899999999999999999999988876410 0002223 344778889999999999998
Q ss_pred HHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 004720 335 ELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV 414 (733)
Q Consensus 335 ~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l 414 (733)
.+...+.. .+ .. ..++++.
T Consensus 175 ~~~~a~~~--------------------------~~----------------------~~----~~~~~~~--------- 193 (311)
T 3nf1_A 175 YYQRALEI--------------------------YQ----------------------TK----LGPDDPN--------- 193 (311)
T ss_dssp HHHHHHHH--------------------------HH----------------------HT----SCTTCHH---------
T ss_pred HHHHHHHH--------------------------HH----------------------HH----hCCCCHH---------
Confidence 87755431 00 00 0111100
Q ss_pred HHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---------CchhhhhhHHHHH
Q 004720 415 AELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF---------DVENRILRAKSFR 485 (733)
Q Consensus 415 ~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~---------~~~~~~~~akl~r 485 (733)
....+.+.|..++..|+|++|+++|+.++...+. ... .......+.
T Consensus 194 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~ 248 (311)
T 3nf1_A 194 ------------------------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP-IWMHAEERE 248 (311)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC-HHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHHH
Confidence 0112335799999999999999999999975431 111 012344555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 486 VLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 486 ~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.++..+...+.+.+|...+.++...+| .+.+.+.+..++...|++++|+++++......
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 666666777788888889999988888 78888899999999999999999999887653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-12 Score=129.90 Aligned_cols=183 Identities=19% Similarity=0.069 Sum_probs=136.2
Q ss_pred HHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC-chhHHH
Q 004720 141 VWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL-FEHYKS 219 (733)
Q Consensus 141 ~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~-~~~~~~ 219 (733)
.+...|+++.|...|++|++......... .. .....+...+.++...|++++|+.++.++..+.... ......
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHD--HP----DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSS--SH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 35678999999999999999887543111 11 124566777999999999999999999999886331 112245
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.+.+++++|..+...|+ +++|+.+|++++++.++..+.. .+....++..+|.+|...|++++|+.+++
T Consensus 84 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKF---------HPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67789999999999999 9999999999999966531110 12345589999999999999999999998
Q ss_pred HHHccCC-CCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 300 VLREGSF-DGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 300 ~a~~~~~-~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
.+.+... ..++.+| ..++..+.++...|++++|+..+...+.
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8877410 0012234 3457888999999999999999876653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-12 Score=125.04 Aligned_cols=210 Identities=10% Similarity=0.026 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCC-CCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGD-HHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV 354 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~-~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~ 354 (733)
..+..+|.+|+..|+|++|+.+++.+.... + .++..++..+.++...|++++|+..+.+.+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------ 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------------ 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------------
Confidence 378888999999999999999999888853 3 56677788899999999999999887755431
Q ss_pred HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 355 EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 355 ~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
.|++..
T Consensus 72 ---------------------------------------------~p~~~~----------------------------- 77 (228)
T 4i17_A 72 ---------------------------------------------NYNLAN----------------------------- 77 (228)
T ss_dssp ---------------------------------------------TCSHHH-----------------------------
T ss_pred ---------------------------------------------CcchHH-----------------------------
Confidence 221211
Q ss_pred HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-
Q 004720 435 ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN- 513 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~- 513 (733)
.+.+.|..+++.|+|++|+++|+.++...|.+.......+.++.++|.+|..+|++++|++.|+++++++|+
T Consensus 78 -------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 150 (228)
T 4i17_A 78 -------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK 150 (228)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred -------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 122378899999999999999999999999775333456788999999999999999999999999999995
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHH
Q 004720 514 --IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVV 591 (733)
Q Consensus 514 --~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~ 591 (733)
+...+.+..++...|+ ..++.+.......+.... .......+..+.|+..++..++..+.+ ..+...
T Consensus 151 ~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~~----~~~~~~ 219 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPNR----TEIKQM 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCC----HHHHHH
Confidence 4566678888876554 334555555444443221 222334456788888888888844333 334444
Q ss_pred HH
Q 004720 592 LR 593 (733)
Q Consensus 592 lR 593 (733)
+.
T Consensus 220 l~ 221 (228)
T 4i17_A 220 QD 221 (228)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-11 Score=125.23 Aligned_cols=101 Identities=16% Similarity=-0.016 Sum_probs=82.8
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH-------
Q 004720 445 NCASILFRS-KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA------- 515 (733)
Q Consensus 445 ~~g~~~~k~-~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~------- 515 (733)
+.|..+... |+|++|+++|+.++.+.|.+.. +...+.++.++|.+|..+|+|++|+++|+++++++| +..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 368888886 9999999999999998874422 234578899999999999999999999999999988 433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
..+.+..++...|++++|+.+++......+.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456788999999999999999998876553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-12 Score=142.36 Aligned_cols=218 Identities=14% Similarity=0.018 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHh
Q 004720 150 LASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQ-NLAITLLNRAKCLLFGLFEHYKSLANQYLTFA 228 (733)
Q Consensus 150 ~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~-~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G 228 (733)
....-+++|+..++....... .. ..++..++.++...|++ ++|+.++++++.+.|..+. +++++|
T Consensus 79 ~~~~~~~~al~~l~~~~~~~~-~~------a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~-------a~~~lg 144 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSAQ-VE------AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE-------AWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CC------HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCc-hh------HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH-------HHHHHH
Confidence 344456666655553221111 11 35777889999999999 9999999999999988653 588999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc---------CcHHHHHHHHH
Q 004720 229 KSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK---------GEYESVIKCVR 299 (733)
Q Consensus 229 ~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~---------~~~ekAl~~l~ 299 (733)
..+...|+ +++|+.+|++++++ +|. ..++..+|.+|... |++++|+.+++
T Consensus 145 ~~~~~~g~---~~~A~~~~~~al~~---~p~---------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~ 203 (474)
T 4abn_A 145 EVYWKKGD---VTSAHTCFSGALTH---CKN---------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203 (474)
T ss_dssp HHHHHHTC---HHHHHHHHHHHHTT---CCC---------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHhh---CCC---------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH
Confidence 99999999 99999999999988 431 13788999999999 99999999999
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhc--------CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHH
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGL--------GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKG 371 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~--------g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~ 371 (733)
.+.+. .+.++..++..+.++... |++++|+..+...+..
T Consensus 204 ~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------------------- 250 (474)
T 4abn_A 204 LAVQM----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV----------------------------- 250 (474)
T ss_dssp HHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHh----CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----------------------------
Confidence 99986 466778888888888888 7788887776655431
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCC---cchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDG---VSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCAS 448 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp---~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~ 448 (733)
.| ++. ..+.+.|.
T Consensus 251 ----------------------------~p~~~~~~------------------------------------~~~~~lg~ 266 (474)
T 4abn_A 251 ----------------------------DRKASSNP------------------------------------DLHLNRAT 266 (474)
T ss_dssp ----------------------------CGGGGGCH------------------------------------HHHHHHHH
T ss_pred ----------------------------CCCcccCH------------------------------------HHHHHHHH
Confidence 11 111 12335899
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
.++..|+|++|+++|+.++...|.+ ...+.+++.++..+|++++|++.+.+
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~-------~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAW-------PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998755 35789999999999999999987753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=125.42 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=154.5
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+|+.|..++..|+ |++|+.+|+++++. .|.+. ....++..+|.+|...|+|++|+..++.+
T Consensus 16 ~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~---~p~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 16 QEAFERAMEFYNQGK---YDRAIEYFKAVFTY---GRTHE-----------WAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHGGG---CSCST-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHh---CCCCc-----------chHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 468999999999999 99999999999887 44321 23448889999999999999999999999
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHh--------cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHH
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLG--------LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVF 373 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~--------~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l 373 (733)
.+..++ ++..|.+++..+.++.. .|++++|+..+...+...|...... ....
T Consensus 79 l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----------------~a~~--- 138 (261)
T 3qky_A 79 IQIYQI-DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD----------------DATQ--- 138 (261)
T ss_dssp HHHCTT-CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH----------------HHHH---
T ss_pred HHHCCC-CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH----------------HHHH---
Confidence 886320 11224466899999999 8999999999988774333221110 0000
Q ss_pred HhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc
Q 004720 374 LGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS 453 (733)
Q Consensus 374 ~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~ 453 (733)
.+. .+.. .+....++.|..+++.
T Consensus 139 -------------------~~~-----------------~~~~---------------------~~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 139 -------------------KIR-----------------ELRA---------------------KLARKQYEAARLYERR 161 (261)
T ss_dssp -------------------HHH-----------------HHHH---------------------HHHHHHHHHHHHHHHT
T ss_pred -------------------HHH-----------------HHHH---------------------HHHHHHHHHHHHHHHc
Confidence 000 0000 0001245689999999
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhhCC-ChHH---HHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL----------SLIDRAQEYITEAEKLEP-NIAS---AFL 519 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l----------~~~~~A~e~~~~A~~ldp-~~~t---~~~ 519 (733)
|+|++|+..|+.++..+|.+. .....+.+++.||..+ |++++|++.++++++.+| ++.. ...
T Consensus 162 g~~~~A~~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDTP----WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTST----THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 999999999999999988652 4567899999999988 999999999999999999 6543 334
Q ss_pred HHHHHHhcCCHHH
Q 004720 520 KFKIYLQKNDQEG 532 (733)
Q Consensus 520 ~~ki~l~~gd~e~ 532 (733)
+..++...+++++
T Consensus 238 l~~~~~~~~~~~~ 250 (261)
T 3qky_A 238 YTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh
Confidence 4555555444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.7e-11 Score=124.37 Aligned_cols=230 Identities=11% Similarity=-0.014 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCH-------HHHHHHHHHHHH-HHhcCCCCcccchhhh
Q 004720 197 NLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSL-------NDALKLMNEALE-LCEKGLGEARTREETT 268 (733)
Q Consensus 197 ~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~-------e~A~~~l~~Ale-l~~~~~~~~~~~~~~~ 268 (733)
+.|+..|++++...|..+.....++..+...|..+...|+ + ++|...|++|++ + +|.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~A~~~~~rAl~~~---~p~~-------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD---MNNAKLFSDEAANIYERAISTL---LKKN-------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHHHHHTTT---TTTC--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccc---hhhcccchHHHHHHHHHHHHHh---Cccc--------
Confidence 6899999999999999887644444444444433334566 5 899999999998 5 3311
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc-HHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS-LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~-~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
..+|..++..+...|++++|..+++.+.+.+ +.+|. ++...+.++...|++++|+..+.+.+...+...
T Consensus 99 ------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 168 (308)
T 2ond_A 99 ------MLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 168 (308)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS----SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence 1278889999999999999999999999863 45665 677778888888888888887776654222111
Q ss_pred HHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004720 348 CIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF 427 (733)
Q Consensus 348 ~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~ 427 (733)
.+|+
T Consensus 169 ~~~~---------------------------------------------------------------------------- 172 (308)
T 2ond_A 169 HVYV---------------------------------------------------------------------------- 172 (308)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1110
Q ss_pred hcchhHHHhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 428 VGDAAAKERIAMHAVLWNCASILF-RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 428 ~g~~~~~~~~~~~~llW~~g~~~~-k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
..+...+ ..|++++|...|+.++...|.+ ..++.+++..+.++|++++|+.+|++
T Consensus 173 -----------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 173 -----------------TAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp -----------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0111212 3688888888888888876643 35678888888888888888888888
Q ss_pred HHhh---CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 507 AEKL---EPN--IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 507 A~~l---dp~--~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+++. +|+ ..............|+.++|...++++....+.+++.
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 8875 442 2233334556667788888888888888776554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-12 Score=148.12 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
-+.++.+||.+|.+.|++++|+.+++.+.++ .+.++.+++..+.++...|++++|+..+++.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----------- 72 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----------- 72 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------
Confidence 3458999999999999999999999999987 4678888899999999999999999998766531
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
.|++..
T Consensus 73 ----------------------------------------------~P~~~~---------------------------- 78 (723)
T 4gyw_A 73 ----------------------------------------------SPTFAD---------------------------- 78 (723)
T ss_dssp ----------------------------------------------CTTCHH----------------------------
T ss_pred ----------------------------------------------CCCCHH----------------------------
Confidence 222211
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..+.+.|+|++|++.|++++++.|.+ +..+.++|.+|..+|++++|+++|++|++++|
T Consensus 79 --------a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 79 --------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 12357999999999999999999999987744 56899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
++...+.+..++...|++++|+++++++....
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999887653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-11 Score=119.28 Aligned_cols=184 Identities=18% Similarity=0.140 Sum_probs=136.0
Q ss_pred HHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTE 269 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~ 269 (733)
...|+++.|+.++++|+.+... ........+.+++++|..+...|+ +++|+.+|++++++..+..+..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~-------- 80 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK---YKEAAHLLNDALAIREKTLGKD-------- 80 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTT--------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHcCCc--------
Confidence 4679999999999999998653 111224577889999999999999 9999999999999865431111
Q ss_pred hhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 270 LKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 270 ~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
.+....++..+|.+|...|++++|+.+++.+.... .
T Consensus 81 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~------------ 116 (283)
T 3edt_B 81 -HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-------------------------------E------------ 116 (283)
T ss_dssp -CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-------------------------------H------------
T ss_pred -chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------------------------------H------------
Confidence 22345588999999999999999998888775420 0
Q ss_pred HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhc
Q 004720 350 WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVG 429 (733)
Q Consensus 350 ~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g 429 (733)
+. ..++++.
T Consensus 117 -------------------------------------------~~----~~~~~~~------------------------ 125 (283)
T 3edt_B 117 -------------------------------------------KV----LGKFHPD------------------------ 125 (283)
T ss_dssp -------------------------------------------HH----HCTTCHH------------------------
T ss_pred -------------------------------------------HH----cCCCChH------------------------
Confidence 00 0000100
Q ss_pred chhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 430 DAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP--FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 430 ~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~--~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
....+.+.|..++..|+|++|+++|+.++.+.. .+.. .+..+.++.+++.+|...|++++|.++++++
T Consensus 126 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 126 ---------VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-DPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp ---------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001233578999999999999999999997631 1111 2577899999999999999999999999999
Q ss_pred Hhh
Q 004720 508 EKL 510 (733)
Q Consensus 508 ~~l 510 (733)
+++
T Consensus 196 l~~ 198 (283)
T 3edt_B 196 LTR 198 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-11 Score=126.48 Aligned_cols=217 Identities=13% Similarity=0.014 Sum_probs=156.8
Q ss_pred HHHccCHHHHHHHHHHHHhhhhc--C--chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 190 AWEVLEQNLAITLLNRAKCLLFG--L--FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 190 a~~~g~~~~A~~~~~rA~~l~~~--~--~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
++..|++++|..++.++....+. + ...+......|...|..+...|+ +++|+.+|.+++++..+.. +
T Consensus 1 ~~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~---~~~A~~~~~~al~~~~~~~-~----- 71 (307)
T 2ifu_A 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQ---LEQAKDAYLQEAEAHANNR-S----- 71 (307)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-C-----
T ss_pred CCccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcC-C-----
Confidence 35679999999999999987663 1 12345555666677899999999 9999999999999965431 1
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC----cHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA----SLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p----~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
....+.++..++.+|...|+|++|+.+++.+..+.. ...+| ..+...+.++.. |++++|+..+.+.+.
T Consensus 72 -----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 72 -----LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV--ENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 112456899999999999999999999998877531 11122 233455566666 888888777665432
Q ss_pred ccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHH
Q 004720 342 IKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDE 421 (733)
Q Consensus 342 ~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e 421 (733)
. + . . .+.+
T Consensus 144 ~--------------~------------~----------------------~----~~~~-------------------- 151 (307)
T 2ifu_A 144 V--------------F------------E----------------------N----EERL-------------------- 151 (307)
T ss_dssp H--------------H------------H----------------------H----TTCH--------------------
T ss_pred H--------------H------------H----------------------h----CCCh--------------------
Confidence 0 0 0 0 0000
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQ 501 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~ 501 (733)
......+.+.|..+.+.|+|++|+++|+.++.+.+.+.. +...+..+.+++.||+.+|++++|+
T Consensus 152 ---------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 152 ---------------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 000113345899999999999999999999988764432 2466778999999999999999999
Q ss_pred HHHHHHHhhCC
Q 004720 502 EYITEAEKLEP 512 (733)
Q Consensus 502 e~~~~A~~ldp 512 (733)
+++++++ ++|
T Consensus 216 ~~~~~al-~~p 225 (307)
T 2ifu_A 216 KCVRESY-SIP 225 (307)
T ss_dssp HHHHHHT-TST
T ss_pred HHHHHHh-CCC
Confidence 9999999 998
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-10 Score=115.33 Aligned_cols=206 Identities=9% Similarity=0.015 Sum_probs=136.3
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+|+.|..++..|+ +++|+..|+++++. .|.+. ....++..+|.+|...|+|++|+..++.+
T Consensus 5 ~~~~~~a~~~~~~g~---~~~A~~~~~~~~~~---~p~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 5 NEIYATAQQKLQDGN---WRQAITQLEALDNR---YPFGP-----------YSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTST-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCh-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999 99999999999997 44221 12347888999999999999999999998
Q ss_pred HccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhc
Q 004720 302 REGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLG 378 (733)
Q Consensus 302 ~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~ 378 (733)
.+.. +.+|. +++..+.++...|.. ++.. +......+...+.
T Consensus 68 l~~~----P~~~~~~~a~~~~g~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~---------------- 111 (225)
T 2yhc_A 68 IRLN----PTHPNIDYVMYMRGLTNMALDDS--ALQG--------------FFGVDRSDRDPQQ---------------- 111 (225)
T ss_dssp HHHC----TTCTTHHHHHHHHHHHHHHHHC------------------------------CCHH----------------
T ss_pred HHHC----cCCCcHHHHHHHHHHHHHhhhhh--hhhh--------------hhccchhhcCcHH----------------
Confidence 8753 45554 567888887764421 0000 0001111111111
Q ss_pred cCCchHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 379 RCHVSAKAAVRMAHRVAGDEGDGVSEAAVK--LRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 379 ~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~--~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
...|+..+++++ +..|+++.... .+...+.. .+....+..|..+++.|+|
T Consensus 112 -----~~~A~~~~~~~l--~~~P~~~~a~~a~~~l~~~~~---------------------~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 112 -----ARAAFSDFSKLV--RGYPNSQYTTDATKRLVFLKD---------------------RLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp -----HHHHHHHHHHHH--TTCTTCTTHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTCH
T ss_pred -----HHHHHHHHHHHH--HHCcCChhHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCcH
Confidence 123333333444 34444433220 11000000 0000123479999999999
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
++|+..|+.++..+|.+ +...+.+.+++.||.++|++++|++.++++....|
T Consensus 164 ~~A~~~~~~~l~~~p~~----~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDT----QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHSTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHCcCC----CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 99999999999999976 34568899999999999999999999999988877
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-11 Score=111.32 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|+.+|+.|+|++|+++|+.++.+.|.+ +.++.++|.||.++|++++|++.|++|++++| ++...+.+..+
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 58999999999999999999999998754 46899999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+...|++++|++++++..+..+.+++.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999998777764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=129.98 Aligned_cols=353 Identities=11% Similarity=0.027 Sum_probs=181.2
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhhhc
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQ---NLAITLLNRAKCLLFG 212 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~---~~A~~~~~rA~~l~~~ 212 (733)
...|...++.|+++.|...|+++++.-. ++ .+...+..+...|+. ++|+..|.++.+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~--------~~--------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY--------SE--------AQVGLADIQVGTRDPAQIKQAEATYRAAADT--- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CT--------GGGTCC----------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC--------HH--------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---
Confidence 3467788888999999999999976421 01 011113344556777 8999999999966
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCC--CHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETN--SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~--~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
.+. .++++|..+...+.+. .+++|+.||++|.+. +. .. .+..|+.+|...+.
T Consensus 68 ~~~-------A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~---g~--~~--------------A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 68 SPR-------AQARLGRLLAAKPGATEAEHHEAESLLKKAFAN---GE--GN--------------TLIPLAMLYLQYPH 121 (452)
T ss_dssp ----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT---TC--SS--------------CHHHHHHHHHHCGG
T ss_pred CHH-------HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC---CC--HH--------------HHHHHHHHHHhCCC
Confidence 333 3777787666665210 189999999999884 22 10 45567777766554
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh-h-ccCCchHHHHhHHHHHHHhc---h-hh
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV-E-IKGIPECIWVSAVEAYFQAA---G-TA 364 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l-~-~~~~~~~~~ls~~~ly~~~~---~-~~ 364 (733)
.+++..+++.+.... ...+|...+..+.++...+.+++++..+.... . ....+. .+..++.+|...+ . +.
T Consensus 122 ~~~~~~a~~~~~~a~---~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~-a~~~Lg~~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 122 SFPNVNAQQQISQWQ---AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI-CYVELATVYQKKQQPEQQAE 197 (452)
T ss_dssp GCTTCCHHHHHHHHH---HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT-HHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHH---HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCcccHHH
Confidence 333333332222211 12356677777777777776665555533222 1 111222 4445666666554 2 44
Q ss_pred hHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 365 GAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 365 a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
|++.+++... ..++.......+..-+....+.+.+ ..++... ...... .......
T Consensus 198 A~~~~~~aa~----~g~~~a~~~~~Lg~~y~~g~~~~~d----~~~A~~~--------~~~aa~---------g~~~a~~ 252 (452)
T 3e4b_A 198 LLKQMEAGVS----RGTVTAQRVDSVARVLGDATLGTPD----EKTAQAL--------LEKIAP---------GYPASWV 252 (452)
T ss_dssp HHHHHHHHHH----TTCSCHHHHHHHHHHHTCGGGSSCC----HHHHHHH--------HHHHGG---------GSTHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCCC----HHHHHHH--------HHHHcC---------CCHHHHH
Confidence 5555554321 1111111101111111100111111 1111110 000000 1111233
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhhCC-ChH
Q 004720 445 NCASI-L--FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-----LIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 445 ~~g~~-~--~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-----~~~~A~e~~~~A~~ldp-~~~ 515 (733)
+.|.. + ...+++++|++||+++... ..+..+++++.+|. .| ++++|.+.|++|. | ++.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~ 319 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA---------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA 319 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence 46766 3 4689999999999998753 33567899999998 44 9999999999987 7 899
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 004720 516 SAFLKFKIYLQ----KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVA---CQALSVAVAALSNLLN 576 (733)
Q Consensus 516 t~~~~~ki~l~----~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~---~~~~~~a~~aL~~Ll~ 576 (733)
.++.+..+|.. ..|.++|++.+++.....+ ..-...++...... ..+...|..-++.-.+
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99999988887 4599999999998877533 22344454433322 2255555544444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.9e-11 Score=120.17 Aligned_cols=136 Identities=9% Similarity=-0.005 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|++++|+..+++++...|..+. ...+++.+|.+++..|+ +++|+.+|++++++ .|.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~---~p~~ 85 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW----AADAQFYLARAYYQNKE---YLLAASEYERFIQI---YQID 85 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT----HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc----hHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHH---CCCC
Confidence 56667788999999999999999999999887642 24579999999999999 99999999999998 4432
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhc--------cCcHHHHHHHHHHHHccCCCCCCCCCcHH----------------
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQ--------KGEYESVIKCVRVLREGSFDGGDHHASLP---------------- 316 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~--------~~~~ekAl~~l~~a~~~~~~~~~~~p~~~---------------- 316 (733)
. ....++..+|.+|.. .|++++|+..++.+... .+.++...
T Consensus 86 ~-----------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~~~~~~~~~~ 150 (261)
T 3qky_A 86 P-----------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----YPNHELVDDATQKIRELRAKLARK 150 (261)
T ss_dssp T-----------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred c-----------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----CcCchhHHHHHHHHHHHHHHHHHH
Confidence 2 123478889999999 99999999999998885 34555555
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 317 -VLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 317 -~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+..+.++...|++++|+..+...+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777777777777777766553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=144.03 Aligned_cols=165 Identities=10% Similarity=0.068 Sum_probs=143.5
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+.-....|+.+.+.|++++|+.+|++|+++.+. . ...+...+.++..+|++++|+..|++|+++.|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--------~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P 74 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------F------AAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345667899999999999999999999987542 1 24566778899999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..+. +++++|..+...|+ +++|+..|++|+++ +|.+ ..++.+||.+|...|++
T Consensus 75 ~~~~-------a~~nLg~~l~~~g~---~~~A~~~~~kAl~l---~P~~--------------~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 75 TFAD-------AYSNMGNTLKEMQD---VQGALQCYTRAIQI---NPAF--------------ADAHSNLASIHKDSGNI 127 (723)
T ss_dssp TCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCH
T ss_pred CCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCC--------------HHHHHHHHHHHHHcCCH
Confidence 8664 58999999999999 99999999999999 5532 23789999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
++|+.+++.+.++ ++.++.+++..+.++...|++++|++.+.+.+.
T Consensus 128 ~eAi~~~~~Al~l----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKL----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999987 567888999999999999999999999877653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=110.17 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls 352 (733)
.+...+..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 72 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------- 72 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------
Confidence 34568888999999999999999999888775 34567777888999999999999988877554311
Q ss_pred HHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchh
Q 004720 353 AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAA 432 (733)
Q Consensus 353 ~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~ 432 (733)
|++..
T Consensus 73 ------------------------------------------------~~~~~--------------------------- 77 (186)
T 3as5_A 73 ------------------------------------------------PDNVK--------------------------- 77 (186)
T ss_dssp ------------------------------------------------TTCHH---------------------------
T ss_pred ------------------------------------------------CCCHH---------------------------
Confidence 11100
Q ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 433 AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 433 ~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+.+.|..++..|+|++|+++|+.++...|.+ ..++..++.+|...|++++|.++++++++.+|
T Consensus 78 ---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 78 ---------VATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp ---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 11236777888899999999999998876643 35788899999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
++...+.+..++...|++++|++.++.+....+
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 888888899999999999999999988876643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-10 Score=123.38 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=74.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
.|..+...|++++|+..|.++.+. ..+. .++++|..++..|+...+++|+.||++|.+. .+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~-------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~------- 69 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSE-------AQVGLADIQVGTRDPAQIKQAEATYRAAADT---SP------- 69 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCT-------GGGTCC-------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHH-------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CH-------
Confidence 377888999999999999999754 4443 3677777777777711139999999999976 21
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHH---HHHHH
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKG-----EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEA---ELELR 337 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~-----~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deA---i~~l~ 337 (733)
..+..|+.++...+ ++++|+.+++.+.. ..+|.+.+..+.++...+..+++ ...+.
T Consensus 70 ----------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~------~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~ 133 (452)
T 3e4b_A 70 ----------RAQARLGRLLAAKPGATEAEHHEAESLLKKAFA------NGEGNTLIPLAMLYLQYPHSFPNVNAQQQIS 133 (452)
T ss_dssp -----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH------TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHH
T ss_pred ----------HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 14667888665554 78999999998886 34677888888888888765444 33333
Q ss_pred HhhhccCCchHHHHhHHHHHHHhch
Q 004720 338 GMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 338 ~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
.... .+.+ .....++.+|...+.
T Consensus 134 ~a~~-~g~~-~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 134 QWQA-AGYP-EAGLAQVLLYRTQGT 156 (452)
T ss_dssp HHHH-HTCT-THHHHHHHHHHHHTC
T ss_pred HHHH-CCCH-HHHHHHHHHHHcCCC
Confidence 2221 1222 233455666665543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.2e-09 Score=127.07 Aligned_cols=347 Identities=13% Similarity=0.044 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHHHHhHHHhhcccccccccCCCCCChhhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhcc
Q 004720 66 NSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDL 145 (733)
Q Consensus 66 ~~~~~~l~~~a~~LWN~~v~~~~~~~~~~~~~~~~~~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~ 145 (733)
.--|--+.+.-..||+.+..-.| +-+ |++--....++.+..-.|+.+- -+.+.|...
T Consensus 942 ~~arylv~r~d~~lW~~vl~~~n-------------~~R---R~Lidqv~a~aL~e~~~PeeVs-------~~vKaf~~a 998 (1630)
T 1xi4_A 942 SLSRYLVRRKDPELWGSVLLESN-------------PYR---RPLIDQVVQTALSETQDPEEVS-------VTVKAFMTA 998 (1630)
T ss_pred HHHHHHHHhcCHHHHHHHhcCCc-------------HHH---HHHHHHHHHhhcccccCHHHhH-------HHHHHHHhC
Confidence 33455567777889999887744 111 2222223333333333333332 234455588
Q ss_pred CCcchHHHHHHHHHHHHHH----------Hh--hc-cCCChHHHHH----HHH-HHHH-HHHHHHHccCHHHHHHHHHHH
Q 004720 146 KKYDLASGCFEKATEIVSK----------LD--IS-RISDSDERKL----LLD-INIA-RSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 146 g~~~~A~~~lekA~e~~~~----------~~--~~-~~~~~~e~~~----~l~-~l~~-rA~~a~~~g~~~~A~~~~~rA 206 (733)
|++..|+..|||++- .+. +. +. +. +-.+.+ .++ ++.. -|..+...|.+++|..+|+|+
T Consensus 999 glp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 999 DLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 999999999999992 111 00 00 10 000010 001 1111 166777788888888888886
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
... .....+++. ..++ +++|+.+++++ . ...+|..+|.++.
T Consensus 1076 ~~~--------~~A~~VLie------~i~n---ldrAiE~Aerv-------n---------------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1076 DVN--------TSAVQVLIE------HIGN---LDRAYEFAERC-------N---------------EPAVWSQLAKAQL 1116 (1630)
T ss_pred CCH--------HHHHHHHHH------HHhh---HHHHHHHHHhc-------C---------------CHHHHHHHHHHHH
Confidence 311 111122321 2333 44444433322 1 0138889999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc-hHHHHhHHHHHHHhchhhh
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP-ECIWVSAVEAYFQAAGTAG 365 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~-~~~~ls~~~ly~~~~~~~a 365 (733)
..|++++|+.+|..+ .+|+.++-.+.++.+.|++++|++.+.+.....+.+ .+. ..+..|.+.++
T Consensus 1117 ~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~r--- 1182 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNR--- 1182 (1630)
T ss_pred hCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcC---
Confidence 999999999998665 468888899999999999999999998765332211 111 12222221111
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH
Q 004720 366 AETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWN 445 (733)
Q Consensus 366 ~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~ 445 (733)
++ .+..|+ + ++ ...-+++
T Consensus 1183 le----------------------ele~fI--~-~~-------------------------------------n~ad~~~ 1200 (1630)
T 1xi4_A 1183 LA----------------------ELEEFI--N-GP-------------------------------------NNAHIQQ 1200 (1630)
T ss_pred HH----------------------HHHHHH--h-CC-------------------------------------CHHHHHH
Confidence 00 011221 0 11 0112335
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYL 525 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l 525 (733)
.|..+++.|+|++|+.+|..+ .-+.+++.||.++|++++|++.+.+|.. +.+..-.-.+.+
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA~n----~~aWkev~~acv 1261 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKANS----TRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----HHHHHHHHHHHh
Confidence 899999999999999999986 1368899999999999999999998833 344444455555
Q ss_pred hcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 526 QKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
..|++..|..|...+.. +|+.+.-.+......|..+.++..|+.-++
T Consensus 1262 e~~Ef~LA~~cgl~Iiv----~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred hhhHHHHHHHHHHhhhc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 66666666666543222 455555555555666666666665555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-08 Score=112.92 Aligned_cols=372 Identities=11% Similarity=0.005 Sum_probs=219.6
Q ss_pred HHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTEL 270 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~ 270 (733)
...|+++.|...|++++...|..+. +++..|......|+ +++|...|++++.. .| +.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~-------~w~~~~~~~~~~~~---~~~a~~~~~ral~~---~p-~~--------- 79 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGR-------FWKLYIEAEIKAKN---YDKVEKLFQRCLMK---VL-HI--------- 79 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHTTT---CC-CH---------
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHhcCC---HHHHHHHHHHHHhc---CC-Ch---------
Confidence 5689999999999999999998764 46677787888899 99999999999987 33 11
Q ss_pred hhcHHHHHHHHHHH-HhccCcHHHHHH----HHHHHHccCCCCCCCCCcHHHHHHHHHHh---------cCChHHHHHHH
Q 004720 271 KGLKFKTLRFISAI-HLQKGEYESVIK----CVRVLREGSFDGGDHHASLPVLAMKAWLG---------LGRYNEAELEL 336 (733)
Q Consensus 271 ~el~~~~l~~La~~-yl~~~~~ekAl~----~l~~a~~~~~~~~~~~p~~~~lk~~il~~---------~g~~deAi~~l 336 (733)
..|...+.. +-..|++++|.+ .++.+....+ ....++..+...++.... .|++++|...+
T Consensus 80 -----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 80 -----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG-MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp -----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 145545532 223456655544 6666655320 011122333333444433 57889999999
Q ss_pred HHhhhccCCc-hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHH------hhcCC----CCCcc--
Q 004720 337 RGMVEIKGIP-ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHR------VAGDE----GDGVS-- 403 (733)
Q Consensus 337 ~~~l~~~~~~-~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~------~l~~~----~sp~~-- 403 (733)
.+.+..+... ..+|.....+....+.. ..+.++.. ..+....+..+... .+. . ..|+.
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~----~~~~~l~~----~~~~~~~A~~~~~~~~~~~~~l~-~~~~~~~p~~~~ 224 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIH----LAKKMIED----RSRDYMNARRVAKEYETVMKGLD-RNAPSVPPQNTP 224 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHH----HHHHHHHT----THHHHHHHHHHHHHHHHHHHHCC-SSSCCCCCC--C
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchh----HHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhc-cccccCCCCCCh
Confidence 9988754322 33443333322111110 00111100 00011112111111 110 0 12211
Q ss_pred -----hHHHHHHHHHHHHhh---------hHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHh-------cCCHH----
Q 004720 404 -----EAAVKLRAKAVAELV---------SDERVLALFVGDAAAKERIAMHAVLWN-CASILFR-------SKDYE---- 457 (733)
Q Consensus 404 -----~~~l~~ka~~l~~l~---------~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k-------~~~y~---- 457 (733)
...| .+.....+.. ..+++..++. +.. ...+.+.-+|. .|..+.+ .|+++
T Consensus 225 ~~~~~~~~w-~~~~~~e~~~~~~~~~~~~~~~~a~~~y~--~al-~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 225 QEAQQVDMW-KKYIQWEKSNPLRTEDQTLITKRVMFAYE--QCL-LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp CHHHHHHHH-HHHHHHHHHCSSCCSCSHHHHHHHHHHHH--HHH-HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHcCCccCCcchhHHHHHHHHHH--HHH-HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 0111 1111111000 0011212221 011 11222334555 5655554 79987
Q ss_pred ---HHHHHHHHhhc-cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHhcCCHH
Q 004720 458 ---ASAEMFEKSML-YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI-ASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 458 ---~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~-~t~~~~~ki~l~~gd~e 531 (733)
+|++.|+.++. +.|.+ ..++.+++..+.+.|++++|.++|+++++++| ++ ........+..+.|+.+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 99999999997 66643 46889999999999999999999999999999 65 45556677777899999
Q ss_pred HHHHHHHHHHhccCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHH
Q 004720 532 GAINQILAMTICLDFTTDFL-SLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVL 610 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL-~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l 610 (733)
+|++.+++.....+..+.+. ..+..+....|+.+.|+..++..++..+.+ + .+...++.+.. ..|+.+++.
T Consensus 374 ~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~---~----~~~~~~~~~~~-~~g~~~~Ar 445 (530)
T 2ooe_A 374 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---P----EYVLAYIDYLS-HLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC---H----HHHHHHHHHHT-TTTCHHHHH
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC---H----HHHHHHHHHHH-hCCCHhhHH
Confidence 99999999998876555533 333333345899999999999999865433 2 22223333332 247888899
Q ss_pred HHHHHHHHH
Q 004720 611 KYMKRAHAR 619 (733)
Q Consensus 611 ~~~~~A~~~ 619 (733)
..|++|...
T Consensus 446 ~~~~~al~~ 454 (530)
T 2ooe_A 446 VLFERVLTS 454 (530)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=136.99 Aligned_cols=196 Identities=10% Similarity=-0.085 Sum_probs=148.6
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHH-----hcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC
Q 004720 232 LSKNETNSLNDALKLMNEALELC-----EKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF 306 (733)
Q Consensus 232 ~~~~~~~~~e~A~~~l~~Alel~-----~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~ 306 (733)
+..++ +++|+..|+++++.. +.++.+ ...+..+|.+|+..|+|++|+..++.+.+.
T Consensus 402 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~p~~--------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-- 462 (681)
T 2pzi_A 402 TVLSQ---PVQTLDSLRAARHGALDADGVDFSES--------------VELPLMEVRALLDLGDVAKATRKLDDLAER-- 462 (681)
T ss_dssp TTTCC---HHHHHHHHHHHHTC-------CCTTC--------------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred ccccC---HHHHHHHHHHhhhhcccccccccccc--------------hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 67888 999999999998210 012211 127888999999999999999999999886
Q ss_pred CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHH
Q 004720 307 DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKA 386 (733)
Q Consensus 307 ~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~ 386 (733)
++.++..++..+.++...|++++|+..+.+.+..
T Consensus 463 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------------------------------------------- 496 (681)
T 2pzi_A 463 --VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-------------------------------------------- 496 (681)
T ss_dssp --HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred --CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Confidence 4577888899999999999999999998866532
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004720 387 AVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKS 466 (733)
Q Consensus 387 a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~a 466 (733)
.|++.. .+.+.|..+++.|+|++ +++|+.+
T Consensus 497 -------------~P~~~~------------------------------------~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 497 -------------FPGELA------------------------------------PKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp -------------STTCSH------------------------------------HHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred -------------CCCChH------------------------------------HHHHHHHHHHHcCChHH-HHHHHHH
Confidence 121211 12247888999999999 9999999
Q ss_pred hccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCC-----HHHHHHHHHHH
Q 004720 467 MLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND-----QEGAINQILAM 540 (733)
Q Consensus 467 L~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd-----~e~Al~~l~~~ 540 (733)
+...|.+ ..+++++|.+|..+|++++|+++|++|++++| +...++.+..+++..++ .+...+++..+
T Consensus 527 l~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 527 WSTNDGV-------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp HHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred HHhCCch-------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 9988754 45789999999999999999999999999999 78888888888877655 23333344444
Q ss_pred HhccCCChH
Q 004720 541 TICLDFTTD 549 (733)
Q Consensus 541 ~~~~~~~~~ 549 (733)
.......++
T Consensus 600 ~~~~~~~~~ 608 (681)
T 2pzi_A 600 EALPPTEPR 608 (681)
T ss_dssp HTSCTTSTT
T ss_pred hhCCCCcHH
Confidence 455444555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-10 Score=108.13 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC--------CCCch---hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYL--------PFDVE---NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~--------~~~~~---~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.+.+.|+.+|+.|+|++|+++|+.++.+. |.++. ..+..+.++.++|.||.++|+|++|+++|++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34569999999999999999999999872 33220 01577899999999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
+| ++...+.+..++...|++++|+.++++.....+.++
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99 899999999999999999999999999999866555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=114.03 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=132.7
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH---Hhhc-cCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK---LDIS-RISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~---~~~~-~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
+...+..|..+++.|+++.|..+|++|++..|. .+.. ..... ......+....+.++...|++++|+..+++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN--SEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch--hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999988663 1111 10001 11112333447889999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
.+.|..+. +++++|..+...|+ +++|+.+|++++++ +|.+. .++.++|.+|..
T Consensus 82 ~~~p~~~~-------~~~~lg~~~~~~g~---~~~A~~~~~~al~~---~P~~~--------------~a~~~lg~~~~~ 134 (208)
T 3urz_A 82 QKAPNNVD-------CLEACAEMQVCRGQ---EKDALRMYEKILQL---EADNL--------------AANIFLGNYYYL 134 (208)
T ss_dssp HHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHH
T ss_pred HHCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHc---CCCCH--------------HHHHHHHHHHHH
Confidence 99998764 58889999999999 99999999999999 65332 278899999977
Q ss_pred cCc--HHHHHHHHHHHHccCCCCCCCCC--cHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 288 KGE--YESVIKCVRVLREGSFDGGDHHA--SLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 288 ~~~--~ekAl~~l~~a~~~~~~~~~~~p--~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
.+. .+++...++.+.. ..| ...+..+.++...|++++|+..+.+.+...|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS-------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---C-------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 764 4456666666543 123 24578888999999999999999999855443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-11 Score=112.18 Aligned_cols=146 Identities=10% Similarity=-0.048 Sum_probs=111.2
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
.|..+...|+++.|+..|++|+...+... ......|.++...|++++|+.++++++.+.|..+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--------------~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~-- 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS--------------IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK-- 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH--------------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Confidence 46667777788888888888776554211 12234478889999999999999999999988764
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
+++++|.++...|+ +++|+.+|++++++ +|.+. .++..+|.+|...|++++|.++
T Consensus 67 -----a~~~lg~~~~~~~~---~~~A~~~~~~al~~---~p~~~--------------~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 67 -----AHRFLGLLYELEEN---TDKAVECYRRSVEL---NPTQK--------------DLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp -----HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHHHCSSSSHHHH
T ss_pred -----HHHHHHHHHHHcCc---hHHHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHcCChHHHHHH
Confidence 58888999999999 99999999999998 55332 2788899999999988776654
Q ss_pred -HHHHHccCCCCCCCCCcHHHHHHHHHHhcCC
Q 004720 298 -VRVLREGSFDGGDHHASLPVLAMKAWLGLGR 328 (733)
Q Consensus 298 -l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~ 328 (733)
++.+.++ .+.+|.++.++.+++...|+
T Consensus 122 ~~~~al~l----~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 122 WVERAAKL----FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHH----STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHh----CcCCHHHHHHHHHHHHHhCc
Confidence 6888876 46788888889888887775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=114.02 Aligned_cols=190 Identities=12% Similarity=-0.006 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|++++|+..+.++++..+..+. .......++.+|..+...|+ +++|+.+|++|+++..+.. +
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~~~-~ 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLTGI-D 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHTTCCCSS-C
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhcCC-c
Confidence 34455677888999999999999999988765443 33455667789999999999 9999999999998743321 0
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
....+.++..+|.+|...|+|++|+.+++.+.++. ...
T Consensus 151 ----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~----~~~---------------------------- 188 (293)
T 2qfc_A 151 ----------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL----EAL---------------------------- 188 (293)
T ss_dssp ----------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHS----------------------------
T ss_pred ----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----Hhc----------------------------
Confidence 11245589999999999999999999988876421 000
Q ss_pred hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhH
Q 004720 341 EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSD 420 (733)
Q Consensus 341 ~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~ 420 (733)
|+++.
T Consensus 189 ------------------------------------------------------------~~~~~--------------- 193 (293)
T 2qfc_A 189 ------------------------------------------------------------HDNEE--------------- 193 (293)
T ss_dssp ------------------------------------------------------------CCCHH---------------
T ss_pred ------------------------------------------------------------Ccccc---------------
Confidence 00000
Q ss_pred HHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 421 ERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 421 e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
....+++|.|..+++.|+|++|+++|++++.+.+.... ....+.++.++|.||.++|++++|
T Consensus 194 -----------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 194 -----------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp -----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred -----------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHcCCcHHH
Confidence 00013456899999999999999999999987542211 245689999999999999999999
Q ss_pred -HHHHHHHHhh
Q 004720 501 -QEYITEAEKL 510 (733)
Q Consensus 501 -~e~~~~A~~l 510 (733)
.+++++|+.+
T Consensus 256 i~~~~~~Al~~ 266 (293)
T 2qfc_A 256 IEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8889999876
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-10 Score=104.06 Aligned_cols=100 Identities=10% Similarity=0.154 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch-------HH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI-------AS 516 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~-------~t 516 (733)
+.|+.+|+.|+|++|+++|+.++++.|.+ +.++.++|.||..+|++++|++++++|++++| +. .+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 58999999999999999999999998754 46899999999999999999999999999988 43 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
.+.+..++...|++++|++++++.....+ +|+.+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 56688889999999999999999887654 577543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-10 Score=112.64 Aligned_cols=188 Identities=10% Similarity=-0.020 Sum_probs=137.9
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+|+.|+..|+++++..|. ++. ..+.+...+.++...|++++|+..++++....|.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPF------GPY-----SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------STT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 44567899999999999999999999986442 011 0245666788999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHhHHHHh------------------cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh---hhhhh
Q 004720 213 LFEHYKSLANQYLTFAKSALS------------------KNETNSLNDALKLMNEALELCEKGLGEARTREE---TTELK 271 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~------------------~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~---~~~~~ 271 (733)
.+. ...+++.+|.++.. .|+ +++|+..|+++++. .|.+...... .....
T Consensus 74 ~~~----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 74 HPN----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp CTT----HHHHHHHHHHHHHHHHC--------------CCHH---HHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHH
T ss_pred CCc----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHH---HHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHH
Confidence 764 22346666666654 567 99999999999887 4433321110 00111
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
.........+|.+|...|+|++|+..++.+.+.. +.+| .+.+..+.++.+.|++++|+..+..+..+.+.
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 1122334578999999999999999999988853 3444 45799999999999999999999877755543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=112.48 Aligned_cols=188 Identities=12% Similarity=-0.027 Sum_probs=140.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
+...+..+...|++++|+..+++++...+..+.. ......++.+|..+...++ +++|+.+|++|+++.... ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---~~~Ai~~~~~al~~~~~~---~~ 150 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-QQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLTG---ID 150 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH-HHHHHHHHHHHHHHTTSSC---HHHHHHHHHHHHHTCCCC---SC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH-HHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHhccc---cc
Confidence 3344667889999999999999999876655543 3345556678999998899 999999999999963221 11
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
......++.++|.+|...|+|++|+.+++.+.+.. . .
T Consensus 151 --------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------------------------~---~- 187 (293)
T 3u3w_A 151 --------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-------------------------------E---A- 187 (293)
T ss_dssp --------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------H---H-
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------H---h-
Confidence 11234589999999999999999999988876421 0 0
Q ss_pred cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 343 KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 343 ~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
. .. +.
T Consensus 188 ---------------------------------------------------~---~~---~~------------------ 192 (293)
T 3u3w_A 188 ---------------------------------------------------L---HD---NE------------------ 192 (293)
T ss_dssp ---------------------------------------------------S---SC---CH------------------
T ss_pred ---------------------------------------------------c---cc---ch------------------
Confidence 0 00 00
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHH
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQ 501 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~ 501 (733)
.....++.|.|..+++.|+|++|+++|+.++.+.+.... ....+.++.++|.||.++| .+++|+
T Consensus 193 --------------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~~A~ 257 (293)
T 3u3w_A 193 --------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALIGQLYYQRGECLRKLEYEEAEIE 257 (293)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred --------------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 000123457899999999999999999999987653322 2467899999999999999 579999
Q ss_pred HHHHHHHhh
Q 004720 502 EYITEAEKL 510 (733)
Q Consensus 502 e~~~~A~~l 510 (733)
+++++|+.+
T Consensus 258 ~~~~~Al~i 266 (293)
T 3u3w_A 258 DAYKKASFF 266 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-09 Score=114.24 Aligned_cols=189 Identities=12% Similarity=0.038 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
+....+..+.+.|+.+...|+++.|..+|++|+++.+... . .......+...+.++..+|++++|+.++++|
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR-----S---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3455667778889999999999999999999999875421 1 1112345666688888999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
+.+.+.... ....+..+.++|..+.. |+ +++|+.+|++|+++.+... + ......++.++|.+|.
T Consensus 103 l~l~~~~g~-~~~~a~~~~~lg~~~~~-g~---~~~A~~~~~~Al~~~~~~~-~----------~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 103 SVMYVENGT-PDTAAMALDRAGKLMEP-LD---LSKAVHLYQQAAAVFENEE-R----------LRQAAELIGKASRLLV 166 (307)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHTT-TC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHHc-CC---HHHHHHHHHHHHHHHHhCC-C----------hhHHHHHHHHHHHHHH
Confidence 999765332 23567889999999988 99 9999999999999965421 0 1234568999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
..|+|++|+.+++.+..+.+. ....+ ..++..+.+++..|++++|+..+.+.+
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKE-MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999988875310 01111 133566678888899999999998877
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-10 Score=109.76 Aligned_cols=120 Identities=11% Similarity=0.118 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH---------HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHH
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS---------LANQYLTFAKSALSKNETNSLNDALKLMNEAL 251 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~---------La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Al 251 (733)
+.+..++..++..|++++|+.++++++.+.|..+..... ...+.+++|..+...|+ +++|+.+|++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN---YDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 456778889999999999999999999999875542110 01111226666666666 666666666666
Q ss_pred HHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q 004720 252 ELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL 324 (733)
Q Consensus 252 el~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~ 324 (733)
++ +|.+. .++..+|.+|...|++++|+.+++.+.+. ++.++.+++..+.++.
T Consensus 82 ~~---~p~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 82 QK---APNNV--------------DCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGNYYY 133 (208)
T ss_dssp HH---CTTCH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred HH---CCCCH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence 66 33221 25556666666666666666666666554 2344444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-10 Score=106.63 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
++.|..+++.|+|++|+++|+.++.+.|.+ +.++.++|.||..+|++++|+++|+++++++| ++...+.+..
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQERD-------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 458999999999999999999999998754 46799999999999999999999999999999 8999999999
Q ss_pred HHHhcCCHHHHHHH-HHHHHhccCCChHHHHHHHHHHHHcC
Q 004720 523 IYLQKNDQEGAINQ-ILAMTICLDFTTDFLSLAAHEAVACQ 562 (733)
Q Consensus 523 i~l~~gd~e~Al~~-l~~~~~~~~~~~~lL~la~~~a~~~~ 562 (733)
++...|++++|++. +++..+..+.+|.+..+-.++....|
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99999999888876 58888888888988777766665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.1e-10 Score=99.75 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|+++|+.++...|.+ ..++.++|.||.++|++++|+++++++++++| ++...+.+.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4468999999999999999999999988754 46899999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcc
Q 004720 522 KIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.++...|++++|++++++.....
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999886
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=109.32 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-------CchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPF-------DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--- 510 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~-------~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--- 510 (733)
..+.+.|+.+++.|+|++|+++|++++.+.|. +.. +..+.++.|++.|+.++|+|++|++.|++|+++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~--~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHA--GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34557999999999999999999999999987 321 356679999999999999999999999999999
Q ss_pred ----CC-ChHHH----HHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 511 ----EP-NIASA----FLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 511 ----dp-~~~t~----~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
+| +.... |.+..++...|++++|+++|++...+.+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99 78888 9999999999999999999999998864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-08 Score=107.79 Aligned_cols=219 Identities=7% Similarity=-0.067 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh-------cCCh-------HHHHHHHHHhhh-ccCCchHHHHhHHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG-------LGRY-------NEAELELRGMVE-IKGIPECIWVSAVEA 356 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~-------~g~~-------deAi~~l~~~l~-~~~~~~~~~ls~~~l 356 (733)
++|+..++.+... .+.+|..++..+..+.. .|++ ++|+..+.+.+. ..|....+|...+.+
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6788888888876 36788888888888763 5886 899999999987 467777788888887
Q ss_pred HHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 357 YFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEA-AVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 357 y~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~-~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
+...+. +.|...+ ++.+ +..|++.. .|
T Consensus 109 ~~~~~~~~~A~~~~----------------------~~al--~~~p~~~~~~~--------------------------- 137 (308)
T 2ond_A 109 EESRMKYEKVHSIY----------------------NRLL--AIEDIDPTLVY--------------------------- 137 (308)
T ss_dssp HHHTTCHHHHHHHH----------------------HHHH--TSSSSCTHHHH---------------------------
T ss_pred HHhcCCHHHHHHHH----------------------HHHH--hccccCccHHH---------------------------
Confidence 765554 3333333 3444 34554422 11
Q ss_pred HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCC-
Q 004720 435 ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCY-LGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cy-l~l~~~~~A~e~~~~A~~ldp- 512 (733)
-+.|..+...|++++|...|+.++...|.. ..++...+... ...|++++|.++|+++++.+|
T Consensus 138 ---------~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~ 201 (308)
T 2ond_A 138 ---------IQYMKFARRAEGIKSGRMIFKKAREDARTR-------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 201 (308)
T ss_dssp ---------HHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 126777788999999999999999987744 24455555443 347999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICL--D--FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~--~--~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
++........++...|+.++|+..+++..... + ..+++...-+....+.|+.+.+...+...++..+.+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 88888888899999999999999999999853 2 345566666677788999999999999999866654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-08 Score=96.64 Aligned_cols=165 Identities=15% Similarity=0.135 Sum_probs=135.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+++|+.++...|.+ ..++..++.+|...|++++|.++++++++.+| ++...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4458999999999999999999999887644 46789999999999999999999999999999 888888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQ 601 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~ 601 (733)
.++...|++++|++.++.+....+.++..+..-+......|+.+.|+..++..++....+ + .++..+.. +..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~----~~~~~la~-~~~ 155 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---G----KVHRAIAF-SYE 155 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H----HHHHHHHH-HHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---h----HHHHHHHH-HHH
Confidence 999999999999999999998877778776666777888999999999999988843222 2 22222322 233
Q ss_pred hcCChhHHHHHHHHHHHHhhh
Q 004720 602 ETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 602 ~~~~~~~~l~~~~~A~~~l~~ 622 (733)
..|+.++.+.+++++...-++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 156 QMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHcCCC
Confidence 457888999999999876554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-10 Score=129.59 Aligned_cols=197 Identities=14% Similarity=0.060 Sum_probs=141.3
Q ss_pred CCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh--------hccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhcc
Q 004720 309 GDHHASLPVLAMKAWLGLGRYNEAELELRGMV--------EIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGR 379 (733)
Q Consensus 309 ~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l--------~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~ 379 (733)
.+.+|...++.+ ...|++++|+..+...+ ...+.....+...+..|...++ +.|...++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~--------- 457 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLD--------- 457 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHH---------
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHH---------
Confidence 456777766655 77889999999988877 5445555556666666655544 44444443
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
+.+ +..|++. ..+|+.|..+++.|+|++|
T Consensus 458 -------------~al--~~~p~~~------------------------------------~a~~~lg~~~~~~g~~~~A 486 (681)
T 2pzi_A 458 -------------DLA--ERVGWRW------------------------------------RLVWYRAVAELLTGDYDSA 486 (681)
T ss_dssp -------------HHH--HHHCCCH------------------------------------HHHHHHHHHHHHHTCHHHH
T ss_pred -------------HHh--ccCcchH------------------------------------HHHHHHHHHHHHcCCHHHH
Confidence 332 2233331 2455689999999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
++.|+.++.+.|.+ ...+.++|.||.++|++++ +++|++|++++| ++..++.+..++...|++++|+++|+
T Consensus 487 ~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 487 TKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998855 3578999999999999999 999999999999 89999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHh
Q 004720 539 AMTICLDFTTDFLSLAAHEAVACQA-----LSVAVAALSNLLN 576 (733)
Q Consensus 539 ~~~~~~~~~~~lL~la~~~a~~~~~-----~~~a~~aL~~Ll~ 576 (733)
++....+.+++.....+......+. ......|+..+-.
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred hhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 8888766555533332222222222 3445556655555
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-10 Score=105.19 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|+.+|+.++.+.|.+ +..+.++|.||..+|+|++|++.|++|++++| ++...+.+.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 4468999999999999999999999998855 45789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.++...|++++|++++++.....+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-09 Score=110.73 Aligned_cols=186 Identities=11% Similarity=-0.027 Sum_probs=138.3
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......+..++..|+|+.|...|.++++..+. ..+....+..+...+..+...|++++|+.++.++..+.+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345567888999999999999999988875321 111112234444567778899999999999999998876
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..... ...+.+++++|..+...|+ +++|+.+|++|+++.+..+.+ ......++.++|.+|...|+|
T Consensus 147 ~~~~~-~~~~~~~~~lg~~y~~~~~---~~~A~~~~~kal~~~~~~~~~----------~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 147 TGIDV-YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEALHDN----------EEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp CSSCT-THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCch-HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCcc----------ccchHHHHHhHHHHHHHHhhH
Confidence 53322 2257789999999999999 999999999999987665422 112235899999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCC---CcHHHHHHHHHHhcCChHHH-HHHHHHhh
Q 004720 292 ESVIKCVRVLREGSFDGGDHH---ASLPVLAMKAWLGLGRYNEA-ELELRGMV 340 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~---p~~~~lk~~il~~~g~~deA-i~~l~~~l 340 (733)
++|+.+++.+..+... .+.. +..++..+.++...|++++| ...+...+
T Consensus 213 ~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999988764310 1111 34558889999999999999 55566544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.2e-08 Score=119.07 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCC------Ch
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--SLIDRAQEYITEAEKLEP------NI 514 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--~~~~~A~e~~~~A~~ldp------~~ 514 (733)
++..+..+.+.|.|++|+..|+.+|...+... -++..++.+|.+- +++.++.++|.....+.| +.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~-------gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHM-------GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHh-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 44556666777777777777777776654332 2455555555543 456666666665555544 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLD--FTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~--~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+..--.-.+|.+-|+++.|+. +|..-.+ ++.+...- ...+-.|.+..-+++...++
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~---tm~~h~~~a~~~~~Fk~---~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKD---IITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHH---HHHhccHhhhhhHHHHH---HhcccccHHHHHHHHHHHHh
Confidence 223345566677777777775 3344321 33332222 22345677777777776665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=99.61 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=95.8
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+......|+.+++.|+|+.|+.+|++|+++.|. . ..++..++.++..+|++++|+.++++++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--------~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS--------N------ITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455668999999999999999999999987542 1 356778899999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
.|..+..+..++.+|+++|..+...|+ +++|+.+|++++.+
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~---~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQND---LSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence 999887788899999999999999999 99999999999987
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-09 Score=113.85 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch--------hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE--------NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--------~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..+++.|+|++|++.|+.++.+.|.+.. ..+..+.++.++|.||.++|++++|+++|++|++++|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3446999999999999999999999999886520 1134578999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAV-AALSNLLNF 577 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~-~aL~~Ll~~ 577 (733)
++...+.+..++...|++++|+.+++++....+.+++....-+......++...+. ..++.+++.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998877776555555555666666663 344555553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-09 Score=101.24 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.+++.|..+++.|+|++|+++|+.++.+.|.+ ..++.+++.||..+|++++|+++|+++++++| ++...+.+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35569999999999999999999999988754 46899999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
..++...|++++|++++++.....+.+++
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999988876665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-08 Score=109.40 Aligned_cols=235 Identities=10% Similarity=0.008 Sum_probs=171.7
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHh---hccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLD---ISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~---~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
+..|+..++.|+|+.|...|.++++..+... ..+.............+...+.++..+|++++|+.++.++..+.+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4457778888999999999999987654211 1111111222223345667789999999999999999999998877
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
.++. .....++.++|..+...|+ +++|+..+++++++..+... ...+++++..||.+|...|+|+
T Consensus 88 ~~~~-~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 88 FAKS-KTVKVLKTLIEKFEQVPDS---LDDQIFVCEKSIEFAKREKR-----------VFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp SCHH-HHHHHHHHHHHHHCSCCSC---HHHHHHHHHHHHHHHHHSSC-----------CSSHHHHHHHHHHHHHHHTCHH
T ss_pred ccch-HHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHHHHccChH
Confidence 6542 3345667778988888888 99999999999998665421 2346789999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHH
Q 004720 293 SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGV 372 (733)
Q Consensus 293 kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~ 372 (733)
+|+.+++.+..+. ...+
T Consensus 153 ~A~~~l~~~~~~~---~~~~------------------------------------------------------------ 169 (434)
T 4b4t_Q 153 DSLALINDLLREF---KKLD------------------------------------------------------------ 169 (434)
T ss_dssp HHHHHHHHHHHHH---TTSS------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---Hhcc------------------------------------------------------------
Confidence 9998887775521 0000
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
..+ .+ ..++.+.|..+..
T Consensus 170 --------------------------~~~-------~~-----------------------------~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 170 --------------------------DKP-------SL-----------------------------VDVHLLESKVYHK 187 (434)
T ss_dssp --------------------------CST-------HH-----------------------------HHHHHHHHHHHHH
T ss_pred --------------------------cch-------hH-----------------------------HHHHHHHHHHHHH
Confidence 000 00 0012247888999
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.|+|++|..+|+.++.+.+.....+...+.++..++..|...++|++|..++.++++.
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999997654332223467899999999999999999999999998765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-09 Score=109.05 Aligned_cols=186 Identities=11% Similarity=-0.022 Sum_probs=139.5
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
.....+.+..++..|+|+.|...|+++.+..+ . ..+....+.++...+..+...|+++.|+.++.+++.+.+
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~------~--~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE------Y--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC------C--CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc------C--ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 34445567888999999999999998876321 1 111112233444457777889999999999999999766
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..++. ...+.++.++|..+...|+ +++|+.+|++|+++.++.+.+ ......++.++|.+|...|+|
T Consensus 147 ~~~~~-~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 147 TGIDV-YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEALHDN----------EEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp CCSCT-THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSSCC----------HHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccH-HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcccc----------hhHHHHHHHHHHHHHHHHhHH
Confidence 54432 2456789999999999999 999999999999987764321 334567999999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCC---CcHHHHHHHHHHhcCC-hHHHHHHHHHhh
Q 004720 292 ESVIKCVRVLREGSFDGGDHH---ASLPVLAMKAWLGLGR-YNEAELELRGMV 340 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~---p~~~~lk~~il~~~g~-~deAi~~l~~~l 340 (733)
++|+.+++.+.++... .+.. +..++..+.++...|+ +++|+..+...+
T Consensus 213 ~~A~~~~~~al~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 213 EESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999888774320 1111 3456889999999995 699999988665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-09 Score=99.78 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+..|+.++...|.+ ...+.++|.||..+|++++|+++|+++++++| ++...+.+.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4458999999999999999999999988755 45789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.++...|++++|++++++.....+.+|+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999988777764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-08 Score=92.41 Aligned_cols=154 Identities=9% Similarity=-0.042 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 128 AIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 128 ~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
....+......|..+...|+++.|..+|++|++..+... +.......+...+.++...|++++|+.+++++.
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--------DKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677888999999999999999999999999876421 111123456677899999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
.+.+..+. ....+.+++++|..+...|+ +++|..++++++++.+.... ......++..++.+|..
T Consensus 77 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 77 LLARQLKD-RAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQELKD-----------RIGEGRACWSLGNAYTA 141 (164)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHccc-----------hHhHHHHHHHHHHHHHH
Confidence 99876432 34567889999999999999 99999999999999665321 22345688999999999
Q ss_pred cCcHHHHHHHHHHHHcc
Q 004720 288 KGEYESVIKCVRVLREG 304 (733)
Q Consensus 288 ~~~~ekAl~~l~~a~~~ 304 (733)
.|++++|+.+++.+.++
T Consensus 142 ~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-09 Score=102.64 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhh---------hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENR---------ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~---------~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+.+.|..+++.|+|++|+++|+.++.+.|.+.... .....++.++|.||..+|++++|+++++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 345699999999999999999999999887654100 01247899999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
++...+.+..++...|++++|++++++.....+.+++.......
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 89999999999999999999999999999988777765544433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=91.63 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~ 518 (733)
+++.|..+++.|+|++|++.|+.++...|.+. .....+..+|.||...|++++|++.++++++.+| + +...+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 34689999999999999999999999888653 4567899999999999999999999999999999 7 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.+..++...|++++|+..++.+....+.++.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999999999988766555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-09 Score=96.82 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|..+++.|+|++|+.+|+.++...|.+ ...+.++|.||..+|++++|++.|+++++++| ++...+.+.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4468999999999999999999999987754 45789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.++...|++++|+++++......+.+|+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 99999999999999999999887766664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=94.79 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|..++..|+|++|+++|+.++...|.+ ..++.++|.||..+|++++|+++++++++++| ++...+.+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4468999999999999999999999987744 46789999999999999999999999999999 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL--AAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l--a~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.++...|++++|+++++++....+.+++.... .+....+.|+.+.|+..+....+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999987777764321 22334455677777766655443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=89.77 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.++..|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|+++++++++.+| ++...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 44568999999999999999999999887644 46789999999999999999999999999999 88899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVA 560 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~ 560 (733)
..++...|++++|++.++......+.++.....-+.....
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 9999999999999999999998877667654444343333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=93.17 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+...|..+++.|+|++|+++|+.++...|.+ .....++.+++.||...|++++|+++++++++++| ++...+.+.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3458999999999999999999999988754 24578999999999999999999999999999999 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.++...|++++|++++++.....+.++++...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 99999999999999999999987777775544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.1e-09 Score=115.27 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch--------hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE--------NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--------~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|+.+++.|+|++|+..|+.++.+.|.+.. ..+..+.++.|+|.||.++|+|++|+++|++|++++|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 3446999999999999999999999998886520 0134578999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHh
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAA-LSNLLN 576 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~a-L~~Ll~ 576 (733)
++..++.+..++...|++++|+.+++++....+.+++....-.......++...+.+. +..+++
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998776666555444444455555555433 344444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-08 Score=87.47 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
..|..++..|+|++|+++|+.++...|.+ ...+..++.+|...|++++|.+.++++.+.+| ++...+.+..+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 47899999999999999999999876643 35788999999999999999999999999999 78888889999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
+...|++++|++.++.+....+.++..+...+......|+.+.|...++..++.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999999887777776666667778899999999888887763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-08 Score=91.30 Aligned_cols=103 Identities=19% Similarity=0.144 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|+++++++++++| ++...+.+.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3458999999999999999999999987644 46799999999999999999999999999999 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
.++...|++++|+++++......+.+++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 122 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999999887655555433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-08 Score=98.04 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.+|+.|..++..|+|++|++.|+.++. | .+.+++++|.+|..+|++++|+++++++++++| ++...+.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~--~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD--P--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS--C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC--C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 357899999999999999999999852 1 246899999999999999999999999999999 88999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTT----------------DFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~----------------~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
..++...|++++|++++++.....+.++ ..+..-+......|+.+.|+..++..++.
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999999998765544 55555567777899999999999998884
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=6.4e-09 Score=94.28 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
.+.|..+++.|+|++|+..|+.++...|.+ +..++++|.+|..+|++++|++.+++|++++| ++...+.+..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPER-------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 358999999999999999999999988754 46789999999999999999999999999999 8999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
++...|++++|+..++++....+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999999877543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=98.39 Aligned_cols=163 Identities=14% Similarity=0.061 Sum_probs=122.9
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|..++..|+++.|...|++|++..|. . ...+...+.++...|++++|+..++++....| .+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--------R------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--------S------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------c------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 456788889999999999999999987763 1 24555668888999999999999999998888 65
Q ss_pred hhHHHHHHHHHHHhHH-HHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 215 EHYKSLANQYLTFAKS-ALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~-~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
..... .|.. +...++ ..+|+..|++++++ +|.+. .++..+|.+|...|++++
T Consensus 74 ~~~~~-------~~~~~~~~~~~---~~~a~~~~~~al~~---~P~~~--------------~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 74 SYKSL-------IAKLELHQQAA---ESPELKRLEQELAA---NPDNF--------------ELACELAVQYNQVGRDEE 126 (176)
T ss_dssp HHHHH-------HHHHHHHHHHT---SCHHHHHHHHHHHH---STTCH--------------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-------HHHHHHHhhcc---cchHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHcccHHH
Confidence 43221 1211 112233 35578999999998 55332 278889999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
|+.+++.+.+..+ ...++...+..+.++...|+.++|+..+++.+.
T Consensus 127 A~~~~~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 127 ALELLWNILKVNL--GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCT--TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999998887531 122355778889999999999999999987663
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-08 Score=86.14 Aligned_cols=104 Identities=11% Similarity=-0.052 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
++..|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|.++++++++++| ++...+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4568999999999999999999999987754 45789999999999999999999999999999 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.++...|++++|++.++......+.+++....
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999887777764443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-08 Score=116.98 Aligned_cols=155 Identities=8% Similarity=-0.022 Sum_probs=115.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004720 145 LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQY 224 (733)
Q Consensus 145 ~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~ 224 (733)
.|+++.|..+|++|++..+. . ...+...+.++..+|++++|+..++++.++.|..+. .+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~ 60 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--------D------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE-------AV 60 (568)
T ss_dssp -------------------C--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH-------HH
T ss_pred CccHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Confidence 47899999999999886542 1 245666788999999999999999999999987653 58
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
+++|..+...|+ +++|+.+|++++++ ++.+ ..++..+|.+|...|++++|+.+++.+.+.
T Consensus 61 ~~lg~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 61 ARLGRVRWTQQR---HAEAAVLLQQASDA---APEH--------------PGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999 99999999999998 5422 237889999999999999999999999886
Q ss_pred CCCCCCCCCcHHHHHHHHHHhc---CChHHHHHHHHHhhhccC
Q 004720 305 SFDGGDHHASLPVLAMKAWLGL---GRYNEAELELRGMVEIKG 344 (733)
Q Consensus 305 ~~~~~~~~p~~~~lk~~il~~~---g~~deAi~~l~~~l~~~~ 344 (733)
.+.++..++..+.++... |++++|+..+.+.+...+
T Consensus 121 ----~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 121 ----LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred ----CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 456778889999999999 999999999999884433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=92.07 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.+++.|..+++.|+|++|+.+|+.++...|.+ ..++.++|.||..+|++++|+++++++++++| ++...+.+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45569999999999999999999999987754 46899999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
..++...|++++|++.++.+....+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999999999887754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=101.92 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHH
Q 004720 199 AITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTL 278 (733)
Q Consensus 199 A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l 278 (733)
+...+.+++.+.|..+ ..++++|..++..|+ +++|+.+|++++++ +|.+. ..|
T Consensus 21 ~~~~l~~al~l~p~~~-------~~~~~lg~~~~~~g~---~~eA~~~~~~al~~---~P~~~--------------~~~ 73 (151)
T 3gyz_A 21 SGATLKDINAIPDDMM-------DDIYSYAYDFYNKGR---IEEAEVFFRFLCIY---DFYNV--------------DYI 73 (151)
T ss_dssp TSCCTGGGCCSCHHHH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCH--------------HHH
T ss_pred CCCCHHHHhCCCHHHH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCH--------------HHH
Confidence 3445666677766544 468999999999999 99999999999999 65332 279
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 279 RFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 279 ~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
..||.+|...|+|++|+.+++.+.++ .+.+|..++..+.++...|++++|+..+.+.+...+
T Consensus 74 ~~lg~~~~~~g~~~~Ai~~~~~al~l----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 74 MGLAAIYQIKEQFQQAADLYAVAFAL----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999987 578899999999999999999999999999885443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-07 Score=98.71 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=157.4
Q ss_pred HHHHHccCH-HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcC--CCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 188 RTAWEVLEQ-NLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN--ETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 188 ~~a~~~g~~-~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~--~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
.+.+..|.+ ++|+.++++++.+.|.... +.+..|..+...+ + +++++.++.+++.+ +|.+.
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~t-------aWn~R~~~L~~l~~~~---~~eeL~~~~~~L~~---nPk~y--- 103 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYT-------IWIYRFNILKNLPNRN---LYDELDWCEEIALD---NEKNY--- 103 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHTCTTSC---HHHHHHHHHHHHHH---CTTCC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHH-------HHHHHHHHHHHccccc---HHHHHHHHHHHHHH---CcccH---
Confidence 344556666 5899999999999998664 4777788888888 6 99999999999998 55332
Q ss_pred hhhhhhhhcHHHHHHHHHHHH----hcc---CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChH--HHHHH
Q 004720 265 EETTELKGLKFKTLRFISAIH----LQK---GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYN--EAELE 335 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~y----l~~---~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~d--eAi~~ 335 (733)
.+|...+.+. ... +++++++.+++.+.+. .+.+..+++-+.-++...|.++ +++..
T Consensus 104 -----------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 104 -----------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 1555555555 334 6899999999999886 4567778889999999999887 77776
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+..++.. +|.+..+|..|..+
T Consensus 169 ~~~~i~~---------------------------------------------------------d~~N~sAW~~R~~l-- 189 (306)
T 3dra_A 169 VDKVIDT---------------------------------------------------------DLKNNSAWSHRFFL-- 189 (306)
T ss_dssp HHHHHHH---------------------------------------------------------CTTCHHHHHHHHHH--
T ss_pred HHHHHHh---------------------------------------------------------CCCCHHHHHHHHHH--
Confidence 6655532 12222222222111
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC------HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD------YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~------y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
..+.++ |+++++++..++...|.|. .+...+..
T Consensus 190 ----------------------------------l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~-------SaW~y~~~ 228 (306)
T 3dra_A 190 ----------------------------------LFSKKHLATDNTIDEELNYVKDKIVKCPQNP-------STWNYLLG 228 (306)
T ss_dssp ----------------------------------HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH-------HHHHHHHH
T ss_pred ----------------------------------HHhccccchhhhHHHHHHHHHHHHHhCCCCc-------cHHHHHHH
Confidence 112222 7788888888888877664 34566677
Q ss_pred HHHhCCC-HHHHHHHHHHHHhhC---C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 490 CYLGLSL-IDRAQEYITEAEKLE---P-NIASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 490 cyl~l~~-~~~A~e~~~~A~~ld---p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
++.++|. ++...+.+.++..++ | +++....++.++.+.|+.++|+++++.+..
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777766 344556777776665 6 777888888888888888888888888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.6e-09 Score=110.60 Aligned_cols=159 Identities=17% Similarity=0.080 Sum_probs=129.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc--------h
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF--------E 215 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~--------~ 215 (733)
.+++++.|..+|+++++..+. ....+..++.++...|+++.|+.+|++|+.+.|..+ .
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~--------------~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 190 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE--------------QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred EEeecccccchhcCCHHHHHH--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 677888888888887765432 124556678899999999999999999999998763 1
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHH
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVI 295 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl 295 (733)
.....+.+++++|.+++..|+ +++|+.+|++++++ +|.+ ..++..+|.+|...|+|++|+
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~a~~~lg~~~~~~g~~~~A~ 250 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQA---FSAAIESCNKALEL---DSNN--------------EKGLSRRGEAHLAVNDFELAR 250 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCc--------------HHHHHHHHHHHHHCCCHHHHH
Confidence 223446789999999999999 99999999999999 5422 237889999999999999999
Q ss_pred HHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHH-HHhh
Q 004720 296 KCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELEL-RGMV 340 (733)
Q Consensus 296 ~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l-~~~l 340 (733)
.+++.+.++ .+.++.+.+..+.++...|++++|...+ ..++
T Consensus 251 ~~~~~al~l----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 251 ADFQKVLQL----YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH----CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 4667788899999999999999986654 4443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.4e-08 Score=94.85 Aligned_cols=136 Identities=10% Similarity=0.192 Sum_probs=110.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
.+..+|.+|...|+|++|+.+++.+.. .+|.+++..+.++...|++++|+..+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 66 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD-------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR-------------- 66 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Confidence 567889999999999999999987742 26777899999999999999999987755431
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
.|++..
T Consensus 67 -------------------------------------------~~~~~~------------------------------- 72 (213)
T 1hh8_A 67 -------------------------------------------DKHLAV------------------------------- 72 (213)
T ss_dssp -------------------------------------------CTTCHH-------------------------------
T ss_pred -------------------------------------------CccchH-------------------------------
Confidence 111110
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc----------hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV----------ENRILRAKSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~----------~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
.+.+.|..+++.|+|++|+++|+.++...|.+. . .+....++.++|.+|..+|++++|.+++++
T Consensus 73 -----~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 73 -----AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF-KLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC-EEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc-CccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 123478999999999999999999999888653 2 246678999999999999999999999999
Q ss_pred HHhhCCC
Q 004720 507 AEKLEPN 513 (733)
Q Consensus 507 A~~ldp~ 513 (733)
+++++|+
T Consensus 147 al~~~p~ 153 (213)
T 1hh8_A 147 ATSMKSE 153 (213)
T ss_dssp HHTTCCS
T ss_pred HHHcCcc
Confidence 9999993
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-08 Score=89.30 Aligned_cols=103 Identities=17% Similarity=-0.067 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
|+.+..++++|.+|.+.|+|++|++.|++|++++| ++...+.+..++...|++++|++++++.....+.+++.+..-+.
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 57889999999999999999999999999999999 89999999999999999999999999999998888887666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
.....|+.+.|+..++..++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC
Confidence 788899999999999999995433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=109.70 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc----------hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDV----------ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~----------~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
.+.+.|..+++.|+|++|++.|+.++.+.+... . .+..+.++.++|.||.++|++++|+++|++|++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~-~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL-QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 345689999999999999999999998554320 1 25788999999999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHH
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVA 567 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a 567 (733)
| ++...+.+..++...|++++|++++++.....+.++++...........++...+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999999999999999999999999999877776554443333333334333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.8e-08 Score=92.64 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=122.1
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..+...|+++.|..+|++|++...... .. ......+...+.++...|++++|+.++.++..+.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-----DH---TAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-----Cc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 355667789999999999999999999999875311 11 1123566677899999999999999999999997
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
...+......+.+++++|..+...|+ +++|..++++++++.+... + ......++..++.+|...|+
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~-~----------~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGD---LAGARQEYEKSLVYAQQAD-D----------QVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcc-c----------hHHHHHHHHHHHHHHHHCcC
Confidence 66553444677889999999999999 9999999999999865431 1 22345578999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 004720 291 YESVIKCVRVLREG 304 (733)
Q Consensus 291 ~ekAl~~l~~a~~~ 304 (733)
+++|+.+++.+..+
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=94.04 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHH
Q 004720 241 NDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAM 320 (733)
Q Consensus 241 e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~ 320 (733)
++|..||+++.+. + + ...+..|+.+|...+++++|+.+++.+.+. .+|.+.+..+
T Consensus 3 ~eA~~~~~~aa~~---g--~--------------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg 57 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---G--D--------------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLA 57 (212)
T ss_dssp -CTTHHHHHHHHT---T--C--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHH
T ss_pred chHHHHHHHHHHC---C--C--------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHH
Confidence 6788999999875 2 1 127888999999999999999999988762 4677777777
Q ss_pred HHHHhcC----ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhc
Q 004720 321 KAWLGLG----RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAG 396 (733)
Q Consensus 321 ~il~~~g----~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~ 396 (733)
.++.. + ++++|+..+++.+..
T Consensus 58 ~~y~~-~g~~~~~~~A~~~~~~A~~~------------------------------------------------------ 82 (212)
T 3rjv_A 58 QLKIR-NPQQADYPQARQLAEKAVEA------------------------------------------------------ 82 (212)
T ss_dssp HHTTS-STTSCCHHHHHHHHHHHHHT------------------------------------------------------
T ss_pred HHHHc-CCCCCCHHHHHHHHHHHHHC------------------------------------------------------
Confidence 77776 5 677777776543210
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCC
Q 004720 397 DEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPF 472 (733)
Q Consensus 397 ~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~ 472 (733)
+ ++. ..++.|..++. .+++++|++||+.+....+.
T Consensus 83 --g---~~~------------------------------------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 83 --G---SKS------------------------------------GEIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp --T---CHH------------------------------------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred --C---CHH------------------------------------HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 0 100 11235666666 78999999999999986542
Q ss_pred CchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 004720 473 DVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQK-N-----DQEGAINQILAMTI 542 (733)
Q Consensus 473 ~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~-g-----d~e~Al~~l~~~~~ 542 (733)
+ +.+..+++++.+|.. .+++++|++.+++|.++.+++...+.+..+|... | |.++|++.++....
T Consensus 122 ~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 122 D-----AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp H-----HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c-----chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 346789999999999 8999999999999998833778888899998763 3 89999999988877
Q ss_pred cc
Q 004720 543 CL 544 (733)
Q Consensus 543 ~~ 544 (733)
..
T Consensus 197 ~g 198 (212)
T 3rjv_A 197 EG 198 (212)
T ss_dssp HT
T ss_pred cC
Confidence 63
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-08 Score=93.07 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHH----HHHHHHHHHHHHHHHHHccCHHHHH
Q 004720 125 PSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDE----RKLLLDINIARSRTAWEVLEQNLAI 200 (733)
Q Consensus 125 ~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e----~~~~l~~l~~rA~~a~~~g~~~~A~ 200 (733)
++..+..+......|+.+++.|+|+.|+.+|++|++.++.........+.+ ......++..+|.++...|+++.|+
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 345567888899999999999999999999999999977543211111111 1124568889999999999999999
Q ss_pred HHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 201 TLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 201 ~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
.++++++.++|..++ +++++|.++...|+ +++|+.+|++++++
T Consensus 84 ~~~~~al~~~p~~~~-------a~~~~g~~~~~~g~---~~~A~~~~~~al~l 126 (162)
T 3rkv_A 84 ETSSEVLKREETNEK-------ALFRRAKARIAAWK---LDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHSTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchH-------HHHHHHHHHHHHhc---HHHHHHHHHHHHhc
Confidence 999999999998764 58999999999999 99999999999999
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.85 E-value=8e-08 Score=85.24 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=107.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
+...+..+...|+++.|+..+.++....|..+ ..++.+|..+...|+ +++|..++++++.. .+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~-- 68 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-------EAWYNLGNAYYKQGD---YDEAIEYYQKALEL---DPRS-- 68 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC--
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch-------hHHHHHHHHHHHhcC---HHHHHHHHHHHHHH---CCCc--
Confidence 34557788899999999999999998877654 357788888889999 99999999999987 4321
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
..++..++.+|...|++++|+.+++.+... .+.++...+..+.++...|++++|+..+..++.
T Consensus 69 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 69 ------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp ------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 126778999999999999999999988875 345677788999999999999999999987764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-08 Score=90.64 Aligned_cols=142 Identities=16% Similarity=0.060 Sum_probs=114.5
Q ss_pred CCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 004720 123 GIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITL 202 (733)
Q Consensus 123 ~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~ 202 (733)
+++....+.+......|..++..|+++.|..+|++|++..+. . ..++...+.++...|++++|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------~------~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 4 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS--------N------AIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------C------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C------hHHHHHHHHHHHHcCCHHHHHHH
Confidence 345677788899999999999999999999999999986431 1 24566778899999999999999
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHH
Q 004720 203 LNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFIS 282 (733)
Q Consensus 203 ~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La 282 (733)
+.++..+.|..+. +++++|..+...|+ +++|+.+|++++++ .+.+. ....+..++
T Consensus 70 ~~~a~~~~~~~~~-------~~~~~a~~~~~~~~---~~~A~~~~~~a~~~---~p~~~------------~~~~~~~~~ 124 (166)
T 1a17_A 70 ATRAIELDKKYIK-------GYYRRAASNMALGK---FRAALRDYETVVKV---KPHDK------------DAKMKYQEC 124 (166)
T ss_dssp HHHHHHHCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---STTCH------------HHHHHHHHH
T ss_pred HHHHHHhCcccHH-------HHHHHHHHHHHhcc---HHHHHHHHHHHHHh---CCCCH------------HHHHHHHHH
Confidence 9999999887653 58899999999999 99999999999998 44221 111334456
Q ss_pred HHHhccCcHHHHHHHHHHHHc
Q 004720 283 AIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 283 ~~yl~~~~~ekAl~~l~~a~~ 303 (733)
..+...|++++|+.++.....
T Consensus 125 ~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 125 NKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccchHH
Confidence 668888999999998877654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=109.74 Aligned_cols=136 Identities=11% Similarity=0.023 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh----------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN----------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~----------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.+.|+.+++.|+|++|+.+|+.++.+.|.+... ......++.++|.||.++|+|++|+++|+++++++|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 261 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE 261 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4469999999999999999999999988744200 001124899999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhh
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHE-AVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~-a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
++..++.+..++...|++++|+++++++....+.+++....-... ....+..+.+...+..+++..
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999999999988876666543332222 223344555566667777643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=90.01 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
..|+|++|+.+|+.++...+.+ ++...++.++|.+|..+|++++|+++++++++++| ++...+.+..++...|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence 4689999999999999975432 46788999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHH
Q 004720 531 EGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~~lL 551 (733)
++|++.+++.....+.++++.
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHH
Confidence 999999999998887777744
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=82.80 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
...|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|+.+++++++.+| ++...+.+..
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 348999999999999999999999887643 35789999999999999999999999999999 8888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
++...|++++|++.++.+....+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 116 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999887767764443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.79 E-value=5e-08 Score=93.02 Aligned_cols=122 Identities=11% Similarity=-0.015 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
+..+..++..|+..++.|+|+.|+.+|++|+++.|..... ............+.+++.++...|++++|+.++++|+.
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~--~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE--EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT--SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch--hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4467888999999999999999999999999998741100 00011111233788999999999999999999999999
Q ss_pred h-------hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 209 L-------LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 209 l-------~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
+ .|+.++. ....+|+.|..+...|+ +++|+..|++|+++...+.
T Consensus 86 l~n~~~e~~pd~~~A---~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 86 YFNRRGELNQDEGKL---WISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHCCTTSTHHHH---HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCC
T ss_pred hhhccccCCCchHHH---HHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcH
Confidence 9 8764432 33345999999999999 9999999999999965544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=95.57 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+..++..+...|+++.|+..++++..+.|..+. +++++|..+...|+ +++|+..|++++.. .| +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-------a~~~la~~~~~~g~---~~~A~~~~~~a~~~---~p-~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-------VKLAKADCLLETKQ---FELAQELLATIPLE---YQ-DN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-------HHHHHHHHHHHTTC---HHHHHHHHTTCCGG---GC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-------HHHHHHHHHHHCCC---HHHHHHHHHHhhhc---cC-Ch
Confidence 4556788899999999999999999999998764 58889999999999 99999999988766 43 21
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 262 RTREETTELKGLKFKTLRFISAIHL-QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl-~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
. ....++.+.+ ..+...+|+.+++.+.+. .+.+|...+..+.++...|++++|+..+...+
T Consensus 74 ~--------------~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 74 S--------------YKSLIAKLELHQQAAESPELKRLEQELAA----NPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp H--------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHhhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 1222232222 222334578888888876 46788889999999999999999999999998
Q ss_pred hccCCc--hHHHHhHHHHHHHhch-hhhHHHHHHHHH
Q 004720 341 EIKGIP--ECIWVSAVEAYFQAAG-TAGAETAKGVFL 374 (733)
Q Consensus 341 ~~~~~~--~~~~ls~~~ly~~~~~-~~a~~~lk~~l~ 374 (733)
...|.+ ...+...+.+|...++ +.+...+++.+.
T Consensus 136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 555443 3466677788877766 667777776544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-07 Score=90.77 Aligned_cols=177 Identities=10% Similarity=0.016 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 198 LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 198 ~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
+|+..+.++.+. ..+ ..++++|..+...++ +++|+.||++|.+. + + ...
T Consensus 4 eA~~~~~~aa~~--g~~-------~a~~~lg~~~~~~~~---~~~A~~~~~~a~~~---g--~--------------~~a 52 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR-------RAQYYLADTWVSSGD---YQKAEYWAQKAAAQ---G--D--------------GDA 52 (212)
T ss_dssp CTTHHHHHHHHT--TCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHHT---T--C--------------HHH
T ss_pred hHHHHHHHHHHC--CCH-------HHHHHHHHHHhcCCC---HHHHHHHHHHHHHc---C--C--------------HHH
Confidence 577888888864 334 358889999999999 99999999999875 2 1 126
Q ss_pred HHHHHHHHhccC----cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHH
Q 004720 278 LRFISAIHLQKG----EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 278 l~~La~~yl~~~----~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
+..|+.+|.. + ++++|+.+++.+.. ..+|.+.+..+.++.. .+++++|+..+.+.+...
T Consensus 53 ~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------ 119 (212)
T 3rjv_A 53 LALLAQLKIR-NPQQADYPQARQLAEKAVE------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ 119 (212)
T ss_dssp HHHHHHHTTS-STTSCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------
T ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------
Confidence 8889999998 6 89999999999865 3578888888888876 677888887766543210
Q ss_pred HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004720 350 WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDG-VSEAAVKLRAKAVAELVSDERVLALFV 428 (733)
Q Consensus 350 ~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp-~~~~~l~~ka~~l~~l~~~e~v~~~~~ 428 (733)
+. +++.
T Consensus 120 --------------------------------------------------~~~~~~~----------------------- 126 (212)
T 3rjv_A 120 --------------------------------------------------ESDAAVD----------------------- 126 (212)
T ss_dssp --------------------------------------------------TSHHHHH-----------------------
T ss_pred --------------------------------------------------CCcchHH-----------------------
Confidence 00 0000
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-C-----CHH
Q 004720 429 GDAAAKERIAMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-S-----LID 498 (733)
Q Consensus 429 g~~~~~~~~~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-~-----~~~ 498 (733)
...+.|..++. .+++++|++||+.+... +.+ ...+++++.+|..- | +++
T Consensus 127 -------------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-------~~a~~~Lg~~y~~g~gg~~~~d~~ 185 (212)
T 3rjv_A 127 -------------AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-------GYAEYWAGMMFQQGEKGFIEPNKQ 185 (212)
T ss_dssp -------------HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-------THHHHHHHHHHHHCBTTTBCCCHH
T ss_pred -------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-------HHHHHHHHHHHHcCCCCCCCCCHH
Confidence 11235666777 88999999999999876 322 23689999999865 3 899
Q ss_pred HHHHHHHHHHhhCC
Q 004720 499 RAQEYITEAEKLEP 512 (733)
Q Consensus 499 ~A~e~~~~A~~ldp 512 (733)
+|++.+++|.+...
T Consensus 186 ~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 186 KALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999987744
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.6e-08 Score=88.37 Aligned_cols=146 Identities=10% Similarity=-0.057 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+...+.+++..|++++|+.++.++..+.+..+. ....+.+++++|..+...|+ +++|..++++++++.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGE---FETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCC
Confidence 356667788999999999999999999999876332 34567889999999999999 99999999999999665321
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCC-CCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGG-DHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~-~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
......++..+|.+|...|++++|+.+++.+..... ... ...+...+..+.++...|++++|+..+.
T Consensus 85 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 85 -----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 223456889999999999999999999888776421 000 0112345778889999999999999987
Q ss_pred Hhh
Q 004720 338 GMV 340 (733)
Q Consensus 338 ~~l 340 (733)
..+
T Consensus 154 ~a~ 156 (164)
T 3ro3_A 154 KHL 156 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=111.59 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
+|+.||.++++.|++++|++++..+ .+|+++...+.++...|++++|+.++.+.....+. ..+...++.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika---------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC---------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 8999999999999999999998654 46788888899999999999999988766643222 2333334444
Q ss_pred HHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 357 YFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 357 y~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
|.+.++ .. +..|+ + .|+.
T Consensus 104 Y~Klg~l~e--------------------------~e~f~--~-~pn~-------------------------------- 122 (449)
T 1b89_A 104 LAKTNRLAE--------------------------LEEFI--N-GPNN-------------------------------- 122 (449)
T ss_dssp -----CHHH--------------------------HTTTT--T-CC----------------------------------
T ss_pred HHHhCCHHH--------------------------HHHHH--c-CCcH--------------------------------
Confidence 443322 00 11222 1 1200
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChH
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIA 515 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~ 515 (733)
..+-+.|..+++.|+|++|..+|..+ + -+.+++.|+.++|+|+.|++.+.+| .++.
T Consensus 123 -----~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~----------n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~ 178 (449)
T 1b89_A 123 -----AHIQQVGDRCYDEKMYDAAKLLYNNV-----S----------NFGRLASTLVHLGEYQAAVDGARKA----NSTR 178 (449)
T ss_dssp -------------------CTTTHHHHHHHT-----T----------CHHHHHHHHHTTTCHHHHHHHHHHH----TCHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHh-----h----------hHHHHHHHHHHhccHHHHHHHHHHc----CCch
Confidence 01113789999999999999999976 1 2578999999999999999999988 2566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+....-.+.+..|+++.|..+...+. ..|+-+.-.+....+.|..+.++..|+.-++
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 66666777888888988877665432 3666555556667778888888888887776
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.7e-07 Score=98.79 Aligned_cols=219 Identities=10% Similarity=0.008 Sum_probs=157.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhhhcCc----------hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 184 IARSRTAWEVLEQNLAITLLNRAKCLLFGLF----------EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 184 ~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~----------~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+-+|+.+...|++++|+..|.++.+..+... .........+.++|..+...|+ +++|..++++++.+
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~---~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA---KDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 4568888999999999999999999876532 2234555678899999999999 99999999999998
Q ss_pred HhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHH
Q 004720 254 CEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAE 333 (733)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi 333 (733)
.++... ......+...++.++...|++++|+.+++.+..+.
T Consensus 85 ~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 125 (434)
T 4b4t_Q 85 MMQFAK-----------SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA---------------------------- 125 (434)
T ss_dssp HHTSCH-----------HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHccc-----------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----------------------------
Confidence 664310 11122355666777777777777776665554310
Q ss_pred HHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 004720 334 LELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA 413 (733)
Q Consensus 334 ~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~ 413 (733)
+ .. ...+ .+
T Consensus 126 ------------------------------------~----------------------~~---~~~~-------~~--- 134 (434)
T 4b4t_Q 126 ------------------------------------K----------------------RE---KRVF-------LK--- 134 (434)
T ss_dssp ------------------------------------H----------------------HS---SCCS-------SH---
T ss_pred ------------------------------------H----------------------Hh---CccH-------HH---
Confidence 0 00 0000 00
Q ss_pred HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh
Q 004720 414 VAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG 493 (733)
Q Consensus 414 l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~ 493 (733)
..+..+.|..++..|+|++|+..++.++........ ++..+.++.+++.+|..
T Consensus 135 --------------------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 135 --------------------------HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD-KPSLVDVHLLESKVYHK 187 (434)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-STHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHH
Confidence 012224788999999999999999999865443222 36789999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC---Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 494 LSLIDRAQEYITEAEKLEP---NI-----ASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 494 l~~~~~A~e~~~~A~~ldp---~~-----~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
+|++++|+.++++++.+.+ ++ ........++...|++++|..++.....
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988743 11 2234567888899999999988876654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-08 Score=110.35 Aligned_cols=156 Identities=17% Similarity=0.088 Sum_probs=123.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch--------
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE-------- 215 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~-------- 215 (733)
.+++++.|..+|+++.+..+. ....+..++..+...|+++.|+.+|++|+.+.|..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~--------------~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLE--------------QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHH--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH
Confidence 566777777777776654432 1245566788999999999999999999999987631
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHH
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVI 295 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl 295 (733)
.....+.+|+++|.+++..++ |++|+.+|++|+++ ++.+ ..++..+|.+|...++|++|+
T Consensus 312 ~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 312 SESFLLAAFLNLAMCYLKLRE---YTKAVECCDKALGL---DSAN--------------EKGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---STTC--------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhc---CCcc--------------HHHHHHHHHHHHHccCHHHHH
Confidence 223346789999999999999 99999999999999 5422 237889999999999999999
Q ss_pred HHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 296 KCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 296 ~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.+++.+.++ .+.++.++.....++...++++++...+.
T Consensus 372 ~~~~~al~l----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~ 409 (457)
T 1kt0_A 372 GDFEKVLEV----NPQNKAARLQISMCQKKAKEHNERDRRIY 409 (457)
T ss_dssp HHHHHHHTT----C----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 46777888999999999999998887753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=89.44 Aligned_cols=114 Identities=10% Similarity=-0.100 Sum_probs=99.7
Q ss_pred HHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 461 ~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
..|+.++.+.| +....++++|.++...|++++|++.|+++++++| ++...+.+..++...|++++|++++++
T Consensus 8 ~~~~~al~~~p-------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 8 GTIAMLNEISS-------DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp CSHHHHTTCCH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHcCCH-------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45667777654 4567789999999999999999999999999999 899999999999999999999999999
Q ss_pred HHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 540 MTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 540 ~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.....+.+++.+...+......|+.+.|+..++..++..+.+
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 999988888876666777888999999999999999955443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.5e-08 Score=108.31 Aligned_cols=154 Identities=7% Similarity=-0.062 Sum_probs=124.8
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+...+.....+...|+|+.|...|++|++..+..+. +.. ......+.+.|.++..+|++++|+.+++|++++..
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-----~~H-p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-----DTN-LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-----TTS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344556666778899999999999999998764331 111 12356777789999999999999999999999876
Q ss_pred c-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 212 G-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 212 ~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
. .+..+..++..++|+|..+..+|+ |++|..+|++|+++.++..+..+ +..+.++.+|+.++.+++.
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~---~~eA~~~~~~Al~i~~~~lG~~H---------p~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWHAGH---IEVGHGMICKAYAILLVTHGPSH---------PITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTTS---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHHHHHHH
Confidence 5 777788899999999999999999 99999999999999887544332 1234467889999999999
Q ss_pred HHHHHHHHHHHHc
Q 004720 291 YESVIKCVRVLRE 303 (733)
Q Consensus 291 ~ekAl~~l~~a~~ 303 (733)
|++|...|.++++
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888876
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.3e-08 Score=92.03 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=107.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH-H
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI-Y 524 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki-~ 524 (733)
+..++..|+|++|+++|+.++...|.+ ..++..+|.+|...|++++|+++++++++++| ++...+.+..+ +
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLY 89 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344578899999999999999987754 35789999999999999999999999999999 88888889999 8
Q ss_pred HhcCCH--HHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 525 LQKNDQ--EGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 525 l~~gd~--e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
...|++ ++|+..++.+....+.++..+...+......|+.+.|+..++..++..+.+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 899998 999999999999888788877777788888999999999999999854443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-07 Score=106.56 Aligned_cols=130 Identities=12% Similarity=-0.021 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|++.|+.++...|.+ ...+.++|.+|..+|++++|.++++++++++| ++...+.+.
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3458999999999999999999999987744 46789999999999999999999999999999 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhhc
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC---QALSVAVAALSNLLNFYT 579 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~---~~~~~a~~aL~~Ll~~~~ 579 (733)
.++...|++++|++++++.....+.+++.+..-+...... |+.+.|...++..++...
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998877787666666777777 899999999988888443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=83.46 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-------h
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-------I 514 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-------~ 514 (733)
+...|..++..|+|++|+.+|+.++...|.+ ..++.++|.+|...|++++|.++++++++++| + +
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 3458999999999999999999999987644 46789999999999999999999999999988 6 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL 551 (733)
...+.+..++...|++++|+++++.+....+ +++..
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 115 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL 115 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHH
Confidence 7888899999999999999999999998766 56533
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-07 Score=98.04 Aligned_cols=165 Identities=10% Similarity=0.027 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-hHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN-IASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~-~~t~~~~~ 521 (733)
++..|..+...|++++|+..|+.++...|.+ ...+.+++.+|+..|++++|++.++++.+.+|+ ....+...
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 4468999999999999999999999998855 357899999999999999999999999999994 44445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQ 601 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~ 601 (733)
..+...++.++|++.+++.....+.+++....-+......|+.+.|+..|..++...+.. . -..+...+..+ ..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~-~~~a~~~l~~~-~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----A-DGQTRXTFQEI-LA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----G-GGHHHHHHHHH-HH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----c-cchHHHHHHHH-HH
Confidence 557778888999999999999888888877777788889999999999999999943221 1 11222223333 33
Q ss_pred hcCChhHHHHHHHHHHHHh
Q 004720 602 ETGNESEVLKYMKRAHART 620 (733)
Q Consensus 602 ~~~~~~~~l~~~~~A~~~l 620 (733)
..|..++.+..|++++..+
T Consensus 267 ~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 267 ALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp HHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHHHh
Confidence 4466778888888887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.9e-08 Score=106.14 Aligned_cols=296 Identities=10% Similarity=0.002 Sum_probs=121.1
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.-...|+.+++.|++..|+.+|.++-+.. .+ ..-..++...|++++|+.+++++.+..+.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~D~~--~y-----------------~~V~~~ae~~g~~EeAi~yl~~ark~~~~- 93 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKADDPS--SY-----------------MEVVQAANTSGNWEELVKYLQMARKKARE- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCHH--HH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHhCcc-
Confidence 33456777777777777777776542211 11 11122444577777777777777653221
Q ss_pred chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
+ .+...++.++.+.|+ ++++..+++ . | . ...|..+|..+...|.|++
T Consensus 94 ~-------~i~~~Li~~Y~Klg~---l~e~e~f~~-------~-p-------n--------~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 94 S-------YVETELIFALAKTNR---LAELEEFIN-------G-P-------N--------NAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ----------------------C---HHHHTTTTT-------C-C-------------------------------CTTT
T ss_pred c-------hhHHHHHHHHHHhCC---HHHHHHHHc-------C-C-------c--------HHHHHHHHHHHHHcCCHHH
Confidence 1 234455555556666 555553332 1 1 0 0167788888888888888
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
|..+|+.+. .+.-.+.++.++|++++|++.++++- ....|..........+. +.|..+..
T Consensus 141 A~~~Y~~a~------------n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l-- 201 (449)
T 1b89_A 141 AKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGL-- 201 (449)
T ss_dssp HHHHHHHTT------------CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHTTCHHHHHHTTT--
T ss_pred HHHHHHHhh------------hHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHcCcHHHHHHHHH--
Confidence 888887552 23566788888888888888887661 23334333333333332 11111000
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
.+ ...|++ ++.....+.+
T Consensus 202 --------------------~L---~~~ad~---------------------------------------l~~lv~~Yek 219 (449)
T 1b89_A 202 --------------------HI---VVHADE---------------------------------------LEELINYYQD 219 (449)
T ss_dssp --------------------TT---TTCHHH---------------------------------------HHHHHHHHHH
T ss_pred --------------------HH---HhCHhh---------------------------------------HHHHHHHHHH
Confidence 11 011100 1124566789
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCC------ChHHHHHHHHHH
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--SLIDRAQEYITEAEKLEP------NIASAFLKFKIY 524 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--~~~~~A~e~~~~A~~ldp------~~~t~~~~~ki~ 524 (733)
.|+|++|+.+++.+|...+... -++..++.+|.+- +++.+.++.|.....+.| +.....-...+|
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~-------~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHM-------GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCH-------HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886543 3566777776665 466666666654444433 233445677888
Q ss_pred HhcCCHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 525 LQKNDQEGAINQILAMTICLD--FTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~--~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.+-+++|.|+. +|..-++ ++.+.+.= ...+-.|.+..-+|+...++
T Consensus 293 ~~~~e~d~A~~---tm~~h~~~a~~~~~f~~---~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNHPTDAWKEGQFKD---IITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp HHTTCHHHHHH---HHHHSTTTTCCHHHHHH---HHHHCSSTHHHHHHHHHHHH
T ss_pred HhhchHHHHHH---HHHhCChhhhhhHHHHH---HHhchhHHHHHHHHHHHHHh
Confidence 99999999986 5566542 34442221 12366677777777776665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.9e-08 Score=109.63 Aligned_cols=146 Identities=8% Similarity=-0.053 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
-+...+..+..+|++++|+.++++++.+... .++.+..++..+.++|..+..+|+ |++|..++++++++.++..+.
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA---YEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHcCC
Confidence 3445577788999999999999999998765 666678899999999999999999 999999999999997764333
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH---HHHHHHHHhcCChHHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP---VLAMKAWLGLGRYNEAELEL 336 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~---~lk~~il~~~g~~deAi~~l 336 (733)
. .+..+..+.+||.+|..+|+|++|+.+++.+.++.. ..++.||.+. -+...++...+.+.+|+..+
T Consensus 388 ~---------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 388 N---------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp T---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223567899999999999999999999988888655 5689999977 34445666667777777766
Q ss_pred HHh
Q 004720 337 RGM 339 (733)
Q Consensus 337 ~~~ 339 (733)
+.+
T Consensus 459 ~~~ 461 (490)
T 3n71_A 459 HKM 461 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=98.28 Aligned_cols=162 Identities=15% Similarity=-0.019 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+..+|..+...|+++.|+..|++++.+.|..+. +++++|..+...|+ +++|+.+|+++... .|..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-------a~~~la~~~~~~g~---~~~A~~~l~~~~~~---~p~~ 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE-------IGLLLAETLIALNR---SEDAEAVLXTIPLQ---DQDT 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHHTTC---HHHHHHHHTTSCGG---GCSH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh-------HHHHHHHHHHHCCC---HHHHHHHHHhCchh---hcch
Confidence 45567788999999999999999999999998764 58889999999999 99999999988765 3310
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
.......+..+...+.++.|+..++.+... .+.++...+..+.++...|++++|+..+...+
T Consensus 185 --------------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 185 --------------RYQGLVAQIELLXQAADTPEIQQLQQQVAE----NPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp --------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhhcccCccHHHHHHHHhc----CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 012333455566777888899999888876 46788888999999999999999999999999
Q ss_pred hccCCc--hHHHHhHHHHHHHhch-hhhHHHHHHHH
Q 004720 341 EIKGIP--ECIWVSAVEAYFQAAG-TAGAETAKGVF 373 (733)
Q Consensus 341 ~~~~~~--~~~~ls~~~ly~~~~~-~~a~~~lk~~l 373 (733)
...+.. ...+.+.+.+|...++ +.+...+++.+
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 655544 5667778888877665 56666666544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.8e-08 Score=83.03 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---hHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN---IASAFLKF 521 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~---~~t~~~~~ 521 (733)
..|..++..|+|++|+.+|+.++...|.+ ..++.++|.+|..+|++++|+++++++++++|. +...+.+.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEE-------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 47999999999999999999999987754 357899999999999999999999999999985 66778899
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhccCCC
Q 004720 522 KIYLQK-NDQEGAINQILAMTICLDFT 547 (733)
Q Consensus 522 ki~l~~-gd~e~Al~~l~~~~~~~~~~ 547 (733)
.++... |++++|+++++.+....+.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999 99999999999998876543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-07 Score=88.37 Aligned_cols=169 Identities=7% Similarity=-0.165 Sum_probs=122.6
Q ss_pred HhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHH
Q 004720 142 WHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLA 221 (733)
Q Consensus 142 ~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La 221 (733)
.+..|+++.|...++.... . +. .....+...+.+++..|+++.|+.++.++..+...... ....+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~---------~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 66 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-H---------PA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEH 66 (203)
T ss_dssp -----CHHHHHHHHHHHHT-S---------TT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHH
T ss_pred ccccccHHHHHHHHHHhcC-C---------hH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHH
Confidence 3567888888774432211 0 11 01356667788999999999999999999998765332 34577
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
.+++++|..+...|+ +++|..++++++++.+..+.+ ......++.++|.+|...|++++|+.+++.+
T Consensus 67 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 67 RALHQVGMVERMAGN---WDAARRCFLEERELLASLPED----------PLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCcc----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 889999999999999 999999999999997753211 1134568999999999999999999998887
Q ss_pred HccCCCCCCCCCc----HHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 302 REGSFDGGDHHAS----LPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 302 ~~~~~~~~~~~p~----~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
..... ...+|. ++...+.++...|++++|+..+...+
T Consensus 134 l~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 134 LVYAQ--QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH--hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 75321 111222 23678889999999999999987665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=96.60 Aligned_cols=207 Identities=6% Similarity=0.008 Sum_probs=151.4
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHH-------hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc-
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF-------AKSALSKNETNSLNDALKLMNEALELCEKGLGEART- 263 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~-------G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~- 263 (733)
.-++...|..+|.++..++|..++. ...+ |..+..... +.+++.++++++++ .|.....
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Da-------w~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l---~p~~l~a~ 84 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDA-------WIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQI---SMSTLNAR 84 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTC---CGGGGCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHH-------HHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcC---Chhhhhhh
Confidence 6899999999999999999987754 5555 566666666 88899999999997 4433221
Q ss_pred -c-hh------hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHH
Q 004720 264 -R-EE------TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 264 -~-~~------~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~ 335 (733)
. .+ ++ -..+..+...++.++...|+|++|.+.++.+... ++.++ ..|..+.++++.+++++|+..
T Consensus 85 ~~~~g~y~~~~~~--v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 85 IAIGGLYGDITYP--VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp EECCTTTCCCEEE--CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred hccCCcccccccc--cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 1 11 00 0123346666799999999999999999877653 34555 779999999999999999999
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+...+..++ |.. .
T Consensus 158 l~~a~~~~d--------------------------------------------------------~~~-----~------ 170 (282)
T 4f3v_A 158 VKSAGKWPD--------------------------------------------------------KFL-----A------ 170 (282)
T ss_dssp HTTGGGCSC--------------------------------------------------------HHH-----H------
T ss_pred HHHhhccCC--------------------------------------------------------ccc-----H------
Confidence 764432110 000 0
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
+.+..+.|..+...|++++|+.||+.++.- +.++ .-.....++++.|+.++|
T Consensus 171 ------------------------~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P---~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 171 ------------------------GAAGVAHGVAAANLALFTEAERRLTEANDS-PAGE---ACARAIAWYLAMARRSQG 222 (282)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTT---TTHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCc---cccHHHHHHHHHHHHHcC
Confidence 001123788899999999999999999742 1101 125568899999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 004720 496 LIDRAQEYITEAEKLEPN 513 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp~ 513 (733)
+.++|.+.++++...+|+
T Consensus 223 r~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 999999999999999995
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.6e-07 Score=83.72 Aligned_cols=113 Identities=11% Similarity=-0.118 Sum_probs=96.8
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
.|+.++...| +....++++|.++...|++++|++.|+++++.+| ++...+.+..++...|++++|+.++++.
T Consensus 6 ~l~~al~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 6 TLAMLRGLSE-------DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp ---CCTTCCH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHcCCH-------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555543 4567789999999999999999999999999999 8999999999999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 541 TICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 541 ~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
....+.+++.+...+......|+.+.|+..++..++..+.+
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99988888877766778888999999999999999865544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-07 Score=80.49 Aligned_cols=119 Identities=10% Similarity=-0.068 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+...+..+...|+++.|+..++++..+.|..+ .+++++|..+...|+ +++|+.++++++++ .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~ 78 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA-------VYFCNRAAAYSKLGN---YAGAVQDCERAICI---DPA 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHhhc---hHHHHHHHHHHHhc---Ccc
Confidence 35666778889999999999999999999887654 357888999999999 99999999999998 432
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCCh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRY 329 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~ 329 (733)
+ ..++..+|.+|...|++++|+.+++.+... .+.++...+..+.++...|++
T Consensus 79 ~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 Y--------------SKAYGRMGLALSSLNKHVEAVAYYKKALEL----DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHTTC
T ss_pred C--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHhcC
Confidence 1 126788999999999999999999988876 345667778888888877765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.4e-07 Score=87.30 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH-HHhCCCH--HHHHHHHHHHHhhCC-ChHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC-YLGLSLI--DRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c-yl~l~~~--~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
++..|..++..|+|++|+++|+.++...|.+ ..++.+++.+ |...|++ ++|+++++++++.+| ++...+
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 3458999999999999999999999987754 3578999999 9999999 999999999999999 899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.+..++...|++++|+..++.+....+.+++.
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999999887766553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=87.69 Aligned_cols=89 Identities=7% Similarity=0.051 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C------hH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N------IA 515 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------~~ 515 (733)
+.+.|..++..|+|++|+++|+.++...|.+ ..++.++|.||..+|++++|+++++++++++| + ..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQN-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3458999999999999999999999987754 46789999999999999999999999999999 6 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
..+.+..++...|+++.|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 77778888888887777766553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=98.45 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|++.|+.++...|.+ +.++.++|.||.++|++++|++++++|++++| ++...+.++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3458999999999999999999999987744 46899999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.++...|++++|+..++......+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999887754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-07 Score=81.13 Aligned_cols=117 Identities=11% Similarity=-0.068 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+..++..+...|+++.|+.+++++..+.|..+ .+++++|..+...|+ +++|+.+|++++++ .+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~---~~~A~~~~~~a~~~---~~~ 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-------KLYSNRAACYTKLLE---FQLALKDCEECIQL---EPT 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH-------HHHHHHHHHHTTTTC---HHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHhcc---HHHHHHHHHHHHHh---CCC
Confidence 34556678888899999999999999998877654 457888998889999 99999999999987 432
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG 327 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g 327 (733)
+ ..++..+|.+|...|++++|+.+++.+... .+.++...+..+.++...|
T Consensus 83 ~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 F--------------IKGYTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CGGGTHHHHHHHHHHHHHT
T ss_pred c--------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhc
Confidence 1 237788899999999999999999888775 3455666666676666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=106.74 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|..+++.|+|++|++.|+.++.+.|.+ +.++.++|.||.++|++++|++++++|++++| ++...+.+..+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 47888999999999999999999987643 57899999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHE--AVACQALSVAVAALS 572 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~--a~~~~~~~~a~~aL~ 572 (733)
+...|++++|++++++..+..+.+++....-... ..+.|+.+.|+..++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999877666543332222 444556666666555
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=78.60 Aligned_cols=100 Identities=15% Similarity=-0.033 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHE 557 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~ 557 (733)
..+..++++|.++.+.|++++|++.|+++++++| ++...+.+..++...|++++|+.++++.....+.++..+..-+..
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4678899999999999999999999999999999 899999999999999999999999999999988888877766778
Q ss_pred HHHcCCHHHHHHHHHHHHhhh
Q 004720 558 AVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 558 a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
....|+.+.|+..++..++..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888999999999999998854
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.6e-07 Score=95.18 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=84.7
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
+..+++.|..++..|+ |++|+..|++++.+ .|.+ ...+.++|.+|...|+|++|+..++.
T Consensus 4 a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRK---YPEAAACYGRAITR---NPLV--------------AVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCcc--------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3568899999999999 99999999999998 5422 23788999999999999999999999
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+.+. .+.++.+++..+.++...|++++|+..+...+.
T Consensus 64 al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 64 ALEL----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9886 466778889999999999999999999987763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.3e-07 Score=87.43 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchh---------HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHH
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEH---------YKSLANQYLTFAKSALSKNETNSLNDALKLMNEA 250 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~---------~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~A 250 (733)
...+...+..+...|++++|+..|.+++.+.|..+.. ......+++++|.+++..|+ +++|+.+++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 3456667889999999999999999999998876521 11234678899999999999 99999999999
Q ss_pred HHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChH
Q 004720 251 LELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYN 330 (733)
Q Consensus 251 lel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~d 330 (733)
+++ ++.+ ..++..+|.+|...|+|++|+.+++.+... .+.++.+......++...++.+
T Consensus 115 l~~---~p~~--------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 115 LKI---DKNN--------------VKALYKLGVANMYFGFLEEAKENLYKAASL----NPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHH---STTC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHH
T ss_pred HHh---Cccc--------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHHHHH
Confidence 998 4422 237888999999999999999999999886 3566777777778887777777
Q ss_pred HHHHH
Q 004720 331 EAELE 335 (733)
Q Consensus 331 eAi~~ 335 (733)
++...
T Consensus 174 ~~~~~ 178 (198)
T 2fbn_A 174 KKDKL 178 (198)
T ss_dssp C----
T ss_pred HHHHH
Confidence 66644
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.7e-06 Score=87.06 Aligned_cols=235 Identities=9% Similarity=-0.048 Sum_probs=161.4
Q ss_pred HHHHHhccCc-HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC--ChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 281 ISAIHLQKGE-YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG--RYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 281 La~~yl~~~~-~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g--~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
...+....+. .++|+.+.+.+..+ ++.+..+++.+..++...| ++++++..+..++...|..-.+|-.=..++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3444455554 46899999999987 5788888999999999999 999999999888854444444431111111
Q ss_pred HHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhh
Q 004720 358 FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERI 437 (733)
Q Consensus 358 ~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~ 437 (733)
..++ ..++. ......++.++++++ +.+|.+..+|..
T Consensus 114 ------------~~~~-~~l~~-~~~~~~EL~~~~~~l--~~~pkny~aW~~---------------------------- 149 (306)
T 3dra_A 114 ------------GQIM-ELNNN-DFDPYREFDILEAML--SSDPKNHHVWSY---------------------------- 149 (306)
T ss_dssp ------------HHHH-HHTTT-CCCTHHHHHHHHHHH--HHCTTCHHHHHH----------------------------
T ss_pred ------------HHHH-Hhccc-cCCHHHHHHHHHHHH--HhCCCCHHHHHH----------------------------
Confidence 0000 11110 011245555666666 455545444422
Q ss_pred HHHHHHHHHHHHHHhcCCHH--HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHh
Q 004720 438 AMHAVLWNCASILFRSKDYE--ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL------IDRAQEYITEAEK 509 (733)
Q Consensus 438 ~~~~llW~~g~~~~k~~~y~--~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~------~~~A~e~~~~A~~ 509 (733)
.+....+.|+|+ ++++++..+++.+|.|. .+..+++.+..+++. ++++.+++++++.
T Consensus 150 --------R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~-------sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 150 --------RKWLVDTFDLHNDAKELSFVDKVIDTDLKNN-------SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp --------HHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhcccChHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 455555667788 99999999999988774 356777777888887 9999999999999
Q ss_pred hCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 510 LEP-NIASAFLKFKIYLQKNDQEG-AINQILAMTICL---DFTTDFLSLAAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 510 ldp-~~~t~~~~~ki~l~~gd~e~-Al~~l~~~~~~~---~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+| +...-+++..++...|.... ..+..+++.... ..++..|..-+....+.|+.+.|+++++.|.+++
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 999 88888888888877777544 444555555543 3355666665666667899999999999988744
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-06 Score=80.18 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+..+..++.++.+|...|+|++|+++|+++++++| ++...+.+..++...|++++|+.++++.....+.++..+..-+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 57789999999999999999999999999999999 89999999999999999999999999999998888887777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.....|+.+.|+..++..++....+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCc
Confidence 8889999999999999999965444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.2e-07 Score=97.09 Aligned_cols=143 Identities=10% Similarity=0.019 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCCh---HHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDS---DERKLLLDINIARSRTAWEVLEQNLAITL 202 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~---~e~~~~l~~l~~rA~~a~~~g~~~~A~~~ 202 (733)
+.....+......|+.+++.|+|+.|+.+|++|+++.+....... .+ ........++..+|.++..+|++++|+.+
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE-DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccC-hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 455667788889999999999999999999999997664210000 00 01112346788889999999999999999
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHH
Q 004720 203 LNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFIS 282 (733)
Q Consensus 203 ~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La 282 (733)
+++++.+.|..++ +++++|.++...++ +++|+.+|++|+++ .|.+. .++..++
T Consensus 296 ~~~al~~~p~~~~-------a~~~lg~~~~~~g~---~~eA~~~l~~Al~l---~P~~~--------------~~~~~l~ 348 (370)
T 1ihg_A 296 CLEALEIDPSNTK-------ALYRRAQGWQGLKE---YDQALADLKKAQEI---APEDK--------------AIQAELL 348 (370)
T ss_dssp HHHHHTTCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHH
T ss_pred HHHHHHhCchhHH-------HHHHHHHHHHHccC---HHHHHHHHHHHHHh---CCCCH--------------HHHHHHH
Confidence 9999999987654 58999999999999 99999999999999 54321 2566778
Q ss_pred HHHhccCcHHHHHH
Q 004720 283 AIHLQKGEYESVIK 296 (733)
Q Consensus 283 ~~yl~~~~~ekAl~ 296 (733)
.++...++++++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777666653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=75.18 Aligned_cols=109 Identities=12% Similarity=-0.075 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+...+..+...|+++.|+..++++..+.|..+. +++++|..+...|+ +++|+.++++++++ .+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 71 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV-------LYSNRSAAYAKKGD---YQKAYEDGCKTVDL---KPDW 71 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-------HHHHHHHHHHhhcc---HHHHHHHHHHHHHh---Cccc
Confidence 45566688888999999999999999988887653 57788888888999 99999999999988 4321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAM 320 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~ 320 (733)
..++..+|.+|...|++++|+.+++.+... .+.+|.......
T Consensus 72 --------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~ 113 (118)
T 1elw_A 72 --------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKH----EANNPQLKEGLQ 113 (118)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc----CCCCHHHHHHHH
Confidence 126788899999999999999999888875 344454444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-06 Score=87.12 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=139.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-------HHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA-------MKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-------~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
.+...+..| ..++++.|..++..+... .+..+..+.-+ +.++...+++.+++..+.+.+...|.....
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 444455566 478999999999999886 45667777666 678888888888888887776544433333
Q ss_pred HHhHHHHH--HHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004720 350 WVSAVEAY--FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF 427 (733)
Q Consensus 350 ~ls~~~ly--~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~ 427 (733)
.+++.-+| +..- -.++++ .....+..+......+...+.|
T Consensus 84 ~~~~~g~y~~~~~~------------------------------------v~~r~d--l~LayA~~L~~~g~y~eA~~~l 125 (282)
T 4f3v_A 84 RIAIGGLYGDITYP------------------------------------VTSPLA--ITMGFAACEAAQGNYADAMEAL 125 (282)
T ss_dssp EEECCTTTCCCEEE------------------------------------CSSHHH--HHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhccCCcccccccc------------------------------------cCCHhH--HHHHHHHHHHHCCCHHHHHHHH
Confidence 22200001 0000 000000 0011111122222222233333
Q ss_pred hcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 428 VGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 428 ~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
..-..... ... ..|..|..+++.|+|++|+..|+.+.... + +.....++++++.++..+|++++|+..|+++
T Consensus 126 ~~~~~~~p-~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d---~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 126 EAAPVAGS-EHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP--D---KFLAGAAGVAHGVAAANLALFTEAERRLTEA 197 (282)
T ss_dssp TSSCCTTC-HHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCC-chH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC--C---cccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 21111000 111 56789999999999999999999776532 1 1233568999999999999999999999999
Q ss_pred HhhC--C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 508 EKLE--P--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 508 ~~ld--p--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
..-. | .+...+....++.+.|+.++|...++.+....+.
T Consensus 198 ~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 198 NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7544 5 3457889999999999999999999999887553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-06 Score=74.46 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+...+.++...|+++.|+..+.++....|..+ .+++++|..+...|+ +++|+.+|++++++ .+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 76 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-------EAWYNLGNAYYKQGD---YDEAIEYYQKALEL---DPNN 76 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-------HHHHHHHHHHHHhCC---HHHHHHHHHHHHHh---CCcc
Confidence 3445567778888999999999999988877644 357778888888888 89999999988887 3311
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG 325 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~ 325 (733)
..++..++.+|...|++++|+.+++.+... .+.++...+..+.++..
T Consensus 77 --------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 77 --------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHh
Confidence 126778888888889999999888888775 34555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-05 Score=81.22 Aligned_cols=161 Identities=12% Similarity=-0.022 Sum_probs=113.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-------ChHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-------NIASAF 518 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-------~~~t~~ 518 (733)
.|.+++..|++++|++|+..++...|. .+...++..++.+|++.|+.+.|.+.++++.+.+| .+.+++
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~-----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEA-----EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCC-----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 688999999999999999999876552 24557889999999999999999999999999998 344555
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC--CC--CCchhHHH
Q 004720 519 LKFKIYLQKN--DQEGAINQILAMTICLDF--TTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS--GK--PMPTKEVV 590 (733)
Q Consensus 519 ~~~ki~l~~g--d~e~Al~~l~~~~~~~~~--~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~--~~--~~~~~~~~ 590 (733)
...-+.+..| ++++|...|+.+....+. ++.+|.- ..+..|+.+.|...|+.+.+.+.. .+ ..|. -+.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~-~~~ 256 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY-KPT 256 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS-HHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC-CHH
Confidence 5565566666 899999999998765542 2333333 456788999999999988775422 00 0022 245
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 004720 591 VLRTIVTILTQETGNESEVLKYMKRAHA 618 (733)
Q Consensus 591 ~lR~li~l~~~~~~~~~~~l~~~~~A~~ 618 (733)
.+..+|.+-... |+ +...++.++.+
T Consensus 257 ~LaN~i~l~~~l-gk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQ-GL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHT-TC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHh-Ch--HHHHHHHHHHH
Confidence 566676664322 22 33445555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=74.97 Aligned_cols=102 Identities=11% Similarity=-0.019 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF--TTDFLSLAA 555 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~--~~~lL~la~ 555 (733)
+.+..+..+|.+|...|++++|+++++++++++| +....+.+..++...|++++|++++++.....+. ++..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 4456788999999999999999999999999999 8888999999999999999999999999999887 788777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhhhcC
Q 004720 556 HEAVAC-QALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 556 ~~a~~~-~~~~~a~~aL~~Ll~~~~~ 580 (733)
...... |+.+.|+..++.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 778889 9999999999999985443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.4e-07 Score=78.92 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFL 519 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~ 519 (733)
..|..+|+.|+|+.|+.||+.|+...+.+.......+.++.++|.||.++|++++|..+++++++++| +......
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 48999999999999999999999755322100146789999999999999999999999999999999 7655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=71.76 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+.+|+.++...|.+ ..++.+++.+|...|++++|+++++++++++| ++...+.+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3458999999999999999999999887644 45789999999999999999999999999999 888888888
Q ss_pred HHHHhcC
Q 004720 522 KIYLQKN 528 (733)
Q Consensus 522 ki~l~~g 528 (733)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 8876544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-06 Score=75.30 Aligned_cols=106 Identities=20% Similarity=0.188 Sum_probs=91.1
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..++..|+++.|..+|+++++..+. . ..++...+.++...|+++.|+.++.++..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--------N------MTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------c------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3456678899999999999999999999986431 1 2456667889999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
|..+........+++++|..+...|+ +++|..+|++++++
T Consensus 69 ~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 69 RENREDYRQIAKAYARIGNSYFKEEK---YKDAIHFYNKSLAE 108 (131)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHh
Confidence 87655566668889999999999999 99999999999998
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.7e-07 Score=95.42 Aligned_cols=118 Identities=11% Similarity=-0.051 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHh-hccCCC--hHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLD-ISRISD--SDERKLLLDINIARSRTAWEVLEQNLAITL 202 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~-~~~~~~--~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~ 202 (733)
+.-.+.+......|+.+++.|+|+.|..+|++|+...+... ....+. +.........+.+++.++...|+++.|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33456778888999999999999999999999998765311 111000 000111123556667777777777777777
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 203 LNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 203 ~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+++++.+.|..++ +++++|..+...|+ +++|+.+|++++++
T Consensus 253 ~~~al~~~p~~~~-------a~~~lg~a~~~~g~---~~~A~~~l~~al~l 293 (338)
T 2if4_A 253 CNIVLTEEEKNPK-------ALFRRGKAKAELGQ---MDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHCTTCHH-------HHHHHHHHHHTTTC---HHHHHHHHHHTTC-
T ss_pred HHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 7777777766543 47777777777777 77777777777776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.1e-07 Score=80.46 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=69.7
Q ss_pred HccCHHHHHHHHHHHHhh---hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 192 EVLEQNLAITLLNRAKCL---LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l---~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
.+|++++|+..+++++.+ +|. ...+++++|..+...|+ +++|+.+|++++++ .|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-------~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~---~p~~-------- 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-------LAECYLGLGSTFRTLGE---YRKAEAVLANGVKQ---FPNH-------- 60 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-------HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-------HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCc--------
Confidence 478999999999999998 454 34578999999999999 99999999999998 5432
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
..++..+|.+|...|++++|+.+++.+...
T Consensus 61 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 61 ------QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 127888999999999999999999988875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-05 Score=70.97 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---hHHHHHHH
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI---ASAFLKFKIYLQKNDQEGAINQILAMTICLDFT---TDFLSLAA 555 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~---~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~---~~lL~la~ 555 (733)
.++++|.++...|++++|++.++++++.+| ++ ...+.+..++...|++++|+..++.+....+.+ ++.+...+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 468899999999999999999999999999 66 688899999999999999999999999887766 66666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 556 HEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 556 ~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
......|+.+.|+..++.+++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 7778899999999999999996543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=96.74 Aligned_cols=114 Identities=7% Similarity=-0.063 Sum_probs=96.8
Q ss_pred HHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTE 269 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~ 269 (733)
-..|++++|+.++++++.+... .++.+..++..+.++|..+..+|+ |++|..++++++++.++..+..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---~~eA~~~~~~aL~i~~~~lG~~-------- 377 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD---WEGALKYGQKIIKPYSKHYPVY-------- 377 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCSS--------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHcCCC--------
Confidence 3578999999999999998665 666678899999999999999999 9999999999999977754333
Q ss_pred hhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH
Q 004720 270 LKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP 316 (733)
Q Consensus 270 ~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~ 316 (733)
.+..+..+.+||.+|..+|+|++|+.+++.+.++.. ..++.||.+.
T Consensus 378 -Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 378 -SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred -ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 223566899999999999999999999998888665 5688899865
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-07 Score=102.50 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=100.6
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......|+.+++.|+|+.|..+|++|++..+. . ...+..+|.++..+|++++|+.++++++++.|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS--------N------AIYYGNRSLAYLRTECYGYALGDATRAIELDK 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--------c------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 344567899999999999999999999987432 1 25666779999999999999999999999988
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH--HhccC
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI--HLQKG 289 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~--yl~~~ 289 (733)
..+. .++++|..+...|+ +++|+.+|++++++ .|.+.. ++..++.+ +...|
T Consensus 72 ~~~~-------~~~~lg~~~~~~g~---~~eA~~~~~~al~~---~p~~~~--------------~~~~l~~~~~~~~~g 124 (477)
T 1wao_1 72 KYIK-------GYYRRAASNMALGK---FRAALRDYETVVKV---KPHDKD--------------AKMKYQECNKIVKQK 124 (477)
T ss_dssp TCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---STTCTT--------------HHHHHHHHHHHHHHH
T ss_pred CCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCHH--------------HHHHHHHHHHHHHHH
Confidence 7654 58899999999999 99999999999998 543321 45556666 88889
Q ss_pred cHHHHHHHHH
Q 004720 290 EYESVIKCVR 299 (733)
Q Consensus 290 ~~ekAl~~l~ 299 (733)
+|++|+.+++
T Consensus 125 ~~~~A~~~~~ 134 (477)
T 1wao_1 125 AFERAIAGDE 134 (477)
T ss_dssp HHCCC-----
T ss_pred HHHHHhcccc
Confidence 9999999988
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.5e-06 Score=73.82 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=93.4
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+..+..+..+|.+|...|++++|++.++++++++| ++...+.+..++...|++++|+.+++......+.++..+...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 35678899999999999999999999999999999 89999999999999999999999999999998888887777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
.....|+.+.|+..++..++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999999885444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.5e-07 Score=76.26 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAK-SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~ak-l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
+.|..+++.|+|++|+++|+.++...|.+ .. ++.++|.||..+|++++|+++++++++++| ++...+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---
Confidence 47899999999999999999999987754 34 899999999999999999999999999999 6655433
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 004720 523 IYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~ 543 (733)
+..++|+.++++....
T Consensus 75 -----~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 -----KMVMDILNFYNKDMYN 90 (99)
T ss_dssp -----HHHHHHHHHHCCTTHH
T ss_pred -----HHHHHHHHHHHHHhcc
Confidence 4566777777655544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=6.7e-06 Score=74.08 Aligned_cols=95 Identities=14% Similarity=-0.070 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC 561 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~ 561 (733)
-.+.+|.+++..|++++|++.++++++.+| ++...+.+..++...|++++|+.++++.....+.+++.+..-+......
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999 8999999999999999999999999999999888887666656677778
Q ss_pred CCHHHHHHHHHHHHhh
Q 004720 562 QALSVAVAALSNLLNF 577 (733)
Q Consensus 562 ~~~~~a~~aL~~Ll~~ 577 (733)
|+.+.|+..++..++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8999999999988874
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.3e-06 Score=92.86 Aligned_cols=122 Identities=9% Similarity=0.032 Sum_probs=101.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
+......+..+|++++|+.++++++.+... .++.+..++.++.++|..+..+|+ |++|..++++++++.++..+..
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~---~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL---LEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhHHHHcCCC
Confidence 334456677899999999999999987554 666677899999999999999999 9999999999999977643322
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP 316 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~ 316 (733)
.+..+..+.+||.+|..+|+|++|+.+++.+.++.. ..|+.||.+.
T Consensus 367 ---------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 367 ---------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred ---------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 233567899999999999999999999988888655 5688899865
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.20 E-value=8.6e-05 Score=78.38 Aligned_cols=91 Identities=8% Similarity=-0.154 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----------CC-ChHHHHHHHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL----------EP-NIASAFLKFK 522 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l----------dp-~~~t~~~~~k 522 (733)
++|++|...|+....-+|.. ....++.+ |++++|++++|.+.++..++. +| ++.+...+.-
T Consensus 192 ~~~q~A~~~f~El~~~~p~~-----~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTFPTW-----KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp STTTHHHHHHHHHHTTSCSH-----HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCc-----ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 48999999999877655531 11233444 899999999999999877776 47 7777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
++...|+ +|.+.+.++....+.+|-++.+.
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 7777787 78888888888888777655543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=89.62 Aligned_cols=118 Identities=10% Similarity=-0.018 Sum_probs=94.8
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG- 212 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~- 212 (733)
..+..++.--+.|+|+.|...|++|++..+.... +.. ......+.+.|.+|..+|++++|+.+++|++.+...
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg-----~~H-p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~ 373 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE-----DSN-VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH 373 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC-----TTS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC-----hhc-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 3444455445678999999999999998764331 111 123567777899999999999999999999998765
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.+..+..++..|+|+|..+..+|+ |++|..+|++|+++.++..+.
T Consensus 374 lG~~Hp~~a~~l~nLa~~~~~qg~---~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 374 YPVYSLNVASMWLKLGRLYMGLEN---KAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCCChHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHcCC
Confidence 666778899999999999999999 999999999999998875443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00025 Score=75.70 Aligned_cols=258 Identities=9% Similarity=-0.028 Sum_probs=155.3
Q ss_pred HHHHHHccCHH-HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCC-------CHHHHHHHHHHHHHHHhcCC
Q 004720 187 SRTAWEVLEQN-LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETN-------SLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 187 A~~a~~~g~~~-~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~-------~~e~A~~~l~~Alel~~~~~ 258 (733)
.......|++. +|+..+++++.++|.+... .+..|..+...+... .+++++.++.+++.. +|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~yta-------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~---~P 105 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATL-------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NP 105 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHH-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHH-------HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---CC
Confidence 34445678887 8999999999999986642 334444443333200 056777788887776 44
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccC--cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCC-hHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKG--EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGR-YNEAELE 335 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~--~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~-~deAi~~ 335 (733)
.+ ..+|...+.+....+ .+++++.+++.+.+. .+.+..++.-+.-++...|. +++++..
T Consensus 106 Kn--------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 106 KS--------------YGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp TC--------------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CC--------------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 22 237777788877766 599999999999986 45667788889999999998 5899999
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCch-HHHHHHHHHHhhcCCCCCcchHHH-HHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS-AKAAVRMAHRVAGDEGDGVSEAAV-KLRAKA 413 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~-~~~a~~~l~~~l~~~~sp~~~~~l-~~ka~~ 413 (733)
+..++...+.....|-.-..++.......+.. -.++.... ...++..+.+.+ ...|++.++| +.+..+
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~--------~~~~~~~~~~~eEle~~~~ai--~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG--------PQGRLPENVLLKELELVQNAF--FTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC--------------CCCHHHHHHHHHHHHHHH--HHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccc--------cccccchHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH
Confidence 98888544444444433222222110000000 00000001 345666666766 5778887777 444333
Q ss_pred HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh
Q 004720 414 VAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG 493 (733)
Q Consensus 414 l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~ 493 (733)
.... |.... + .-..+.+++++++|...+++.|.+. +...+.+....+. -.
T Consensus 238 ~~~~-----------~~~~~-------------~--~~~~~~l~~el~~~~elle~~pd~~--w~l~~~~~~~~~~--~~ 287 (331)
T 3dss_A 238 GAGS-----------GRCEL-------------S--VEKSTVLQSELESCKELQELEPENK--WCLLTIILLMRAL--DP 287 (331)
T ss_dssp HSSS-----------CGGGC-------------C--HHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHH--CT
T ss_pred Hhcc-----------Ccccc-------------c--hHHHHHHHHHHHHHHHHHhhCcccc--hHHHHHHHHHHhh--cc
Confidence 2111 00000 0 0123457899999999999988652 2222222111111 14
Q ss_pred CCCHHHHHHHHHHHHhhCC
Q 004720 494 LSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 494 l~~~~~A~e~~~~A~~ldp 512 (733)
.+..++..+.+.+..++||
T Consensus 288 ~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 288 LLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp TTTHHHHHHHHHHHHHHCG
T ss_pred cccHHHHHHHHHHHHHhCc
Confidence 6788889999999999999
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-06 Score=82.16 Aligned_cols=91 Identities=18% Similarity=0.055 Sum_probs=80.0
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLI----------DRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~----------~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
+.+.|++|++.|+.++...|.+ +..+.+++.|+..++++ ++|+..|++|++++| +..+.+.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L 86 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 5567999999999999998855 45789999999999875 599999999999999 88999999
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHHHhccCCChH
Q 004720 521 FKIYLQKN-----------DQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 521 ~ki~l~~g-----------d~e~Al~~l~~~~~~~~~~~~ 549 (733)
..+|...| ++++|+++|++.....+.++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 99998874 899999999999999776554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-05 Score=69.75 Aligned_cols=101 Identities=13% Similarity=-0.072 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
+..+..++.++.+|...|++++|++.++++++++| + ....+.+..++...|++++|+++++......+.+++.+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 46788899999999999999999999999999999 4 6778889999999999999999999999988778887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 554 AAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 554 a~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+......|+.+.|+..++..++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7788888999999999999999854
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.18 E-value=5e-06 Score=73.32 Aligned_cols=81 Identities=16% Similarity=-0.001 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
+.|++.|+.++...|.+ ..++.++|.+|...|++++|+++++++++++| ++...+.+..++...|++++|+.
T Consensus 2 ~~a~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CCHHHHHHHHHTTTCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 35889999999987754 35789999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHhcc
Q 004720 536 QILAMTICL 544 (733)
Q Consensus 536 ~l~~~~~~~ 544 (733)
.+++.....
T Consensus 75 ~~~~al~~~ 83 (115)
T 2kat_A 75 AWESGLAAA 83 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00021 Score=76.74 Aligned_cols=220 Identities=9% Similarity=0.026 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC-cHHHHHHHHHHHHccCCCCCCCCCcHHHH
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG-EYESVIKCVRVLREGSFDGGDHHASLPVL 318 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~-~~ekAl~~l~~a~~~~~~~~~~~p~~~~l 318 (733)
.++|+.++++++.+ +|.+ ..+|...+.+....+ .+++++.+++.+... ++.++.++..
T Consensus 70 se~AL~lt~~~L~~---nP~~--------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~h 128 (349)
T 3q7a_A 70 SERALELTEIIVRM---NPAH--------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHH 128 (349)
T ss_dssp SHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHH
T ss_pred CHHHHHHHHHHHHh---Cchh--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHH
Confidence 68899999999999 6533 237888888888788 699999999999886 4677888899
Q ss_pred HHHHHHhc-C-ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCc---h-HHHHHHHHH
Q 004720 319 AMKAWLGL-G-RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHV---S-AKAAVRMAH 392 (733)
Q Consensus 319 k~~il~~~-g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~---~-~~~a~~~l~ 392 (733)
+..++... + ++++++..+..++...+..-..|-.-.-++ ..+++.++ . -..++..++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl-----------------~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLY-----------------SHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHH-----------------HHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------HHhccccccchhhHHHHHHHHH
Confidence 99999988 8 899999998888854444433432111111 11111110 0 123444444
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC-------HHHHHHHHHH
Q 004720 393 RVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD-------YEASAEMFEK 465 (733)
Q Consensus 393 ~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~-------y~~A~~~y~~ 465 (733)
+.+ +..|.+..+|.. .+....+.++ ++++++++..
T Consensus 192 k~I--~~dp~N~SAW~~------------------------------------R~~lL~~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 192 EML--RVDGRNNSAWGW------------------------------------RWYLRVSRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp HHH--HHCTTCHHHHHH------------------------------------HHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred HHH--HhCCCCHHHHHH------------------------------------HHHHHHhccccccchHHHHHHHHHHHH
Confidence 554 345555555533 3444444444 7999999999
Q ss_pred hhccCCCCchhhhhhHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHhhC------C-ChHHHH
Q 004720 466 SMLYLPFDVENRILRAKSFRVLCLCYLGLSL--------------------IDRAQEYITEAEKLE------P-NIASAF 518 (733)
Q Consensus 466 aL~~~~~~~~~~~~~akl~r~la~cyl~l~~--------------------~~~A~e~~~~A~~ld------p-~~~t~~ 518 (733)
++...|.|+. +...+...+.+.|. +....+.+.+..... + +++...
T Consensus 234 aI~~~P~n~S-------aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 234 SIHLIPHNVS-------AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHCTTCHH-------HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHhCCCCHH-------HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 9999997753 34444444544443 344555555443332 3 677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
.++.+|...|+.++|+++++.+..
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 888899999999999999988864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0003 Score=75.03 Aligned_cols=195 Identities=11% Similarity=0.022 Sum_probs=124.4
Q ss_pred HhccCcHH-HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCC----------hHHHHHHHHHhhhccCCchHHHHhH
Q 004720 285 HLQKGEYE-SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGR----------YNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 285 yl~~~~~e-kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~----------~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
....|+|+ +|+.+.+.+..+ ++.+..+++.+..++...+. +++++..+..++...|..-.+|..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h- 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH- 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-
T ss_pred HHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH-
Confidence 34556654 899999999987 56777888899998887765 456666666666433333333311
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
++.++..+++ +....++.++++++ +.+|.+..+|..
T Consensus 114 ----------------R~wlL~~l~~--~~~~~EL~~~~k~l--~~dprNy~AW~~------------------------ 149 (331)
T 3dss_A 114 ----------------RCWLLSRLPE--PNWARELELCARFL--EADERNFHCWDY------------------------ 149 (331)
T ss_dssp ----------------HHHHHHHCSS--CCHHHHHHHHHHHH--HHCTTCHHHHHH------------------------
T ss_pred ----------------HHHHHhccCc--ccHHHHHHHHHHHH--HhCCCCHHHHHH------------------------
Confidence 1111112221 11234455555555 345544444422
Q ss_pred HHhhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--------------CCHH
Q 004720 434 KERIAMHAVLWNCASILFRSKD-YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--------------SLID 498 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~-y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--------------~~~~ 498 (733)
.+......|. ++++++++..++..+|.|.. ...+++....++ +.++
T Consensus 150 ------------R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S-------AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~ 210 (331)
T 3dss_A 150 ------------RRFVAAQAAVAPAEELAFTDSLITRNFSNYS-------SWHYRSCLLPQLHPQPDSGPQGRLPENVLL 210 (331)
T ss_dssp ------------HHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH-------HHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred ------------HHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHhhhccccccccccchHHHH
Confidence 4455555666 69999999999999987754 344444444444 5689
Q ss_pred HHHHHHHHHHhhCC-ChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhccCCC
Q 004720 499 RAQEYITEAEKLEP-NIASAFLKFKIYLQK-----------NDQEGAINQILAMTICLDFT 547 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~-----------gd~e~Al~~l~~~~~~~~~~ 547 (733)
++.+++.+++..+| +...-++.--+.... +..++++++++.+....+.+
T Consensus 211 eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 211 KELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 99999999999999 777775443333333 34689999999998886543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=89.52 Aligned_cols=139 Identities=10% Similarity=-0.047 Sum_probs=104.3
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......-..+.+.|+|+.|...|+++++..+... ++.. ...+..+.+.+.++..+|++++|+.++.|++.+.
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-----g~~h-~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~ 359 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-----PDIN-IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY 359 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-----CTTS-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-----Cccc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence 334444445556678899999999998887543211 1111 2235677777999999999999999999999987
Q ss_pred hc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 211 FG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 211 ~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
.. .+..+..++..++|+|..+..+|+ +++|...|++|+++.+...+..+ +....++.+|+.+..+
T Consensus 360 ~~~lg~~Hp~~a~~l~nLa~~~~~~g~---~~eA~~~~~~Al~i~~~~lG~~H---------p~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 360 RIFFPGSHPVRGVQVMKVGKLQLHQGM---FPQAMKNLRLAFDIMRVTHGREH---------SLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTTS---------HHHHHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHHHH
Confidence 65 777788899999999999999999 99999999999999887544332 2233466777777654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-05 Score=64.44 Aligned_cols=75 Identities=20% Similarity=0.133 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
+..+..+++++.+|...|++++|++.++++++++| ++...+.+..++...|++++|++.++......+.+++...
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 35678899999999999999999999999999999 8889999999999999999999999999988776666443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.09 E-value=9.1e-06 Score=70.40 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+++.|..+++.|+|++|+++|+.++...|.+ ...+.++|.||..+|++++|++.++++++++|
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34458888889999999999999988887754 34788889999999999999999988888765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00042 Score=74.40 Aligned_cols=236 Identities=9% Similarity=0.016 Sum_probs=151.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC-ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHh
Q 004720 282 SAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG-RYNEAELELRGMVEIKGIPECIWVSAVEAYFQA 360 (733)
Q Consensus 282 a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~ 360 (733)
..+....+..++|+++++.+..+ ++.+..++..+..++...| .+++++..+..++...+..-.+|-.
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h-------- 128 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH-------- 128 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH--------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH--------
Confidence 33333444567899999999987 5678888899999999999 5999999998888555544444421
Q ss_pred chhhhHHHHHHHHHhhh-ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHH
Q 004720 361 AGTAGAETAKGVFLGLL-GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAM 439 (733)
Q Consensus 361 ~~~~a~~~lk~~l~~ll-~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~ 439 (733)
++.++..+ + .. ...++.++++++ +.+|.+..+|..|.-++..+...+.
T Consensus 129 ---------R~wlL~~l~~-~~--~~~EL~~~~k~L--~~dpkNy~AW~~R~wvl~~l~~~~~----------------- 177 (349)
T 3q7a_A 129 ---------RLLLLDRISP-QD--PVSEIEYIHGSL--LPDPKNYHTWAYLHWLYSHFSTLGR----------------- 177 (349)
T ss_dssp ---------HHHHHHHHCC-SC--CHHHHHHHHHHT--SSCTTCHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred ---------HHHHHHHhcC-CC--hHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhccccc-----------------
Confidence 11111111 2 01 146667777887 6788787777555444433211000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHhhCC
Q 004720 440 HAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL-------IDRAQEYITEAEKLEP 512 (733)
Q Consensus 440 ~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~-------~~~A~e~~~~A~~ldp 512 (733)
.....+.++++++...+..+|.|. .+..+++.+..+++. ++++++++++++.++|
T Consensus 178 -----------~~~~~~~eELe~~~k~I~~dp~N~-------SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 178 -----------ISEAQWGSELDWCNEMLRVDGRNN-------SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred -----------cchhhHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence 001123589999999999988764 457888888888886 8999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCH----------------HHHHHHHHHHH-hcc---------CCChHHHHHHHHHHHHcCCHH
Q 004720 513 -NIASAFLKFKIYLQKNDQ----------------EGAINQILAMT-ICL---------DFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~----------------e~Al~~l~~~~-~~~---------~~~~~lL~la~~~a~~~~~~~ 565 (733)
+...-+++-.++...|.. +.....+..+. ... ..++-.|..-+....+.|+..
T Consensus 240 ~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 319 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD 319 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH
Confidence 777776666666655543 11111111111 111 124456666666667778888
Q ss_pred HHHHHHHHHHhhh
Q 004720 566 VAVAALSNLLNFY 578 (733)
Q Consensus 566 ~a~~aL~~Ll~~~ 578 (733)
.|.++++.|.+.+
T Consensus 320 ~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 320 DAAKVFEKLSSEY 332 (349)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 8888888887644
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.5e-05 Score=65.17 Aligned_cols=68 Identities=10% Similarity=-0.049 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 004720 480 RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT 547 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~ 547 (733)
.+..+.++|.+|...|++++|++.|+++++++| ++...+.+..++...|++++|++++++.....+.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467889999999999999999999999999999 89999999999999999999999999999887655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=67.97 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
|+.+.+++++|.+|...|++++|+++++++++++| ++...+.+..++...|++++|++.+++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46678899999999999999999999999999999 8999999999999999999999999887765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00017 Score=82.90 Aligned_cols=178 Identities=8% Similarity=-0.079 Sum_probs=134.0
Q ss_pred hhhHHhccCCcc-hHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHH
Q 004720 138 TGVVWHDLKKYD-LASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLE----------QNLAITLLNRA 206 (733)
Q Consensus 138 ~G~~~~~~g~~~-~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~----------~~~A~~~~~rA 206 (733)
..+...+.|++. .|..++++|++..|+-+ .+..+|..+....|+ +++|+.+++++
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~--------------taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~ 99 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFA--------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 99 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCH--------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH--------------HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH
Confidence 333444567776 66899999998876422 345566666667777 99999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
....|.+.. ++++.|-.+...++.+ +++++.++.+++++ ++.+ ..+|...+.+..
T Consensus 100 l~~~pK~y~-------aW~hR~w~l~~l~~~~-~~~el~~~~k~l~~---d~~N--------------~~aW~~R~~~l~ 154 (567)
T 1dce_A 100 LRVNPKSYG-------TWHHRCWLLSRLPEPN-WARELELCARFLEA---DERN--------------FHCWDYRRFVAA 154 (567)
T ss_dssp HHHCTTCHH-------HHHHHHHHHHTCSSCC-HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHH
T ss_pred HHhCCCCHH-------HHHHHHHHHHHccccc-HHHHHHHHHHHHhh---cccc--------------ccHHHHHHHHHH
Confidence 999887664 5888888888888311 79999999999999 6533 237888888888
Q ss_pred ccC-cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhc--------------CChHHHHHHHHHhhhccCCchHHHH
Q 004720 287 QKG-EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGL--------------GRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 287 ~~~-~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~--------------g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
..+ .+++++++++.+.+. ++.+.++++.++.++... +.+++|++.+...+...|.....|.
T Consensus 155 ~l~~~~~~el~~~~~~I~~----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 155 QAAVAPAEELAFTDSLITR----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp HTCCCHHHHHHHHHTTTTT----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred HcCCChHHHHHHHHHHHHH----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 888 899999999988875 467778889999988875 4468999999888865565666665
Q ss_pred hHHHHHH
Q 004720 352 SAVEAYF 358 (733)
Q Consensus 352 s~~~ly~ 358 (733)
...-++.
T Consensus 231 y~~~ll~ 237 (567)
T 1dce_A 231 YHRWLLG 237 (567)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 4444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=76.86 Aligned_cols=89 Identities=8% Similarity=-0.016 Sum_probs=71.0
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCC-------CHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETN-------SLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~-------~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
+.+.|++|+..++++..+.|..+.. ++++|.++...++.. .+++|+..|++|+++ +|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea-------~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~---- 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADN-------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKK---- 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTC----
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCc----
Confidence 5788999999999999999997754 677777777665500 046999999999999 6533
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHcc
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKG-----------EYESVIKCVRVLREG 304 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~-----------~~ekAl~~l~~a~~~ 304 (733)
..++.+||++|...| +|++|+.+++.+.++
T Consensus 80 ----------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 80 ----------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 238899999998774 799999999999886
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.054 Score=63.25 Aligned_cols=177 Identities=8% Similarity=0.013 Sum_probs=122.0
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHhhccC-----------CCCch----hhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 441 AVLWN-CASILFRSKDYEASAEMFEKSMLYL-----------PFDVE----NRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 441 ~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~-----------~~~~~----~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
..+|- .+....+.|+++.|.+.|+.++... |.+.+ -+...++++...+......|+++.|..++
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35665 6777788999999999999998753 21100 00135667888888888889999999999
Q ss_pred HHHHhhCC-C-hHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 505 TEAEKLEP-N-IASAFLKFKIYLQK-NDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 505 ~~A~~ldp-~-~~t~~~~~ki~l~~-gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.+|.+..| . .......+.+-.+. ++.+.|.+.|+...+..+.++++...-+.+-...|+.+-|...++..+...+.
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~- 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD- 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS-
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-
Confidence 99988733 2 22222222333333 56899999999998887878998766677777788999999999988884432
Q ss_pred CCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 004720 582 KPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 582 ~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~ 622 (733)
+.....++...+++- ...|+.+.+.+..+++.+..++
T Consensus 537 ---~~~~~~lw~~~~~fE-~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 537 ---SHLLKMIFQKVIFFE-SKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp ---TTHHHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHSTT
T ss_pred ---HHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Confidence 222334333332332 2358888888888888877665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00034 Score=80.35 Aligned_cols=176 Identities=7% Similarity=-0.054 Sum_probs=128.7
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc----------HHHHHHHHHHHH
Q 004720 233 SKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE----------YESVIKCVRVLR 302 (733)
Q Consensus 233 ~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~----------~ekAl~~l~~a~ 302 (733)
..++. .++|+.++.+++.+ +|.+ ..+|...+.++...+. +++++.+++.+.
T Consensus 40 ~~~~~--~eeal~~~~~~l~~---nP~~--------------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 40 QAGEL--DESVLELTSQILGA---NPDF--------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp HTTCC--SHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCC--CHHHHHHHHHHHHH---Cchh--------------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 44552 58889999999999 6532 2377777777776665 999999999999
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcC--ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccC
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLG--RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRC 380 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g--~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~ 380 (733)
.. ++.++.+++.+.-++...| ++++|+..+.+++..
T Consensus 101 ~~----~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-------------------------------------- 138 (567)
T 1dce_A 101 RV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-------------------------------------- 138 (567)
T ss_dssp HH----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------------------------------------
T ss_pred Hh----CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------------------------------------
Confidence 86 4677888899999999999 458888776655531
Q ss_pred CchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcC-CHHHH
Q 004720 381 HVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSK-DYEAS 459 (733)
Q Consensus 381 ~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~-~y~~A 459 (733)
+|.+..+|.. .|....+.| .|+++
T Consensus 139 -------------------d~~N~~aW~~------------------------------------R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 139 -------------------DERNFHCWDY------------------------------------RRFVAAQAAVAPAEE 163 (567)
T ss_dssp -------------------CTTCHHHHHH------------------------------------HHHHHHHTCCCHHHH
T ss_pred -------------------ccccccHHHH------------------------------------HHHHHHHcCCChHHH
Confidence 2222222211 344445566 89999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--------------SLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--------------~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
++++..+++..|.+. ..+.+++.++.++ +.+++|++++++|+.++| +....++..-++
T Consensus 164 l~~~~~~I~~~p~n~-------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 164 LAFTDSLITRNFSNY-------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHHHTTTTTTCCCH-------HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCc-------cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 999999999988774 3456666666654 668999999999999999 777777777777
Q ss_pred HhcCCHH
Q 004720 525 LQKNDQE 531 (733)
Q Consensus 525 l~~gd~e 531 (733)
...+..+
T Consensus 237 ~~~~~~~ 243 (567)
T 1dce_A 237 GRAEPHD 243 (567)
T ss_dssp SCCCCCS
T ss_pred hcCCCcc
Confidence 6666633
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.84 E-value=7.8e-05 Score=65.29 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=62.3
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
.-|+.+|..++..++ |..|+.||++|++....+... ...+..++..||.+|.+.|++++|+.+++.+
T Consensus 6 ~dc~~lG~~~~~~~~---y~~A~~W~~~Al~~~~~~~~~----------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 6 EDCFELGKVAYTEAD---YYHTELWMEQALRQLDEGEIS----------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCC----------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc---hHHHHHHHHHHHHhhhccCCC----------cccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 459999999999999 999999999999986543210 1124568999999999999999999999999
Q ss_pred HccCCCCCCCCCcH
Q 004720 302 REGSFDGGDHHASL 315 (733)
Q Consensus 302 ~~~~~~~~~~~p~~ 315 (733)
.+. .+.++.+
T Consensus 73 l~l----~P~~~~~ 82 (104)
T 2v5f_A 73 LEL----DPEHQRA 82 (104)
T ss_dssp HHH----CTTCHHH
T ss_pred Hhc----CCCCHHH
Confidence 886 3555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.7e-05 Score=65.52 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.+.|..++..|+|++|+.+|+.++...|.+ ...+.++|.||..+|++++|++.++++++++|
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTY-------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3458999999999999999999999987744 45789999999999999999999999999987
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00029 Score=59.72 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA-SAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~-t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL 551 (733)
.++|.+|...|++++|++.++++++.+| ++. ..+.+..++...|++++|+++++......+.+++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 6789999999999999999999999999 888 899999999999999999999999999877666644
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00055 Score=58.90 Aligned_cols=72 Identities=19% Similarity=0.091 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 478 ILRAKSFRVLCLCYLGLSL---IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~---~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
++.+.++..+|.++...++ .++|...+++|+++|| ++...+++..++.+.|++++|+..++.+....+.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3556788888988876655 7999999999999999 9999999999999999999999999999988765555
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.016 Score=67.76 Aligned_cols=242 Identities=7% Similarity=-0.076 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHH-HHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHH
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAE-LELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAET 368 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi-~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~ 368 (733)
.+++...|+.+... .+.+|..++..++.+...|+.++|. ..+.+.+...|....+|+..+.+....+. +.+-+.
T Consensus 325 ~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 325 KARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34566778888875 3578889999999999999999997 88888886666677788777877766554 333333
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH-H
Q 004720 369 AKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC-A 447 (733)
Q Consensus 369 lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~-g 447 (733)
+.+++..+... ++.+. ...|..+. . ......-...+|-. +
T Consensus 401 yek~l~~l~~~-----------~~~~~--~~~p~~~~----------------~----------~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 401 ILSCIDRIHLD-----------LAALM--EDDPTNES----------------A----------INQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-----------HHHHH--HHSTTCHH----------------H----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------hhhhh--hccCcchh----------------h----------hhhhccchHHHHHHHH
Confidence 33221100000 00000 00010000 0 00001112234553 3
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
......|+.+.|...|..|+...|. ...+++...+.--.+.+ ++++|..+|+++++..| ++.-.....+...
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKL------VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGG------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3335678899999999999875221 12355655555555554 58999999999998877 5443333344455
Q ss_pred hcCCHHHHHHHHHHHHhccC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 526 QKNDQEGAINQILAMTICLD---FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~---~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..|+.+.|...++....... ...++...-+.+-.+.|+.+.+.+..+.+.+..+.+
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 67899999999998887654 233566666777778899999988888888876654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0026 Score=58.37 Aligned_cols=110 Identities=11% Similarity=-0.014 Sum_probs=87.6
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.+|+++|+.+++++.+.. .+.. + +|..+...+. .++|+.||++|.+. +.
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a-------~--lg~~y~~g~~---~~~A~~~~~~Aa~~---g~-------------- 56 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFG-------C--LSLVSNSQIN---KQKLFQYLSKACEL---NS-------------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTH-------H--HHHHTCTTSC---HHHHHHHHHHHHHT---TC--------------
T ss_pred ccCHHHHHHHHHHHHcCC--CHhh-------h--HHHHHHcCCC---HHHHHHHHHHHHcC---CC--------------
Confidence 357889999999999764 3322 2 7776666666 89999999999986 21
Q ss_pred cHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhh
Q 004720 273 LKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVE 341 (733)
Q Consensus 273 l~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~ 341 (733)
...+.+|+.+|.. .+++++|+++++.+-+. .+|.+.+..+.++.. .+++++|+..+++...
T Consensus 57 --~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 57 --GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp --HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 1267889999987 67999999999998763 478888999999988 6899999999987764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0024 Score=58.61 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|..++..+.+++|++||+++.+. ..+..+++++.+|.. .+++++|.+.+++|.+. .++...+.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg 100 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILG 100 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 577788888999999999999764 234678999999999 89999999999998765 4688889999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcc
Q 004720 522 KIYLQ----KNDQEGAINQILAMTICL 544 (733)
Q Consensus 522 ki~l~----~gd~e~Al~~l~~~~~~~ 544 (733)
.+|.. .+|.++|++.+++.....
T Consensus 101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 101 YKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99998 899999999999888763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.14 E-value=0.3 Score=54.69 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=88.2
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC-ChHHH
Q 004720 441 AVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 441 ~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp-~~~t~ 517 (733)
..+|. .+......++.+.|...|..+ . .|.. ...++...|..-...+ ++++|..+++.+++.-| .+...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~------~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV------GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC------CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 35665 444445678899999999999 3 2321 2345555554444444 69999999999999878 55332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
..........|+.+.|...++.+. .+..+...-+..-...|+.+.+.+.++.-.+.+.
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 223444567899999999998873 3567777777777788998888887877776554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.024 Score=63.86 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCChHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--EPNIASAFLKFK 522 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--dp~~~t~~~~~k 522 (733)
-..+.+.|++++|.++|+.-.. +.| + ...|..+..+|.+.|++++|.++++++.+. .|+..|.-.+..
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~P-d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQP-R-------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCC-C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-c-------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4456788999999999988553 333 1 346888889999999999999999998765 568888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc
Q 004720 523 IYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.+.+.|+.++|.+.++.|....
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0026 Score=59.77 Aligned_cols=76 Identities=21% Similarity=0.159 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhccC-CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHH
Q 004720 442 VLWNCASILFRSK---DYEASAEMFEKSMLYL-PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIAS 516 (733)
Q Consensus 442 llW~~g~~~~k~~---~y~~A~~~y~~aL~~~-~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t 516 (733)
..++.|..+.+.+ ++++++..++..+... | .++..+++++|..|.++|+|++|+++++.+++++| +...
T Consensus 34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p------~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc------cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4556888888888 7889999999998865 2 25678999999999999999999999999999999 7766
Q ss_pred HHHHHHH
Q 004720 517 AFLKFKI 523 (733)
Q Consensus 517 ~~~~~ki 523 (733)
+.+.-.|
T Consensus 108 ~~Lk~~i 114 (152)
T 1pc2_A 108 KELERLI 114 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.03 Score=60.20 Aligned_cols=138 Identities=12% Similarity=-0.087 Sum_probs=90.7
Q ss_pred HHHHHHHHc---cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 185 ARSRTAWEV---LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 185 ~rA~~a~~~---g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.|+..++.. .++.+|+.++++|++++|+++..+..++..|... ...+.. -.....-+.+++........+
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~----~~~~~~--~~~~~~~l~~a~~a~~a~~~~- 273 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR----HSQHPL--DEKQLAALNTEIDNIVTLPEL- 273 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----HHHSCC--CHHHHHHHHHHHHHHHTCGGG-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hccCCC--chhhHHHHHHHHHHHHhcccC-
Confidence 445555544 4457999999999999999887777677666621 111110 122223334444432211111
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+.-..++..++..++..|++++|+..++.+...+ + +...+.+.++++...|++++|+..+.+.+.
T Consensus 274 ----------~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 ----------NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----M-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1123377778888888899999999999999852 1 233447889999999999999999988884
Q ss_pred ccC
Q 004720 342 IKG 344 (733)
Q Consensus 342 ~~~ 344 (733)
..|
T Consensus 339 L~P 341 (372)
T 3ly7_A 339 LRP 341 (372)
T ss_dssp HSC
T ss_pred cCC
Confidence 433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.03 Score=53.07 Aligned_cols=114 Identities=11% Similarity=-0.055 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch--hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE--HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~--~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
.|..+....+..|.|+-|+...+.++.+....++ .....+.+++.+|..++..++ |..|...|++|+.+.+.-+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e---yrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE---YRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHhc
Confidence 4556678888999999999999999988754443 235567788899999999999 99999999999998664221
Q ss_pred Cccc---------chhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 260 EART---------REETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 260 ~~~~---------~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.... .+..... ..-..+-+.++.||.+.++++.|+..++
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccccccccCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 1100 0000000 0012244557888888888888876544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.063 Score=57.69 Aligned_cols=76 Identities=16% Similarity=0.021 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAA 555 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~ 555 (733)
..+.++..++..++..|++++|+..+++|+.++|+......+.+++...|+.++|++.|++...+.+..+ .+.++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~~ 350 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWIE 350 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHHh
Confidence 4567889999999989999999999999999999877888899999999999999999999999987554 455553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.03 Score=47.79 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=54.0
Q ss_pred HHHHHHhcCC---HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 446 CASILFRSKD---YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 446 ~g~~~~k~~~---y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.|..++-.++ .++|..+++.+|..+|.+ .+....+|..+.+.|+|++|+++++++++.+| .+.
T Consensus 12 ~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 12 KATTLYYLHKQAMTDEVSLLLEQALQLEPYN-------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 6777765555 799999999999998865 35678899999999999999999999999999 443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.02 Score=59.46 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHh-c
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-----SLIDRAQEYITEAEKLEP-N-IASAFLKFKIYLQ-K 527 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-----~~~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~-~ 527 (733)
..+|....+++++++|.- .....+..++..|.++ |+.++|.++|++|++++| . +.+.+.....+.. .
T Consensus 179 l~~A~a~lerAleLDP~~-----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhCCCc-----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 478889999999998842 3567899999999996 999999999999999999 4 9999999999888 4
Q ss_pred CCHHHHHHHHHHHHhccCCC-hH
Q 004720 528 NDQEGAINQILAMTICLDFT-TD 549 (733)
Q Consensus 528 gd~e~Al~~l~~~~~~~~~~-~~ 549 (733)
|+.++|.+++++....++.. |+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CCHHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999987643 55
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.037 Score=51.90 Aligned_cols=88 Identities=8% Similarity=-0.044 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhC-C--ChHHHHHHHHHHHhcCCH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS---LIDRAQEYITEAEKLE-P--NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~---~~~~A~e~~~~A~~ld-p--~~~t~~~~~ki~l~~gd~ 530 (733)
..+.+-|...+...+ ....+.+++|.|+.+.+ ++++|+..+++.++.+ | +..+.|+++-.+.+.||+
T Consensus 15 ~~~~~~y~~e~~~~~-------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHTTC-------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHccCC-------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 445556666654333 23467899999999998 7779999999999998 7 478889999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHH
Q 004720 531 EGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~~lL 551 (733)
++|+++++++.+..+.++...
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999977766633
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.053 Score=51.34 Aligned_cols=99 Identities=6% Similarity=-0.110 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---C-Ch-
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLP--FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE---P-NI- 514 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~--~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld---p-~~- 514 (733)
.+..+....+..|.|+.|+-.....+.... .+...+...+.++..+|..+...++|.+|..+|++|+++- + ++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344688889999999999999999665432 2211235788999999999999999999999999987662 1 11
Q ss_pred ---------------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 515 ---------------------ASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 515 ---------------------~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
...|..+++++..|++++|+..++.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 24466788888899999999877655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.73 E-value=3 Score=46.46 Aligned_cols=166 Identities=8% Similarity=-0.112 Sum_probs=88.2
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhh---------------------------------hhhHHHHHHH
Q 004720 442 VLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENR---------------------------------ILRAKSFRVL 487 (733)
Q Consensus 442 llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~---------------------------------~~~akl~r~l 487 (733)
-+|- .+.-....|+.+.|.+.|+.|+.. |.+..-+ ....+++...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 3455 444456778888888888888877 6542100 1112333344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHH
Q 004720 488 CLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQ-KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 488 a~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~-~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
+......+++++|.+++.+| +..+ ........+.+-.. .++.+.|...++...+..+..|++...-+....+.|+.+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~ 371 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE 371 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Confidence 44444456677777777777 3322 22211111222222 335777777777776655556665444455555666666
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 004720 566 VAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTS 621 (733)
Q Consensus 566 ~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~ 621 (733)
-+...++.+. . .. .+....+.+ -...|+.+.+-+.+.++...+.
T Consensus 372 ~aR~l~er~~-----k---~~---~lw~~~~~f-E~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 372 NARALFKRLE-----K---TS---RMWDSMIEY-EFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHSC-----C---BH---HHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----H---HH---HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHhc
Confidence 6655555441 0 11 111111111 1224777777777888887665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.13 Score=57.91 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=103.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCC------CHHHHHHHHHHHHHHHhcCCCC
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETN------SLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~------~~e~A~~~l~~Alel~~~~~~~ 260 (733)
-..+.+.|+.++|+.++++....-. .|+... |..+=..+...+... ..+.|...|++-.+- +.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~t-----yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~-- 101 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGV-QLSQYH-----YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KV-- 101 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHH-----HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhH-----HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CC--
Confidence 4566689999999999999886422 222211 221111111211100 045555555443221 21
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcH--HHHHHHHHHhcCChHHHHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASL--PVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~--~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+. ..++..|..+|...|++++|...++.+.+ ....|.. +-..+..+.+.|+.++|.+.+..
T Consensus 102 ---~Pd--------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 102 ---VPN--------EATFTNGARLAVAKDDPEMAFDMVKQMKA-----FGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp ---CCC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 011 23788899999999999999999999887 3455654 45667888999999999999988
Q ss_pred hhhc-cCCchHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 339 MVEI-KGIPECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 339 ~l~~-~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
|... .......|..++..|...+. +.|++.++++
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 8743 33445557778888888877 7777777755
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.2 Score=54.41 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=89.2
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE 215 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~ 215 (733)
.+.|..|++.|+|..|..++.+....+.. .++...+++++......+...||+.++...+.+|......-+.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~--------~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKK--------LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 38899999999999999999888877632 1234567899999999999999999999999999988654322
Q ss_pred hHHHHHHHHHHHhHHHH-hcCCCCCHHHHHHHHHHHHHHHh
Q 004720 216 HYKSLANQYLTFAKSAL-SKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~-~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
.....+.+...-|+.++ ..++ |.+|...|-++++-..
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rd---yk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERD---FKTAFSYFYEAFEGFD 212 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhHHHHHhccC---HHHHHHHHHHHHhccc
Confidence 23457778888899999 8999 9999999998886544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.87 Score=47.17 Aligned_cols=199 Identities=9% Similarity=-0.026 Sum_probs=119.2
Q ss_pred HHhHHHHHHHHHHhhc---CCCCCChHHH-HHHHHHHHhhhHHhccC--------------CcchHHHHHHHHHHHHHHH
Q 004720 104 VANLRHVAADLLSLAA---DVSGIPSPAI-KSASFYFKTGVVWHDLK--------------KYDLASGCFEKATEIVSKL 165 (733)
Q Consensus 104 ~a~~R~~a~~ll~~~~---~~~~~~~~~~-~~~~~~~k~G~~~~~~g--------------~~~~A~~~lekA~e~~~~~ 165 (733)
...+|...+.-|-+-. ..+|.+..+. ..++.+..-|++|.... ++..|...|.+|.++..+.
T Consensus 41 ~elv~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~ra 120 (301)
T 3u64_A 41 LDLVAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3456666555444433 2345555554 34477777788887653 3556677777777665432
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHH-HHhHHHH-hcCCCCC----
Q 004720 166 DISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYL-TFAKSAL-SKNETNS---- 239 (733)
Q Consensus 166 ~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~-~~G~~~~-~~~~~~~---- 239 (733)
.-.+..+ -.-.+.+|+...=...+.+ ..+..+ + ..|| -++.... ....+++
T Consensus 121 L~~~~~~--------------~~~~~~~~~~~~~~~~l~~---~~~~dv---e---~L~W~ai~~ss~a~~~~gg~~Al~ 177 (301)
T 3u64_A 121 LETAYPG--------------FTREVFSGDEQRLHKVLSR---CTRVDV---G---TLYWVGTGYVAAFALTPLGSALPD 177 (301)
T ss_dssp HHHHSTT--------------HHHHHTSSCHHHHHHHHTT---CCGGGH---H---HHHHHHHHHHHHHTTSCTTSCCHH
T ss_pred HHHhCcc--------------HHHHHHhcchhhHHHHHHH---cCcccc---H---HHHHHHHHHHHHHhcCCCChHHHH
Confidence 2110000 0013344443221111211 222222 1 1233 2333322 2222222
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHccCCCCCCC-C
Q 004720 240 -LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK-----GEYESVIKCVRVLREGSFDGGDH-H 312 (733)
Q Consensus 240 -~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~-----~~~ekAl~~l~~a~~~~~~~~~~-~ 312 (733)
...|...+++|+++ +|.. .....+..|+..|... |+.++|..+++.+.+++ +. +
T Consensus 178 ~l~~A~a~lerAleL---DP~~------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln----P~~~ 238 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSY------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC----SAHD 238 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTH------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----CTTC
T ss_pred hHHHHHHHHHHHHHh---CCCc------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----CCCC
Confidence 67888899999999 6532 2345899999999885 89999999999999984 44 4
Q ss_pred CcHHHHHHHHHHhc-CChHHHHHHHHHhhhccC
Q 004720 313 ASLPVLAMKAWLGL-GRYNEAELELRGMVEIKG 344 (733)
Q Consensus 313 p~~~~lk~~il~~~-g~~deAi~~l~~~l~~~~ 344 (733)
+...+..++.+... |+++++...+.+.+..++
T Consensus 239 id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 239 PDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 78889999999885 999999999998886544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.2 Score=45.33 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHH---HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHH
Q 004720 442 VLWNCASILFRSKDYEA---SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~---A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~ 517 (733)
..++.|..+.+.++-.+ +|..++..+.-.. + ..+-.+.+.+|..|.++|+|++|..+++..++++| +.-..
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p---~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--K---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--c---chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 34567777777777766 8888888776431 1 25668899999999999999999999999999999 76655
Q ss_pred HHHHH
Q 004720 518 FLKFK 522 (733)
Q Consensus 518 ~~~~k 522 (733)
-+.-.
T Consensus 112 ~Lk~~ 116 (126)
T 1nzn_A 112 ELERL 116 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.72 Score=42.47 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCH---HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHH
Q 004720 443 LWNCASILFRSKDY---EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y---~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
.++.+..+.+.++- .+++..++..+.-.|. .+-.+++.+|..|.++|+|++|..+++..++.+| +.-..-
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44556566565544 5788888887764442 3457899999999999999999999999999999 765554
Q ss_pred HHHHH
Q 004720 519 LKFKI 523 (733)
Q Consensus 519 ~~~ki 523 (733)
+.-.|
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.85 Score=42.45 Aligned_cols=99 Identities=11% Similarity=0.005 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhccCCCCc-hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHH
Q 004720 457 EASAEMFEKSMLYLPFDV-ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~-~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al 534 (733)
+.-++.|+.|..-.|... ..+...+.+..+.|.- ..+++.++|.++|+.++.+.. -.+.....++.-+++|+.+.|.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 677889999987666432 1123455555666643 677999999999999988866 4445555667777899999999
Q ss_pred HHHHHHHhccCCChHHHHHHHH
Q 004720 535 NQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.+.+.....+....+|..|++
T Consensus 115 kILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 115 QLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHH
Confidence 9998888877766677776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.75 Score=50.44 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=82.1
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
..+.|.-|++.|+++.|.++|.++-+.+.. . + ..++++....+++...||+..+...+.|+..+....+
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~--~-----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIS----T--G-----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----C--C-----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----h--H-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence 456788899999999999999998876521 0 1 1267888888999999999999999999998865533
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+ ...........|..++..++ |.+|.+.|-.++..
T Consensus 203 d-~~~~~~lk~~~gl~~l~~r~---f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 D-WERRNRYKTYYGIHCLAVRN---FKEAAKLLVDSLAT 237 (429)
T ss_dssp C-THHHHHHHHHHHHGGGGTSC---HHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHhcc
Confidence 2 23345566677999999999 99999999888765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.55 E-value=0.93 Score=41.21 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=55.2
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHH
Q 004720 444 WNCASILFRSK---DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFL 519 (733)
Q Consensus 444 W~~g~~~~k~~---~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~ 519 (733)
++.|..+.+.+ +..+++..++..+...| ..+-.+++.+|..|.++|+|++|..+++..++++| +.-..-+
T Consensus 44 F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~------~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 44 FNYAWGLIKSTDVNDERLGVKILTDIYKEAE------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34444444444 45678999888776543 24567899999999999999999999999999999 7665554
Q ss_pred HHHH
Q 004720 520 KFKI 523 (733)
Q Consensus 520 ~~ki 523 (733)
.-.|
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.48 E-value=8.5 Score=41.52 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=118.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCC-C---h-HHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-SLIDRAQEYITEAEKLEP-N---I-ASAF 518 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-~~~~~A~e~~~~A~~ldp-~---~-~t~~ 518 (733)
..|..+.+.|++++-.+.+.....|.+.-.. .-.+|+-|++.-.+... +..+.-.+.|.++++-.. + . .+..
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISK--AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999887765442 57899999999988875 567777888888776432 2 2 2223
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhcc---CCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHH
Q 004720 519 --LKFKIYLQKNDQEGAINQILAMTICL---DFTTDFLSLA---AHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVV 590 (733)
Q Consensus 519 --~~~ki~l~~gd~e~Al~~l~~~~~~~---~~~~~lL~la---~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~ 590 (733)
.+.++|...|++.+|++.+..+..-. |...-++... .+.....+|...+..++..-...... .+.|..+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i~a 180 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHHHH
Confidence 67999999999999999998887533 2233333333 44566789999998888766553221 112345778
Q ss_pred HHHHHHHHHHh-hcCChhHHHHHHHHHH
Q 004720 591 VLRTIVTILTQ-ETGNESEVLKYMKRAH 617 (733)
Q Consensus 591 ~lR~li~l~~~-~~~~~~~~l~~~~~A~ 617 (733)
.+|+.-.++.- ..++-.+..++|-.|+
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 88877777755 5556554444444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.96 Score=49.86 Aligned_cols=113 Identities=14% Similarity=-0.008 Sum_probs=83.0
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+....+.++.+.+.|++..|...+.... ++ +.. ..++...+++++.+++.+...||+..|...+.|+....
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~--~E---t~~---~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQ--VE---TYG---SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH---HCS---SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH--HH---HHh---cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 34455677888888899888888776543 11 111 12234457889999999999999999999999997544
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELC 254 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~ 254 (733)
...++........+...|+.+...++ |.+|.+.|-++++..
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~---y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKRE---YLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcc
Confidence 33333334455566678999999999 999999999999863
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.54 E-value=1.1 Score=40.50 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhCCCHHH---HHHHHHHHHhhC-C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 481 AKSFRVLCLCYLGLSLIDR---AQEYITEAEKLE-P--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~---A~e~~~~A~~ld-p--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
....+++|.|+++.++... ++..+++..+.+ | .-...|+++--+.+.|++++|+++++.+....+.++....|
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4678999999999987666 888888887776 5 45677889999999999999999999999998877775444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.82 E-value=3.1 Score=42.37 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=82.6
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHH--HHHHHcCCHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAA--HEAVACQALSV 566 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~--~~a~~~~~~~~ 566 (733)
-.++-|+++.|++.+...++-+| +...+-.+|+++...||+++|.++++.+.++ +|+....+. ..++.+....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~R- 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR- 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHHH-
Confidence 46788999999999999999999 9999999999999999999999999999998 555333331 1222222222
Q ss_pred HHHHHHHHHhhhcCCC-C-CchhHHHHHHHHHHHH-HhhcCChhHHHHHHHHHHHHhhhc
Q 004720 567 AVAALSNLLNFYTSGK-P-MPTKEVVVLRTIVTIL-TQETGNESEVLKYMKRAHARTSEI 623 (733)
Q Consensus 567 a~~aL~~Ll~~~~~~~-~-~~~~~~~~lR~li~l~-~~~~~~~~~~l~~~~~A~~~l~~~ 623 (733)
..++. ... | ++.....-+..++..+ ....|+.+..-..-.+|++..+..
T Consensus 82 -----~~vfa---G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 82 -----KDFAQ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -----HHHTT---SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -----HHHHc---CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 22232 111 1 1111223444566666 444688888888888888765443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.59 E-value=18 Score=39.56 Aligned_cols=96 Identities=9% Similarity=-0.102 Sum_probs=72.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh-ccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCC--hHHH-
Q 004720 446 CASILFRSKDYEASAEMFEKSM-LYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK----LEPN--IASA- 517 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL-~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~----ldp~--~~t~- 517 (733)
.+..++..|+|.+|.+...... +.+.... ......++-.....|+..+++.+|..+++++.. ..+. ....
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~--~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSME--MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 6889999999999999999865 3333322 246677777888899999999999999998742 2222 2333
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 518 -FLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 518 -~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
..+.+++...+++.+|-++|..+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35788888999999999988777554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.06 E-value=5.8 Score=37.84 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=72.3
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 443 LWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 443 lW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|+ .|..+..+|+++.|.+.|..+-.+ -.+..-|.-.|+.++-....+.|..-.. ....|
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------~~L~~Ly~~tg~~e~L~kla~iA~~~g~----~n~af 96 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSF---------------DKLSFLYLVTGDVNKLSKMQNIAQTRED----FGSML 96 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------HHHHHHHHHHTCHHHHHHHHHHHHHTTC----HHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCH---------------HHHHHHHHHhCCHHHHHHHHHHHHHCcc----HHHHH
Confidence 566 788899999999999999987432 3344456666776665555554433322 23457
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNL 574 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~L 574 (733)
.+++..||++++++.|...... ..|+..|.-.|-.+++...++.+
T Consensus 97 ~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHHHh
Confidence 8888999999999988555443 45677777888888887665544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=6 Score=42.50 Aligned_cols=98 Identities=6% Similarity=-0.052 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCC----Cc--hhh---------hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPF----DV--ENR---------ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~----~~--~~~---------~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.|......|+.+.|++.+..++..+.. +. ..+ .....+...++..++.+|++.+|+..+..+...
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 566666789999999999999976521 10 000 122334556778889999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
+| +-..+..+-.++.+.|+..+|++.|+.+...
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 7667777788889999999999999888764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.37 E-value=4 Score=37.51 Aligned_cols=74 Identities=7% Similarity=-0.120 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 480 RAKSFRVLCLCYLGLSLI---DRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~---~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
..+..++.|.|.++..+. .+++..+++..+.+| . -.+.|+++--+.+.||+++|.++.+.+....+.+.....|
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 346789999999998754 578889998888888 3 4677889999999999999999999999998887775544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.88 E-value=2.4 Score=38.47 Aligned_cols=74 Identities=7% Similarity=-0.146 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 480 RAKSFRVLCLCYLGLSL---IDRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~---~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.....++.|.|.++.++ ..+++..+++.++.+| . -.+.|+++--+.+.||+++|.++++.+....+.+...+.|
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34678899999988875 4578899999888888 3 5678889999999999999999999999998877775544
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=86.04 E-value=4.5 Score=38.30 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH--hh--CCCh-------
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE--KL--EPNI------- 514 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~--~l--dp~~------- 514 (733)
.+-..|=.|.|..|+-... . .+++...+.-++||-++++|.+|+..+++.+ +. ||++
T Consensus 39 ~~I~LyyngEY~R~Lf~L~------~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLH------K------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHH------T------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred hhhhhhhcchHhHHHHHHH------h------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence 5667788888887764332 1 2456666777999999999999999999887 33 3322
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 515 --------ASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 515 --------~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
+-..+++++..+.|+.++|+.++.
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 223356777777777777777663
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.85 E-value=4 Score=43.91 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=77.6
Q ss_pred HhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc-----cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 227 FAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR-----TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 227 ~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~-----~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
-|......++ .+.|...|++|+.+-..+..... ....-..+.+.+..++..++.+++..|++++|+..+..+
T Consensus 121 ~~~~~~~~~~---~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 121 AGVHAAAAGR---FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCC---HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445556677 88999999999998654432211 011223345667778888999999999999999888777
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
... .+.+-..+...+++++..|+..+|+..+...
T Consensus 198 ~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 198 TFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 764 3455567799999999999999999997643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.82 E-value=4.9 Score=43.81 Aligned_cols=96 Identities=7% Similarity=-0.072 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CCChHHH--
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EPNIASA-- 517 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp~~~t~-- 517 (733)
..|..+++.|+|+.|++.|........... .+..++.....+++..+++..+..+++++..+ ||.....
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTG----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCC----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 379999999999999999999876554332 45678888999999999999999999998655 2223322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.....+++..+++..|.+.+-......
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 345666778999999988886654433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=83.37 E-value=10 Score=43.80 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 443 LWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 443 lW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|. .|..+.+.++++.|++.|..+-. +..+...|...++.++..+..+.+..... . ...+
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d---------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-~---~~A~ 743 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHD---------------LESLFLLHSSFNNKEGLVTLAKDAETTGK-F---NLAF 743 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTC---------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-H---HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccC---------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-h---HHHH
Confidence 454 67888888999999888887632 23445556667777766666655544322 1 1235
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
.+|++.|++++|++.+..+... ..|+..|...+..+
T Consensus 744 ~~~~~~g~~~~a~~~~~~~~~~--------~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 744 NAYWIAGDIQGAKDLLIKSQRF--------SEAAFLGSTYGLGD 779 (814)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCCH
T ss_pred HHHHHcCCHHHHHHHHHHcCCh--------HHHHHHHHHhCCCh
Confidence 5666788888888887555332 45566666655444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.17 E-value=5.8 Score=47.90 Aligned_cols=119 Identities=7% Similarity=-0.006 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc-----cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCChHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSML-----YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--EPNIASAF 518 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~-----~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--dp~~~t~~ 518 (733)
.-+.+.+.|+.++|.+.|..--. ..| ....|.-+...|.+.|++++|.++++++.+. .|+..|+-
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--------dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 55778999999999999965321 222 2346888999999999999999999998665 57999998
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004720 519 LKFKIYLQKND-QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLL 575 (733)
Q Consensus 519 ~~~ki~l~~gd-~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll 575 (733)
.+...+.+.|+ .++|.+.++.|... +..||.+.-...+ .....+.++.++..+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll--~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLL--SEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCC--CHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhccccc--ChhhHHHHHHHHHHhC
Confidence 88889999887 57899999999875 5678844433221 1112444555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 733 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.64 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.49 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.33 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.28 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.26 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.25 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.24 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.12 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.08 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.95 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.89 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.63 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.4 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.38 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.3 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.17 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.91 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.18 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.85 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.36 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-19 Score=189.93 Aligned_cols=363 Identities=12% Similarity=0.023 Sum_probs=235.2
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchh
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEH 216 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~ 216 (733)
..|+..++.|+|+.|..+|+++++..|. . ...+...+.++...|++++|+..+++++.+.|..+.
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~--------~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~- 68 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPD--------N------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE- 68 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-
Confidence 5688899999999999999999876531 1 245666788999999999999999999999988653
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHH
Q 004720 217 YKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIK 296 (733)
Q Consensus 217 ~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~ 296 (733)
+++++|..+...|+ +++|+.++.++.+. .+.... ........+...+.+..+..
T Consensus 69 ------a~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 122 (388)
T d1w3ba_ 69 ------AYSNLGNVYKERGQ---LQEAIEHYRHALRL---KPDFID--------------GYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp ------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTCHH--------------HHHHHHHHHHHHSCSSHHHH
T ss_pred ------HHHHHHHHhhhhcc---cccccccccccccc---cccccc--------------cccccccccccccccccccc
Confidence 57888999999999 99999999999987 332211 11222223333333333332
Q ss_pred HHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 297 CVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 297 ~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
........ ....+.............+....+.......+...+.....+...+..+...+. +.|...+.++
T Consensus 123 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--- 195 (388)
T d1w3ba_ 123 AYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA--- 195 (388)
T ss_dssp HHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH---
T ss_pred cccccccc----ccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHH---
Confidence 22222221 122333334444444444455555555444443333333333333333333322 2233332222
Q ss_pred hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC
Q 004720 376 LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD 455 (733)
Q Consensus 376 ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~ 455 (733)
+ +..|++...+...+.........+..+..+. +...........+.+.|..+++.|+
T Consensus 196 -------------------l--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (388)
T d1w3ba_ 196 -------------------V--TLDPNFLDAYINLGNVLKEARIFDRAVAAYL--RALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp -------------------H--HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -------------------H--HhCcccHHHHHHHhhhhhccccHHHHHHHHH--HhHHHhhhHHHHHHHHHHHHHHCCC
Confidence 1 1122222222112211111111111111111 0000001112234458999999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al 534 (733)
|++|+++|+.++.+.|.+ ..++.+++.+|...|++++|++.++++....| +....+.+..++...|++++|+
T Consensus 253 ~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 253 IDLAIDTYRRAIELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHHHHHHHHHHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHH
Confidence 999999999999988754 35789999999999999999999999999999 8888999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 535 NQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
+.+++..+..+.+++.+..-+....+.|+.+.|+..++..++.
T Consensus 326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999888777877666667788899999999999998884
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.4e-18 Score=178.53 Aligned_cols=362 Identities=12% Similarity=0.001 Sum_probs=251.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
.|..+...|++++|+..++++++..|..+. +++.+|..++..|+ +++|+.+|++++++ +|.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~~~---~~~A~~~~~~al~~---~p~~----- 66 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTG-------VLLLLSSIHFQCRR---LDRSAHFSTLAIKQ---NPLL----- 66 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCC-----
Confidence 467788999999999999999999987664 57888999999999 99999999999998 5432
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
..++..+|.+|...|++++|+.++..+... .+..+.............+.+..+.............
T Consensus 67 ---------~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (388)
T d1w3ba_ 67 ---------AEAYSNLGNVYKERGQLQEAIEHYRHALRL----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp ---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred ---------HHHHHHHHHHhhhhcccccccccccccccc----ccccccccccccccccccccccccccccccccccccc
Confidence 237889999999999999999999988875 3455555566667777777777766666554433332
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
...........+..... ..+..... +.+ ...|+....+...+.........+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~ 189 (388)
T d1w3ba_ 134 LYCVRSDLGNLLKALGRLEEAKACYL----------------------KAI--ETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHH----------------------HHH--HHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccccccccccccccchhhhhHHHHH----------------------Hhh--ccCcchhHHHHhhcccccccCcHHHHH
Confidence 32222222222221111 11111111 221 122333333222222222222222222
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
..+. +.....+.....+.+.|..++..|+|++|++.|+.+....|.. +..+.+++.+|...|++++|++.+
T Consensus 190 ~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~ 260 (388)
T d1w3ba_ 190 HHFE--KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHH--HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH--HHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2211 0000011112234458999999999999999999998876533 457889999999999999999999
Q ss_pred HHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCC
Q 004720 505 TEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKP 583 (733)
Q Consensus 505 ~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~ 583 (733)
+++++++| ++...+.+..++...|++++|++.++......+.++.....-+......|+.+.|+..++..++..+.+
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-- 338 (388)
T d1w3ba_ 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-- 338 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--
Confidence 99999999 888899999999999999999999999998888788777777778888999999999999988843222
Q ss_pred CchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 004720 584 MPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHAR 619 (733)
Q Consensus 584 ~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~ 619 (733)
+ .++..+ ..+....|+.++.+.+|++|.+.
T Consensus 339 -~----~~~~~l-a~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 339 -A----AAHSNL-ASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp -H----HHHHHH-HHHHHTTTCCHHHHHHHHHHHTT
T ss_pred -H----HHHHHH-HHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 222122 22334457888899999998853
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.8e-16 Score=164.89 Aligned_cols=253 Identities=12% Similarity=0.041 Sum_probs=176.5
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.++.|..++..|+ +++|+.+|+++++. +|.+ ..+|..+|.+|...|++++|+.+++.+.+
T Consensus 22 ~~~~g~~~~~~g~---~~~A~~~~~~al~~---~P~~--------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 81 (323)
T d1fcha_ 22 PFEEGLRRLQEGD---LPNAVLLFEAAVQQ---DPKH--------------MEAWQYLGTTQAENEQELLAISALRRCLE 81 (323)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHS---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHhhhc
Confidence 5789999999999 99999999999987 5532 23789999999999999999999999988
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCch
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS 383 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~ 383 (733)
+ .+.++..++..+.++...|++++|+..+...+...+....+...................+.... ....
T Consensus 82 ~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 151 (323)
T d1fcha_ 82 L----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL------SDSL 151 (323)
T ss_dssp H----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH------HHHH
T ss_pred c----ccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHH------HhhH
Confidence 6 46778888999999999999999999998887544332222100000000000000000000000 0000
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 384 AKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMF 463 (733)
Q Consensus 384 ~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y 463 (733)
...+...+ ++++.... ......+++..|..++..|+|++|+++|
T Consensus 152 ~~~a~~~~-----------------------------~~al~~~p-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 195 (323)
T d1fcha_ 152 FLEVKELF-----------------------------LAAVRLDP-------TSIDPDVQCGLGVLFNLSGEYDKAVDCF 195 (323)
T ss_dssp HHHHHHHH-----------------------------HHHHHHST-------TSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-----------------------------HHHHHHhh-------cccccccchhhHHHHHHHHHHhhhhccc
Confidence 00000000 00110000 0001123445899999999999999999
Q ss_pred HHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 464 EKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 464 ~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
+.++...|.+ +.++.++|.||..+|++++|+++|+++++++| ++...+.++.++...|++++|++.|++..+
T Consensus 196 ~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 196 TAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccccccccc-------ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999887643 46789999999999999999999999999999 899999999999999999999999999888
Q ss_pred ccCCChH
Q 004720 543 CLDFTTD 549 (733)
Q Consensus 543 ~~~~~~~ 549 (733)
..+.++.
T Consensus 269 l~p~~~~ 275 (323)
T d1fcha_ 269 MQRKSRG 275 (323)
T ss_dssp HHHTC--
T ss_pred hCCcChh
Confidence 7654443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.8e-16 Score=160.01 Aligned_cols=254 Identities=15% Similarity=0.041 Sum_probs=180.2
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE 215 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~ 215 (733)
++.|..++..|+++.|..+|++|++..|. . .+.+...+.++...|+++.|+.++.++..+.|..+.
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~--------~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 88 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK--------H------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 88 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccc
Confidence 46799999999999999999999976542 1 345666788999999999999999999999998664
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhh-hhcHHHHHHHHHHHHhccCcHHHH
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTEL-KGLKFKTLRFISAIHLQKGEYESV 294 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~-~el~~~~l~~La~~yl~~~~~ekA 294 (733)
.++++|..+...|+ +++|+..+++++.+ .+............ ..............+...+.+++|
T Consensus 89 -------~~~~la~~~~~~~~---~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 89 -------ALMALAVSFTNESL---QRQACEILRDWLRY---TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp -------HHHHHHHHHHHTTC---HHHHHHHHHHHHHT---STTTGGGCC---------------CTTHHHHHHHHHHHH
T ss_pred -------cccccccccccccc---ccccccchhhHHHh---ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHH
Confidence 47788999999999 99999999999988 33222110000000 000000111112233344567888
Q ss_pred HHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHH
Q 004720 295 IKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFL 374 (733)
Q Consensus 295 l~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~ 374 (733)
+..+..+.+..+ ...+|.+++..+.++...|++++|+..+...+..
T Consensus 156 ~~~~~~al~~~p--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------------------------------- 201 (323)
T d1fcha_ 156 KELFLAAVRLDP--TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-------------------------------- 201 (323)
T ss_dssp HHHHHHHHHHST--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHhh--cccccccchhhHHHHHHHHHHhhhhccccccccc--------------------------------
Confidence 888877776532 2334555677788888889999888887654421
Q ss_pred hhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcC
Q 004720 375 GLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSK 454 (733)
Q Consensus 375 ~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~ 454 (733)
.|++.. .+.+.|..+++.|
T Consensus 202 -------------------------~p~~~~------------------------------------~~~~lg~~~~~~g 220 (323)
T d1fcha_ 202 -------------------------RPNDYL------------------------------------LWNKLGATLANGN 220 (323)
T ss_dssp -------------------------CTTCHH------------------------------------HHHHHHHHHHHTT
T ss_pred -------------------------cccccc------------------------------------chhhhhhcccccc
Confidence 121211 1224788999999
Q ss_pred CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHH
Q 004720 455 DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 455 ~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
+|++|++.|+.++.+.|.+ +.+++++|.||.++|++++|+++|++|++++| +.....
T Consensus 221 ~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 221 QSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred cchhHHHHHHHHHHHhhcc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence 9999999999999987644 46799999999999999999999999999998 554433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3.6e-13 Score=138.38 Aligned_cols=301 Identities=11% Similarity=-0.021 Sum_probs=216.0
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
++...-.|...+..|+++.|..+|++|++..+. .+. ......+...+.++...|++++|+..+.++..+.+
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~------~~~---~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~ 82 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPP------GWF---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 82 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT------TCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC------CCc---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344555689999999999999999999886532 111 11134555668899999999999999999999988
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..+. .......++++|..+...++ +..+...+.+++.+........ ......++..++.+|...|++
T Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 83 QHDV-WHYALWSLIQQSEILFAQGF---LQTAWETQEKAFQLINEQHLEQ---------LPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCTT---------STHHHHHHHHHHHHHHHTTCH
T ss_pred hhcc-hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHhcccch---------hhHHHHHHHHHHHHHHHhcch
Confidence 7553 34566778899999999999 9999999999999876543222 122344677889999999999
Q ss_pred HHHHHHHHHHHccCC-CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHH
Q 004720 292 ESVIKCVRVLREGSF-DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAK 370 (733)
Q Consensus 292 ekAl~~l~~a~~~~~-~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk 370 (733)
++|..++..+..... ......+......+.++...++++++...+..... ...
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--------------------------~~~ 203 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN--------------------------LLG 203 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HHT
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------------------------HHH
Confidence 999999888877432 10111122234555555566666665555432211 000
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASIL 450 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~ 450 (733)
.... .. .....+....|..+
T Consensus 204 ---------------------------~~~~-~~--------------------------------~~~~~~~~~~~~~~ 223 (366)
T d1hz4a_ 204 ---------------------------NGKY-HS--------------------------------DWISNANKVRVIYW 223 (366)
T ss_dssp ---------------------------TSCC-CH--------------------------------HHHHHHHHHHHHHH
T ss_pred ---------------------------Hhcc-cC--------------------------------chHHHHHHHHHHHH
Confidence 0000 00 00011222367888
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------CC-ChHHHHHHHHH
Q 004720 451 FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL------EP-NIASAFLKFKI 523 (733)
Q Consensus 451 ~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l------dp-~~~t~~~~~ki 523 (733)
...|+++.|.++|..++...+.+. ......+.+++.+|..+|++++|.+.+++++.. .| .....+.+..+
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 300 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANN---HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTC---GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 899999999999999998877653 356678899999999999999999999998754 23 45677889999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 004720 524 YLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~ 543 (733)
+...|++++|++.++.....
T Consensus 301 ~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 301 YWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.9e-11 Score=125.16 Aligned_cols=294 Identities=14% Similarity=0.001 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
-.+...||.+++.+|++++|+.+++++++..|..+. ...+.+++.+|..+...|+ +++|+.+|++++++......
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~--~~~~~a~~~lg~~~~~~g~---~~~A~~~~~~a~~~~~~~~~ 86 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--YSRIVATSVLGEVLHCKGE---LTRSLALMQQTEQMARQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH--HHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc--HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhhcc
Confidence 356667899999999999999999999999887553 2345678899999999999 99999999999998554321
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCc---HHHHHHHHHHhcCChHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHAS---LPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~---~~~lk~~il~~~g~~deAi~~ 335 (733)
.......+..++.+|...+++++|...+..+..... ......+. .....+.++...|+++++...
T Consensus 87 -----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~ 155 (366)
T d1hz4a_ 87 -----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 155 (366)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence 223445788899999999999999988877665321 11222222 224556677777888777777
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+...+...+ ...+ .
T Consensus 156 ~~~~~~~~~-----------------------------------------------------~~~~-~------------ 169 (366)
T d1hz4a_ 156 ARSGIEVLS-----------------------------------------------------SYQP-Q------------ 169 (366)
T ss_dssp HHHHHHHTT-----------------------------------------------------TSCG-G------------
T ss_pred HHHHHHHhh-----------------------------------------------------hhhh-h------------
Confidence 654432100 0000 0
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
.....+...|..++..+++..+...+..+..+.......++..+.++..++..+...|
T Consensus 170 ----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 170 ----------------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp ----------------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 0001122357777888999999999999887655332223566778889999999999
Q ss_pred CHHHHHHHHHHHHhhCC-C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCChH---HHHHHHHHHHHcCCH
Q 004720 496 LIDRAQEYITEAEKLEP-N----IASAFLKFKIYLQKNDQEGAINQILAMTICL---DFTTD---FLSLAAHEAVACQAL 564 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp-~----~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~---~~~~~---lL~la~~~a~~~~~~ 564 (733)
++++|.+.+.++++..| + ....+.+..++...|++++|++.++.+.... ...|+ .+..-+......|+.
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 99999999999988876 3 2345568899999999999999999887543 22332 444445667788999
Q ss_pred HHHHHHHHHHHhh
Q 004720 565 SVAVAALSNLLNF 577 (733)
Q Consensus 565 ~~a~~aL~~Ll~~ 577 (733)
+.|+..++.-++.
T Consensus 308 ~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 308 SDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888876663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=8.2e-12 Score=124.71 Aligned_cols=125 Identities=12% Similarity=-0.016 Sum_probs=103.6
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.++++.|+..+++++.-.+..+ ..-+.++|++|..+...|+ +++|+..|++|+++ +|.+.
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~---~~~a~~~~~~G~~y~~~g~---~~~A~~~~~~al~l---~p~~~----------- 71 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTD---DERAQLLYERGVLYDSLGL---RALARNDFSQALAI---RPDMP----------- 71 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CCCCH-----------
T ss_pred cHHHHHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHhhcc---CCCCH-----------
Confidence 3456677777777765333222 3467899999999999999 99999999999999 65332
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
.++..+|.+|...|++++|+.+++.+.++ .+.++.+++..+.++...|++++|+..+...+...+
T Consensus 72 ---~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 136 (259)
T d1xnfa_ 72 ---EVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 136 (259)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---HHHhhhchHHHHHHHHHHhhhhhhHHHHH----HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence 27889999999999999999999999997 467888889999999999999999999998885444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9.1e-12 Score=118.38 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch--------hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE--------NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--------~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
..+++.|+.+|+.|+|++|+++|+.++.++|.... .......++.|+|.||+++|+|++|+++++++++++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34667999999999999999999999988774321 0235678899999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
++.+.+.++.++...|++++|+.+|+......+.++++...
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~ 135 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 135 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999999999999998878875544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=8.3e-11 Score=120.90 Aligned_cols=217 Identities=14% Similarity=0.060 Sum_probs=151.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
+.++..+|++++|+.+|.||.++...... ....+..|.++|.++...|+ +++|+..|++++++......
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~-~~~~a~~~~~~g~~y~~~~~---~~~A~~~~~~a~~~~~~~~~------- 112 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGN-EDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTHRGQ------- 112 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHhhHHhhhccc-------
Confidence 55677899999999999999998765433 23478899999999999999 99999999999999665321
Q ss_pred hhhhhhcHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 267 TTELKGLKFKTLRFISAIHL-QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl-~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
......++..++.+|. ..|++++|+.+++.+..+. +.
T Consensus 113 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~-------~~------------------------------- 150 (290)
T d1qqea_ 113 ----FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY-------AQ------------------------------- 150 (290)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-------HH-------------------------------
T ss_pred ----chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-------Hh-------------------------------
Confidence 1123457888888875 4588888888777664420 00
Q ss_pred chHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHH
Q 004720 346 PECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLA 425 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~ 425 (733)
...+
T Consensus 151 ----------------------------------------------------~~~~------------------------ 154 (290)
T d1qqea_ 151 ----------------------------------------------------DQSV------------------------ 154 (290)
T ss_dssp ----------------------------------------------------TTCH------------------------
T ss_pred ----------------------------------------------------cCch------------------------
Confidence 0000
Q ss_pred HhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004720 426 LFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYIT 505 (733)
Q Consensus 426 ~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~ 505 (733)
.....++-+.|..+.+.|+|++|+++|+.++...+.+...+......+.+.+.||+..++++.|.+.++
T Consensus 155 -----------~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~ 223 (290)
T d1qqea_ 155 -----------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (290)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 000001123688899999999999999999988776543334555678899999999999999999999
Q ss_pred HHHhhCC-ChHHH---HH--HHHHHHh--cCCHHHHHHHHHHHHhc
Q 004720 506 EAEKLEP-NIASA---FL--KFKIYLQ--KNDQEGAINQILAMTIC 543 (733)
Q Consensus 506 ~A~~ldp-~~~t~---~~--~~ki~l~--~gd~e~Al~~l~~~~~~ 543 (733)
++.+++| ...+. +. +...+-. .+.+++|+..|..+.++
T Consensus 224 ~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 9999998 33332 11 2222222 23478999988766555
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=2e-10 Score=118.01 Aligned_cols=237 Identities=12% Similarity=0.046 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
..-..+..+.++|+.+...|+|+.|..+|++|+++..... .. ......+...+.++...|++++|+.++.++
T Consensus 32 ~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~-----~~---~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a 103 (290)
T d1qqea_ 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG-----NE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT-----CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC-----CC---HHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence 3445578899999999999999999999999999865321 11 112356667788999999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHh-cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALS-KNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~-~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y 285 (733)
..+.+.... ....+.++.++|..+.. .++ +++|+.+|++|+++.+.... ......++..+|.+|
T Consensus 104 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~A~~l~~~~~~-----------~~~~~~~~~~la~~~ 168 (290)
T d1qqea_ 104 IQIFTHRGQ-FRRGANFKFELGEILENDLHD---YAKAIDCYELAGEWYAQDQS-----------VALSNKCFIKCADLK 168 (290)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHH
T ss_pred hHHhhhccc-chhHHHHHHHHHHhHhhHHHH---HHHHHHHHHHHHHHHHhcCc-----------hhhhhhHHHHHHHHH
Confidence 999887543 34467788899998865 589 99999999999998665321 223456899999999
Q ss_pred hccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhh
Q 004720 286 LQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAG 365 (733)
Q Consensus 286 l~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a 365 (733)
...|+|++|+.+++.+.... ...+..
T Consensus 169 ~~~g~y~~A~~~~~~~~~~~----~~~~~~-------------------------------------------------- 194 (290)
T d1qqea_ 169 ALDGQYIEASDIYSKLIKSS----MGNRLS-------------------------------------------------- 194 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHTT----SSCTTT--------------------------------------------------
T ss_pred HHcChHHHHHHHHHHHHHhC----ccchhh--------------------------------------------------
Confidence 99999999999998887632 111110
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH
Q 004720 366 AETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWN 445 (733)
Q Consensus 366 ~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~ 445 (733)
+. . ....+.+
T Consensus 195 ---------------------------~~--------~-----------------------------------~~~~~~~ 204 (290)
T d1qqea_ 195 ---------------------------QW--------S-----------------------------------LKDYFLK 204 (290)
T ss_dssp ---------------------------GG--------G-----------------------------------HHHHHHH
T ss_pred ---------------------------hh--------h-----------------------------------HHHHHHH
Confidence 00 0 0001123
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCC
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG--LSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~--l~~~~~A~e~~~~A~~ldp 512 (733)
.|..++..|+++.|...|+.++.++|.-.. ....++...+..+|.. .+.+++|+..|+++.++||
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~--sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQSEDPNFAD--SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCccc--hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 566677889999999999999998875432 2346778888888776 4679999999998888887
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.3e-11 Score=109.68 Aligned_cols=103 Identities=10% Similarity=-0.065 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
-+.|+.+++.|+|++|++.|+.++.+.|.+ +.++.++|.||.++|++++|+++++++++++| ++...+.+..
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 79 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 79 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-------hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHH
Confidence 358999999999999999999999998755 46899999999999999999999999999999 8999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
++...|++++|+.++++.....+.++++...
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 110 (117)
T d1elwa_ 80 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999998888875443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=1.9e-11 Score=127.80 Aligned_cols=279 Identities=8% Similarity=-0.140 Sum_probs=182.3
Q ss_pred ccCCc-chHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHH
Q 004720 144 DLKKY-DLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLAN 222 (733)
Q Consensus 144 ~~g~~-~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~ 222 (733)
+.|++ +.|..+++++++..|..+.. -.-+...+..+..........|++++|+.+++++....|.++.
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a----~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~------- 108 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATL----WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------- 108 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-------
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHH----HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH-------
Confidence 44444 79999999999876631100 0001111222222244556778899999999999999998774
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
++++.|..+...+.++ +++|+.++++++++ ++... ...+..++.++...+.+++|+.+++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~-~~~a~~~~~~al~~---~~~~~-------------~~~~~~~~~~~~~~~~~~~Al~~~~~~i 171 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPN-WARELELCARFLEA---DERNF-------------HCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (334)
T ss_dssp HHHHHHHHHHTCSSCC-HHHHHHHHHHHHHH---CTTCH-------------HHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HHHHhhHHHHHhcccc-HHHHHHHHHHHHhh---Cchhh-------------hhhhhHHHHHHHhccccHHHHHHHHHHH
Confidence 3677777766665433 89999999999998 54221 1134567889999999999999999998
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCc
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHV 382 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~ 382 (733)
++ ++.++++++.++.++...|++++|+..+...+...+.... .+... ..+++.+.
T Consensus 172 ~~----~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~--~~l~~~~~ 226 (334)
T d1dcea1 172 TR----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-------------------LVQNA--FFTDPNDQ 226 (334)
T ss_dssp TT----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-------------------HHHHH--HHHCSSCS
T ss_pred Hc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH-------------------HHHHH--HHhcchhH
Confidence 86 4677888899999999999999887776544421111111 11100 00111111
Q ss_pred hHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 004720 383 SAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEM 462 (733)
Q Consensus 383 ~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~ 462 (733)
. .....+.+ ...|+.... ..+.|..+...|++++|++.
T Consensus 227 a----~~~~~~~l--~~~~~~~~~------------------------------------~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 227 S----AWFYHRWL--LGRAEPLFR------------------------------------CELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp H----HHHHHHHH--HSCCCCSSS------------------------------------CCCCHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHH--HhCcchhhH------------------------------------HHHHHHHHHHHhhHHHHHHH
Confidence 0 01111111 111111100 01257777888999999999
Q ss_pred HHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 463 FEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 463 y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
|..++...| +...++..+|.+|..+|++++|+++|++|+++|| .......+...+
T Consensus 265 ~~~~~~~~p-------~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 265 LQELEPENK-------WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHCTTCH-------HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhhCc-------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 999987654 5567899999999999999999999999999999 544433333333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=1.4e-11 Score=128.81 Aligned_cols=264 Identities=9% Similarity=-0.041 Sum_probs=186.4
Q ss_pred HccC-HHHHHHHHHHHHhhhhcCchhHHHHHH---HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh
Q 004720 192 EVLE-QNLAITLLNRAKCLLFGLFEHYKSLAN---QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET 267 (733)
Q Consensus 192 ~~g~-~~~A~~~~~rA~~l~~~~~~~~~~La~---~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~ 267 (733)
..|+ .++|+.++++++.+.|.++...-.... .+...|......+. +++|+.++++++.. +|.+.
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~---~~~al~~~~~~l~~---~pk~~------ 107 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAAL---VKAELGFLESCLRV---NPKSY------ 107 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHH---HHHHHHHHHHHHHH---CTTCH------
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHH---HHHHHHHHHHHHHh---CCCcH------
Confidence 3344 489999999999999987754322222 23344556667777 89999999999988 54221
Q ss_pred hhhhhcHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHccCCCCCCCCCcH-HHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 268 TELKGLKFKTLRFISAIHLQK--GEYESVIKCVRVLREGSFDGGDHHASL-PVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 268 ~~~~el~~~~l~~La~~yl~~--~~~ekAl~~l~~a~~~~~~~~~~~p~~-~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
.+|..++.++... +++++|+.+++.+.... +..... .+..+.++...+.+++|+..+...+...|
T Consensus 108 --------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p 175 (334)
T d1dcea1 108 --------GTWHHRCWLLSRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (334)
T ss_dssp --------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred --------HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC----chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 2566677776555 46899999999888753 333333 36677788888999999999999986666
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERV 423 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v 423 (733)
.....|...+.+|...+. +.|...++. .+ .+..
T Consensus 176 ~~~~a~~~l~~~~~~~~~~~~A~~~~~~----------------------~~-----------------~~~~------- 209 (334)
T d1dcea1 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRL----------------------PE-----------------NVLL------- 209 (334)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSS----------------------CH-----------------HHHH-------
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------hH-----------------HhHH-------
Confidence 555565566665654443 222111110 00 0000
Q ss_pred HHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHH
Q 004720 424 LALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEY 503 (733)
Q Consensus 424 ~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~ 503 (733)
... .....+...+.+++|+..|..++...|.+.. .+.+++.++..++++++|++.
T Consensus 210 ----------~~~--------~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 210 ----------KEL--------ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF-------RCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp ----------HHH--------HHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS-------SCCCCHHHHHHHHHHHHHHHH
T ss_pred ----------HHH--------HHHHHHHHhcchhHHHHHHHHHHHhCcchhh-------HHHHHHHHHHHHhhHHHHHHH
Confidence 000 1233345667888999999999988775532 245678888999999999999
Q ss_pred HHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 504 ITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 504 ~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+.++++.+| ++.+.+.++.++...|++++|+++++++....+..++.
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y 312 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence 999999999 88999999999999999999999999999986655554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.25 E-value=8e-11 Score=109.67 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchh---------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVEN---------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~---------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
..|+.+|+.|+|.+|+..|+.++.+.+..... .+....++.|+|.||.++|++++|+++|++|++++| ++
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ 101 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV 101 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhh
Confidence 48999999999999999999999877633211 123456889999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL 551 (733)
.+.+.+..++...|++++|+.++++.....+.++++.
T Consensus 102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 102 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999988777643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.25 E-value=1.1e-10 Score=110.38 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCc--------hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDV--------ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~--------~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
..|+.+|+.|+|++|+..|+.++.+.+... ........++.|+|.||.++|++++|+++++++++++| ++.
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~ 99 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK 99 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH
Confidence 489999999999999999999997654221 11245677899999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+.+.+.+++...|++++|+++++++....+.++.+
T Consensus 100 a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~ 134 (168)
T d1kt1a1 100 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999998777763
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=8.3e-11 Score=122.81 Aligned_cols=207 Identities=9% Similarity=0.044 Sum_probs=149.3
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC-cHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG-EYESVIKCV 298 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~-~~ekAl~~l 298 (733)
-+.++.++|..+.+.+. +++|+..+++|+++ +|.+ ..+|.+++.++...+ ++++|+.++
T Consensus 42 ~~~a~~~~~~~~~~~e~---~~~Al~~~~~ai~l---nP~~--------------~~a~~~r~~~l~~l~~~~~eal~~~ 101 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDER---SERAFKLTRDAIEL---NAAN--------------YTVWHFRRVLLKSLQKDLHEEMNYI 101 (315)
T ss_dssp HHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHH---CCCC--------------hHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45678889999999999 99999999999999 6643 238999999998876 699999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLL 377 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll 377 (733)
+.+.++ ++.++.+++.++.++...|++++|+..+..++...|.....|.+.+.+|...+. +.|++.+++
T Consensus 102 ~~al~~----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~------ 171 (315)
T d2h6fa1 102 TAIIEE----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ------ 171 (315)
T ss_dssp HHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH------
T ss_pred HHHHHH----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH------
Confidence 999887 467888899999999999999999999999996666666677677776665555 555555543
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
.+ +..|.+..+|..++.++..+ ..+...++++
T Consensus 172 ----------------al--~~~p~n~~a~~~r~~~l~~~------------------------------~~~~~~~~~~ 203 (315)
T d2h6fa1 172 ----------------LL--KEDVRNNSVWNQRYFVISNT------------------------------TGYNDRAVLE 203 (315)
T ss_dssp ----------------HH--HHCTTCHHHHHHHHHHHHHT------------------------------TCSCSHHHHH
T ss_pred ----------------HH--HHCCccHHHHHHHHHHHHHc------------------------------cccchhhhhH
Confidence 33 34555554443322221111 1112234467
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+|++.|..++...|.+. .++.+++..+... .++++.+.++++.+++|
T Consensus 204 ~ai~~~~~al~~~P~~~-------~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 204 REVQYTLEMIKLVPHNE-------SAWNYLKGILQDR-GLSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHHHHHHHHHHSTTCH-------HHHHHHHHHHTTT-CGGGCHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHhCCCch-------HHHHHHHHHHHhc-ChHHHHHHHHHHHHhCC
Confidence 88888888888877553 3456666655443 35778888888888877
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=5.7e-11 Score=111.03 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
.+|+.+|+.|+|++|+++|++++.+.|.+ +..+.++|.||+.+|++++|+++|++|++++| ++...+.+..+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhh-------hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence 38999999999999999999999997744 57899999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
+...|++++|+++++.+....+.++++...
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~ 117 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMK 117 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999999999998877775443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=2.3e-11 Score=116.77 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=87.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|+.+|+.|+|++|+++|+.++.+.|.+ +.++.++|.||.++|++++|+++|++|++++| ++.+.+.++.+
T Consensus 9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 9 EQGNRLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 58999999999999999999999998744 57899999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 004720 524 YLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~ 544 (733)
+...|++++|+.++++.....
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=8.2e-10 Score=115.06 Aligned_cols=195 Identities=7% Similarity=-0.055 Sum_probs=156.1
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhhh
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVL-EQNLAITLLNRAKCLLF 211 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g-~~~~A~~~~~rA~~l~~ 211 (733)
..+-..|..+.+.+.++.|+.+|++|+++.|.- .....+|+.+....| ++++|+.++++++.+.|
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~--------------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p 109 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC--------------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 333345888999999999999999999987631 245667788888776 59999999999999999
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..+. +++++|..+...|+ +++|+.++.+++++ +|.+. .+|.++|.++...+++
T Consensus 110 ~~~~-------a~~~~~~~~~~l~~---~~eAl~~~~kal~~---dp~n~--------------~a~~~~~~~~~~~~~~ 162 (315)
T d2h6fa1 110 KNYQ-------VWHHRRVLVEWLRD---PSQELEFIADILNQ---DAKNY--------------HAWQHRQWVIQEFKLW 162 (315)
T ss_dssp TCHH-------HHHHHHHHHHHHTC---CTTHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHHHTCC
T ss_pred hhhh-------HHHHHhHHHHhhcc---HHHHHHHHhhhhhh---hhcch--------------HHHHHHHHHHHHHHhh
Confidence 8764 58899999999999 99999999999999 65332 3899999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCC------hHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhh
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGR------YNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAG 365 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~------~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a 365 (733)
++|+.+++.+.+. ++.++++++.++.++.+.+. +++|+..+...+...|.....|.....++...+...+
T Consensus 163 ~~Al~~~~~al~~----~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~ 238 (315)
T d2h6fa1 163 DNELQYVDQLLKE----DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 238 (315)
T ss_dssp TTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHHHHHHHHHHH----CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHH
Confidence 9999999999987 46778888889988888776 4689999988886666666777666666654443445
Q ss_pred HHHHHHH
Q 004720 366 AETAKGV 372 (733)
Q Consensus 366 ~~~lk~~ 372 (733)
.+.++.+
T Consensus 239 ~~~~~~~ 245 (315)
T d2h6fa1 239 PNLLNQL 245 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1e-09 Score=109.09 Aligned_cols=204 Identities=12% Similarity=0.020 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
++++.|..++..|+|++|++.|+.++.+.|.+ +.+++++|.||..+|++++|++.|+++++++| ++.+.+.+
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 111 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDM-------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-------HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence 55679999999999999999999999998754 46799999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT 600 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~ 600 (733)
..++...|++++|++.+++..+..+.++....... .+....+......++.......... +. ...++. ...
T Consensus 112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~----~~~ 182 (259)
T d1xnfa_ 112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKE---QW-GWNIVE----FYL 182 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCC---ST-HHHHHH----HHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHH-HHHHHhhhHHHHHHHHHHhhccchh---hh-hhhHHH----HHH
Confidence 99999999999999999999988766555333222 2222223333333443333323222 21 111111 111
Q ss_pred hhcCChhHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHccccCCc
Q 004720 601 QETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQ 680 (733)
Q Consensus 601 ~~~~~~~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~ 680 (733)
.. .... ..+..+...... ......-+...-+|+|.-....++++.+...|..+.. ..|.+-
T Consensus 183 ~~-~~~~---~~~~~~~~~~~~------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~ 243 (259)
T d1xnfa_ 183 GN-ISEQ---TLMERLKADATD------------NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVHNF 243 (259)
T ss_dssp TS-SCHH---HHHHHHHHHCCS------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCTTC
T ss_pred HH-HHHH---HHHHHHHHHHHH------------hhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCH
Confidence 00 0111 112222221111 0111112223346889888888999999999998876 677653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.12 E-value=2.1e-10 Score=108.28 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=94.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCc---------hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDV---------ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~---------~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
+.|+.+|+.|+|++|+++|+.++.+.+... ...+..+.++.|+|.||.++|+|++|+++|++|++++| ++
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~ 111 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 111 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
Confidence 479999999999999999999987543110 11357888999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL 551 (733)
.+.+.+..++...|++++|++++++.....+.++++.
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~ 148 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 148 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999987777643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.1e-09 Score=105.85 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
-+|++|..++..|+|+.|++.|+.. .+ ..+++++|+|.||..+|++++|+++|++|+++|| ++...+.+
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~-------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~ 76 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV---QD-------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 76 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---SS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc---CC-------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 5899999999999999999999863 22 2356899999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTT----------------DFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~----------------~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
..++.+.|++++|++.+++...+...++ +.+.--+......|+.+.|+..|+.-++
T Consensus 77 g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999876543211 2222223445567888888877776666
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.5e-10 Score=97.50 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
++.|..+|+.|+|++|++||+.|+...|.+....++.+.++.++|.||.++|++++|+++++++++++| ++.+...+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 468999999999999999999999887755433468899999999999999999999999999999999 7877666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=8.2e-10 Score=99.42 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=97.4
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
+.+......|+.++..|+|+.|+.||++|+++.|. . ..++.+++.++...|+++.|+.++.+++++
T Consensus 2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~--------~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--------N------MTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------c------HHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 35667788999999999999999999999997542 1 357788899999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+|..+.....++.+|+++|..+...++ +++|+.+|++++..
T Consensus 68 ~~~~~~~~~~~a~~~~~lg~~~~~~~~---~~~A~~~~~kal~~ 108 (128)
T d1elra_ 68 GRENREDYRQIAKAYARIGNSYFKEEK---YKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhc
Confidence 999888888999999999999999999 99999999999987
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.7e-09 Score=95.87 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH-------H
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA-------S 516 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~-------t 516 (733)
+.|+.+|..|+|++|++.|+.++.+.|.+ ..++.++|.||.++|+|++|+++|++|+.++| ++. +
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc-------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 48999999999999999999999998754 45899999999999999999999999999998 654 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.+.+..++...+++++|++++++...... +++.+..
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~ 117 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKK 117 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHH
Confidence 44566777788999999999988877644 5665443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.95 E-value=1.7e-09 Score=94.89 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|..+++.|+|++|+.+|+.++...|.+ ..++.++|.||.+.|++++|+.+++++++++| ++...+.+..+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPER-------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccccccc-------chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence 58999999999999999999999987744 57899999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILAMT 541 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~ 541 (733)
+...|++++|+++++++.
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 999999999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=7.3e-09 Score=96.25 Aligned_cols=106 Identities=18% Similarity=0.095 Sum_probs=93.1
Q ss_pred CChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 004720 124 IPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLL 203 (733)
Q Consensus 124 ~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~ 203 (733)
+.+..+..+......|+.+++.|+|+.|..+|++|++..|. . ..++..++.+++..|++++|+.++
T Consensus 2 ~~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~--------~------~~~~~~lg~~~~~~~~~~~A~~~~ 67 (159)
T d1a17a_ 2 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS--------N------AIYYGNRSLAYLRTECYGYALGDA 67 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------C------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh--------h------hhhhhhhHHHHHhccccchHHHHH
Confidence 34555678888889999999999999999999999987642 1 356777899999999999999999
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 204 NRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 204 ~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
.+++++.|..+. +++++|.++...|+ +++|+.+|++++.+
T Consensus 68 ~kal~~~p~~~~-------a~~~~g~~~~~~g~---~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 68 TRAIELDKKYIK-------GYYRRAASNMALGK---FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHcccchH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHc
Confidence 999999998764 58899999999999 99999999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.92 E-value=2.4e-09 Score=99.43 Aligned_cols=123 Identities=10% Similarity=0.011 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCC--hHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 004720 125 PSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISD--SDERKLLLDINIARSRTAWEVLEQNLAITL 202 (733)
Q Consensus 125 ~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~--~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~ 202 (733)
.+.-+..+......|+.+++.|+|..|+.+|++|+++++......... .......+.+++++|.++...|+++.|+.+
T Consensus 10 ~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~ 89 (153)
T d2fbna1 10 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 89 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhh
Confidence 355566778888999999999999999999999998765311100000 112223456788899999999999999999
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 203 LNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 203 ~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+|+.+.|...+ +++++|.++...|+ +++|+.+|++++++ +|.+
T Consensus 90 ~~~al~~~p~~~k-------a~~~~g~~~~~lg~---~~~A~~~~~~al~l---~P~n 134 (153)
T d2fbna1 90 ASKVLKIDKNNVK-------ALYKLGVANMYFGF---LEEAKENLYKAASL---NPNN 134 (153)
T ss_dssp HHHHHHHSTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---STTC
T ss_pred hhccccccchhhh-------hhHHhHHHHHHcCC---HHHHHHHHHHHHHh---CCCC
Confidence 9999999998764 59999999999999 99999999999999 6644
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.1e-08 Score=94.50 Aligned_cols=124 Identities=10% Similarity=0.084 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHH
Q 004720 217 YKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIK 296 (733)
Q Consensus 217 ~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~ 296 (733)
....+..+.+.|..++..|+ |++|+.+|++|+++++...... .........++..++.++|.||+..|+|++|+.
T Consensus 9 k~~~a~~l~~~G~~~~~~~~---~~~Ai~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~ 83 (170)
T d1p5qa1 9 KLEQSTIVKERGTVYFKEGK---YKQALLQYKKIVSWLEYESSFS--NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 83 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhccccc--hHHHhhhchhHHHHHHHHHHHHHhhhhcccccc
Confidence 34567788899999999999 9999999999999966543222 122233356677789999999999999999999
Q ss_pred HHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 297 CVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 297 ~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
+++.+..+ ++.++.+++..+.++...|++++|+..+...+...|....+
T Consensus 84 ~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~ 132 (170)
T d1p5qa1 84 SCNKALEL----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132 (170)
T ss_dssp HHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred hhhhhhhc----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 99999987 56788999999999999999999999999998544444444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.89 E-value=3.2e-08 Score=92.87 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
...+..+...|..++..|+ |.+|+..|++|+.+++...... .........+...++.++|.||...|+|++|+.+
T Consensus 12 ~~~a~~~~e~G~~~~~~~~---~~~A~~~Y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~ 86 (168)
T d1kt1a1 12 LEQAAIVKEKGTVYFKGGK---YVQAVIQYGKIVSWLEMEYGLS--EKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 86 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCCSCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhccc--hhhhhhcchhHHHHHHhHHHHHHHhhhcccchhh
Confidence 3457778899999999999 9999999999999976543221 1222334566778899999999999999999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
++.+..+ ++.++.+++.++.++...|++++|+..+...+...|....+
T Consensus 87 ~~~al~l----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~ 134 (168)
T d1kt1a1 87 CDKALGL----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134 (168)
T ss_dssp HHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred hhhhhhc----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999987 56788899999999999999999999999998544444334
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.88 E-value=1.5e-08 Score=95.17 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCCh--HHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDS--DERKLLLDINIARSRTAWEVLEQNLAITLL 203 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~--~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~ 203 (733)
+..+..+......|+.|+..|+|..|+.+|++|+.+.+.......... .-......++.++|.++...|++++|+.++
T Consensus 21 ~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~ 100 (169)
T d1ihga1 21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 100 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhh
Confidence 345566677788999999999999999999999998763221110000 001124567888999999999999999999
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 204 NRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 204 ~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.+|+.++|..++ +++++|.++...|+ +++|+..|++++++ +|.+
T Consensus 101 ~~al~~~p~~~~-------a~~~~g~~~~~l~~---~~~A~~~~~~al~l---~p~n 144 (169)
T d1ihga1 101 LEALEIDPSNTK-------ALYRRAQGWQGLKE---YDQALADLKKAQEI---APED 144 (169)
T ss_dssp HHHHTTCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC
T ss_pred hhhhhhhhhhhh-------HHHhHHHHHHHccC---HHHHHHHHHHHHHh---CCCC
Confidence 999999998764 58999999999999 99999999999999 6543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.1e-08 Score=88.39 Aligned_cols=104 Identities=13% Similarity=-0.038 Sum_probs=84.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
|-.++..+...|++++|+.+|.+++.++|..+. +++++|.+++..|+ +++|+..+++++++ +|.+.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~-------~~~~~a~~~~~~~~---~~~A~~~~~~al~~---~p~~~- 71 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV-------LYSNRSAAYAKKGD---YQKAYEDGCKTVDL---KPDWG- 71 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTCH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh-------hhhccccccccccc---ccccchhhhhHHHh---ccchh-
Confidence 345678888999999999999999999888764 58888999999999 99999999999998 54322
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHH
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPV 317 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~ 317 (733)
..|..+|.+|...|+|++|+.+++.+.+. .+.+|....
T Consensus 72 -------------~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~ 109 (117)
T d1elwa_ 72 -------------KGYSRKAAALEFLNRFEEAKRTYEEGLKH----EANNPQLKE 109 (117)
T ss_dssp -------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHH
T ss_pred -------------hHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 27888999999999999999999998875 345555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=2.6e-08 Score=95.88 Aligned_cols=142 Identities=15% Similarity=0.037 Sum_probs=109.2
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|..++..|+|+.|+.+|+++.+ +. -+++..++.++..+|++++|+.+|++|++++|..+
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i~~-----------~~------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~ 70 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAVQD-----------PH------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 70 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS-----------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCC-----------CC------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh
Confidence 33569999999999999999965321 11 13566789999999999999999999999999876
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekA 294 (733)
. +++++|.++...|+ |++|+..|++|+.....+..- .+..........-..++.++|.+|...|++++|
T Consensus 71 ~-------a~~~~g~~~~~~g~---~~~A~~~~~kAl~~~~~n~~~-~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A 139 (192)
T d1hh8a_ 71 V-------AYFQRGMLYYQTEK---YDLAIKDLKEALIQLRGNQLI-DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 139 (192)
T ss_dssp H-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHTTTTCSEE-ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred h-------hHHHHHHHHHhhcc---HHHHHHHHHHHHHhCccCchH-HHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH
Confidence 4 59999999999999 999999999999874433210 011000000111245889999999999999999
Q ss_pred HHHHHHHHcc
Q 004720 295 IKCVRVLREG 304 (733)
Q Consensus 295 l~~l~~a~~~ 304 (733)
+..++.+.+.
T Consensus 140 ~~~l~~A~~~ 149 (192)
T d1hh8a_ 140 EEQLALATSM 149 (192)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999999874
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.74 E-value=1.9e-08 Score=93.20 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCch-----hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-----
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVE-----NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N----- 513 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~-----~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~----- 513 (733)
..|..+|..|+|++|++.|++++.+.|...+ .....+.++.|++.||.++|+|++|.+.+++++++.| .
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 4799999999999999999999998775422 1235688999999999999999999999999998743 1
Q ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 514 ------IASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 514 ------~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
....+.+..++...|++++|+++|++...+.
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1246778999999999999999999988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.74 E-value=1.3e-07 Score=87.49 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=96.6
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+...+..|+..+..|+|+.|+..|++|+++.+...... ...........+..++.+++..|++++|+.++++++.+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~--~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhh--hcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 345566679999999999999999999999876422110 011111122456688999999999999999999999987
Q ss_pred hc----CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 211 FG----LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 211 ~~----~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
+. .+......+.+++++|..+...|+ +++|+.+|++|+++.++...
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~---~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCS
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHhhHHhhc
Confidence 74 334456677889999999999999 99999999999999776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=1.4e-08 Score=96.71 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=88.2
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
...+..|+.+++.|+|+.|+.+|++|++..|. . ..++..++.++...|+++.|+.++++|+.++|.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~--------~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~ 70 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL--------V------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence 34567899999999999999999999998642 1 367788899999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEK 256 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~ 256 (733)
.+. .++++|..+...|+ +++|+.+|++|+++...
T Consensus 71 ~~~-------a~~~lg~~~~~l~~---~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 71 SVK-------AHFFLGQCQLEMES---YDEAIANLQRAYSLAKE 104 (201)
T ss_dssp CHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred cHH-------HHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcc
Confidence 765 48899999999999 99999999999998543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=5.8e-08 Score=107.26 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.+-+.|..+...|+|++|+.||++|+.+.|.+ +..|.++|.+|...|++.+|+.+|.+|+.++| .+.+...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL 226 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34468999999999999999999999998754 46799999999999999999999999999998 78887777
Q ss_pred HHHHHh
Q 004720 521 FKIYLQ 526 (733)
Q Consensus 521 ~ki~l~ 526 (733)
.+++..
T Consensus 227 ~~~~~~ 232 (497)
T d1ya0a1 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=6e-08 Score=86.41 Aligned_cols=101 Identities=10% Similarity=-0.003 Sum_probs=86.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCC-C--hHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS---LIDRAQEYITEAEKLEP-N--IASAFL 519 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~---~~~~A~e~~~~A~~ldp-~--~~t~~~ 519 (733)
.++.+...++|++|.+.|+.++...|.+ ..+++|+|.|+++.+ ++++|++.++++++.+| + +.+.|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVS-------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 5678889999999999999999998855 357899999999755 55679999999999998 3 347789
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
++.+|.+.|++++|+++++++.+..+.++..+.+
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 9999999999999999999999998877764433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.2e-07 Score=84.43 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=85.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
+...+..+++++|+..|++++.+.|.++. +++|+|.++...++.+.+.+|+..|++++.. ++
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~-------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~---~~-------- 67 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKS-------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GS-------- 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHH-------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SC--------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---cC--------
Confidence 56777999999999999999999998775 5899999998755411166788888888765 33
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHH
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKA 322 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~i 322 (733)
.+.+..++.+||.+|...|+|++|+.+++.+.++ +|.++.+..++..|
T Consensus 68 ----~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~----~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 68 ----KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----EPQNNQAKELERLI 115 (122)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----CcCCHHHHHHHHHH
Confidence 1224458999999999999999999999999986 45555555444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=3.1e-07 Score=77.64 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=67.2
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
++-||++|+.++..|+ |.+|+.||++|+++.+..+.. ...+..++.+||.+|...|+|++|+.+++.
T Consensus 5 addc~~lG~~~~~~g~---y~~A~~~~~~Al~~~~~~~~~----------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 5 AEDSFELGKVAYTEAD---YYHTELWMEQALRQLDEGEIS----------TIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCC----------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHhhhhcc----------CccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 3459999999999999 999999999999996654321 123567999999999999999999999999
Q ss_pred HHccCCCCCCCCCcHHHHH
Q 004720 301 LREGSFDGGDHHASLPVLA 319 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk 319 (733)
+.++ +|.||.+....
T Consensus 72 aL~l----~P~~~~a~~Nl 86 (95)
T d1tjca_ 72 LLEL----DPEHQRANGNL 86 (95)
T ss_dssp HHHH----CTTCHHHHHHH
T ss_pred HHHh----CcCCHHHHHHH
Confidence 9997 46777655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.42 E-value=2.9e-05 Score=76.72 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=68.8
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc----cCcHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ----KGEYESVIKC 297 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~----~~~~ekAl~~ 297 (733)
..++++|..++.++| +++|++||++|.+. + +. .....||.+|.. ..++.+|...
T Consensus 3 ~~~~~lG~~~~~~~d---~~~A~~~~~kAa~~---g--~~--------------~A~~~Lg~~y~~G~~~~~d~~~a~~~ 60 (265)
T d1ouva_ 3 KELVGLGAKSYKEKD---FTQAKKYFEKACDL---K--EN--------------SGCFNLGVLYYQGQGVEKNLKKAASF 60 (265)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHT---T--CH--------------HHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHC---C--CH--------------HHHHHHHHHHHcCCCcchhHHHHHHh
Confidence 368999999999999 99999999999775 2 11 257778999976 4589999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhc----CChHHHHHHHHHhhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGL----GRYNEAELELRGMVE 341 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~----g~~deAi~~l~~~l~ 341 (733)
+..+.. ..+|...+..+.++... ++.+.|...++..+.
T Consensus 61 ~~~a~~------~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~ 102 (265)
T d1ouva_ 61 YAKACD------LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 102 (265)
T ss_dssp HHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hccccc------ccccchhhccccccccccccchhhHHHHHHHhhhhh
Confidence 988876 34666665555555442 456788888776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.40 E-value=1e-06 Score=76.65 Aligned_cols=94 Identities=14% Similarity=-0.046 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVA 560 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~ 560 (733)
...+++|.++.+.|++++|+..++++++.+| ++...+.+..++.+.|++++|+.++++.....+.+++.+..-+.....
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 3457899999999999999999999999999 899999999999999999999999999999988888877666777888
Q ss_pred cCCHHHHHHHHHHHH
Q 004720 561 CQALSVAVAALSNLL 575 (733)
Q Consensus 561 ~~~~~~a~~aL~~Ll 575 (733)
.|+.+.|++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 889999998887654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.9e-06 Score=94.76 Aligned_cols=96 Identities=15% Similarity=-0.047 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|..+.+.|++++|+..|..++.+. ...++.++|..+...+++++|+.+|++|++++| +...++.++.+
T Consensus 125 ~lg~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 125 QLGIISNKQTHTSAIVKPQSSSCSYI---------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp ------------------CCHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HhHHHHHhCCCHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 47899999999999999999998653 346789999999999999999999999999999 88999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
+...|++.+|+.+|.+...+.+..++
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~ 221 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999998887654443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=4.5e-05 Score=77.50 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=129.7
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 443 LWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 443 lW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
+|. .+....+.|+++.|...|+.++...|.+. ..++...+......|++++|++++.+|++..| ........
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~ 174 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 444 56777889999999999999998877542 35677888888899999999999999999999 55555444
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHH
Q 004720 521 FKI-YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTIL 599 (733)
Q Consensus 521 ~ki-~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~ 599 (733)
+.+ +-..|+.+.|...++.+....+.++++...-+......|+.+.|+..++..+.....+ |.....+....++.
T Consensus 175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~---~~~~~~iw~~~~~f- 250 (308)
T d2onda1 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP---PEKSGEIWARFLAF- 250 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC---GGGCHHHHHHHHHH-
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHH-
Confidence 444 3446899999999999998888889988888888889999999999999888854433 32222222222222
Q ss_pred HhhcCChhHHHHHHHHHHHHhhh
Q 004720 600 TQETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 600 ~~~~~~~~~~l~~~~~A~~~l~~ 622 (733)
-...|+.+.+.+.++++.+..++
T Consensus 251 E~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 251 ESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHHCcc
Confidence 24469999999999999887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=5.7e-05 Score=76.75 Aligned_cols=231 Identities=11% Similarity=0.001 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCC----CHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 196 QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETN----SLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 196 ~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~----~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
...+...|+||+...|..|+.-..-+.-+..-|+.....++.. .+++|...|++|++.+ .+ . .
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~--~p-------~----~ 98 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LK-------K----N 98 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--TT-------T----C
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc--CC-------C----C
Confidence 3456778999999888777532222222222344444444400 0344444555554421 01 0 0
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc-HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS-LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~-~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ 350 (733)
...+...+..+...|++++|...++.+.+.. +.++. ++...+..+...|++++|+..+...+...+....++
T Consensus 99 ---~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~----~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~ 171 (308)
T d2onda1 99 ---MLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS----SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred ---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Confidence 1256666777778888888888888887642 33333 334555666666677776666655543322222221
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
..
T Consensus 172 ~~------------------------------------------------------------------------------ 173 (308)
T d2onda1 172 VT------------------------------------------------------------------------------ 173 (308)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 11
Q ss_pred hhHHHhhHHHHHHHHHHHH-HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 431 AAAKERIAMHAVLWNCASI-LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~-~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
.|.. +...|+++.|...|+.++..+|.+ ..+....+....+.|++++|+.+|++|++
T Consensus 174 ---------------~a~~e~~~~~~~~~a~~i~e~~l~~~p~~-------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 174 ---------------AALMEYYCSKDKSVAFKIFELGLKKYGDI-------PEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp ---------------HHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHhccCHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1111 223466777777777777665533 34556666677777777777777777777
Q ss_pred hCC-ChHH---HHHHHHH-HHhcCCHHHHHHHHHHHHhccCC
Q 004720 510 LEP-NIAS---AFLKFKI-YLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 510 ldp-~~~t---~~~~~ki-~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
..| ++.- .+..|.- -..-|+.+.+.+.++++....+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 655 4321 1211111 12347777777777777665543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.18 E-value=8.7e-06 Score=76.93 Aligned_cols=99 Identities=6% Similarity=-0.050 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCch----h-----------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVE----N-----------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~----~-----------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
+.|..++..|++++|++.|..++.+++.+.. + ......++.+++.+++.+|++++|+++++++++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 95 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 95 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4899999999999999999999998763310 0 123457789999999999999999999999999
Q ss_pred hCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 510 LEP-NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 510 ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
++| +...+..+..++...|++++|++.|+.+...
T Consensus 96 ~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 96 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999 8999999999999999999999999988553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.17 E-value=1.9e-06 Score=78.55 Aligned_cols=94 Identities=17% Similarity=0.054 Sum_probs=78.4
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhhCC-ChHHH
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL----------SLIDRAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l----------~~~~~A~e~~~~A~~ldp-~~~t~ 517 (733)
.+.+.+.|++|++.|+.++.+.|.+ +.++.++|.++..+ +.+++|++.|++|++++| ++.+.
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~-------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~ 78 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV 78 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcc-------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 3456778999999999999998855 46788999998855 556899999999999999 89999
Q ss_pred HHHHHHHHhcC-----------CHHHHHHHHHHHHhccCCChH
Q 004720 518 FLKFKIYLQKN-----------DQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 518 ~~~~ki~l~~g-----------d~e~Al~~l~~~~~~~~~~~~ 549 (733)
+.+..+|...| ++++|++++++...+.+.++.
T Consensus 79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~ 121 (145)
T d1zu2a1 79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121 (145)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence 99999887654 468899999999888776554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.91 E-value=1.2e-05 Score=72.97 Aligned_cols=94 Identities=9% Similarity=-0.008 Sum_probs=69.2
Q ss_pred HHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHH---HHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKS---ALSKNETNSLNDALKLMNEALELCEKGLGEARTREET 267 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~---~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~ 267 (733)
-+.+.|++|+..+++++.++|.+++..-.++.+|+.++.- .-..+. +++|+..|++|+++ +|.+.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~---~~~Ai~~~~kAl~l---~P~~~------ 75 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM---IQEAITKFEEALLI---DPKKD------ 75 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH---HHHHHHHHHHHHHH---CTTCH------
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHH---HHHHHHHHHHHHHh---cchhh------
Confidence 3678899999999999999999887644444444443321 113355 78999999999999 65332
Q ss_pred hhhhhcHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHcc
Q 004720 268 TELKGLKFKTLRFISAIHLQKG-----------EYESVIKCVRVLREG 304 (733)
Q Consensus 268 ~~~~el~~~~l~~La~~yl~~~-----------~~ekAl~~l~~a~~~ 304 (733)
.++.++|.+|..+| .|++|+.+++.+..+
T Consensus 76 --------~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 76 --------EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp --------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 27888999987654 478899999888875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.73 E-value=0.0074 Score=58.53 Aligned_cols=224 Identities=10% Similarity=-0.067 Sum_probs=129.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHHHHh
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECIWVS 352 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~~ls 352 (733)
.+..||..+...++|++|+++++.+.+. .++.+.+..+.++.. ..++..|...+........ + ..+..
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~-~a~~~ 75 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S-NGCHL 75 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c-chhhc
Confidence 6888999999999999999999999763 367777888888876 3577888888876653222 2 22233
Q ss_pred HHHHHHHhch-----hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004720 353 AVEAYFQAAG-----TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF 427 (733)
Q Consensus 353 ~~~ly~~~~~-----~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~ 427 (733)
++.++..... +.++..++.... .-.+ .....+..........+.+. ..+..... .
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~----~g~~--~a~~~l~~~~~~~~~~~~~~----~~a~~~~~--------~-- 135 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACD----LKYA--EGCASLGGIYHDGKVVTRDF----KKAVEYFT--------K-- 135 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCH--HHHHHHHHHHHHCSSSCCCH----HHHHHHHH--------H--
T ss_pred cccccccccccchhhHHHHHHHhhhhh----hhhh--hHHHhhcccccCCCcccchh----HHHHHHhh--------h--
Confidence 3444432211 334444442211 1110 11111100000001111110 00000000 0
Q ss_pred hcchhHHHhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHH
Q 004720 428 VGDAAAKERIAMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDR 499 (733)
Q Consensus 428 ~g~~~~~~~~~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~ 499 (733)
...... .....+.|..++. ..+...+..|++.+.+. .....++++|.+|.. .+++++
T Consensus 136 ----~~~~~~--~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~---------g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 136 ----ACDLND--GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---------KDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp ----HHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred ----hhcccc--cchhhhhhhhhccCCCcccccccchhhhhccccc---------cccccccchhhhcccCcccccchhh
Confidence 000000 0011124555554 67788888898887642 234578899999987 679999
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 004720 500 AQEYITEAEKLEPNIASAFLKFKIYLQ----KNDQEGAINQILAMTICL 544 (733)
Q Consensus 500 A~e~~~~A~~ldp~~~t~~~~~ki~l~----~gd~e~Al~~l~~~~~~~ 544 (733)
|+.+|.+|.+.. ++...+.+..+|.. ..|.++|++.+++.....
T Consensus 201 A~~~~~~aa~~g-~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 201 ALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhHhhhhccc-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 999999987764 56677788888875 448889999998876653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.68 E-value=0.00023 Score=66.73 Aligned_cols=105 Identities=7% Similarity=-0.106 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc--h-------------hHHHHHHHHHHHhHHHHhcCCCCCHHHH
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF--E-------------HYKSLANQYLTFAKSALSKNETNSLNDA 243 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~--~-------------~~~~La~~~~~~G~~~~~~~~~~~~e~A 243 (733)
.|+-+..++..+...|+++.|+..|.+|+.+.+..+ . .......++.+.|..++..|+ +++|
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~---~~~A 86 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR---ASAV 86 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---chHH
Confidence 477888888999999999999999999999876421 1 012234566788999999999 9999
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 244 LKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 244 ~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+.++++++.+ +|.+. ..++.|+.+|...|++++|+..|+.+..
T Consensus 87 l~~~~~al~~---~P~~e--------------~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 87 IAELEALTFE---HPYRE--------------PLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHH---STTCH--------------HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCccH--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999 66432 3899999999999999999999987754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=3.7e-05 Score=77.07 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=92.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
+..+++.|++++|+..|+.++...|.+ +.+..+++.+|...|++++|.+.++++.+++| +.........++.
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d-------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKD-------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 75 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 566789999999999999999998755 46789999999999999999999999999999 6666665656655
Q ss_pred hcCCHHHHHHHHHHHHhccCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 526 QKNDQEGAINQILAMTICLDFTT--DFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~~~~--~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
..+..+++.......... ...+ ..+.+.+..+...|+.+.|...++.+.+...
T Consensus 76 a~~~~~~a~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 76 AAQARKDFAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HHHHHHHHTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred hccccHHHHHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 555555444322111111 1122 2444456677788999999999999988543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.18 E-value=0.00014 Score=72.77 Aligned_cols=125 Identities=8% Similarity=-0.046 Sum_probs=89.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
|+.-++.+|+++.|+..+++++...|.++.. ++++|..+...|+ +++|+..|+++.++ +|.+.
T Consensus 2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~a-------r~~La~lL~~~G~---~e~A~~~l~~a~~l---~P~~~---- 64 (264)
T d1zbpa1 2 QWKNALSEGQLQQALELLIEAIKASPKDASL-------RSSFIELLCIDGD---FERADEQLMQSIKL---FPEYL---- 64 (264)
T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHH-------HHHHHHHHHHHTC---HHHHHHHHHHHHHH---CGGGH----
T ss_pred hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCcH----
Confidence 4667889999999999999999999998754 7788888889999 99999999999999 54221
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
..+..++.++...+..+++........ -..+|. ..++.+.++...|++++|+..+......
T Consensus 65 ----------~~~~~l~~ll~a~~~~~~a~~~~~~~~------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 65 ----------PGASQLRHLVKAAQARKDFAQGAATAK------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTSCCCEE------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhccccHHHHHHhhhhh------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 144555666555544444332211111 112332 3377788889999999999999887743
Q ss_pred c
Q 004720 343 K 343 (733)
Q Consensus 343 ~ 343 (733)
.
T Consensus 129 ~ 129 (264)
T d1zbpa1 129 R 129 (264)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.0027 Score=55.28 Aligned_cols=74 Identities=19% Similarity=0.138 Sum_probs=57.4
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHH
Q 004720 444 WNCASILFRS---KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFL 519 (733)
Q Consensus 444 W~~g~~~~k~---~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~ 519 (733)
|+.|....+. .+.++++..++..+...|. +...+++++|.+|.++|+|++|.++++++++++| +.....+
T Consensus 39 F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~------~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 39 FNYAWGLIKSTDVNDERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 3455555544 4567999999998875542 3457899999999999999999999999999999 7766655
Q ss_pred HHHH
Q 004720 520 KFKI 523 (733)
Q Consensus 520 ~~ki 523 (733)
.-.|
T Consensus 113 ~~~I 116 (124)
T d2pqrb1 113 KSMV 116 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.47 E-value=0.065 Score=46.30 Aligned_cols=108 Identities=12% Similarity=0.010 Sum_probs=77.2
Q ss_pred cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhc
Q 004720 194 LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGL 273 (733)
Q Consensus 194 g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el 273 (733)
.|+++|+.++.|+.+.. .+. .++++|. ....+ +++|++||+++.+. +. .
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~-------a~~~l~~--~~~~~---~~~a~~~~~~aa~~---g~--~------------ 55 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMF-------GCLSLVS--NSQIN---KQKLFQYLSKACEL---NS--G------------ 55 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTT-------HHHHHHT--CTTSC---HHHHHHHHHHHHHT---TC--H------------
T ss_pred cCHHHHHHHHHHHHHCC--Chh-------hhhhhcc--ccccC---HHHHHHHHhhhhcc---cc--h------------
Confidence 37889999999998653 332 2555553 23455 89999999999875 21 1
Q ss_pred HHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhc----CChHHHHHHHHHhh
Q 004720 274 KFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGL----GRYNEAELELRGMV 340 (733)
Q Consensus 274 ~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~----g~~deAi~~l~~~l 340 (733)
.....|+..|.. ..++++|+++++.+-+. .+|.+.+..+.++... .++.+|+..+.+..
T Consensus 56 --~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 56 --NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp --HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred --hhhhhHHHhhhhccccchhhHHHHHHHhhhhcc------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 156678888875 24799999999998763 4677777777777663 46788888877654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.54 E-value=0.15 Score=43.76 Aligned_cols=83 Identities=11% Similarity=0.045 Sum_probs=64.0
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHh-
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQ- 526 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~- 526 (733)
..+++++|++||+.+-+. +....+++++..|.. ..++++|.++++++-+.. ++...+.+..+|..
T Consensus 35 ~~~~~~~a~~~~~~aa~~---------g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~Lg~~y~~G 104 (133)
T d1klxa_ 35 SQINKQKLFQYLSKACEL---------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-DQDGCLILGYKQYAG 104 (133)
T ss_dssp TTSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHhhhhcc---------cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-cchHHHHHHHHHHcC
Confidence 457889999999998653 334568889988886 578999999999986643 56677777777776
Q ss_pred ---cCCHHHHHHHHHHHHhcc
Q 004720 527 ---KNDQEGAINQILAMTICL 544 (733)
Q Consensus 527 ---~gd~e~Al~~l~~~~~~~ 544 (733)
..|.++|++.+++.....
T Consensus 105 ~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 105 KGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CccCCCHHHHHHHHHHHHHCC
Confidence 568899999998877653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.12 Score=44.42 Aligned_cols=73 Identities=7% Similarity=-0.147 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 481 AKSFRVLCLCYLGLS---LIDRAQEYITEAEKLEP-NI-ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 481 akl~r~la~cyl~l~---~~~~A~e~~~~A~~ldp-~~-~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.+..++.|.|.++.. +.++|+..+++.++.+| +. .+.|+++-.|.+.|++++|+++++++....+.++..+.+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 456788888888764 56799999999999999 54 678999999999999999999999999998877764433
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