Citrus Sinensis ID: 004748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730--
MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
cccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccc
cHHHHccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEcEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccccccccccccccccccEEEcHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccc
MEELFDTINVRdllsthdltdqtapltapDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLrvgdenaseplVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVispavsygspitfveelnpgpekMSEAILRMVpsvddkienvdgktiySGIIQVVKFIHKRIclqngswvrcfgrltwpRISELIISNFlskvvpedasklADFQKIIDHTSEFEAALKEMMFIsasdnkdarlSNFAENVEVHFASRKKTEILAKARNLLLQcdfavpqestgkdpickndgmavdsseHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFeyhsdfpssikehAVFADMAPRFHLMAEEILQRQIQIVIFNLRealdgadgfqnthQIQQFESAKFSIEQVVFILEKVHIiweplllpstynrsMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQkgktegdfarplddlipSLCKFRKLAELLDMPLRSITAAWEsgellscgfTLSEIEDFIKAIFADSTLRKECLWRIENVPL
MEELFDTINVRdllsthdltdqtaplTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTdeistdlsdilglisyrpidkeVKEIIDEVSAKMKEARVKKELLELVRAIVeigerlkgvkealrdgrLRFAAEELRElkkdlrvgdenaseplvYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVIspavsygspITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGktegdfarplddLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHlmlenlsslleslAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
****FDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGD*NASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEEL*********AILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISA******RLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQ******PICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE****
**ELFDTINVRDLLS**************DLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSL***********************************DEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV*DENASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELN**PEK***********************IYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDF***************************DLLFMSERCVVTKAASQLMKLVHQIL**************YHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQN*H*****ESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLL*****************RPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENV**
MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
**ELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQE*****************SEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVN****TEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENV**
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MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIxxxxxxxxxxxxxxxxxxxxxRAIVEIGERLKGVKEALRDGRxxxxxxxxxxxxxxxxxxxxxASEPLVYGLLRKEWLVCFEELTVDGLDGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query732 2.2.26 [Sep-21-2011]
O48626742 Centromere/kinetochore pr yes no 0.969 0.956 0.624 0.0
O54692779 Centromere/kinetochore pr yes no 0.934 0.878 0.222 2e-42
Q5RFM4779 Centromere/kinetochore pr yes no 0.711 0.668 0.242 3e-42
Q4V8C2777 Centromere/kinetochore pr yes no 0.933 0.879 0.227 7e-42
O43264779 Centromere/kinetochore pr yes no 0.710 0.667 0.243 8e-42
O44218718 Centromere/kinetochore pr yes no 0.521 0.532 0.227 1e-13
Q9W4X9721 Centromere/kinetochore pr yes no 0.513 0.521 0.220 8e-13
O44219714 Centromere/kinetochore pr N/A no 0.564 0.578 0.218 9e-11
>sp|O48626|ZW10_ARATH Centromere/kinetochore protein zw10 homolog OS=Arabidopsis thaliana GN=ZW10 PE=2 SV=1 Back     alignment and function desciption
 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/757 (62%), Positives = 591/757 (78%), Gaps = 47/757 (6%)

Query: 1   MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDF 60
           ++ LF++INVRDLL+ HDL D T PL+APDLRLLI+RLE HSL+IKSKVQSY+ +HH DF
Sbjct: 4   IDALFESINVRDLLAGHDLNDPTTPLSAPDLRLLINRLESHSLRIKSKVQSYLVAHHSDF 63

Query: 61  ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL 120
           + LFSLC DTVSRT  IS D+SD+L L+S RPID E++ ++DE++ K KE ++K+E L+L
Sbjct: 64  SELFSLCQDTVSRTRLISDDVSDVLQLVSDRPIDVEIRSVVDEITEKTKEVKLKRESLDL 123

Query: 121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVC 180
           V AIV I E L+  KEAL++GR RFAAE +RELK  LR+G+E   EP+ Y LLRKEW  C
Sbjct: 124 VNAIVGICEALQETKEALKNGRFRFAAERIRELKVVLRIGEEEDGEPVAYALLRKEWSNC 183

Query: 181 FEE---------------------------LTVDGLDGIELRTVLEAMEVVGILDYGLAK 213
           F+E                           L+V    GI L TVLEAMEV+GILDYGLAK
Sbjct: 184 FDEIQEVLAKFMENAVRFELDSSRIRIKYQLSVGETAGIALSTVLEAMEVIGILDYGLAK 243

Query: 214 VADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGI 273
            AD   K+VI+PAV++ S    VE+L     +++EA LR+  S D K E+VDG  +YSGI
Sbjct: 244 AADSIFKHVITPAVTHASTFAAVEDLCKSAGEVTEATLRLEQSSDHKFEDVDGDAMYSGI 303

Query: 274 IQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHT 333
           ++VVKFI   +C  N +W+  FGRLTWPRISELIIS FLSKVVPEDASKLADFQKII+ T
Sbjct: 304 LKVVKFICSSLCFGNVTWIHSFGRLTWPRISELIISKFLSKVVPEDASKLADFQKIIERT 363

Query: 334 SEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQE 393
           S+FEAALKE+ F+S+SD  ++RLS +AE+VEVHFASRKK EILAKARNLLLQC+F +PQ+
Sbjct: 364 SQFEAALKELNFVSSSD-AESRLSKYAEDVEVHFASRKKIEILAKARNLLLQCNFTIPQD 422

Query: 394 STGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAF 453
                       +A+ +++H+V LLF SERCVV++AASQLM LVH+ L+D+C+SS RVA 
Sbjct: 423 ------------IAMRNAKHIVCLLFSSERCVVSEAASQLMNLVHKTLEDVCVSSARVAS 470

Query: 454 EFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSS 513
           EFY+AARD+ILLYEA+VPVKLE+QL+G+N+ AVL+HNDCLYL +EILG AFEY + FPSS
Sbjct: 471 EFYNAARDSILLYEAVVPVKLEKQLDGLNEAAVLLHNDCLYLFEEILGLAFEYRASFPSS 530

Query: 514 IKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIE 573
           IKE+AVFAD+APRF LMAEE+LQ+Q+ +VI +LREA+D ADGFQNTHQI+QF+SA+FSI+
Sbjct: 531 IKEYAVFADIAPRFKLMAEEVLQKQVHLVISSLREAIDSADGFQNTHQIKQFKSAEFSID 590

Query: 574 QVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIH 633
           QVVF L+ VH+IWEP+L P TY +SMC VLESVF RI RDILLLDDMAA+ET +LQ+LI+
Sbjct: 591 QVVFSLKNVHMIWEPVLRPKTYKQSMCAVLESVFRRIARDILLLDDMAADETFELQKLIY 650

Query: 634 LMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWES 693
           LML+NLSS+L+S+ + ++        +RPLDD+IPSL K RKLAELLDMPL SIT+AWES
Sbjct: 651 LMLKNLSSVLDSVRSADET-------SRPLDDIIPSLRKTRKLAELLDMPLMSITSAWES 703

Query: 694 GELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENV 730
           GEL  C FT +E++DFIKAIF DS LRKECLWRI+ V
Sbjct: 704 GELFRCNFTRTEVQDFIKAIFTDSPLRKECLWRIDEV 740
May be required for accurate chromosome segregation.
Arabidopsis thaliana (taxid: 3702)
>sp|O54692|ZW10_MOUSE Centromere/kinetochore protein zw10 homolog OS=Mus musculus GN=Zw10 PE=2 SV=3 Back     alignment and function description
>sp|Q5RFM4|ZW10_PONAB Centromere/kinetochore protein zw10 homolog OS=Pongo abelii GN=ZW10 PE=2 SV=3 Back     alignment and function description
>sp|Q4V8C2|ZW10_RAT Centromere/kinetochore protein zw10 homolog OS=Rattus norvegicus GN=Zw10 PE=2 SV=3 Back     alignment and function description
>sp|O43264|ZW10_HUMAN Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3 Back     alignment and function description
>sp|O44218|ZW10_DROPS Centromere/kinetochore protein zw10 OS=Drosophila pseudoobscura pseudoobscura GN=mit(1)15 PE=3 SV=2 Back     alignment and function description
>sp|Q9W4X9|ZW10_DROME Centromere/kinetochore protein zw10 OS=Drosophila melanogaster GN=mit(1)15 PE=1 SV=2 Back     alignment and function description
>sp|O44219|ZW10_DROGR Centromere/kinetochore protein zw10 OS=Drosophila grimshawi GN=mit(1)15 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query732
224064880767 predicted protein [Populus trichocarpa] 0.998 0.953 0.691 0.0
357493103752 Centromere/kinetochore protein zw10-like 0.986 0.960 0.675 0.0
356501253742 PREDICTED: centromere/kinetochore protei 0.975 0.962 0.676 0.0
356553727742 PREDICTED: centromere/kinetochore protei 0.972 0.959 0.678 0.0
225447178744 PREDICTED: centromere/kinetochore protei 0.975 0.959 0.694 0.0
449450964760 PREDICTED: centromere/kinetochore protei 0.994 0.957 0.651 0.0
449517435760 PREDICTED: centromere/kinetochore protei 0.994 0.957 0.65 0.0
297823079741 ATZW10 [Arabidopsis lyrata subsp. lyrata 0.965 0.954 0.642 0.0
30685491742 centromere/kinetochore protein ZW10 [Ara 0.969 0.956 0.624 0.0
297739231702 unnamed protein product [Vitis vinifera] 0.918 0.957 0.669 0.0
>gi|224064880|ref|XP_002301597.1| predicted protein [Populus trichocarpa] gi|222843323|gb|EEE80870.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/768 (69%), Positives = 623/768 (81%), Gaps = 37/768 (4%)

Query: 1   MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDF 60
           M+ LFD INVRDLLST DL D TAPL+APDLRLLI+RLE HSLQIKSKV+SYI +HH DF
Sbjct: 1   MDALFDAINVRDLLSTSDLRDPTAPLSAPDLRLLITRLESHSLQIKSKVKSYILAHHSDF 60

Query: 61  ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL 120
           +SLFSLCND VSRTD+I+  L D+L L+S  PID E++EI++E+S KMKEAR K+E+L+L
Sbjct: 61  SSLFSLCNDAVSRTDQINQCLLDLLALVSDSPIDGEIREIVEELSGKMKEAREKREILDL 120

Query: 121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVC 180
           VR IV I ERL G+KE +++GRLR AA ++R+LKK LR+GDE   EP+VYGLLRKEWL C
Sbjct: 121 VRIIVGISERLGGIKEGVKNGRLRLAAVDIRDLKKVLRIGDEEEREPVVYGLLRKEWLDC 180

Query: 181 FEE---------------------------LTVDGLDGI-ELRTVLEAMEVVGILDYGLA 212
           FEE                           L+VDG+ G+ +L +VL++MEV+GILDYG A
Sbjct: 181 FEEIQEMLVKFVENAVQFEPDSSIVRVKYRLSVDGIAGVVDLHSVLDSMEVIGILDYGFA 240

Query: 213 KVADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSG 272
           KVAD  IK+VI P V  GS I+ +E+L    ++M+EAIL+++ S  + + +VDG+ IYS 
Sbjct: 241 KVADQMIKHVIIPVVKKGSSISSMEDLKDVSKEMTEAILKIL-STSNPMVDVDGEIIYSR 299

Query: 273 IIQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDH 332
           IIQV+ F+ K IC +N SW+RCFGRLTWPRISEL+ISNFLSK VPEDASKLA FQKII  
Sbjct: 300 IIQVINFVCKCICFENPSWIRCFGRLTWPRISELVISNFLSKAVPEDASKLAGFQKIIKD 359

Query: 333 TSEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQ 392
           T EFE ALKEM FISASD+ D +LSNFAENVE+HFASRKK EILAKARNLLLQCDF +PQ
Sbjct: 360 TYEFETALKEMAFISASDSTDQKLSNFAENVELHFASRKKIEILAKARNLLLQCDFTIPQ 419

Query: 393 ESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVA 452
           E T K    KN G AV+  EHVVDLLF+SERC+V+KAA+QLM LVHQ L+DICLSS RVA
Sbjct: 420 EYTRKGHPMKNSGTAVNYYEHVVDLLFLSERCLVSKAATQLMDLVHQTLKDICLSSPRVA 479

Query: 453 FEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPS 512
            EFYHAARDAILLYEA+VPVKLERQL+G+NQVAVLMHNDC YLSQEILG AFEY SDFP 
Sbjct: 480 LEFYHAARDAILLYEAVVPVKLERQLDGVNQVAVLMHNDCFYLSQEILGLAFEYRSDFPI 539

Query: 513 SIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSI 572
           SIKEHAVF D+APRF +MAEEILQRQIQ+VI NL+EA+DGADGFQNTHQ+QQFESAKFSI
Sbjct: 540 SIKEHAVFVDLAPRFQVMAEEILQRQIQLVISNLKEAIDGADGFQNTHQVQQFESAKFSI 599

Query: 573 EQVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLI 632
           +QVVFILEKVHIIWEPLLLPSTY +S+C VLESVF+R+T+DILLLDDMAAEETLQLQRLI
Sbjct: 600 DQVVFILEKVHIIWEPLLLPSTYKKSLCMVLESVFARVTKDILLLDDMAAEETLQLQRLI 659

Query: 633 HLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSLCKFRKLA--------ELLDMPL 684
           HLMLE++SSL+ESL+ V QK + E      +DDLIPSL K RK+A        +LLDMPL
Sbjct: 660 HLMLESISSLMESLSTVIQKERPEEYHTSLVDDLIPSLRKIRKVAGKFSVCQSKLLDMPL 719

Query: 685 RSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENVPL 732
           +SIT AWESGEL+S GFT+ E++DFIKAIF DS LRKECLWRIENV L
Sbjct: 720 KSITTAWESGELISIGFTMLEVKDFIKAIFTDSPLRKECLWRIENVGL 767

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357493103|ref|XP_003616840.1| Centromere/kinetochore protein zw10-like protein [Medicago truncatula] gi|355518175|gb|AES99798.1| Centromere/kinetochore protein zw10-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501253|ref|XP_003519440.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356553727|ref|XP_003545204.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Glycine max] Back     alignment and taxonomy information
>gi|225447178|ref|XP_002276594.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450964|ref|XP_004143232.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517435|ref|XP_004165751.1| PREDICTED: centromere/kinetochore protein zw10 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297823079|ref|XP_002879422.1| ATZW10 [Arabidopsis lyrata subsp. lyrata] gi|297325261|gb|EFH55681.1| ATZW10 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30685491|ref|NP_565757.2| centromere/kinetochore protein ZW10 [Arabidopsis thaliana] gi|12643613|sp|O48626.1|ZW10_ARATH RecName: Full=Centromere/kinetochore protein zw10 homolog gi|2661179|gb|AAB88246.1| AtZW10 [Arabidopsis thaliana] gi|17978942|gb|AAL47437.1| At2g32900/T21L14.16 [Arabidopsis thaliana] gi|330253665|gb|AEC08759.1| centromere/kinetochore protein ZW10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297739231|emb|CBI28882.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query732
TAIR|locus:2059412742 ATZW10 [Arabidopsis thaliana ( 0.969 0.956 0.614 6.9e-237
UNIPROTKB|F6UZG3779 ZW10 "Uncharacterized protein" 0.418 0.392 0.243 2.4e-43
UNIPROTKB|Q0P5L6779 ZW10 "Uncharacterized protein" 0.418 0.392 0.233 4.5e-43
UNIPROTKB|O43264779 ZW10 "Centromere/kinetochore p 0.418 0.392 0.237 1.6e-42
UNIPROTKB|F1SM67783 ZW10 "Uncharacterized protein" 0.418 0.390 0.235 2.7e-40
UNIPROTKB|F1NVT0753 ZW10 "Uncharacterized protein" 0.453 0.440 0.219 9.8e-40
UNIPROTKB|F1N958779 ZW10 "Uncharacterized protein" 0.453 0.426 0.221 5.2e-39
MGI|MGI:1349478779 Zw10 "zw10 kinetochore protein 0.418 0.392 0.237 7e-39
RGD|1309197777 Zw10 "zw10 kinetochore protein 0.418 0.393 0.240 9.2e-39
UNIPROTKB|E2QSG4785 ZW10 "Uncharacterized protein" 0.422 0.393 0.240 2.7e-37
TAIR|locus:2059412 ATZW10 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2284 (809.1 bits), Expect = 6.9e-237, P = 6.9e-237
 Identities = 465/757 (61%), Positives = 581/757 (76%)

Query:     1 MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDF 60
             ++ LF++INVRDLL+ HDL D T PL+APDLRLLI+RLE HSL+IKSKVQSY+ +HH DF
Sbjct:     4 IDALFESINVRDLLAGHDLNDPTTPLSAPDLRLLINRLESHSLRIKSKVQSYLVAHHSDF 63

Query:    61 ASLFSLCNDTVSRTDEISTDLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLEL 120
             + LFSLC DTVSRT  IS D+SD+L L+S RPID E++ ++DE++ K KE ++K+E L+L
Sbjct:    64 SELFSLCQDTVSRTRLISDDVSDVLQLVSDRPIDVEIRSVVDEITEKTKEVKLKRESLDL 123

Query:   121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENASEPLVYGLLRKEWLVC 180
             V AIV I E L+  KEAL++GR RFAAE +RELK  LR+G+E   EP+ Y LLRKEW  C
Sbjct:   124 VNAIVGICEALQETKEALKNGRFRFAAERIRELKVVLRIGEEEDGEPVAYALLRKEWSNC 183

Query:   181 FEE---------------------------LTVDGLDGIELRTVLEAMEVVGILDYGLAK 213
             F+E                           L+V    GI L TVLEAMEV+GILDYGLAK
Sbjct:   184 FDEIQEVLAKFMENAVRFELDSSRIRIKYQLSVGETAGIALSTVLEAMEVIGILDYGLAK 243

Query:   214 VADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGI 273
              AD   K+VI+PAV++ S    VE+L     +++EA LR+  S D K E+VDG  +YSGI
Sbjct:   244 AADSIFKHVITPAVTHASTFAAVEDLCKSAGEVTEATLRLEQSSDHKFEDVDGDAMYSGI 303

Query:   274 IQVVKFIHKRICLQNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHT 333
             ++VVKFI   +C  N +W+  FGRLTWPRISELIIS FLSKVVPEDASKLADFQKII+ T
Sbjct:   304 LKVVKFICSSLCFGNVTWIHSFGRLTWPRISELIISKFLSKVVPEDASKLADFQKIIERT 363

Query:   334 SEFEAALKEMMFISASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQE 393
             S+FEAALKE+ F+S+SD  ++RLS +AE+VEVHFASRKK EILAKARNLLLQC+F +PQ+
Sbjct:   364 SQFEAALKELNFVSSSD-AESRLSKYAEDVEVHFASRKKIEILAKARNLLLQCNFTIPQD 422

Query:   394 STGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAF 453
                         +A+ +++H+V LLF SERCVV++AASQLM LVH+ L+D+C+SS RVA 
Sbjct:   423 ------------IAMRNAKHIVCLLFSSERCVVSEAASQLMNLVHKTLEDVCVSSARVAS 470

Query:   454 EFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSS 513
             EFY+AARD+ILLYEA+VPVKLE+QL+G+N+ AVL+HNDCLYL +EILG AFEY + FPSS
Sbjct:   471 EFYNAARDSILLYEAVVPVKLEKQLDGLNEAAVLLHNDCLYLFEEILGLAFEYRASFPSS 530

Query:   514 IKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIE 573
             IKE+AVFAD+APRF LMAEE+LQ+Q+ +VI +LREA+D ADGFQNTHQI+QF+SA+FSI+
Sbjct:   531 IKEYAVFADIAPRFKLMAEEVLQKQVHLVISSLREAIDSADGFQNTHQIKQFKSAEFSID 590

Query:   574 QVVFILEKVHIIWEPLLLPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIH 633
             QVVF L+ VH+IWEP+L P TY +SMC VLESVF RI RDILLLDDMAA+ET +LQ+LI+
Sbjct:   591 QVVFSLKNVHMIWEPVLRPKTYKQSMCAVLESVFRRIARDILLLDDMAADETFELQKLIY 650

Query:   634 XXXXXXXXXXXXXAAVNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWES 693
                          ++V    ++  + +RPLDD+IPSL K RKLAELLDMPL SIT+AWES
Sbjct:   651 LMLKNL-------SSVLDSVRSADETSRPLDDIIPSLRKTRKLAELLDMPLMSITSAWES 703

Query:   694 GELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIENV 730
             GEL  C FT +E++DFIKAIF DS LRKECLWRI+ V
Sbjct:   704 GELFRCNFTRTEVQDFIKAIFTDSPLRKECLWRIDEV 740
GO:0000775 "chromosome, centromeric region" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0007067 "mitosis" evidence=IEA
GO:0007059 "chromosome segregation" evidence=ISS
UNIPROTKB|F6UZG3 ZW10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P5L6 ZW10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O43264 ZW10 "Centromere/kinetochore protein zw10 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SM67 ZW10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVT0 ZW10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N958 ZW10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1349478 Zw10 "zw10 kinetochore protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309197 Zw10 "zw10 kinetochore protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSG4 ZW10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48626ZW10_ARATHNo assigned EC number0.62480.96990.9568yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002043
hypothetical protein (767 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_X0143
SubName- Full=Putative uncharacterized protein; (301 aa)
      • 0.428

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
pfam06248593 pfam06248, Zw10, Centromere/kinetochore Zw10 1e-126
>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10 Back     alignment and domain information 
 Score =  387 bits (995), Expect = e-126
 Identities = 158/592 (26%), Positives = 268/592 (45%), Gaps = 59/592 (9%)

Query: 26  LTAPDLRLLISRLEFHSLQIKSKVQSYIASHHQDFASLFSLCNDTVSRTDEISTDLSDIL 85
           L   DLR  IS+L     + K +V+  I   + DF    S   D + +   +S D+SD+L
Sbjct: 7   LEKEDLRGKISKLLSKVEEYKEEVRDMINKKYSDFLPNMSSAEDLLEQVSSLSEDISDLL 66

Query: 86  GLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRF 145
                  I +++ + ++E++   ++   K   L++++ +++I E L+   EAL       
Sbjct: 67  KSEVSNEILQDLNDAVEELAELKRQLEEKILGLKILQKLLKIHEALEETNEALSGKDYLK 126

Query: 146 AAEELRELKKDLRVGDENA-SEPLVYGLLRKEWLVCFEEL------TVDGL--------- 189
           AA+ L + K  L         E  +Y  LR E+ V  + L        D L         
Sbjct: 127 AADLLEKAKSLLDGLKSRKGEELEIYKSLRLEYTVQSQNLLYHLGEEWDRLVQWKLPSSK 186

Query: 190 -------------------DGIELRTVLEAMEVVGILDYGLAKVADLKIKYVISPAVSYG 230
                                 EL +VL+A+ V+G L+Y L K     +K V  P +   
Sbjct: 187 ELGSAQNTKKTTLHLSKDESQGELSSVLQALAVLGELEYKLKKFCQFLLKNVFEPLIVKP 246

Query: 231 SPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFIHKRICLQNGS 290
             +  VE+     +   +  L        K+   D K ++S I  V+K + K +   +  
Sbjct: 247 VLVVCVEDQ---KDGTVQITLSYESK-TTKLLRPDPKKVFSKIRLVLKTLSKMLLSVSVD 302

Query: 291 WVRCF---GRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFIS 347
               F   G L W R+SEL+I + L K +PE +S+L ++ ++I+ T EFEAALKEM F+ 
Sbjct: 303 DCSLFEILGDLIWERLSELLIKDCLVKSIPETSSELQEYSEVIEDTEEFEAALKEMNFLD 362

Query: 348 ASDNKDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDF--------------AVPQE 393
             D  D  L  +A +V  HFA++K  ++L  ARNL+                    +P  
Sbjct: 363 -GDATD--LLKYARDVNTHFANKKCQDVLVTARNLMTSDLHNTVLVTPDSKVVKPKLPSS 419

Query: 394 STGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAASQLMKLVHQILQDICLSSTRVAF 453
                   K++ + +++ +H+  L F   RC V+++   LMKL ++ L +   SS   A 
Sbjct: 420 KAETKAQAKSERLWLENEKHLSCLSFSFPRCRVSESVQDLMKLAYKTLSEATTSSEGCAD 479

Query: 454 EFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDFPSS 513
           + ++  R+   LY  +VP   ++ L  I Q++ L HN+C+YLS  +L    ++ ++ PS 
Sbjct: 480 QLFYTVRNIFQLYYDVVPTYHKKLLLKIPQLSALFHNNCMYLSHWLLTLGHQFRAELPSP 539

Query: 514 IKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQF 565
           +K+ A F D+ P    + EE    Q+      L E L  A GF+N +  + +
Sbjct: 540 LKDIATFVDLVPGLRRLGEECFLAQLNRQRSELLERLSSARGFENLNDEENY 591

Zw10 and rough deal proteins are both required for correct metaphase check-pointing during mitosis. These proteins bind to the centromere/kinetochore. Length = 593

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 732
KOG2163719 consensus Centromere/kinetochore protein zw10 invo 100.0
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 100.0
PF11989291 Dsl1_C: Retrograde transport protein Dsl1 C termin 100.0
PF10475291 DUF2450: Protein of unknown function N-terminal do 98.31
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 97.25
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 96.9
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 96.61
KOG3691 982 consensus Exocyst complex subunit Sec8 [Intracellu 96.28
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 96.28
KOG2307705 consensus Low density lipoprotein receptor [Intrac 96.28
KOG2180793 consensus Late Golgi protein sorting complex, subu 96.15
KOG0412773 consensus Golgi transport complex COD1 protein [In 96.14
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 96.1
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 95.76
KOG2163719 consensus Centromere/kinetochore protein zw10 invo 95.58
PF06046566 Sec6: Exocyst complex component Sec6; InterPro: IP 95.34
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 95.32
KOG2176800 consensus Exocyst complex, subunit SEC15 [Intracel 93.68
KOG2069581 consensus Golgi transport complex subunit [Intrace 93.24
KOG2115951 consensus Vacuolar sorting protein VPS45 [Intracel 93.11
PF15469182 Sec5: Exocyst complex component Sec5 90.1
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 89.48
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 84.68
PF04912388 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit 82.82
KOG4182828 consensus Uncharacterized conserved protein [Funct 81.5
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 80.64
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=8e-102  Score=841.72  Aligned_cols=667  Identities=24%  Similarity=0.348  Sum_probs=565.0

Q ss_pred             CccccchhhHHHhhhcCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhhHHHHhHHHHHH
Q 004748            1 MEELFDTINVRDLLSTHDLTDQTAPLTAPDLRLLISRLEFHSLQIKS-KVQSYIASHHQDFASLFSLCNDTVSRTDEIST   79 (732)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dl~~~i~~l~~~~~~~k~-~v~~~i~~~y~~f~~~~~~~~~~~~~~~~~~~   79 (732)
                      +++||.+.|++..|-++|+.+|.+|            +..|+.++++ +|++.|.+.|++|+|.+.+.....+++.++..
T Consensus         2 ~~~l~Es~n~~g~lekedl~~~it~------------ls~rv~r~~gnrv~shi~~~yskflp~~~s~~~di~E~~sL~r   69 (719)
T KOG2163|consen    2 IDALAESENSYGDLEKEDLKNGITS------------LSQRVVRKYGNRVVSHIVNAYSKFLPDRLSNLEDIAEMSSLTR   69 (719)
T ss_pred             chHHHHHhccccchhhhhhcCCccc------------cchHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHhh
Confidence            4788889998887766555555555            5566777778 89999999999999999999999999999999


Q ss_pred             hHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Q 004748           80 DLSDILGLISYRPIDKEVKEIIDEVSAKMKEARVKKELLELVRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRV  159 (732)
Q Consensus        80 ~~~~l~~~i~~~~~~~~l~~~~~~~~~l~~el~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~  159 (732)
                      +++++++.|++ ++...|+.+.++.+..+++++   ..+-.+++.+++..+....+.....+.+.++++.|+++.+.++.
T Consensus        70 di~~l~~~i~s-dv~d~L~e~~~~~~d~e~qle---v~l~~l~~~qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~  145 (719)
T KOG2163|consen   70 DISNLIDQIAS-DVPDMLAEIKSQAQDCENQLE---VQLMKLVEEQEVIMRSETTNCVEWGKAILACLQFLNEANKLLEG  145 (719)
T ss_pred             hHHHHHHHhhh-hhHHHHHHhhcchhhhhhHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999 788899999999999999998   33335688889999999999999999999999999999999988


Q ss_pred             CCCCCch----------------hHHHHHHHHHHHHHhhhe-----------------ee---cC--CCCCcHHHHHHHH
Q 004748          160 GDENASE----------------PLVYGLLRKEWLVCFEEL-----------------TV---DG--LDGIELRTVLEAM  201 (732)
Q Consensus       160 ~~~~~~~----------------~~i~~~L~~~W~~lv~~~-----------------tv---~~--~~~~~L~~vl~AL  201 (732)
                      .+..+-.                +.-|+ +...|.....|.                 ++   +.  .....++.+..|+
T Consensus       146 ~grd~fd~~~lk~l~~vlrI~k~ne~ye-l~a~~~~~~~w~~~~s~qe~ldr~~q~~~~~f~~ss~ve~q~~l~~t~sa~  224 (719)
T KOG2163|consen  146 IGRDGFDMSVLKHLAAVLRILKYNERYE-LSADYERAMNWPKLSSIQECLDRTNQVSFSVFNVSSRVEDQKMLNETLSAM  224 (719)
T ss_pred             cCcccccHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHhcccCccHHHHHHHHHHhheeeeeccchhhhhhcCChHHHHH
Confidence            7654421                12222 333444443322                 11   10  1123455555555


Q ss_pred             HHhCcchHHHHHH-HHHHHHHhhhhhhcCCCCcccccccCCCCcccccceeeeeccCCccccCCChhhHHHHHHHHHHHH
Q 004748          202 EVVGILDYGLAKV-ADLKIKYVISPAVSYGSPITFVEELNPGPEKMSEAILRMVPSVDDKIENVDGKTIYSGIIQVVKFI  280 (732)
Q Consensus       202 ~~lg~L~~~l~~l-~~~L~~~ii~P~i~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~~~k~~~~~~~~v~~~l~~v~~FL  280 (732)
                      -+++.+.+.++.+ +..|+++++.|+.+.|.....+++   +   .+...+++...-..    .++.++|.++..|++-+
T Consensus       225 ia~s~l~E~~~~~k~~~Lldyclapvasrp~~hvyie~---~---p~~~~~Rf~~~~~~----~s~a~~f~~v~~VlEsl  294 (719)
T KOG2163|consen  225 IAISQLPERLDAWKIVILLDYCLAPVASRPGVHVYIED---N---PTPDQTRFLINQKP----RSKADKFIDVAKVLESL  294 (719)
T ss_pred             HHHHHhHHHhhhHHHHHHHHHhHHHhccCccceeeecc---C---CCcceeeeeecccc----CchHhhhhHHHHHHHHh
Confidence            5555555544443 578999999999999976544443   1   12245555432111    36778899999998888


Q ss_pred             HHhccc---------CCCchHHHhhhhhhHHHHHHHHHhhcccCCCCChhhhhhHHHHHHHHHHHHHHHHHcccccCCCc
Q 004748          281 HKRICL---------QNGSWVRCFGRLTWPRISELIISNFLSKVVPEDASKLADFQKIIDHTSEFEAALKEMMFISASDN  351 (732)
Q Consensus       281 ~~~L~~---------~~~~l~~~lg~~i~p~ls~~lI~~~L~~aIP~~~~~l~~F~~vi~~~~~Fe~~L~~lgf~~~~~~  351 (732)
                      .-.|+.         .+..+.+++|+.||..++++|+++||.++||.+.+++.+|+.+|+.+.+||..|+++.|++..+.
T Consensus       295 ~l~Lh~l~~~e~evt~~~~~~emigDhi~e~l~~~l~k~cl~~avP~~stkl~d~e~iie~t~qfE~aLkem~f~~~~dq  374 (719)
T KOG2163|consen  295 ELKLHVLHSHELEVTTGKTFTEMIGDHIEEQLITMLLKDCLAIAVPVTSTKLEDQEMIIELTQQFEVALKEMKFLGFFDQ  374 (719)
T ss_pred             hhcccccccchhhhcccchHHHHHhHHHHHHHHHHHHHhhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            855541         34679999999999999999999999999999999999999999999999999999988776654


Q ss_pred             cchhHhHHHHhHHHHHHHhhhHHHHHHHHHhhhhcCCCCCCCCCCCCCCcccCCCCCCCCcccccccccccceeecccHH
Q 004748          352 KDARLSNFAENVEVHFASRKKTEILAKARNLLLQCDFAVPQESTGKDPICKNDGMAVDSSEHVVDLLFMSERCVVTKAAS  431 (732)
Q Consensus       352 ~~~~L~~~v~~v~~~f~~krr~~~L~~AR~ll~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~c~IS~~~~  431 (732)
                       .+.|.+|++++++||++|||.++|++||+||.++-.+.+.+.+            ....+++...+|.+|+|+||+++.
T Consensus       375 -~~allkfaed~ethfanRkc~~il~kARnLi~~~~~~~v~vip------------ntha~hvanl~FsfprC~vSeSa~  441 (719)
T KOG2163|consen  375 -KSALLKFAEDTETHFANRKCFAILSKARNLINETYDKLVTVIP------------NTHAEHVANLYFSFPRCTVSESAI  441 (719)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceecc------------cccHHHHhhhhccCcceeecHHHH
Confidence             4599999999999999999999999999999975444443321            123445667789999999999999


Q ss_pred             HHHHHHHHHHHHhhhhc-hHhHHHHHHhHHHHHHHHHhhhhhhhHHhhccccchhhhhhhchHHHHHHHhhchhhhccCC
Q 004748          432 QLMKLVHQILQDICLSS-TRVAFEFYHAARDAILLYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILGFAFEYHSDF  510 (732)
Q Consensus       432 ~l~~Li~~~L~ea~~ss-~~~a~~L~~~~~~i~~LyravvP~~h~~~l~~~p~~a~l~yNDc~YLa~~L~~l~~~~~~~l  510 (732)
                      .+|+|++++|.+++.++ +++|.+||+++|+|+.||.++||++|++.|+|+||+|++|||||||++|+..+.++      
T Consensus       442 ~fvnL~~~tL~~at~ss~dq~a~~la~~arni~hly~~vVP~khrell~siPq~AaifhNNCmyi~h~~~~h~f------  515 (719)
T KOG2163|consen  442 NFVNLLRDTLKAATASSDDQAAAKLALTARNIVHLYVIVVPRKHRELLSSIPQMAAIFHNNCMYISHCIMTHSF------  515 (719)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchHHHHHhcccHHHHHHHHhhhc------
Confidence            99999999999999887 89999999999999999999999999999999999999999999999997776554      


Q ss_pred             CcchhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhhhHHHHHHHHHHHHHHHHhhcccCC
Q 004748          511 PSSIKEHAVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPLL  590 (732)
Q Consensus       511 ~~~~~~~~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~a~gf~~~~~~~~~e~~~~ai~q~~~~L~~l~~~W~~vL  590 (732)
                          .+..+|+|++|+||.+|++||++|+.+|+++|+++|++++||.++++...+++|.++|+||++||+.|+++|++||
T Consensus       516 ----~g~~~ladlaprlr~~a~ecf~kQv~~q~seL~e~l~sa~~Fen~~~ee~~ssa~klVrQcL~qLkll~~vw~~vL  591 (719)
T KOG2163|consen  516 ----LGEPLLADLAPRLRTVAAECFEKQVTRQRSELTEYLESASIFENLPAEEMSSSADKLVRQCLLQLKLLAKVWREVL  591 (719)
T ss_pred             ----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcHHhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence                3467899999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcCCCCCCCCccchhhhchhH
Q 004748          591 LPSTYNRSMCTVLESVFSRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDFARPLDDLIPSL  670 (732)
Q Consensus       591 p~~vy~~~ig~Lv~~v~~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~~~~~~~~~~~vp~W  670 (732)
                      |+.+||++||+|+|+++.++|.+|+.++|||++++.+|+.||+.+++.++++|.++.+           .+.+..+|++|
T Consensus       592 pe~vYck~mc~Llnt~~~elir~V~tl~Disa~da~eL~dLik~vL~~~p~vfa~~~e-----------~~et~v~v~~w  660 (719)
T KOG2163|consen  592 PEVVYCKVMCSLLNTLLDELIRHVVTLSDISANDANELADLIKRVLEVVPNVFAYKEE-----------TKETDVCVREW  660 (719)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHHHHHHHHHHhhhhhhcChhh-----------ccCccccHHHh
Confidence            9999999999999999999999999999999999999999999999999999987642           12467899999


Q ss_pred             HhHHHHHHHccCChHhHHHHhhcCC-cccCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Q 004748          671 CKFRKLAELLDMPLRSITAAWESGE-LLSCGFTLSEIEDFIKAIFADSTLRKECLWRIE  728 (732)
Q Consensus       671 ~Kf~~L~~iL~asL~dI~~~W~~G~-lla~~fs~~Ev~~LIrAlF~ds~~R~~~L~~I~  728 (732)
                      ++|+++.++|++||.||+.||.+|+ |++++||.+||++|||||||||++|+++|++|+
T Consensus       661 ~pl~el~~mL~asLmeIt~rW~dgkGplaa~fsrsEVk~lIkALFqDs~wRadaia~i~  719 (719)
T KOG2163|consen  661 FPLNELVFMLGASLMEITHRWFDGKGPLAAHFSRSEVKGLIKALFQDSQWRADAIARIQ  719 (719)
T ss_pred             ccHHHHHHHhCchHhHHHHHHhcCCccHHhhccHHHHHHHHHHHhhchHHHHHHHhhcC
Confidence            9999999999999999999999999 999999999999999999999999999999984

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum [] Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] Back     alignment and domain information
>KOG4182 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
3k8p_C357 DSL1, KLLA0C02695P; intracellular trafficking, DSL 3e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} Length = 357 Back     alignment and structure
 Score =  133 bits (336), Expect = 3e-34
 Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 24/202 (11%)

Query: 532 EEILQRQIQIVIFNLREALDG--ADGFQNTHQIQQFESAKFSIEQVVFILEKVHIIWEPL 589
            E+  R++ + +  +++ +     D  Q     ++      +I  +   L  +     P 
Sbjct: 171 MELNSRRLDLNLNLIKKTIYKLVNDQLQELKDNERTPDWDITISSL---LPYLKKTALPT 227

Query: 590 LLPSTYNRSMCTVLESVFSR-ITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAA 648
           L     N  +  ++  +    +  +IL    ++ + +  L   I L+L  L     +L  
Sbjct: 228 LYKLEDNTILVALIRYIVHDLVIDNILHWRVISEKSSENLSEFIMLLLSGLEIPRLNL-- 285

Query: 649 VNQKGKTEGDFARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIED 708
                         ++    S  K   L+++L   L+ I   +  GE     F   EI  
Sbjct: 286 --------------IETYRHSREKLGILSKILTAHLKDILEMFYEGEFF--LFETDEIVQ 329

Query: 709 FIKAIFADSTLRKECLWRIENV 730
           +I  +FAD+  R++C+  I  V
Sbjct: 330 WIILLFADTPTRRDCIDEIRRV 351
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query732
3k8p_C357 DSL1, KLLA0C02695P; intracellular trafficking, DSL 99.97
2fji_1399 Exocyst complex component SEC6; exocytosis, tandem 96.85
3hr0_A263 COG4; conserved oligomeric golgi complex, intracel 96.22
3swh_A341 MUNC13-1, protein UNC-13 homolog A; alpha helical, 87.13
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} Back     alignment and structure
Probab=99.97  E-value=1.9e-30  Score=270.98  Aligned_cols=251  Identities=18%  Similarity=0.231  Sum_probs=177.9

Q ss_pred             eeecccHHHHHHHHHHHHHHhhh-hchHhHHHHHHhHHHHHH-HHHhhhhhhhHHhhccccchhhhhhhchHHHHHHHhh
Q 004748          424 CVVTKAASQLMKLVHQILQDICL-SSTRVAFEFYHAARDAIL-LYEAIVPVKLERQLEGINQVAVLMHNDCLYLSQEILG  501 (732)
Q Consensus       424 c~IS~~~~~l~~Li~~~L~ea~~-ss~~~a~~L~~~~~~i~~-LyravvP~~h~~~l~~~p~~a~l~yNDc~YLa~~L~~  501 (732)
                      ..||+.|+.+..++......+.. ....+. +-|..-.+++. .|-|+.-.+| .+-       -.||||--|+-.+=. 
T Consensus        96 i~vt~lp~~f~~i~~~f~~~~~~~~~~~~~-~~~~yK~NlLqT~f~am~~~~~-~~W-------wqly~D~ryi~~~~~-  165 (357)
T 3k8p_C           96 IQVSVFVQSAAKVFTEFEQGCDTIGRSKVE-SIYLYKFNLLQTAFFAMVSEKV-NDW-------TQLYKDVRYLYTENP-  165 (357)
T ss_dssp             EEEETHHHHHHHHHHHHHHHHHTTTTTSSH-HHHHHHHHHHHHHHHHHHHHHC-SCH-------HHHHHHHHHHHHHCT-
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHhh-hHH-------HHHHHHHHHHHhcCh-
Confidence            88999999999999998887643 333344 66666666655 4778777776 332       789999999977611 


Q ss_pred             chhhhccCCCcchhhh-hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhhhHHHHHHHHHHHHH
Q 004748          502 FAFEYHSDFPSSIKEH-AVFADMAPRFHLMAEEILQRQIQIVIFNLREALDGADGFQNTHQIQQFESAKFSIEQVVFILE  580 (732)
Q Consensus       502 l~~~~~~~l~~~~~~~-~~Fvd~~~~~r~~a~~~~~~qi~~~~~~L~~~L~~a~gf~~~~~~~~~e~~~~ai~q~~~~L~  580 (732)
                             .| ..++++ ..|++.--..   -+....+-++.|.++++   +...+=       .....   +++.   |-
T Consensus       166 -------~l-~rl~EL~~~~le~~l~~---~~k~v~~lv~~qL~~l~---~nE~~p-------~W~~t---~~~L---lP  218 (357)
T 3k8p_C          166 -------KL-LQLMELNSRRLDLNLNL---IKKTIYKLVNDQLQELK---DNERTP-------DWDIT---ISSL---LP  218 (357)
T ss_dssp             -------TC-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HTSSSC-------CCHHH---HHTH---HH
T ss_pred             -------hh-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---hccCCC-------CHHHH---HHHH---HH
Confidence                   11 012222 2233322111   11122222333333333   232221       12111   2332   33


Q ss_pred             HHHhhcccCCChHHHHHHHHHHHHHHH-HHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhHhhhhhhHHhhcCCCCCCCC
Q 004748          581 KVHIIWEPLLLPSTYNRSMCTVLESVF-SRITRDILLLDDMAAEETLQLQRLIHLMLENLSSLLESLAAVNQKGKTEGDF  659 (732)
Q Consensus       581 ~l~~~W~~vLp~~vy~~~ig~Lv~~v~-~~ii~~Il~l~DIs~~es~~L~~l~~~~~~~l~~LF~~~~~~~~~~~~~~~~  659 (732)
                      -+.+.|.+.|.+....+.++.|+++++ ++||++|++++|||+++|++|+.||+.+ .++..+  |..            
T Consensus       219 ~i~~~i~~pl~k~~~~~~l~~lvnfi~~~~II~dIl~LeDISE~eS~~La~Li~~l-~~l~~l--P~l------------  283 (357)
T 3k8p_C          219 YLKKTALPTLYKLEDNTILVALIRYIVHDLVIDNILHWRVISEKSSENLSEFIMLL-LSGLEI--PRL------------  283 (357)
T ss_dssp             HHHHTHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHTSSCCCHHHHHHHHHHHHHH-HHHTCC--GGG------------
T ss_pred             HHHHHhhhHhhcchHHHHHHHHHHHHHhhHHHHHHcCcccCCHHHHHHHHHHHHHH-HcCCCC--ccc------------
Confidence            445667777777888999999999999 9999999999999999999999999985 333344  211            


Q ss_pred             ccchhhhchhHHhHHHHHHHccCChHhHHHHhhcCCcccCCCCHHHHHHHHHHhcCCChHHHHHHHHHHc
Q 004748          660 ARPLDDLIPSLCKFRKLAELLDMPLRSITAAWESGELLSCGFTLSEIEDFIKAIFADSTLRKECLWRIEN  729 (732)
Q Consensus       660 ~~~~~~~vp~W~Kf~~L~~iL~asL~dI~~~W~~G~lla~~fs~~Ev~~LIrAlF~ds~~R~~~L~~I~~  729 (732)
                       ..++.|||+|.||+||++||++||+||+++|++|++ + +|+++||++||||||+|||+|+++|++|++
T Consensus       284 -~~i~~Yv~~W~Kf~~L~~IL~ssLkDI~~lW~eGeL-~-~FstdEVv~LIrALFaDT~~Rr~aI~eIre  350 (357)
T 3k8p_C          284 -NLIETYRHSREKLGILSKILTAHLKDILEMFYEGEF-F-LFETDEIVQWIILLFADTPTRRDCIDEIRR  350 (357)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTGG-G-GSCHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCc-c-eecHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence             135789999999999999999999999999999998 4 999999999999999999999999999987
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens} Back     alignment and structure
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query732
d2d2sa1229 Exocyst complex component EXO84 {Baker's yeast (Sa 89.68
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.68  E-value=3.4  Score=38.96  Aligned_cols=94  Identities=16%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcCCCCC------chhHHHHHHHHHHHHHhhheee--c-CCCC
Q 004748          121 VRAIVEIGERLKGVKEALRDGRLRFAAEELRELKKDLRVGDENA------SEPLVYGLLRKEWLVCFEELTV--D-GLDG  191 (732)
Q Consensus       121 l~~l~~~~~~L~~~~~~l~~~~~~~Aa~~Le~~~~~l~~~~~~~------~~~~i~~~L~~~W~~lv~~~tv--~-~~~~  191 (732)
                      -+.++.+...+++.+-.+.+++|.+|++.+++.+..+...+...      ....+...+.+.+..+...+.-  . ....
T Consensus         6 ~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~~~~~~   85 (229)
T d2d2sa1           6 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEI   85 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred             HhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence            36789999999999999999999999999999999988876332      1233444566777777765421  1 1223


Q ss_pred             CcHHHHHHHHHHhCcchHHHHHH
Q 004748          192 IELRTVLEAMEVVGILDYGLAKV  214 (732)
Q Consensus       192 ~~L~~vl~AL~~lg~L~~~l~~l  214 (732)
                      ..+..++.+|..||.-+.....|
T Consensus        86 ~~~~~~v~~L~rLg~~~~A~~lf  108 (229)
T d2d2sa1          86 VHLKSGTENMIKLGLPEQALDLF  108 (229)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchHHHHHH
Confidence            46777888999998766654433