Citrus Sinensis ID: 004764
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| 225438333 | 735 | PREDICTED: uncharacterized protein LOC10 | 0.883 | 0.880 | 0.751 | 0.0 | |
| 224083544 | 727 | predicted protein [Populus trichocarpa] | 0.879 | 0.885 | 0.751 | 0.0 | |
| 255563831 | 722 | conserved hypothetical protein [Ricinus | 0.878 | 0.890 | 0.751 | 0.0 | |
| 296082624 | 712 | unnamed protein product [Vitis vinifera] | 0.852 | 0.876 | 0.737 | 0.0 | |
| 357520155 | 742 | cyclase/dehydrase family protein [Medica | 0.901 | 0.889 | 0.698 | 0.0 | |
| 449520367 | 727 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.872 | 0.878 | 0.708 | 0.0 | |
| 356512876 | 725 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.979 | 0.653 | 0.0 | |
| 356527540 | 721 | PREDICTED: uncharacterized protein LOC10 | 0.903 | 0.916 | 0.692 | 0.0 | |
| 356518814 | 724 | PREDICTED: uncharacterized protein LOC10 | 0.894 | 0.904 | 0.683 | 0.0 | |
| 22326677 | 719 | uncharacterized protein [Arabidopsis tha | 0.934 | 0.951 | 0.641 | 0.0 |
| >gi|225438333|ref|XP_002273364.1| PREDICTED: uncharacterized protein LOC100262883 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/656 (75%), Positives = 566/656 (86%), Gaps = 9/656 (1%)
Query: 80 RKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR 139
RKVHCEVEV+SWRERRIKAE+LVNAD++SVW+ALTDYERLADF+PNL CSGRIPCP+PGR
Sbjct: 86 RKVHCEVEVISWRERRIKAEILVNADIESVWDALTDYERLADFIPNLVCSGRIPCPHPGR 145
Query: 140 IWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRS 199
IWLEQRG QRALYWHIEARVVLDLQE+ ++A+DREL FSMVDGDFKKFEGKWS+K G RS
Sbjct: 146 IWLEQRGFQRALYWHIEARVVLDLQEVPNAANDRELRFSMVDGDFKKFEGKWSLKYGKRS 205
Query: 200 STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGE 259
STT+LSYEVNVIPR NFPAIFLERIIRSDLPVNLQALACR+E++F NQKIP I++S G
Sbjct: 206 STTSLSYEVNVIPRFNFPAIFLERIIRSDLPVNLQALACRSEKNFEGNQKIPFIESSLGT 265
Query: 260 LSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRL 319
S+ +A+P +D DG L + +P G F ++ SS+F + SSS+L+S WGVFG+VC+L
Sbjct: 266 ASIADVANPGIDLDGALSVEKLSP-GVFKKSHASSSFDPLFQSSSELSSNWGVFGKVCKL 324
Query: 320 DRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAIS 379
DRPC VDEVHLRRFDGLLENGGVHRCVVAS+TVKAPV EVWNV+TAYETLPEIVPNLAIS
Sbjct: 325 DRPCMVDEVHLRRFDGLLENGGVHRCVVASMTVKAPVREVWNVLTAYETLPEIVPNLAIS 384
Query: 380 KILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFE 439
KILSRENNKVRILQEGCKGLLYMVLHAR V+D+CEQ EQEISF QVEGDFDSFQGKW+ E
Sbjct: 385 KILSRENNKVRILQEGCKGLLYMVLHARAVLDLCEQLEQEISFVQVEGDFDSFQGKWILE 444
Query: 440 QLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDS 499
QLG+ HTLLKY+VESKM ++S LSEAIMEEVIYEDLPSNLCAIRDY+EKRE NSL
Sbjct: 445 QLGNQHTLLKYTVESKMHRDSFLSEAIMEEVIYEDLPSNLCAIRDYIEKREASNSL---- 500
Query: 500 VETTNHTQSSDD--LTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKA 557
ET+++ + S++ ++ S+ +++ D PN +QRPRVPGLQ NIEVLKA
Sbjct: 501 -ETSDYVRYSEEQFISSSNGRDVDYHPKPADEVSDVSGPNPLRQRPRVPGLQRNIEVLKA 559
Query: 558 ELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGY 617
ELL+FI +HGQEGFMPMRKQLRKHGRVD+EKAITRMGGFRR+ASLMNL+LAYKHRKPKGY
Sbjct: 560 ELLKFILEHGQEGFMPMRKQLRKHGRVDIEKAITRMGGFRRIASLMNLSLAYKHRKPKGY 619
Query: 618 WDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKL 677
WDNLENL+EEI+RFQRSWGMDPS+MPSRK+FERAGRYDIARALEKWGGLHEVSRLLSLK+
Sbjct: 620 WDNLENLKEEITRFQRSWGMDPSYMPSRKTFERAGRYDIARALEKWGGLHEVSRLLSLKV 679
Query: 678 RHPNRRAHIIKDKKVDYV-DPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 732
RHPNR+ ++ K K+ D+V P + E + SKPYV QD QKW M L+ LDINWVE
Sbjct: 680 RHPNRQPNLTKHKRSDFVASPDMVVDEDRTTSKPYVPQDAQKWLMSLQHLDINWVE 735
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083544|ref|XP_002307063.1| predicted protein [Populus trichocarpa] gi|222856512|gb|EEE94059.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/653 (75%), Positives = 554/653 (84%), Gaps = 9/653 (1%)
Query: 80 RKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR 139
RKVHCEVEV+SWRERRIKA++LV AD+ SVWN+LTDYERLADF+PNL CSGRIPCP+PGR
Sbjct: 84 RKVHCEVEVISWRERRIKAQILVYADIQSVWNSLTDYERLADFIPNLVCSGRIPCPHPGR 143
Query: 140 IWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRS 199
+WLEQRGLQRALYWHIEARVVLDLQE HSA++REL+FSMVDGDFKKFEGKWS++SGTR
Sbjct: 144 VWLEQRGLQRALYWHIEARVVLDLQEFPHSANNRELHFSMVDGDFKKFEGKWSLRSGTRH 203
Query: 200 STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGE 259
TTTLSYEVNV+PR NFPAIFLERII SDLPVNL+ALACRAER F NQK + ++ E
Sbjct: 204 GTTTLSYEVNVMPRYNFPAIFLERIIGSDLPVNLRALACRAERDFEGNQKTGITES---E 260
Query: 260 LSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRL 319
S+ SP + DG EK K + ++ SS FG + P S+DLN+ WGV G+ CRL
Sbjct: 261 TSMTASTSPGMVLDGAFREKDKLSTEDLKQSYPSSTFGPMLPPSNDLNNNWGVLGKACRL 320
Query: 320 DRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAIS 379
DR C VDEVHLRR+DGLLENGGVHRCV ASITVKAPV EVWNV+TAYE+LPE VPNLAIS
Sbjct: 321 DRRCMVDEVHLRRYDGLLENGGVHRCVFASITVKAPVREVWNVLTAYESLPEFVPNLAIS 380
Query: 380 KILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFE 439
KILSRENNKVRILQEGCKGLLYMVLHARVV+D+CE EQEISFEQVEGDFDSFQGKW+ E
Sbjct: 381 KILSRENNKVRILQEGCKGLLYMVLHARVVLDLCEHLEQEISFEQVEGDFDSFQGKWILE 440
Query: 440 QLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDS 499
QLGSHHTLLKY+VESK +++ LSEAIMEEVIYEDLPSNLCAIRDY+EKRE +N+S
Sbjct: 441 QLGSHHTLLKYNVESKTHRDTFLSEAIMEEVIYEDLPSNLCAIRDYIEKRE-----SNNS 495
Query: 500 VETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAEL 559
ET H Q S +L S + S + + D PNS KQRPRVPGLQ +I+VLK+EL
Sbjct: 496 SETEEHGQYSKELDSSRGDSYHEHSMAVQQVSDVSNPNSLKQRPRVPGLQRDIDVLKSEL 555
Query: 560 LEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWD 619
L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+A+LMNL+LAYKHRKPKGYWD
Sbjct: 556 LKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIATLMNLSLAYKHRKPKGYWD 615
Query: 620 NLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRH 679
NLENL+EEISRFQRSWGMD SFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL+LK+RH
Sbjct: 616 NLENLQEEISRFQRSWGMDLSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLALKVRH 675
Query: 680 PNRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 732
PNR+A+ IKD+K+D V + E E KIP+K YVSQDTQKW MK KDLDINWV+
Sbjct: 676 PNRQANSIKDRKIDDVS-TDAEGEDKIPTKAYVSQDTQKWLMKFKDLDINWVD 727
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563831|ref|XP_002522916.1| conserved hypothetical protein [Ricinus communis] gi|223537843|gb|EEF39459.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/652 (75%), Positives = 546/652 (83%), Gaps = 9/652 (1%)
Query: 81 KVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRI 140
KV+CEVEVVSWRERRI A++ V AD+ SVWNALTDYERLADF+PNL CSGRIPCP+PGRI
Sbjct: 80 KVNCEVEVVSWRERRINAQITVYADIQSVWNALTDYERLADFIPNLICSGRIPCPHPGRI 139
Query: 141 WLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSS 200
WLEQRGLQRALYWHIEARVVLDLQE SA++ EL+FSMVDGDFKKF+GKWS+KSGTR+
Sbjct: 140 WLEQRGLQRALYWHIEARVVLDLQEFPISANNLELHFSMVDGDFKKFDGKWSLKSGTRAG 199
Query: 201 TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGEL 260
TT LSYEVNVIPR NFPAIFLERIIRSDLP+NLQALA RAER+F NQK I S +
Sbjct: 200 TTMLSYEVNVIPRFNFPAIFLERIIRSDLPLNLQALAGRAERTFEGNQKTS-IAESGKSM 258
Query: 261 SLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLD 320
++ P L +G EK G+ NE+ SS+FG VP SSSDLN+ WGVFG+VC LD
Sbjct: 259 AISTFHGPGL--NGSSCEKRNMSAGDLNESYQSSHFGPVPSSSSDLNTNWGVFGKVCSLD 316
Query: 321 RPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISK 380
RP DEVHLRR+DGLLE+GGVHRCVVASITVKAPV EVW V+TAYE+LPEIVPNLAISK
Sbjct: 317 RPSIADEVHLRRYDGLLEDGGVHRCVVASITVKAPVREVWKVLTAYESLPEIVPNLAISK 376
Query: 381 ILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQ 440
IL RENNKVRILQEGCKGLLYMVLHARVV+D+CE EQEISFEQ EGDFDSFQGKWL EQ
Sbjct: 377 ILLRENNKVRILQEGCKGLLYMVLHARVVLDLCEHLEQEISFEQAEGDFDSFQGKWLLEQ 436
Query: 441 LGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSV 500
LGSHHTLLKY+V SKM K+S LSEAIMEEVIYEDLPSN+CAIRDY+EKRE SL
Sbjct: 437 LGSHHTLLKYTVNSKMHKDSFLSEAIMEEVIYEDLPSNMCAIRDYIEKREDKISL----- 491
Query: 501 ETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELL 560
E Q S +L S+ ++ + D+VD PNS +QRPRVPGLQ +IEVLK+ELL
Sbjct: 492 EMHLLGQYSKELESSNCDIDTKYGNATGDIVDLNNPNSVRQRPRVPGLQRDIEVLKSELL 551
Query: 561 EFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDN 620
+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+ASLMNL+LAYK RKPKGYWDN
Sbjct: 552 KFISEHGQEGFMPMRKQLRMHGRVDIEKAITRMGGFRRIASLMNLSLAYKRRKPKGYWDN 611
Query: 621 LENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHP 680
LENL+EEI RFQ SWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL+LK+RHP
Sbjct: 612 LENLQEEIGRFQLSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLALKVRHP 671
Query: 681 NRRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 732
NR+A++IKDKK+DY N+E E I SK YVSQDT+KW KLKDLDINW E
Sbjct: 672 NRQANVIKDKKIDYTTSTNVEGEDGI-SKTYVSQDTEKWLTKLKDLDINWGE 722
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082624|emb|CBI21629.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/656 (73%), Positives = 553/656 (84%), Gaps = 32/656 (4%)
Query: 80 RKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR 139
RKVHCEVEV+SWRERRIKAE+LVNAD++SVW+ALTDYERLADF+PNL CSGRIPCP+PGR
Sbjct: 86 RKVHCEVEVISWRERRIKAEILVNADIESVWDALTDYERLADFIPNLVCSGRIPCPHPGR 145
Query: 140 IWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRS 199
IWLEQRG QRALYWHIEARVVLDLQE+ ++A+DREL FSMVDGDFKKFEGKWS+K G RS
Sbjct: 146 IWLEQRGFQRALYWHIEARVVLDLQEVPNAANDRELRFSMVDGDFKKFEGKWSLKYGKRS 205
Query: 200 STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGE 259
STT+LSYEVNVIPR NFPAIFLERIIRSDLPVNLQALACR+E++F NQKIP I++S G
Sbjct: 206 STTSLSYEVNVIPRFNFPAIFLERIIRSDLPVNLQALACRSEKNFEGNQKIPFIESSLGT 265
Query: 260 LSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRL 319
S+ +++ SS+F + SSS+L+S WGVFG+VC+L
Sbjct: 266 ASIA------------------------DKSHASSSFDPLFQSSSELSSNWGVFGKVCKL 301
Query: 320 DRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAIS 379
DRPC VDEVHLRRFDGLLENGGVHRCVVAS+TVKAPV EVWNV+TAYETLPEIVPNLAIS
Sbjct: 302 DRPCMVDEVHLRRFDGLLENGGVHRCVVASMTVKAPVREVWNVLTAYETLPEIVPNLAIS 361
Query: 380 KILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFE 439
KILSRENNKVRILQEGCKGLLYMVLHAR V+D+CEQ EQEISF QVEGDFDSFQGKW+ E
Sbjct: 362 KILSRENNKVRILQEGCKGLLYMVLHARAVLDLCEQLEQEISFVQVEGDFDSFQGKWILE 421
Query: 440 QLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDS 499
QLG+ HTLLKY+VESKM ++S LSEAIMEEVIYEDLPSNLCAIRDY+EKRE NSL
Sbjct: 422 QLGNQHTLLKYTVESKMHRDSFLSEAIMEEVIYEDLPSNLCAIRDYIEKREASNSL---- 477
Query: 500 VETTNHTQSSDD--LTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKA 557
ET+++ + S++ ++ S+ +++ D PN +QRPRVPGLQ NIEVLKA
Sbjct: 478 -ETSDYVRYSEEQFISSSNGRDVDYHPKPADEVSDVSGPNPLRQRPRVPGLQRNIEVLKA 536
Query: 558 ELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGY 617
ELL+FI +HGQEGFMPMRKQLRKHGRVD+EKAITRMGGFRR+ASLMNL+LAYKHRKPKGY
Sbjct: 537 ELLKFILEHGQEGFMPMRKQLRKHGRVDIEKAITRMGGFRRIASLMNLSLAYKHRKPKGY 596
Query: 618 WDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKL 677
WDNLENL+EEI+RFQRSWGMDPS+MPSRK+FERAGRYDIARALEKWGGLHEVSRLLSLK+
Sbjct: 597 WDNLENLKEEITRFQRSWGMDPSYMPSRKTFERAGRYDIARALEKWGGLHEVSRLLSLKV 656
Query: 678 RHPNRRAHIIKDKKVDYV-DPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 732
RHPNR+ ++ K K+ D+V P + E + SKPYV QD QKW M L+ LDINWVE
Sbjct: 657 RHPNRQPNLTKHKRSDFVASPDMVVDEDRTTSKPYVPQDAQKWLMSLQHLDINWVE 712
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520155|ref|XP_003630366.1| cyclase/dehydrase family protein [Medicago truncatula] gi|355524388|gb|AET04842.1| cyclase/dehydrase family protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/671 (69%), Positives = 556/671 (82%), Gaps = 11/671 (1%)
Query: 64 GNGDNGKNRKEDEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFV 123
GN +NG +ED R+VHCE++VVSWRERR+KAE+ +NAD++SVWNALTDYE LADF+
Sbjct: 81 GNLNNGL----EEDGDREVHCELQVVSWRERRVKAEISINADINSVWNALTDYEHLADFI 136
Query: 124 PNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGD 183
PNL SGRIPCP+PGRIWLEQRG QRA+YWHIEARVVLDLQEL++S DREL+FSMVDGD
Sbjct: 137 PNLVWSGRIPCPFPGRIWLEQRGFQRAMYWHIEARVVLDLQELLNSEWDRELHFSMVDGD 196
Query: 184 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243
FKKFEGKWS+KSGTRSS+T LSYEVNVIPR NFPAIFLERI+RSDLPVNL+ALA R ER+
Sbjct: 197 FKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAYRVERN 256
Query: 244 FGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSS 303
NQK+P ++ + SL + S +G L E K G+ E + +S GS+P SS
Sbjct: 257 LLGNQKLPQPEDDLHKTSLVVNGSSVKKINGSLCETDKLAPGQDKEGLDTSISGSLPASS 316
Query: 304 SDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVM 363
S+LNS WG+FG+VC LD+PC VDEVHLRRFDGLLENGGVHRCVVASITVKAPV +VWNVM
Sbjct: 317 SELNSNWGIFGKVCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNVM 376
Query: 364 TAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423
++YETLPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CEQ EQEISFE
Sbjct: 377 SSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFE 436
Query: 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483
Q EGDFDSF GKW FEQLG+HHTLLKYSV+SKM++++ LSEAIMEEVIYEDLPSNLCAIR
Sbjct: 437 QAEGDFDSFHGKWTFEQLGNHHTLLKYSVDSKMRRDTFLSEAIMEEVIYEDLPSNLCAIR 496
Query: 484 DYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRP 543
DYVE ++ L + E ++ L+ S D+ +SS+ +D+ D +S QR
Sbjct: 497 DYVENQKASQFL--EVCEQNTNSGQQIILSGSGDDNNSSSA---DDISDCNVQSSSNQRS 551
Query: 544 RVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLM 603
RVPGLQ +IEVLK+ELL+F++++GQEGFMPMRKQLR HGRVD+EKAITRMGGFR++A++M
Sbjct: 552 RVPGLQRDIEVLKSELLKFVAEYGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRKIATIM 611
Query: 604 NLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKW 663
NL+LAYK+RKPKGYWDNLENL++EISRFQR WGMDPSFMPSRKSFER GR+DIARALEKW
Sbjct: 612 NLSLAYKYRKPKGYWDNLENLQDEISRFQRCWGMDPSFMPSRKSFERVGRFDIARALEKW 671
Query: 664 GGLHEVSRLLSLKLRHPNRRA--HIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAM 721
GGLHEVSRLLSLK R R ++ KDKK D+ + A+++ E S+PY+SQDT KW
Sbjct: 672 GGLHEVSRLLSLKARRKRTRQDNNLGKDKKNDHRESADVDSEINAASRPYISQDTHKWHT 731
Query: 722 KLKDLDINWVE 732
+LK+LDINWVE
Sbjct: 732 ELKELDINWVE 742
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520367|ref|XP_004167205.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212159 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/651 (70%), Positives = 529/651 (81%), Gaps = 12/651 (1%)
Query: 82 VHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW 141
V CEVEVVSWRERRI+A++ V++ ++SVWN LTDYERLADF+PNL SGRIPCP+PGRIW
Sbjct: 89 VRCEVEVVSWRERRIRADVFVHSGIESVWNVLTDYERLADFIPNLVSSGRIPCPHPGRIW 148
Query: 142 LEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSST 201
LEQRGLQRALYWHIEARVVLDLQEL++S REL FSMVDGDFKKFEGKWSI +GTRSS
Sbjct: 149 LEQRGLQRALYWHIEARVVLDLQELLNSDGSRELLFSMVDGDFKKFEGKWSINAGTRSSP 208
Query: 202 TTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIKNSFGELS 261
T LSYEVNVIPR NFPAI LE IIRSDLPVNL+ALA RAE Q++ IK+S +
Sbjct: 209 TILSYEVNVIPRFNFPAILLEXIIRSDLPVNLRALAFRAEEKSEGGQRVGNIKDSKDVVL 268
Query: 262 LPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKWGVFGQVCRLDR 321
L + D + E + + +SN GSVPP S++LN+ WGVFG+VCRLD+
Sbjct: 269 SNTLNGATCVKDEIVQENSRGGNS-------NSNLGSVPPLSNELNTNWGVFGKVCRLDK 321
Query: 322 PCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKI 381
C VDEVHLRRFDGLLENGGVHRCVVASITVKAPV EVWNV+TAYE+LPE+VPNLAISKI
Sbjct: 322 RCMVDEVHLRRFDGLLENGGVHRCVVASITVKAPVREVWNVLTAYESLPEVVPNLAISKI 381
Query: 382 LSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQL 441
LSRE+NKVRILQEGCKGLLYMVLHARVV+D+CEQ EQEISFEQVEGDFDS GKW FEQL
Sbjct: 382 LSRESNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQVEGDFDSLSGKWHFEQL 441
Query: 442 GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVE 501
GSHHTLLKYSVES+M K++ LSEA+MEEV+YEDLPSNLCAIRD +EKR + +S E
Sbjct: 442 GSHHTLLKYSVESRMHKDTFLSEALMEEVVYEDLPSNLCAIRDSIEKR-----VLKNSFE 496
Query: 502 TTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRPRVPGLQTNIEVLKAELLE 561
+ S + + ++ E + D SF+ RP+VPGLQ +IEVLKAE+L+
Sbjct: 497 ALDQGDSEEKSVSRRNNQSNGYTTTAEGVSDINGRASFRPRPKVPGLQRDIEVLKAEVLK 556
Query: 562 FISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNL 621
FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+ASLMNL+LAYKHRKPKGYWD
Sbjct: 557 FISEHGQEGFMPMRKQLRMHGRVDIEKAITRMGGFRRIASLMNLSLAYKHRKPKGYWDKF 616
Query: 622 ENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKLRHPN 681
+NL+EEI+RFQ+SWGMDPS+MPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLK+RHPN
Sbjct: 617 DNLQEEINRFQKSWGMDPSYMPSRKSFERAGRYDIARALEKWGGLHEVSRLLSLKVRHPN 676
Query: 682 RRAHIIKDKKVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDINWVE 732
R+ KD+K DYV + + E K PSKPY+SQDT+KW LK LDINWVE
Sbjct: 677 RQPSFAKDRKSDYVVVNDFDGESKAPSKPYISQDTEKWLTGLKYLDINWVE 727
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512876|ref|XP_003525141.1| PREDICTED: uncharacterized protein LOC100797103 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/739 (65%), Positives = 566/739 (76%), Gaps = 29/739 (3%)
Query: 3 TSSSFNLEATLLTTTKLVHYLPLEPPPLLHGIKCCTIFSPPPLVNKLTHSS------RIY 56
TSS+ NL + + +L PP L ++F P N S RI
Sbjct: 7 TSSTTNLGGAQPLSLR---FLSKPAPPFLS----LSLFFPSHSTNNGIAVSSTQCKPRIR 59
Query: 57 ASIVNGNGNGDNGKNRKEDEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDY 116
GNGN + + +DE+ +R+V CEV+VVSWRERR+KAE+ VNAD++SVWNALTDY
Sbjct: 60 CDKEVGNGNSNGVEEEAKDEEGEREVQCEVQVVSWRERRVKAEISVNADIESVWNALTDY 119
Query: 117 ERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELY 176
E LADF+PNL SG+IPCPYPGRIWLEQRG QR++YWHIEARVVLDLQE I+SA DREL+
Sbjct: 120 EHLADFIPNLVWSGKIPCPYPGRIWLEQRGFQRSMYWHIEARVVLDLQEFINSAWDRELH 179
Query: 177 FSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQAL 236
FSMVDGDFKKFEGKWS+KSGTRSS+T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+AL
Sbjct: 180 FSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAL 239
Query: 237 ACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNF 296
A R ER+ NQK+ + +N + S I S + + L E E +VSS
Sbjct: 240 AYRVERNISGNQKLSLPENHLDKTSSDIYESSAQKINSALCEN--------REYLVSSIP 291
Query: 297 GSVPPSSSDLN-SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAP 355
G++P SS++N + WG FG+ CRLDRPC VDE+HLRRFDGLLENGGVHRCV A+ITVKA
Sbjct: 292 GTLPMPSSEVNINNWGAFGKTCRLDRPCVVDEIHLRRFDGLLENGGVHRCVFATITVKAS 351
Query: 356 VSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQ 415
V +VWNVM++YETLPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+CE
Sbjct: 352 VRDVWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEY 411
Query: 416 HEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDL 475
EQEISFEQVEGDFDSF GKW FEQLG+HHTLLKYSVESKM+K++ LSEAIMEEVIYEDL
Sbjct: 412 LEQEISFEQVEGDFDSFHGKWTFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYEDL 471
Query: 476 PSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSET 535
PSNLCAIRDY+E R N T Q+ + D ++ EDL D
Sbjct: 472 PSNLCAIRDYIENRTASNMFEACKQNTDLGQQTVPSGFEDDDSYCSA-----EDLFDCNA 526
Query: 536 PNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGG 595
+S +QRPRVPGLQ +IEVLK+ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAI RMGG
Sbjct: 527 QSSSQQRPRVPGLQRDIEVLKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINRMGG 586
Query: 596 FRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYD 655
FR++A++MNL+LAYKHRKPKGYWDNLENL EISRFQRSWGMDPSFMPSR+SFERAGR+D
Sbjct: 587 FRKIATIMNLSLAYKHRKPKGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAGRFD 646
Query: 656 IARALEKWGGLHEVSRLLSLKLRHP-NRRAHIIKDKKV-DYVDPANLECEGKIPSKPYVS 713
IARALEKWGGL +VSRLLSLK+R +R+ ++ KDKKV D V +++ E K PS+P VS
Sbjct: 647 IARALEKWGGLRQVSRLLSLKVRRQRSRQDNLAKDKKVDDDVASPDVDSEIKTPSRPTVS 706
Query: 714 QDTQKWAMKLKDLDINWVE 732
QD Q W +LK LDINWVE
Sbjct: 707 QDPQNWLTELKQLDINWVE 725
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527540|ref|XP_003532367.1| PREDICTED: uncharacterized protein LOC100785172 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/682 (69%), Positives = 551/682 (80%), Gaps = 21/682 (3%)
Query: 54 RIYASIVNGNGNGDNGKNRKEDEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNAL 113
R + NGN NG +EDE+ +R+V CEV+VVSWRERR+KAE+ VNAD++SVWNAL
Sbjct: 58 RCDKEVGNGNNNGI-----EEDEEAEREVQCEVQVVSWRERRVKAEIPVNADIESVWNAL 112
Query: 114 TDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173
TDY+ LADF+PNL SG+IPCPYPGRIWLEQRG QR++YWHIEARVVLDLQELI+SA DR
Sbjct: 113 TDYDHLADFIPNLVWSGKIPCPYPGRIWLEQRGFQRSMYWHIEARVVLDLQELINSAWDR 172
Query: 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNL 233
EL+FSMVDGDFKKFEGKWS+KSGTRSS+T LSYEVNVIPR NFPAIFLERII+SDLPVNL
Sbjct: 173 ELHFSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIIKSDLPVNL 232
Query: 234 QALACRAERSFGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVS 293
QALA R ER+ NQK+ + +N + S I S + + L E E++V+
Sbjct: 233 QALAYRVERNISGNQKLSLPENHLDKTSSDINESSAQKINSALCEN--------KEDLVN 284
Query: 294 SNFGSVPPSSSDLN-SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITV 352
S G++P SS++N + WG FG+ CRLDRPC VDE+HLRRFDGLLENGGVHRCV ASITV
Sbjct: 285 SIPGTLPMPSSEVNINNWGAFGKSCRLDRPCMVDEIHLRRFDGLLENGGVHRCVFASITV 344
Query: 353 KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDI 412
KAPV +VW VM++YE+LPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHARVV+D+
Sbjct: 345 KAPVRDVWTVMSSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDL 404
Query: 413 CEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIY 472
CE EQEISFEQVEGDFDSFQGKW FEQLG+HHTLLKYS+ESKM+K++ LSEAIMEEVIY
Sbjct: 405 CEYLEQEISFEQVEGDFDSFQGKWTFEQLGNHHTLLKYSLESKMRKDTFLSEAIMEEVIY 464
Query: 473 EDLPSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVD 532
EDLPSNLCAIRDY+E N A++ +E +S T S S EDL D
Sbjct: 465 EDLPSNLCAIRDYIE-----NKTASNILEACKQNTNSGQQTVPSGFEDDDSYCSAEDLSD 519
Query: 533 SETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITR 592
+S +QRPRVPGLQ +IEVLK+ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAI R
Sbjct: 520 CNAQSSSQQRPRVPGLQRDIEVLKSELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAINR 579
Query: 593 MGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAG 652
GGFR++A++MNL+LAYKHRKPKGYWDNLENL EISRFQRSWGMDPSFMPSR+SFERAG
Sbjct: 580 KGGFRKIATIMNLSLAYKHRKPKGYWDNLENLHYEISRFQRSWGMDPSFMPSRRSFERAG 639
Query: 653 RYDIARALEKWGGLHEVSRLLSLKLRHP-NRRAHIIKDKKV-DYVDPANLECEGKIPSKP 710
R+DIARALEKWGGL +VSRLLSLK+R +R+ + KDKKV D V +++ E K PS+P
Sbjct: 640 RFDIARALEKWGGLRQVSRLLSLKVRRQRSRQGKLAKDKKVDDDVASPDVDREIKTPSRP 699
Query: 711 YVSQDTQKWAMKLKDLDINWVE 732
VSQD QKW +LK LDINWVE
Sbjct: 700 TVSQDPQKWLTELKQLDINWVE 721
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518814|ref|XP_003528072.1| PREDICTED: uncharacterized protein LOC100777483 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/680 (68%), Positives = 548/680 (80%), Gaps = 25/680 (3%)
Query: 65 NGDNGKNRKEDEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVP 124
NG +G + +E+ +R+VHCEV+V+SWRERR+ A++ V+AD +SVWNALTDYE LADF+P
Sbjct: 58 NGKDGSFEQHEEEGEREVHCEVQVISWRERRVNAQITVDADTESVWNALTDYEHLADFIP 117
Query: 125 NLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDF 184
NL SGRIPCPYPGRIWLEQRG QRA+YWHIEARVVLDLQE+++SA DREL+FSMVDGDF
Sbjct: 118 NLVWSGRIPCPYPGRIWLEQRGFQRAMYWHIEARVVLDLQEVVNSAWDRELHFSMVDGDF 177
Query: 185 KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244
KKF+GKWS+KSGTRSST LSYEVNVIPR NFPAIFLERIIRSDLPVNL+ALA RAER+F
Sbjct: 178 KKFDGKWSVKSGTRSSTAILSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAYRAERNF 237
Query: 245 GWNQKIPMIKNSFGELSLPI-----------LASPSLDFDGGLPEKGKAPHGEFNENIVS 293
QK+P+ +N + + I L+ +G L E K P E + I +
Sbjct: 238 VGYQKLPVSENHLHKTYVAINGSSVKKINGALSESFKKMNGALCESDKLPPAENKKEIAT 297
Query: 294 SNFGSVPPSSSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVK 353
S GS+ SSS++ S WGVFG+VCRLDRP VDEVHLRRFDGLLENGGVHRCVVASITVK
Sbjct: 298 SVSGSMLTSSSEVRSNWGVFGKVCRLDRPRMVDEVHLRRFDGLLENGGVHRCVVASITVK 357
Query: 354 APVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDIC 413
A V EVWN++TAYETLP+IVPNLAISK++SR+NNKVRILQEGCKGLLYMVLHARVV+D+C
Sbjct: 358 AHVCEVWNILTAYETLPKIVPNLAISKVVSRDNNKVRILQEGCKGLLYMVLHARVVLDLC 417
Query: 414 EQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYE 473
E EQEISFEQVEGDFDSF+GKW+FEQLG+HHTLLKYSVESKM+K++ LSEAIMEEVIYE
Sbjct: 418 EYLEQEISFEQVEGDFDSFRGKWIFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYE 477
Query: 474 DLPSNLCAIRDYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDS 533
DLPSNL AIRDY+E N A+ E +S SS L +S E++ +
Sbjct: 478 DLPSNLSAIRDYIE-----NMNASKYSEVCEQNMNSGQQILSSGYLKDDNSGSAEEVPNC 532
Query: 534 ETPNSFKQRPRVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRM 593
+ S +QR +VPGLQ NI+VL++ELL+FI++HGQEGFMPMRKQLR HGRVD+EKAITRM
Sbjct: 533 DVQCSSQQRSKVPGLQRNIKVLESELLKFIAEHGQEGFMPMRKQLRLHGRVDIEKAITRM 592
Query: 594 GGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGR 653
GGFR++A+++NL+LAYKHRKPKGYWDNLENL+EEISRFQR WG+DPSFMPSRKSFERAGR
Sbjct: 593 GGFRKIATILNLSLAYKHRKPKGYWDNLENLQEEISRFQRGWGIDPSFMPSRKSFERAGR 652
Query: 654 YDIARALEKWGGLHEVSRLLSLKLRHPNRRAHIIKDKKV-DYVDPANLECEGKIPSKPYV 712
YDIARALEKWGGLHEVSRLLSLK+R +R+ ++ KDK+ D+ D E K P +
Sbjct: 653 YDIARALEKWGGLHEVSRLLSLKVRQRSRQDNLAKDKRSGDHTDS-----EMKTPC---I 704
Query: 713 SQDTQKWAMKLKDLDINWVE 732
SQDTQKW KLK LDINW E
Sbjct: 705 SQDTQKWLTKLKHLDINWFE 724
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22326677|ref|NP_680157.1| uncharacterized protein [Arabidopsis thaliana] gi|13548330|emb|CAC35877.1| putative protein [Arabidopsis thaliana] gi|26450803|dbj|BAC42510.1| unknown protein [Arabidopsis thaliana] gi|29029030|gb|AAO64894.1| At5g08720 [Arabidopsis thaliana] gi|332003958|gb|AED91341.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/733 (64%), Positives = 553/733 (75%), Gaps = 49/733 (6%)
Query: 28 PPLLHGIKCCTIFSPPPLVNKLTHSS---RIYASIVN-----------------GNGNGD 67
P L HG+ + P ++ L S R+++SI G GD
Sbjct: 7 PHLSHGVHTINFLNEPVFLSVLLPSPSRIRVFSSISTSGIGGGVAKCHGTRHSGAGGRGD 66
Query: 68 NGKNRKE----DEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFV 123
NG R DE +RKV CEV+V+SWRERRI+ E+ V++D SVWN LTDYERLADF+
Sbjct: 67 NGLRRDSGLGFDERGERKVRCEVDVISWRERRIRGEIWVDSDSQSVWNVLTDYERLADFI 126
Query: 124 PNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGD 183
PNL SGRIPCP+PGRIWLEQRGLQRALYWHIEARVVLDL E + S + REL+FSMVDGD
Sbjct: 127 PNLVWSGRIPCPHPGRIWLEQRGLQRALYWHIEARVVLDLHECLDSPNGRELHFSMVDGD 186
Query: 184 FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243
FKKFEGKWS+KSG RS T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+A+A +AE+
Sbjct: 187 FKKFEGKWSVKSGIRSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAVARQAEKI 246
Query: 244 FGWNQKIPMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSS 303
+ K +I++ G +S S ++FD E+ V+S+ GS+ S
Sbjct: 247 YKDCGKPSIIEDLLGIISSQPAPSNGIEFDSLATERS-----------VASSVGSLA-HS 294
Query: 304 SDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVM 363
++LN+ WGV+G+ C+LD+PC VDEVHLRRFDGLLENGGVHRC VASITVKAPV EVW V+
Sbjct: 295 NELNNNWGVYGKACKLDKPCTVDEVHLRRFDGLLENGGVHRCAVASITVKAPVCEVWKVL 354
Query: 364 TAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423
T+YE+LPEIVPNLAISKILSR+NNKVRILQEGCKGLLYMVLHAR V+D+ E EQEI FE
Sbjct: 355 TSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARAVLDLHEIREQEIRFE 414
Query: 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483
QVEGDFDS +GKW+FEQLGSHHTLLKY+VESKM+K+S LSEAIMEEVIYEDLPSNLCAIR
Sbjct: 415 QVEGDFDSLEGKWIFEQLGSHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSNLCAIR 474
Query: 484 DYVEKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSDNEDLVDSETPNSFKQRP 543
DY+EKR G+ S + +ET Q S++ SS + +N+D D KQR
Sbjct: 475 DYIEKR-GEKSSESCKLET---CQVSEETCSSSRAKSVETVYNNDDGSDQT-----KQRR 525
Query: 544 RVPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLM 603
R+PGLQ +IEVLK+E+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+A +M
Sbjct: 526 RIPGLQRDIEVLKSEILKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIALMM 585
Query: 604 NLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKW 663
NL+LAYKHRKPKGYWDNLENL+EEI RFQ+SWGMDPSFMPSRKSFERAGRYDIARALEKW
Sbjct: 586 NLSLAYKHRKPKGYWDNLENLQEEIGRFQQSWGMDPSFMPSRKSFERAGRYDIARALEKW 645
Query: 664 GGLHEVSRLLSLKLRHPNRRAHIIKDKKVDYV----DPANLECEGKIPSKPYVSQDTQKW 719
GGLHEVSRLL+L +RHPNR+ + KD + A+L +KPYVSQDT+KW
Sbjct: 646 GGLHEVSRLLALNVRHPNRQLNSRKDNGNTILRTESTEADLNSTVNKNNKPYVSQDTEKW 705
Query: 720 AMKLKDLDINWVE 732
LKDLDINWV+
Sbjct: 706 LYNLKDLDINWVQ 718
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| TAIR|locus:504956340 | 719 | AT5G08720 "AT5G08720" [Arabido | 0.868 | 0.884 | 0.674 | 1.9e-234 | |
| TAIR|locus:2133442 | 288 | AT4G01650 "AT4G01650" [Arabido | 0.214 | 0.545 | 0.342 | 3.2e-17 |
| TAIR|locus:504956340 AT5G08720 "AT5G08720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2261 (801.0 bits), Expect = 1.9e-234, P = 1.9e-234
Identities = 447/663 (67%), Positives = 519/663 (78%)
Query: 75 DEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPC 134
DE +RKV CEV+V+SWRERRI+ E+ V++D SVWN LTDYERLADF+PNL SGRIPC
Sbjct: 78 DERGERKVRCEVDVISWRERRIRGEIWVDSDSQSVWNVLTDYERLADFIPNLVWSGRIPC 137
Query: 135 PYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIK 194
P+PGRIWLEQRGLQRALYWHIEARVVLDL E + S + REL+FSMVDGDFKKFEGKWS+K
Sbjct: 138 PHPGRIWLEQRGLQRALYWHIEARVVLDLHECLDSPNGRELHFSMVDGDFKKFEGKWSVK 197
Query: 195 SGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIPMIK 254
SG RS T LSYEVNVIPR NFPAIFLERIIRSDLPVNL+A+A +AE+ + K +I+
Sbjct: 198 SGIRSVGTVLSYEVNVIPRFNFPAIFLERIIRSDLPVNLRAVARQAEKIYKDCGKPSIIE 257
Query: 255 NSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIXXXXXXXXXXXXXDLNSKWGVFG 314
+ G +S S ++FD E+ A +LN+ WGV+G
Sbjct: 258 DLLGIISSQPAPSNGIEFDSLATERSVA------------SSVGSLAHSNELNNNWGVYG 305
Query: 315 QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVP 374
+ C+LD+PC VDEVHLRRFDGLLENGGVHRC VASITVKAPV EVW V+T+YE+LPEIVP
Sbjct: 306 KACKLDKPCTVDEVHLRRFDGLLENGGVHRCAVASITVKAPVCEVWKVLTSYESLPEIVP 365
Query: 375 NLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSFQG 434
NLAISKILSR+NNKVRILQEGCKGLLYMVLHAR V+D+ E EQEI FEQVEGDFDS +G
Sbjct: 366 NLAISKILSRDNNKVRILQEGCKGLLYMVLHARAVLDLHEIREQEIRFEQVEGDFDSLEG 425
Query: 435 KWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 494
KW+FEQLGSHHTLLKY+VESKM+K+S LSEAIMEEVIYEDLPSNLCAIRDY+EKR G+ S
Sbjct: 426 KWIFEQLGSHHTLLKYTVESKMRKDSFLSEAIMEEVIYEDLPSNLCAIRDYIEKR-GEKS 484
Query: 495 LANDSVETTNHXXXXXXXXXXXXXXXXXXXXDNEDLVDSETPNSFKQRPRVPGLQTNIEV 554
+ +ET +N+D D +T KQR R+PGLQ +IEV
Sbjct: 485 SESCKLETCQ---VSEETCSSSRAKSVETVYNNDDGSD-QT----KQRRRIPGLQRDIEV 536
Query: 555 LKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKP 614
LK+E+L+FIS+HGQEGFMPMRKQLR HGRVD+EKAITRMGGFRR+A +MNL+LAYKHRKP
Sbjct: 537 LKSEILKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIALMMNLSLAYKHRKP 596
Query: 615 KGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLS 674
KGYWDNLENL+EEI RFQ+SWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLL+
Sbjct: 597 KGYWDNLENLQEEIGRFQQSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLA 656
Query: 675 LKLRHPNRRAHIIKDK-----KVDYVDPANLECEGKIPSKPYVSQDTQKWAMKLKDLDIN 729
L +RHPNR+ + KD + + + A+L +KPYVSQDT+KW LKDLDIN
Sbjct: 657 LNVRHPNRQLNSRKDNGNTILRTESTE-ADLNSTVNKNNKPYVSQDTEKWLYNLKDLDIN 715
Query: 730 WVE 732
WV+
Sbjct: 716 WVQ 718
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| TAIR|locus:2133442 AT4G01650 "AT4G01650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 60/175 (34%), Positives = 94/175 (53%)
Query: 85 EVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQ 144
E++ + RRI++++ + A +DSVW+ LTDYE+L+DF+P L S + R+ L Q
Sbjct: 106 ELKKLEKSSRRIRSKIGMEASLDSVWSVLTDYEKLSDFIPGLVVSELVE-KEGNRVRLFQ 164
Query: 145 RGLQR-ALYWHIEARVVLDLQE----LIHSASDRELYFSMVDGDFKKFEGKWSIKS---G 196
G Q AL A+ VLD E ++ RE+ F MV+GDF+ FEGKWSI+ G
Sbjct: 165 MGQQNLALGLKFNAKAVLDCYEKELEVLPHGRRREIDFKMVEGDFQLFEGKWSIEQLDKG 224
Query: 197 TRSST---------TTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242
TTL+Y V+V P++ P +E + ++ NL ++ A++
Sbjct: 225 IHGEALDLQFKDFRTTLAYTVDVKPKMWLPVRLVEGRLCKEIRTNLMSIRDAAQK 279
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019264001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (735 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 732 | |||
| cd08866 | 144 | cd08866, SRPBCC_11, Ligand-binding SRPBCC domain o | 5e-51 | |
| cd08866 | 144 | cd08866, SRPBCC_11, Ligand-binding SRPBCC domain o | 1e-46 | |
| pfam03364 | 125 | pfam03364, Polyketide_cyc, Polyketide cyclase / de | 3e-16 | |
| pfam03364 | 125 | pfam03364, Polyketide_cyc, Polyketide cyclase / de | 5e-14 | |
| cd07812 | 141 | cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/Cox | 2e-07 | |
| cd08861 | 142 | cd08861, OtcD1_ARO-CYC_like, N-terminal and C-term | 1e-05 | |
| pfam10604 | 140 | pfam10604, Polyketide_cyc2, Polyketide cyclase / d | 1e-04 | |
| cd07812 | 141 | cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/Cox | 3e-04 | |
| cd07821 | 140 | cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance | 0.003 |
| >gnl|CDD|176875 cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 5e-51
Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 5/146 (3%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 405
VVA + V AP VW V+T Y+ L E +PNLA S++L R N+V + Q G +G+L+
Sbjct: 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFE 60
Query: 406 ARVVMDICEQHE--QEISFEQVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLL 462
ARVV+++ E+ E +E+ FE VEGDF F+G W E L TLL Y VE K +
Sbjct: 61 ARVVLELREREEFPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAP- 119
Query: 463 SEAIMEEVIYEDLPSNLCAIRDYVEK 488
++E V+ +DLP+NL AIR E
Sbjct: 120 -VFLVEFVLRQDLPTNLLAIRAEAES 144
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 144 |
| >gnl|CDD|176875 cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-46
Identities = 64/147 (43%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155
+ A + V A ++VW LTDY+ LA+F+PNLA S + R+ LEQ G Q L++
Sbjct: 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERN-GNRVVLEQTGKQGILFFKF 59
Query: 156 EARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN 215
EARVVL+L+E REL F MV+GDFK+FEG W ++ T L+YEV V P
Sbjct: 60 EARVVLELRE--REEFPRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF 117
Query: 216 FPAIFLERIIRSDLPVNLQALACRAER 242
P +E ++R DLP NL A+ AE
Sbjct: 118 APVFLVEFVLRQDLPTNLLAIRAEAES 144
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 144 |
| >gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-16
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 352 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMD 411
V AP +VW ++T E PE +P ++L R+ + G L ARV +
Sbjct: 1 VPAPAEQVWALVTDVERYPEFLPWCKSVEVLDRDGSLADW--RVAFGGLRRSFTARVTLQ 58
Query: 412 ICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI 471
E+ I V+GDF +G W FE G T +K ++E + S L A++ V
Sbjct: 59 PPER----IEMVLVDGDFKRLEGSWRFEPGGP-GTRVKVTLELDFEFASPLPGALLGFVF 113
Query: 472 YEDLPSNLCAIR 483
L + L A R
Sbjct: 114 RRVLRTLLEAFR 125
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This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125 |
| >gnl|CDD|217515 pfam03364, Polyketide_cyc, Polyketide cyclase / dehydrase and lipid transport | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 5e-14
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 102 VNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVL 161
V A + VW +TD ER +F+P S + + ARV L
Sbjct: 1 VPAPAEQVWALVTDVERYPEFLPWCK-SVEVLDRDGSLADWRVAFGGLRRSF--TARVTL 57
Query: 162 DLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221
+ +VDGDFK+ EG W + G + ++ E++ P L
Sbjct: 58 QP--------PERIEMVLVDGDFKRLEGSWRFEPGGPGTRVKVTLELDFEFASPLPGALL 109
Query: 222 ERIIRSDLPVNLQALA 237
+ R L L+A
Sbjct: 110 GFVFRRVLRTLLEAFR 125
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This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. The family also includes proteins which are involved in the binding/transport of lipids. Length = 125 |
| >gnl|CDD|176854 cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVL 404
V ASI + AP VW++++ E PE P L ++L V G KG + L
Sbjct: 1 VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTL 60
Query: 405 HARVVMDICEQHEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVE 453
+ V + F G G+W E G T + Y+VE
Sbjct: 61 TSEVTEVD---PPRPGRFRVTGGGGGVDGTGEWRLEPEGDGGTRVTYTVE 107
|
SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 141 |
| >gnl|CDD|176870 cd08861, OtcD1_ARO-CYC_like, N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 21/152 (13%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG-LLYMV- 403
V S+TV AP +V++++ E PE +P + V L+ L M
Sbjct: 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPTV-----------HVERLELDGGVERLRMWA 49
Query: 404 ------LHARVVMDICEQHEQEISFEQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESK 455
+H + + + I F Q E S G+W FE LG T + +
Sbjct: 50 TAFDGSVHTWTSRRVLDPEGRRIVFRQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFT 109
Query: 456 MQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487
+ +S + + + + + L A+R E
Sbjct: 110 LGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141
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This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this gene results in the production of novel polyketides having shorter chain lengths (by up to 10 carbons) than OTC. Monodomain ARO/CYCs have a single ARO/CYC domain, and are often associated with C9-C14 first ring cyclizations, these latter domains belong to a different subfamily in the SRPBCC superfamily. Length = 142 |
| >gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
++ + + A + VW ++D+E + P + R+ LE G +
Sbjct: 3 KVSVSITIAAPPEKVWALVSDFENWPRWHPGVL-----------RVELEGGGPLGVV-GT 50
Query: 155 IEARVVLDLQELIHSASDRELYFSM---VDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVI 211
+ A ++E + + G W++ + T + E +
Sbjct: 51 LRAGGGRTVREELVEYDPAGRRLEYRIVEPLGVTNYVGTWTVTPAGGGTRVTWTGEFDPP 110
Query: 212 PRLNFPAIFLERIIRSDLPVNLQALACRAE 241
L + ++ D+ L L E
Sbjct: 111 GPLGLNGPAAAKAVKGDIEAGLDNLKALLE 140
|
This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily. Length = 140 |
| >gnl|CDD|176854 cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 14/150 (9%)
Query: 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPC--PYPGRIWLEQRGLQRALYW 153
++A + + A ++VW+ L+D ER ++ P L + G ++ R R L
Sbjct: 1 VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTL 60
Query: 154 HIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPR 213
E V + + G G+W ++ T ++Y V P
Sbjct: 61 TSEVTEVDPPRPGRFRVTG--------GGGGVDGTGEWRLEP-EGDGGTRVTYTVEYDPP 111
Query: 214 LNFPAIF---LERIIRSDLPVNLQALACRA 240
+F L ++ +L L+AL R
Sbjct: 112 GPLLKVFALLLAGALKRELAALLRALKARL 141
|
SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. Length = 141 |
| >gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLA-CSGRIPCPYPGRIWLEQRGLQRALYW 153
++ + ++A D VW L+D+ L + P +A C P G + R +
Sbjct: 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAV--------RTVTL 53
Query: 154 HIEARVVLDLQELIH-SASDRELYFSMVDGD--FKKFEGKWSIKS-GTRSSTTTLSYEVN 209
V + L+ ++R + +V+G K + + G + T + E +
Sbjct: 54 KDGGTVR---ERLLALDDAERRYSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFD 110
Query: 210 VIPRLNFPAI--FLERIIRSDLPVNLQALACRAE 241
L FL + R+ L AL E
Sbjct: 111 PPEGLTDELARAFLTGVYRA----GLAALKAALE 140
|
The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| cd08866 | 144 | SRPBCC_11 Ligand-binding SRPBCC domain of an uncha | 99.89 | |
| cd08866 | 144 | SRPBCC_11 Ligand-binding SRPBCC domain of an uncha | 99.86 | |
| PRK10724 | 158 | hypothetical protein; Provisional | 99.83 | |
| cd07813 | 138 | COQ10p_like Coenzyme Q-binding protein COQ10p and | 99.82 | |
| cd07813 | 138 | COQ10p_like Coenzyme Q-binding protein COQ10p and | 99.8 | |
| cd08861 | 142 | OtcD1_ARO-CYC_like N-terminal and C-terminal aroma | 99.76 | |
| cd08860 | 146 | TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom | 99.76 | |
| PF03364 | 130 | Polyketide_cyc: Polyketide cyclase / dehydrase and | 99.74 | |
| PRK10724 | 158 | hypothetical protein; Provisional | 99.73 | |
| PF03364 | 130 | Polyketide_cyc: Polyketide cyclase / dehydrase and | 99.72 | |
| COG2867 | 146 | Oligoketide cyclase/lipid transport protein [Lipid | 99.71 | |
| cd08861 | 142 | OtcD1_ARO-CYC_like N-terminal and C-terminal aroma | 99.71 | |
| cd07819 | 140 | SRPBCC_2 Ligand-binding SRPBCC domain of an unchar | 99.68 | |
| cd08860 | 146 | TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom | 99.67 | |
| cd07819 | 140 | SRPBCC_2 Ligand-binding SRPBCC domain of an unchar | 99.66 | |
| cd07817 | 139 | SRPBCC_8 Ligand-binding SRPBCC domain of an unchar | 99.58 | |
| PF10604 | 139 | Polyketide_cyc2: Polyketide cyclase / dehydrase an | 99.52 | |
| cd08865 | 140 | SRPBCC_10 Ligand-binding SRPBCC domain of an uncha | 99.52 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 99.5 | |
| cd07817 | 139 | SRPBCC_8 Ligand-binding SRPBCC domain of an unchar | 99.5 | |
| cd07818 | 150 | SRPBCC_1 Ligand-binding SRPBCC domain of an unchar | 99.48 | |
| cd08862 | 138 | SRPBCC_Smu440-like Ligand-binding SRPBCC domain of | 99.46 | |
| cd07821 | 140 | PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), | 99.46 | |
| cd07821 | 140 | PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), | 99.45 | |
| cd05018 | 144 | CoxG Carbon monoxide dehydrogenase subunit G (CoxG | 99.43 | |
| cd07824 | 146 | SRPBCC_6 Ligand-binding SRPBCC domain of an unchar | 99.43 | |
| cd08865 | 140 | SRPBCC_10 Ligand-binding SRPBCC domain of an uncha | 99.42 | |
| cd05018 | 144 | CoxG Carbon monoxide dehydrogenase subunit G (CoxG | 99.38 | |
| PF10604 | 139 | Polyketide_cyc2: Polyketide cyclase / dehydrase an | 99.38 | |
| cd07824 | 146 | SRPBCC_6 Ligand-binding SRPBCC domain of an unchar | 99.37 | |
| cd07822 | 141 | SRPBCC_4 Ligand-binding SRPBCC domain of an unchar | 99.36 | |
| cd07818 | 150 | SRPBCC_1 Ligand-binding SRPBCC domain of an unchar | 99.33 | |
| cd08862 | 138 | SRPBCC_Smu440-like Ligand-binding SRPBCC domain of | 99.32 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 99.28 | |
| cd07820 | 137 | SRPBCC_3 Ligand-binding SRPBCC domain of an unchar | 99.27 | |
| COG2867 | 146 | Oligoketide cyclase/lipid transport protein [Lipid | 99.23 | |
| cd07814 | 139 | SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- | 99.22 | |
| COG5637 | 217 | Predicted integral membrane protein [Function unkn | 99.2 | |
| cd07812 | 141 | SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR | 99.19 | |
| cd07823 | 146 | SRPBCC_5 Ligand-binding SRPBCC domain of an unchar | 99.19 | |
| cd07823 | 146 | SRPBCC_5 Ligand-binding SRPBCC domain of an unchar | 99.19 | |
| cd07822 | 141 | SRPBCC_4 Ligand-binding SRPBCC domain of an unchar | 99.15 | |
| cd08906 | 209 | START_STARD3-like Cholesterol-binding START domain | 99.12 | |
| cd08905 | 209 | START_STARD1-like Cholesterol-binding START domain | 99.12 | |
| cd07825 | 144 | SRPBCC_7 Ligand-binding SRPBCC domain of an unchar | 99.11 | |
| cd07812 | 141 | SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR | 99.11 | |
| cd07820 | 137 | SRPBCC_3 Ligand-binding SRPBCC domain of an unchar | 99.1 | |
| cd08868 | 208 | START_STARD1_3_like Cholesterol-binding START doma | 99.05 | |
| cd07814 | 139 | SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- | 99.01 | |
| cd08911 | 207 | START_STARD7-like Lipid-binding START domain of ma | 98.95 | |
| cd08877 | 215 | START_2 Uncharacterized subgroup of the steroidoge | 98.94 | |
| cd08874 | 205 | START_STARD9-like C-terminal START domain of mamma | 98.91 | |
| cd08870 | 209 | START_STARD2_7-like Lipid-binding START domain of | 98.84 | |
| cd08871 | 222 | START_STARD10-like Lipid-binding START domain of m | 98.83 | |
| cd07825 | 144 | SRPBCC_7 Ligand-binding SRPBCC domain of an unchar | 98.78 | |
| cd07816 | 148 | Bet_v1-like Ligand-binding bet_v_1 domain of major | 98.74 | |
| cd08872 | 235 | START_STARD11-like Ceramide-binding START domain o | 98.73 | |
| cd08910 | 207 | START_STARD2-like Lipid-binding START domain of ma | 98.72 | |
| cd08869 | 197 | START_RhoGAP C-terminal lipid-binding START domain | 98.72 | |
| cd08903 | 208 | START_STARD5-like Lipid-binding START domain of ma | 98.7 | |
| KOG3177 | 227 | consensus Oligoketide cyclase/lipid transport prot | 98.69 | |
| cd08906 | 209 | START_STARD3-like Cholesterol-binding START domain | 98.67 | |
| cd08913 | 240 | START_STARD14-like Lipid-binding START domain of m | 98.63 | |
| cd08905 | 209 | START_STARD1-like Cholesterol-binding START domain | 98.6 | |
| cd08867 | 206 | START_STARD4_5_6-like Lipid-binding START domain o | 98.6 | |
| cd00177 | 193 | START Lipid-binding START domain of mammalian STAR | 98.58 | |
| cd08877 | 215 | START_2 Uncharacterized subgroup of the steroidoge | 98.58 | |
| COG3427 | 146 | Carbon monoxide dehydrogenase subunit G, CoxG [Ene | 98.52 | |
| cd08893 | 136 | SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi | 98.5 | |
| smart00234 | 206 | START in StAR and phosphatidylcholine transfer pro | 98.49 | |
| cd08914 | 236 | START_STARD15-like Lipid-binding START domain of m | 98.48 | |
| cd08868 | 208 | START_STARD1_3_like Cholesterol-binding START doma | 98.45 | |
| cd07816 | 148 | Bet_v1-like Ligand-binding bet_v_1 domain of major | 98.45 | |
| cd08871 | 222 | START_STARD10-like Lipid-binding START domain of m | 98.44 | |
| PF06240 | 140 | COXG: Carbon monoxide dehydrogenase subunit G (Cox | 98.41 | |
| cd08908 | 204 | START_STARD12-like C-terminal lipid-binding START | 98.41 | |
| cd08874 | 205 | START_STARD9-like C-terminal START domain of mamma | 98.4 | |
| COG5637 | 217 | Predicted integral membrane protein [Function unkn | 98.39 | |
| cd08873 | 235 | START_STARD14_15-like Lipid-binding START domain o | 98.39 | |
| cd08899 | 157 | SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan | 98.35 | |
| cd08870 | 209 | START_STARD2_7-like Lipid-binding START domain of | 98.31 | |
| cd00177 | 193 | START Lipid-binding START domain of mammalian STAR | 98.3 | |
| cd08903 | 208 | START_STARD5-like Lipid-binding START domain of ma | 98.27 | |
| cd08911 | 207 | START_STARD7-like Lipid-binding START domain of ma | 98.26 | |
| cd08893 | 136 | SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi | 98.24 | |
| cd08869 | 197 | START_RhoGAP C-terminal lipid-binding START domain | 98.24 | |
| PF01852 | 206 | START: START domain; InterPro: IPR002913 START (St | 98.23 | |
| smart00234 | 206 | START in StAR and phosphatidylcholine transfer pro | 98.23 | |
| cd08894 | 139 | SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan | 98.22 | |
| cd08899 | 157 | SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan | 98.19 | |
| PF06240 | 140 | COXG: Carbon monoxide dehydrogenase subunit G (Cox | 98.14 | |
| cd08898 | 145 | SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan | 98.13 | |
| cd08913 | 240 | START_STARD14-like Lipid-binding START domain of m | 98.11 | |
| cd08897 | 133 | SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan | 98.07 | |
| cd08908 | 204 | START_STARD12-like C-terminal lipid-binding START | 98.06 | |
| cd08872 | 235 | START_STARD11-like Ceramide-binding START domain o | 98.06 | |
| cd08896 | 146 | SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan | 98.05 | |
| cd08873 | 235 | START_STARD14_15-like Lipid-binding START domain o | 98.03 | |
| cd08867 | 206 | START_STARD4_5_6-like Lipid-binding START domain o | 98.02 | |
| cd08910 | 207 | START_STARD2-like Lipid-binding START domain of ma | 98.01 | |
| COG3427 | 146 | Carbon monoxide dehydrogenase subunit G, CoxG [Ene | 97.97 | |
| PF00407 | 151 | Bet_v_1: Pathogenesis-related protein Bet v I fami | 97.93 | |
| cd08914 | 236 | START_STARD15-like Lipid-binding START domain of m | 97.88 | |
| cd08895 | 146 | SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan | 97.84 | |
| cd08898 | 145 | SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan | 97.84 | |
| PF01852 | 206 | START: START domain; InterPro: IPR002913 START (St | 97.82 | |
| cd08909 | 205 | START_STARD13-like C-terminal lipid-binding START | 97.78 | |
| cd08904 | 204 | START_STARD6-like Lipid-binding START domain of ma | 97.78 | |
| cd08901 | 136 | SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan | 97.78 | |
| cd07826 | 142 | SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan | 97.75 | |
| PF08327 | 124 | AHSA1: Activator of Hsp90 ATPase homolog 1-like pr | 97.75 | |
| cd08900 | 143 | SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan | 97.74 | |
| cd08897 | 133 | SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan | 97.71 | |
| cd08891 | 149 | SRPBCC_CalC Ligand-binding SRPBCC domain of Microm | 97.68 | |
| KOG3177 | 227 | consensus Oligoketide cyclase/lipid transport prot | 97.6 | |
| cd08894 | 139 | SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan | 97.59 | |
| cd08891 | 149 | SRPBCC_CalC Ligand-binding SRPBCC domain of Microm | 97.47 | |
| cd08909 | 205 | START_STARD13-like C-terminal lipid-binding START | 97.45 | |
| PF08327 | 124 | AHSA1: Activator of Hsp90 ATPase homolog 1-like pr | 97.36 | |
| cd08901 | 136 | SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan | 97.35 | |
| cd08896 | 146 | SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan | 97.32 | |
| cd08895 | 146 | SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan | 97.29 | |
| cd08904 | 204 | START_STARD6-like Lipid-binding START domain of ma | 97.28 | |
| PF00407 | 151 | Bet_v_1: Pathogenesis-related protein Bet v I fami | 97.16 | |
| COG3832 | 149 | Uncharacterized conserved protein [Function unknow | 96.96 | |
| cd08902 | 202 | START_STARD4-like Lipid-binding START domain of ma | 96.86 | |
| cd08900 | 143 | SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan | 96.86 | |
| cd07826 | 142 | SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan | 96.81 | |
| cd08902 | 202 | START_STARD4-like Lipid-binding START domain of ma | 96.8 | |
| cd08892 | 126 | SRPBCC_Aha1 Putative hydrophobic ligand-binding SR | 96.75 | |
| PTZ00220 | 132 | Activator of HSP-90 ATPase; Provisional | 96.53 | |
| PF10698 | 159 | DUF2505: Protein of unknown function (DUF2505); In | 96.19 | |
| cd08907 | 205 | START_STARD8-like C-terminal lipid-binding START d | 96.14 | |
| cd08892 | 126 | SRPBCC_Aha1 Putative hydrophobic ligand-binding SR | 96.12 | |
| cd08907 | 205 | START_STARD8-like C-terminal lipid-binding START d | 95.83 | |
| COG4276 | 153 | Uncharacterized conserved protein [Function unknow | 95.5 | |
| COG3832 | 149 | Uncharacterized conserved protein [Function unknow | 95.44 | |
| PF10698 | 159 | DUF2505: Protein of unknown function (DUF2505); In | 95.14 | |
| PTZ00220 | 132 | Activator of HSP-90 ATPase; Provisional | 94.8 | |
| PLN00188 | 719 | enhanced disease resistance protein (EDR2); Provis | 93.24 | |
| KOG2761 | 219 | consensus START domain-containing proteins involve | 92.92 | |
| PLN00188 | 719 | enhanced disease resistance protein (EDR2); Provis | 88.49 | |
| PF08982 | 149 | DUF1857: Domain of unknown function (DUF1857); Int | 88.13 | |
| cd08864 | 208 | SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- | 86.13 | |
| cd08863 | 141 | SRPBCC_DUF1857 DUF1857, an uncharacterized ligand- | 84.16 | |
| COG4276 | 153 | Uncharacterized conserved protein [Function unknow | 83.14 | |
| KOG2761 | 219 | consensus START domain-containing proteins involve | 82.83 |
| >cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=184.39 Aligned_cols=144 Identities=44% Similarity=0.713 Sum_probs=127.0
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|++++.|+||++.||++|+||++||+|+|.++++++++. .++..++++.+..+++++.+...+++++++..+ .++.|
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~i 77 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLER-NGNRVVLEQTGKQGILFFKFEARVVLELREREE--FPREL 77 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEc-CCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecC--CCceE
Confidence 478999999999999999999999999999999999975 566667788877777766666666777776552 46899
Q ss_pred EEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 176 YFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 176 ~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+|++++|+|+.|.|+|++++.+.+++|+|+|+++++|+.++|.++++.++++.+..+|.+||++||+
T Consensus 78 ~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 78 DFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999986336899999999999999999999999999999999999999984
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=177.28 Aligned_cols=141 Identities=44% Similarity=0.737 Sum_probs=122.0
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeC--CCeEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH--EQEISFE 423 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~--~rrIsf~ 423 (732)
+++++.|+||+++||++|+|+++||+|+|+|++++++++.+++.++.+.+..+++...+..++++++.+.+ ++.|.|+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 80 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE 80 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence 35789999999999999999999999999999999998877777666665555554445666666666544 6899999
Q ss_pred EEecCCcceeEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 424 QVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gd-G~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+++|+|..+.|.|+|++.++ |+|+++|.+.++|. .++|..+++.++++.+..+|++||++||+
T Consensus 81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~--~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPD--FFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987 68999999999985 56889999999999999999999999984
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >PRK10724 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=177.68 Aligned_cols=145 Identities=15% Similarity=0.257 Sum_probs=127.6
Q ss_pred ceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEE-EEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 341 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 341 g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~-q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..|.++..++.|++|+++||+++.|+++||+|+|+|++++|+++.++..+.. +++..|+ ..+|++++++ .++++
T Consensus 12 ~~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~-~~~f~srv~~----~~~~~ 86 (158)
T PRK10724 12 IVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI-SKTFTTRNQL----TSNQS 86 (158)
T ss_pred CcCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc-cEEEEEEEEe----cCCCE
Confidence 3356899999999999999999999999999999999999999988876543 4566674 4788887655 46779
Q ss_pred EEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 420 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 420 Isf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
|.|.+++|+|+.+.|.|+|+|.++++|+|+|.++|+++ .+++..+++.++......++++|++||+++|+.
T Consensus 87 I~~~~~~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~--s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 87 ILMQLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFT--NKLIELAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred EEEEecCCChhhccceEEEEECCCCCEEEEEEEEEEEc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998778999999999975 678899999999999999999999999998864
|
|
| >cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=168.10 Aligned_cols=135 Identities=23% Similarity=0.382 Sum_probs=114.6
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEE-eccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~-g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+.++.|+||+++||++|+|+++||+|+|+|.+++++++.++.....+. +..+ ....+.++++ ..++++|.|+++
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~i~~~~~ 76 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGG-IRESFTSRVT----LVPPESIEAELV 76 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeecc-ccEEEEEEEE----ecCCCEEEEEec
Confidence 578899999999999999999999999999999999988776544332 2222 2234555533 345789999999
Q ss_pred ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+|+|+.++|.|+|+|.++|+|+|+|.++++|. +++|.++++.++.+....+|++|+++|++
T Consensus 77 ~g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 77 DGPFKHLEGEWRFKPLGENACKVEFDLEFEFK--SRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred CCChhhceeEEEEEECCCCCEEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999889999999999985 57899999999999999999999999875
|
Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the |
| >cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=163.72 Aligned_cols=136 Identities=15% Similarity=0.235 Sum_probs=110.6
Q ss_pred EEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEE
Q 004764 97 KAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELY 176 (732)
Q Consensus 97 ~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~ 176 (732)
+.++.|+||+++||++|+||++||+|+|.+.++++++. .++...+........+ ....+..++.. .+++|.
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~i~ 72 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLER-DEDELEAELTVGFGGI----RESFTSRVTLV----PPESIE 72 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEc-CCCEEEEEEEEeeccc----cEEEEEEEEec----CCCEEE
Confidence 57899999999999999999999999999999999985 4444333322211111 11222222211 267999
Q ss_pred EEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 177 FSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 177 F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
|++++|+|+.++|.|+++|.+ +++|+|+|+++++|+.++|.++++.++++.+..+|.++++||++
T Consensus 73 ~~~~~g~~~~~~g~w~~~p~~-~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 73 AELVDGPFKHLEGEWRFKPLG-ENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred EEecCCChhhceeEEEEEECC-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999986 47899999999999999999999999999999999999999986
|
Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the |
| >cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=154.09 Aligned_cols=137 Identities=23% Similarity=0.376 Sum_probs=110.8
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCE--EEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK--VRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~--~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
+.+++|+||+++||++|+|+++||+|+|+ ..+++++..++. .+++..+..|.. +.+.... .....+++|.|.+
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~~~i~~~~ 76 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSRR---VLDPEGRRIVFRQ 76 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEEE---EEcCCCCEEEEEE
Confidence 57889999999999999999999999999 888887765544 233455545543 3443332 2223377899999
Q ss_pred Ee--cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 425 VE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 425 ve--Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+. |+|..+.|.|+|++.++++|+|+|.+++++....+++..++.+++.+++..+|++||++||.
T Consensus 77 ~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 77 EEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred eeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 87 88999999999999987789999999999865456788999999999999999999999984
|
This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this |
| >cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=158.42 Aligned_cols=139 Identities=17% Similarity=0.385 Sum_probs=113.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE--E--EEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR--I--LQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r--v--~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
+++.+|+|+||+++||++++|+++||+|+|.|++++++++.+.... + +.. ..|. ...|+++++++ ....+|
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~-~~g~-~~~w~s~~~~~---~~~~~i 76 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPD-ANGT-VWSWVSERTLD---PVNRTV 76 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEec-cCCE-EEEEEEEEEec---CCCcEE
Confidence 3578999999999999999999999999999999999998766543 2 222 2454 36777764443 334678
Q ss_pred EEEEE-ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 421 SFEQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 421 sf~~v-eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.|+.. .|+|..+.|.|+|++.++| |+|+|.++|+...+.++++.++.+.+.+++...|++||++||+.
T Consensus 77 ~~~~~~~~p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 77 RARRVETGPFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred EEEEecCCCcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 88544 4889999999999999776 99999999997644578888999999999999999999999974
|
This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations. |
| >PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=152.36 Aligned_cols=127 Identities=24% Similarity=0.385 Sum_probs=100.7
Q ss_pred EecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEEEEEEc
Q 004764 102 VNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVD 181 (732)
Q Consensus 102 V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~F~~ve 181 (732)
|+||++.||++|+||++||+|+|.+++|++++. +++++++............+.+ ++.+.+ ...|.|.++.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~ 71 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLER-DGDGMRARWEVKFGGIKRSWTS----RVTEDP----PERIRFEQIS 71 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEE-ECCEEEEEEEECTTTTCEEEEE----EEEEEC----TTTEEEESSE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEe-CCCeEEEEEEEecCCEEEEEEE----EEEEEE----eeeeeeeecC
Confidence 789999999999999999999999999999986 4445444322222111222222 223333 2349999999
Q ss_pred cccceeeEEEEEEecCC---CCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHH
Q 004764 182 GDFKKFEGKWSIKSGTR---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALA 237 (732)
Q Consensus 182 GDfk~f~GsW~Lepl~~---g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk 237 (732)
|+|+.++|.|++++.+. +.+|.++|++.++|++++|..+++.++++.++.+|++||
T Consensus 72 g~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 72 GPFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp TTEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999874 567899999999999999999999999999999999986
|
are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A .... |
| >PRK10724 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=158.64 Aligned_cols=140 Identities=18% Similarity=0.330 Sum_probs=119.5
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE-EEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL-EQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv-~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
.++.++.|++|+++||++++|+++||+|+|.+++|+++++. ++..+. .++|...+ ...+++++++. .++
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~-~~~~~a~l~v~~~g~-~~~f~srv~~~--------~~~ 85 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLEST-PGQMTAAVDVSKAGI-SKTFTTRNQLT--------SNQ 85 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEec-CCEEEEEEEEeeCCc-cEEEEEEEEec--------CCC
Confidence 68999999999999999999999999999999999999874 444333 35555543 44455555442 356
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
+|.|.+++|+|+.++|.|+++|.+ +++|+|+|+++++.+-+++..++..+.++....+++|.++||++++.
T Consensus 86 ~I~~~~~~GpF~~l~g~W~f~p~~-~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg 156 (158)
T PRK10724 86 SILMQLVDGPFKKLIGGWKFTPLS-QEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYS 156 (158)
T ss_pred EEEEEecCCChhhccceEEEEECC-CCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999986 46799999999999999999999999999999999999999998765
|
|
| >PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-17 Score=148.54 Aligned_cols=126 Identities=34% Similarity=0.548 Sum_probs=103.5
Q ss_pred EcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecCCcc
Q 004764 352 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDS 431 (732)
Q Consensus 352 I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGdfk~ 431 (732)
|+||+++||++++||++||+|+|+|.+++++++.++++++......+.....|.+++ .+.++..|.++++.|+|+.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~ 76 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGIKRSWTSRV----TEDPPERIRFEQISGPFKS 76 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTTCEEEEEEE----EEECTTTEEEESSETTEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCEEEEEEEEE----EEEEeeeeeeeecCCCchh
Confidence 789999999999999999999999999999999988766544333333336677764 3345555999999999999
Q ss_pred eeEEEEEEEcCC---C-eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 432 FQGKWLFEQLGS---H-HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 432 f~G~W~Lep~gd---G-~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
+.|.|+|++.++ | .|+++|.+.++|. .++|..+++.++++.++.++++||
T Consensus 77 ~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 77 FEGSWRFEPLGGNEGGTRTRVTYDYEVDPP--GPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEETTECCEEEEEEEEEEEEETS--SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEECCCCcCCCEEEEEEEEEEecC--cHhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999885 3 5778888888764 678999999999999999999986
|
are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A .... |
| >COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-17 Score=153.81 Aligned_cols=143 Identities=20% Similarity=0.359 Sum_probs=124.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEE-EEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv-~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
.+++.+..|+++|+++|++++|+++||+|+|+|..++|+++.+..+.. ..++..++- .+|.+++++. +..+.|..
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~-e~F~Trv~~~---~~~~~I~~ 77 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIR-ETFTTRVTLK---PTARSIDM 77 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhee-eeeeeeeeec---Cchhhhhh
Confidence 468889999999999999999999999999999999999998877643 335666643 6788887664 23348999
Q ss_pred EEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 423 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
..++|||+.+.|.|+|.|+++++|.|.+.++|++. ..+.+.++..++.+....++++|.+||...+..
T Consensus 78 ~l~~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~--s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 78 KLIDGPFKYLKGGWQFTPLSEDACKVEFFLDFEFK--SRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred hhhcCChhhhcCceEEEECCCCceEEEEEEEeeeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998889999999999986 568889999999999999999999999988764
|
|
| >cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-16 Score=146.51 Aligned_cols=137 Identities=18% Similarity=0.310 Sum_probs=106.5
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCC-eeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPG-RIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~gg-rirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
++.++.|+||+++||++|+|+++||+|+|. .+++++...+++ .++++..+..... ..+... .+.. +.+++
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~-----~~~~--~~~~~ 71 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSR-----RVLD--PEGRR 71 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEE-----EEEc--CCCCE
Confidence 467899999999999999999999999999 888887753332 3454555533221 111111 1111 34678
Q ss_pred EEEEEEc--cccceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 175 LYFSMVD--GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 175 I~F~~ve--GDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
|.|.++. |+|+.+.|+|+|++.+ +++|+|+|+++++++.+ ++..++.++++++++.+|.+||++||+
T Consensus 72 i~~~~~~~~~~~~~~~g~w~~~~~~-~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 72 IVFRQEEPPPPVASMSGEWRFEPLG-GGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred EEEEEeeCCCChhhheeEEEEEECC-CCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 9999997 7899999999999975 46899999999999874 566789999999999999999999984
|
This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this |
| >cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=139.30 Aligned_cols=137 Identities=17% Similarity=0.270 Sum_probs=106.8
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+++.++.|+||++.||++|+|+++|++|+|.+.++++++..+++.....+.+.. .... ....+.++... .+++
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~----~~~~ 75 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG-AYGI--KDTYALEYTWD----GAGS 75 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEe-eeeE--EEEEEEEEEEc----CCCc
Confidence 589999999999999999999999999999999999986544343222222111 1111 11122222221 2578
Q ss_pred EEEEEEccc-cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 175 LYFSMVDGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 175 I~F~~veGD-fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
|+|+.+.|. +..+.|.|+|++.+ ++|+|+|+++++|+.++|.++++.+.+......+++|+++|
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~--~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 76 VSWTLVEGEGNRSQEGSYTLTPKG--DGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EEEEEecccceeEEEEEEEEEECC--CCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 999999887 88999999999975 48999999999999999999999999999999999999864
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=145.01 Aligned_cols=138 Identities=14% Similarity=0.243 Sum_probs=106.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCC-eeEE--EEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPG-RIWL--EQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~gg-rirv--~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+++++|+|+||++.||++++|.++||+|+|.++++++++..+.+ +.++ +..... +.+.+++++.++ +.
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g--~~~~w~s~~~~~-------~~ 72 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANG--TVWSWVSERTLD-------PV 72 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCC--EEEEEEEEEEec-------CC
Confidence 46899999999999999999999999999999999999853222 2222 432211 122222222222 34
Q ss_pred CceEEEEEE-ccccceeeEEEEEEecCCCCeeEEEEEEEEecC--CCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 172 DRELYFSMV-DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 172 ~rrI~F~~v-eGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~--~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
..+|.|+.. .|.|+.+.|.|++++.+ ++|+|+|..+++.. .+++..++.++++++++.+|.+||++||+.
T Consensus 73 ~~~i~~~~~~~~p~~~m~~~W~f~~~~--~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 73 NRTVRARRVETGPFAYMNIRWEYTEVP--EGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred CcEEEEEEecCCCcceeeeeEEEEECC--CCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 567999533 57799999999999974 45999999988854 488889999999999999999999999974
|
This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations. |
| >cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=138.66 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=105.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCE-EEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK-VRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~-~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
+++.++.|+||+++||++|+|+++||+|+|+|.++++++..++. ........ +.... ....+.++....+.+|.|+
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~i~~~ 79 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGV-GAYGI--KDTYALEYTWDGAGSVSWT 79 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEE-eeeeE--EEEEEEEEEEcCCCcEEEE
Confidence 58899999999999999999999999999999999998654432 21111111 11111 1122233444446789999
Q ss_pred EEecC-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 424 QVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 424 ~veGd-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
...|. +..+.|.|+|++.++ +|+|+|++++++. .++|..+++.+.+.....++++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 80 LVEGEGNRSQEGSYTLTPKGD-GTRVTFDLTVELT--VPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EecccceeEEEEEEEEEECCC-CEEEEEEEEEEec--CCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 99876 778899999999987 5999999999984 578999999999999999999999875
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-14 Score=131.49 Aligned_cols=135 Identities=21% Similarity=0.310 Sum_probs=104.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
++.++.|+||+++||++++|+++||+|+|++.+++++.+.+....+ ....|. ...+..+++ ...+++.|.|...
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~g~-~~~~~~~v~---~~~~~~~i~~~~~ 75 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKA--KGPAGL-SVEWDAEIT---EQVPNERIAWRSV 75 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEE--ecCCCC-cEEEEEEEe---ccCCCCEEEEEEC
Confidence 6788999999999999999999999999999999988542222222 221132 245555432 1245678999988
Q ss_pred ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccC--ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 426 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 426 eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d--~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.|.+ .+.|.|+|++.++++|+|+|++.+++... ..+...+++.++++.+.+.|+.||+.||
T Consensus 76 ~~~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 76 EGAD-PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCCC-CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 8887 88999999998877899999999997531 1234567899999999999999999998
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-12 Score=118.09 Aligned_cols=138 Identities=20% Similarity=0.314 Sum_probs=104.3
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeC-CCeEE
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH-EQEIS 421 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~-~rrIs 421 (732)
|.+++.++.|+||+++||++|+|+++|++|.|.+..+++++..+........ ..|. ..+..+++ .. .+ ++.+.
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~g~--~~~~~~i~--~~-~~~~~~~~ 74 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVR-VAGR--GTVREEIT--EY-DPEPRRIT 74 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEE-ECSC--SEEEEEEE--EE-ETTTTEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEE-eccc--cceeEEEE--Ee-cCCCcEEE
Confidence 4679999999999999999999999999999999999988744343211111 2231 12223221 11 34 78999
Q ss_pred EEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
|+....++..+.+.|+|++.++| |+|+++.++++....++...++...++..+...|+.|++.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 75 WRFVPSGFTNGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEESSSSCEEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecceeEEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99865556677999999999977 999999999862234567788999999999999999999987
|
It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C .... |
| >cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-13 Score=122.98 Aligned_cols=135 Identities=19% Similarity=0.315 Sum_probs=100.5
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC----EEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN----KVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g----~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
+.++.|+||+++||++|+|+++|++|+|.+..++++...+. ..++ .....+. ...+..+++ ...+++.+.|
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~-~~~~~g~-~~~~~~~v~---~~~p~~~~~~ 76 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQ-VRKFLGR-RIELTYEIT---EYEPGRRVVF 76 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEE-EEEecCc-eEEEEEEEE---EecCCcEEEE
Confidence 56889999999999999999999999999999988754322 2222 2222232 133444321 2246789999
Q ss_pred EEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 423 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
....|++. +.+.|+|++.++ +|+|+|++.+++.+...+...++...++..+...|++||+++|+
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 77 RGSSGPFP-YEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EecCCCcc-eEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 98777664 699999999876 59999999988632123456678999999999999999999984
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=129.74 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=117.0
Q ss_pred cCCceEEEEEEecCcc-eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~-rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
+.++|+++.+...++. ..+++++.|++++++||+++.|+++|++|.|.+.++++++..+++....+...... |.+.
T Consensus 24 ~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p---~pvs 100 (195)
T cd08876 24 DKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLP---WPVK 100 (195)
T ss_pred cCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecc---cccC
Confidence 4679999999987774 78999999999999999999999999999999999999987554443333322111 1000
Q ss_pred EE-EEEEEEEeecCCCCceEEEEEEcc-----------ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 AR-VVLDLQELIHSASDRELYFSMVDG-----------DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 ar-vvLdv~E~~~~~~~rrI~F~~veG-----------Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
.| .+....-... ..++.+.+...++ -++.+.|.|.+++.+ +++|+|+|.+.++|++++|.++++.+
T Consensus 101 ~Rdfv~~~~~~~~-~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~-~~~t~vt~~~~~dp~g~iP~~lv~~~ 178 (195)
T cd08876 101 DRDMVLRSTTEQD-ADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG-NGKTRVTYQAYADPGGSIPGWLANAF 178 (195)
T ss_pred CceEEEEEEEEEc-CCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECC-CCeEEEEEEEEeCCCCCCCHHHHHHH
Confidence 11 1111111110 1123444443322 157788999999986 57899999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALACRA 240 (732)
Q Consensus 225 ir~~L~~~L~ALk~ra 240 (732)
.++.++..|.+|+++|
T Consensus 179 ~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 179 AKDAPYNTLENLRKQL 194 (195)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999987
|
Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a |
| >cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=124.54 Aligned_cols=133 Identities=14% Similarity=0.197 Sum_probs=102.9
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|+.++.|+||++.||++++|+++|++|+|.+.+++++.. .+.+..+... .. .....+..+.+.. .++.|
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~-~g------~~~~~~~~v~~~~---~~~~i 70 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD-TRSHWKAKGP-AG------LSVEWDAEITEQV---PNERI 70 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC-CceEEEEecC-CC------CcEEEEEEEeccC---CCCEE
Confidence 688999999999999999999999999999999988742 2223222111 01 1111222233322 35679
Q ss_pred EEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccH----HHHHHHHHhCHHHHHHHHHHHHH
Q 004764 176 YFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA----IFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 176 ~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~----~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.|.+..|.+ .+.|.|++++.+ +++|+|+|++.++|..+++. .+++.++++.+...|+.||+.||
T Consensus 71 ~~~~~~~~~-~~~~~~~f~~~~-~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 71 AWRSVEGAD-PNAGSVRFRPAP-GRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred EEEECCCCC-CcceEEEEEECC-CCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 999998888 899999999975 46899999999999988876 56789999999999999999987
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=123.97 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=100.3
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEe------eCCEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR------ENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer------~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
.+++.++.|+||+++||++++|+++||+|+|++..+..+.. .+.+.++......+.....+ ++ ....++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~v---~~~~p~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM--EI---TESVPN 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE--EE---EecCCC
Confidence 46889999999999999999999999999999987654432 11122222232221111111 11 112467
Q ss_pred CeEEEEEEe-cCCc-ceeEEEEEEEcCCCeEEEEEEEEEEeccCcc--chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 418 QEISFEQVE-GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 418 rrIsf~~ve-Gdfk-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~--Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
++|.|+... +++. .+.+.|+|++.++ +|+|+|+++++..+... +.+.++.+.+++++...|++||+++|+
T Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 77 ERIEYELRFIKPFEATNDVEFTLEPVGG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred cEEEEEEEecCCccccceEEEEEEEcCC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999885 7775 7899999999955 59999999998642211 456778999999999999999999985
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=118.65 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=99.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEee-CCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~-~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
+++.++.|+||++.||++++|+++||+|+|++.+++++.+. +.+.++......+ ..+..++ ....++++|.|.
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i---~~~~p~~~~~~~ 75 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTV---TELRPGHSFTWT 75 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEE---EEecCCCEEEEE
Confidence 47889999999999999999999999999999999998654 2223332222212 1222222 112367889998
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
... ++....+.|+|++.++++|+++|+.++.... .++...++.+.+++.+...|++||+.+|.
T Consensus 76 ~~~-~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 76 GPA-PGISAVHRHEFEAKPDGGVRVTTSESLSGPL-AFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred ecC-CCEEEEEEEEEEEcCCCcEEEEEEEEeecch-HHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 654 3335578999999876789999998876421 23456789999999999999999999874
|
440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance. |
| >cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=118.71 Aligned_cols=134 Identities=19% Similarity=0.313 Sum_probs=103.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCC-CeEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHE-QEIS 421 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~-rrIs 421 (732)
.++.++.|+||+++||++|+|+++|+.|+|.+.++++++..+ +..+.... ..+ ..+..+++ . ..++ ++|.
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~-~~g---~~~~~~i~--~-~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTL-KDG---GTVRERLL--A-LDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEe-CCC---CEEEEEeh--h-cCccCCEEE
Confidence 478899999999999999999999999999999999986542 33322221 122 12222211 1 1344 8999
Q ss_pred EEEEec--CCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 422 FEQVEG--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 422 f~~veG--dfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
|+...| ++..+.|.|+|++.++|+|+|+|++.+++.+ +++..+++..+++.+...|+.|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 75 YRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPE--GLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecCC--CcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999875 4567899999999988789999999999753 377789999999999999999999875
|
The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate |
| >cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=119.89 Aligned_cols=136 Identities=17% Similarity=0.244 Sum_probs=104.7
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+|+.++.|+||++.||++|+|+++|++|+|.+.+++++.... .|..+....... . .....+.+.. +...
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g--~------~~~~~i~~~~--~~~~ 71 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG--G------TVRERLLALD--DAER 71 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC--C------EEEEEehhcC--ccCC
Confidence 588999999999999999999999999999999998875422 132221111111 0 0111122222 1237
Q ss_pred eEEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 174 ELYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 174 rI~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
+|.|++..|+ +..+.|.|+|++.+ +++|+|+|+..+.+..++|..+++..++..+...|.+|++++|
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 72 RYSYRIVEGPLPVKNYVATIRVTPEG-DGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEEEEecCCCCCcccceEEEEEEECC-CCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999863 67899999999975 4589999999999999999999999999999999999999774
|
The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate |
| >cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-12 Score=117.91 Aligned_cols=137 Identities=13% Similarity=0.231 Sum_probs=99.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEE-eccceeEEEEEEEEEEEEEe-eCCCeEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICE-QHEQEISF 422 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~-g~~gll~~~~~~rvvLdv~e-~~~rrIsf 422 (732)
.++.++.|++|+++||++|+|+++|++|+|++.++++++. +...+... +. +.....+..+. .+.+ .++.++.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 76 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKV-GPVKGTFKGKV--ELSDLDPPESYTI 76 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEE-ccEEEEEEEEE--EEEecCCCcEEEE
Confidence 4788999999999999999999999999999999988753 33322111 11 22212233222 2333 34577888
Q ss_pred EEEe-cC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 423 EQVE-GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 423 ~~ve-Gd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d-~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.... ++ +..+.+.|+|++. +++|+|+|++++++.+. ..++..+++.++++.+...++.||++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 77 TGEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EEEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7653 33 5688999999998 56799999999997531 1347888999999999999999998863
|
CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=121.95 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=96.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEe-eCCE--EEE--EEEeccceeEEEEEEEEEEEEEe-eCCC
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-ENNK--VRI--LQEGCKGLLYMVLHARVVMDICE-QHEQ 418 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer-~~g~--~rv--~q~g~~gll~~~~~~rvvLdv~e-~~~r 418 (732)
+++.+..|+||+++||++++|+++||+|+|+|.++++++. .+.+ .++ ...+..+.. ..+..+ +.+ .+++
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~----v~~~~p~~ 76 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYR-LRFELR----VTRIEPLS 76 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcE-EEEEEE----EEeecCCc
Confidence 4677889999999999999999999999999999999873 2211 122 222222211 233333 333 4678
Q ss_pred eEEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEecc-----CccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-----NSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 rIsf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~-----d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
.+.|. ..|++.. .+.|+|++.++ +|+|+|+++++..+ -.++++.++...+++.+..++++||++
T Consensus 77 ~~~~~-~~g~~~~-~~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 77 LLEVR-ASGDLEG-VGRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEEE-EEEeeeE-EEEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 99997 5788765 89999999765 59999999988631 124567778888888888888888876
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-12 Score=114.87 Aligned_cols=136 Identities=16% Similarity=0.271 Sum_probs=99.5
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCC--CeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYP--GRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g--grirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
|+.++.|+||++.||++|+|+++|++|.|.+.+++++..... |..+..+.... .+ .......+.+.. +++
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~---g~--~~~~~~~v~~~~---p~~ 72 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFL---GR--RIELTYEITEYE---PGR 72 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEec---Cc--eEEEEEEEEEec---CCc
Confidence 468899999999999999999999999999999988753211 21211122111 11 111222333332 368
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc--cHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF--PAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi--P~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.+.|....|.+. +.+.|++++.+ ++|+|+|+.+++++++. ...++...+++.+...|++||+++|+
T Consensus 73 ~~~~~~~~~~~~-~~~~~~~~~~~--~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 73 RVVFRGSSGPFP-YEDTYTFEPVG--GGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EEEEEecCCCcc-eEEEEEEEEcC--CceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 899998877664 79999999964 58999999999886543 34578899999999999999999884
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=114.08 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=100.4
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEE-EEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLE-QRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~-Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
.++.++.|+||+++||++|+|+++|++|+|.+.++++++ ++...+. +.+. ..+. .+......+.+.. +++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~---~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~---~~~ 72 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIG---PNEYEATVKLKV-GPVK--GTFKGKVELSDLD---PPE 72 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccC---CCeEEEEEEEEE-ccEE--EEEEEEEEEEecC---CCc
Confidence 478999999999999999999999999999999988864 2332221 1111 1111 1111223333332 346
Q ss_pred eEEEEEEc-c--ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc---cHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 174 ELYFSMVD-G--DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 174 rI~F~~ve-G--Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi---P~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
++.+.... | .+..+.+.|+|++. +++|+|+|++++++..++ |..+++.+.++.+...+++||+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 73 SYTITGEGKGGAGFVKGTARVTLEPD--GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEEec--CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777653 2 37899999999996 468999999999988876 899999999999999999999976
|
CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-11 Score=110.17 Aligned_cols=134 Identities=17% Similarity=0.246 Sum_probs=101.3
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCee-EEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRI-WLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggri-rv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+++.++.|+||+++||++|+|++++++|.|.+.+++++.. ++... +....... . .....+.++. +.++
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~g~----~----~~~~~i~~~~--~~~~ 71 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSG-GGPGTERTVRVAGR----G----TVREEITEYD--PEPR 71 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE-CSTEEEEEEEECSC----S----EEEEEEEEEE--TTTT
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccc-cccceeEEEEeccc----c----ceeEEEEEec--CCCc
Confidence 6899999999999999999999999999999999998762 22221 22222110 1 1223333333 2479
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEec--CCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIP--RLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P--~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.+.|+.+.+.+..+.|.|++++.+ ++|+|+|++++.| ..++...++...++..+...|++||+.+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~--~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 72 RITWRFVPSGFTNGTGRWRFEPVG--DGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEEEEESSSSCEEEEEEEEEEET--TTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecceeEEEEEEEEEEcC--CCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999744567889999999975 5599999999997 34456677899999999999999999987
|
It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C .... |
| >cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=117.43 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=97.1
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCee-EEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRI-WLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggri-rv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
++.-+..|+||++.||++|+|+++||+|+|.+.++++++...+.+. ..++........+. ......+++.. .++
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~v~~~~---p~~ 76 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYR--LRFELRVTRIE---PLS 76 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcE--EEEEEEEEeec---CCc
Confidence 4567889999999999999999999999999999999863111111 11111111111221 12223334432 367
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCC-------CccHHHHHHHHHhCHHHHHHHHHHH
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-------NFPAIFLERIIRSDLPVNLQALACR 239 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~-------piP~~Lv~~~ir~~L~~~L~ALk~r 239 (732)
.+.|+ ..|+|+. .+.|+|++. ++||+|+|+.+++++. ++...++..+.++.++..+++||++
T Consensus 77 ~~~~~-~~g~~~~-~~~~~~~~~--~~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 77 LLEVR-ASGDLEG-VGRWTLAPD--GSGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEEE-EEEeeeE-EEEEEEEEc--CCCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 89997 5788874 799999995 4689999999999865 6777788888888888899998875
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-11 Score=110.73 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=99.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEE-EeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKIL-SRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVL-er~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
|+.++.|+||+++||++++|+++|+.|+|.+..++.. -..+++.........+.. ..+..++ ....++++|.|+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~v---~~~~p~~~~~~~~ 77 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPP-RSFKPRV---TEVEPPRRLAWRG 77 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCc-EEEEEEE---EEEcCCCEeEEEe
Confidence 6788999999999999999999999999999888765 344555444333222111 2233332 1124678999998
Q ss_pred EecCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 425 VEGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 425 veGdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
..++.. ...+.|+|++.++++|+++++..+... ..++...++.+.+.+++...++.|+++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 78 GLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL-LAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred cCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE-EhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 776533 467899999986678999998766532 12345567999999999999999999986
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=115.49 Aligned_cols=136 Identities=12% Similarity=0.234 Sum_probs=98.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEec-----C-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPC-----P-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~-----~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
+++.++.|+||++.||++++|+++|++|+|.+..+..+.. . ..|....+ .+.... ......+.+..
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~------~~~~~~v~~~~- 74 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSW-EGNDKV------GEGEMEITESV- 74 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEE-ecCCcc------cceEEEEEecC-
Confidence 6899999999999999999999999999998766544321 1 11111111 111000 01122333332
Q ss_pred CCCCceEEEEEEc-cccc-eeeEEEEEEecCCCCeeEEEEEEEEecCCCcc----HHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 169 SASDRELYFSMVD-GDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP----AIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 169 ~~~~rrI~F~~ve-GDfk-~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP----~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.+++|.|+... |+++ .+.+.|.+++. ++||+|+|.+++++.++.+ ..++..++++++...|.+||+++|+
T Consensus 75 --p~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 75 --PNERIEYELRFIKPFEATNDVEFTLEPV--GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred --CCcEEEEEEEecCCccccceEEEEEEEc--CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 36889999985 6675 88999999997 4689999999998876644 4567899999999999999999884
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=110.75 Aligned_cols=134 Identities=17% Similarity=0.234 Sum_probs=97.9
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecC-CCC-eeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCP-YPG-RIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~-~gg-rirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
+++.++.|+||++.||++++|+++|++|+|.+.+++++... +.| +.++. .+.. . .....+.++. ++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~-~~~~----~----~~~~~i~~~~---p~ 69 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMK-PPGL----V----RSTFTVTELR---PG 69 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEe-cCCC----C----ceEEEEEEec---CC
Confidence 57899999999999999999999999999999999887643 222 22222 1111 1 1122334443 35
Q ss_pred ceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCC-CccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 173 RELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 173 rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~-piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++.|+... ++....+.|+|++.+ +++|+|+|+..+...+ ++...++...+++.+...|++||+.+|.
T Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 70 HSFTWTGPA-PGISAVHRHEFEAKP-DGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred CEEEEEecC-CCEEEEEEEEEEEcC-CCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 789998654 345567899999964 4789999999886533 2345788999999999999999998873
|
440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance. |
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=115.27 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=102.8
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEeccce-e-EEEEEEEEEEEEEeeCCCe
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGL-L-YMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gl-l-~~~~~~rvvLdv~e~~~rr 419 (732)
.+.+.+++.|++|+++||+++.|++.||+|.|+|.+++++++.++.. .......... + ...+......... ..+..
T Consensus 40 ~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~-~~~~~ 118 (195)
T cd08876 40 LKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQD-ADDGS 118 (195)
T ss_pred eEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEc-CCCCE
Confidence 47789999999999999999999999999999999999999876532 2222211111 0 0112221111110 11334
Q ss_pred EEEEEEec----C-------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 420 ISFEQVEG----D-------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 420 Isf~~veG----d-------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
+.+...++ | +..+.|.|.|++.++++|+|+|.+.++|. +++|..+++.+++..+..++++|+++|.
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~--g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPG--GSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333322 2 45778999999998889999999999985 6899999999999999999999999873
|
Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a |
| >cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=109.80 Aligned_cols=106 Identities=23% Similarity=0.326 Sum_probs=82.1
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCE----EEEE-EEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK----VRIL-QEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~----~rv~-q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+.++.|+||+++||++++|.++||.|+|.+.+++++...++. .++. .....++. +.|.++++ ...+++.+.
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~-~~w~~~it---~~~p~~~f~ 77 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIP-QRWTTEIT---EVEPPRRFV 77 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCc-eEEEEEEE---EEcCCCeEE
Confidence 578899999999999999999999999999999998654332 1221 12222322 46666642 224568899
Q ss_pred EEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEec
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ 457 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~ 457 (732)
++++.|+|..++++|+|++.++ +|+|++++++++.
T Consensus 78 ~~~~~G~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 78 DEQVSGPFRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEeccCCchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 9999999998999999999876 5999999999973
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=112.97 Aligned_cols=141 Identities=16% Similarity=0.324 Sum_probs=116.6
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE-EEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL-EQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv-~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
++..+..|+.+|+++|+++.|+++||+|+|.+..++|++. ++....- ..+|... +.-.|+.+++++ +..+
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~~k~-i~e~F~Trv~~~-------~~~~ 73 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLER-NERELIAELDVGFKG-IRETFTTRVTLK-------PTAR 73 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEecc-CcceeEEEEEEEhhh-eeeeeeeeeeec-------Cchh
Confidence 5788999999999999999999999999999999999986 4443211 1244332 233455555554 2345
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
.|....++|+|+...|.|+++|++ +++|.|.+.++.+.+-.+-..++....+.....+.+|..+||...+.
T Consensus 74 ~I~~~l~~GPFk~L~~~W~F~pl~-~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~ 144 (146)
T COG2867 74 SIDMKLIDGPFKYLKGGWQFTPLS-EDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYG 144 (146)
T ss_pred hhhhhhhcCChhhhcCceEEEECC-CCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999985 68999999999999999999999999999999999999999998653
|
|
| >cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=105.00 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=96.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+..++.|+||+++||++|+|+++||+|+|.+..+.+....++..........+.. ..+..++ ....++++|.|+..
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~-~~~~~~i---~~~~~~~~i~~~~~ 77 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEE-GWVSGEV---LEVEPPRRLVFTWA 77 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCE-EeccEEE---EEEcCCCeEEEEec
Confidence 5678999999999999999999999999985445544445554443333222211 1222222 11246689999988
Q ss_pred ecC---CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGD---FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGd---fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.++ +....+.|+|++.++ +|+|+++..+.+.. .+...+...+.+....+|..||+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 78 FSDETPGPETTVTVTLEETGG-GTRLTLTHSGFPEE---DAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred ccCCCCCCceEEEEEEEECCC-CEEEEEEEEccChH---hHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 763 457789999999984 59999998876531 224567778888999999999999984
|
This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer |
| >COG5637 Predicted integral membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=113.60 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=109.1
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.+|+|++|+++||+++.|+|++|.||.|+.+|+|+++...+ |....-+...++|.++++-| .+..+|.|+
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkrSr---W~~~ap~g~~v~Wea~it~d---~~~e~I~W~ 143 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKRSR---WKANAPLGLEVEWEAEITKD---IPGERIQWE 143 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCccc---eeEcCCCCceEEEeehhhcc---CCCcEEeee
Confidence 458889999999999999999999999999999999999765532 22222234557899986544 366899999
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHH----HhhHHHHHHHHHHHHHhh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI----YEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~l----r~~l~~~L~ALK~rAE~~ 489 (732)
.++|.--..+|.-+|++..+..|.|+..+.+.|.+ ++...++.+++ ...+.+.|+.||+++|..
T Consensus 144 Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~Pg--g~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~ 211 (217)
T COG5637 144 SLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPPG--GLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG 211 (217)
T ss_pred cCCCCcCCCCccEEeeeCCCCceEEEEEEEecCCc--cHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence 99986557799999999888889999999999853 34445555554 667788888999998874
|
|
| >cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.4e-10 Score=98.45 Aligned_cols=135 Identities=23% Similarity=0.308 Sum_probs=94.4
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEE-ec-cceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GC-KGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~-g~-~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
+.++.|+||+++||++++|+++|+.|+|++..++++............ .. .+. ...+..+++. ..++..+.|..
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~---~~~~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTE---VDPPRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEE---ecCCCceEEEE
Confidence 467899999999999999999999999999999988764433221111 10 011 1223333221 12456888988
Q ss_pred EecCCc-ceeEEEEEEEcCCCeEEEEEEEEEEeccCc-cchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 425 VEGDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNS-LLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 425 veGdfk-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~-~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
..+++. .+.+.|.|++.++++|+|++.+.+.+.... .++..++.+.++..+...+..++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 78 TGGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred ecCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 877655 789999999988757999999999875311 1356678888887777777777654
|
SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-10 Score=106.41 Aligned_cols=134 Identities=12% Similarity=0.149 Sum_probs=88.5
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-e-CCCeEEEEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-Q-HEQEISFEQ 424 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~-~~rrIsf~~ 424 (732)
+.++.|+|||+.||++|+|+++|+.|+|.+..++++. ++.........-+.....+..++ ++.+ . +++++.+..
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGPISASFKGTA--RLLEDDEAARRAVLEA 77 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEccEEEEEEEEE--EEEeccCCCcEEEEEE
Confidence 4678999999999999999999999999998888753 23332211111111223343333 3443 2 567887764
Q ss_pred EecCCc-----ceeEEEEEEEcCCCeEEEEEEEEEEeccCccc---hHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 425 VEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLL---SEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 425 veGdfk-----~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~L---p~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
...+.. .....|++.+. +++|+|+|.+++++. +++ ...++++..++.+...++.|++++|
T Consensus 78 ~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~--g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 78 TGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALT--GKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEe--eEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 321111 34668999984 467999999988864 334 3445777777777888888888876
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=106.89 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=96.3
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE-EEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL-EQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv-~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
|+.++.|+|||+.||+.|+|+++|+.|+|+++..+++ +++.... .+.. +..+..+......+.+.. ..+++
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~---~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~--~~~~~ 72 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVE---GDDEYKGTVKVK---LGPISASFKGTARLLEDD--EAARR 72 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceecccc---CCCeEEEEEEEE---EccEEEEEEEEEEEEecc--CCCcE
Confidence 4678999999999999999999999999999988764 2333211 1221 112222222233444432 14677
Q ss_pred EEEEEEc--cc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH---HHHHHHhCHHHHHHHHHHHHH
Q 004764 175 LYFSMVD--GD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 175 I~F~~ve--GD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L---v~~~ir~~L~~~L~ALk~raE 241 (732)
+.+.... +. .-.....|+|.+. +++|+|+|+++++...+++... +++..++.+...+++|++++|
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 73 AVLEATGKDARGQGTAEATVTLRLSPA--GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEEEEEEecCCCcceEEEEEEEEEEec--CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 8776543 11 1256678999983 5789999999999999987765 888889999999999999887
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=100.18 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=97.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|+.++.|+||+++||++|+|.++++.|+|.+.+++......|++......+... ........+.+.. ++++|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~-----~~~~~~~~v~~~~---p~~~~ 73 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGG-----PPRSFKPRVTEVE---PPRRL 73 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCC-----CcEEEEEEEEEEc---CCCEe
Confidence 788999999999999999999999999999887766422234454332221110 0112223334443 36899
Q ss_pred EEEEEcccc--ceeeEEEEEEecCCCCeeEEEEEEEEec-CCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 176 YFSMVDGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIP-RLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 176 ~F~~veGDf--k~f~GsW~Lepl~~g~gT~LtY~l~V~P-~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.|+...|+. -...+.|+|++.+ +++|++++...+.. ..++...++...+++.+...|.+||+.||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 74 AWRGGLPFPGLLDGEHSFELEPLG-DGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEecCCCCcEeeEEEEEEEEEcC-CCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 999887753 3577899999974 47899999877643 22344567899999999999999999886
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=108.70 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=112.5
Q ss_pred CCceEEEEEEecCcceeEEEEEEEecCHHHHH-HHHhCccccccccccceEEEEEecCCCCeeEEEEEee--------ee
Q 004764 79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGL--------QR 149 (732)
Q Consensus 79 e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw-~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~--------~~ 149 (732)
..+++|+...+++....+++++.|++|++.+| ++|.|.+.+++|.+++.++++|+.-+++...++++.. .|
T Consensus 34 ~~gi~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~R 113 (209)
T cd08906 34 DNGDTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPR 113 (209)
T ss_pred CCCCEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCC
Confidence 47999999999877678999999999999998 6999999999999999999999876655433343321 11
Q ss_pred -eEEEEEEEE-----EEEEEEEeec--CCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH
Q 004764 150 -ALYWHIEAR-----VVLDLQELIH--SASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 150 -il~~~~~ar-----vvLdv~E~~~--~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv 221 (732)
++......+ +.......++ ++..+.|+-. ..+.|.|.+.+..+.+.|.++|.+.++|++++|.+++
T Consensus 114 DfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~------~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lv 187 (209)
T cd08906 114 DFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGE------NGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLI 187 (209)
T ss_pred ceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEe------eeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHH
Confidence 110000000 0000000000 1223333332 2456888887622246899999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHh
Q 004764 222 ERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 222 ~~~ir~~L~~~L~ALk~raEr 242 (732)
+.++.+.....|.+||++++.
T Consensus 188 N~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 188 HQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998864
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers. |
| >cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-09 Score=108.84 Aligned_cols=157 Identities=11% Similarity=0.093 Sum_probs=114.6
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHH-HHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw-~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
++.++.|+.+.+++..+-++++..|++|++.|+ .++.|++.+++|.+++.++++|+.-+++...+++....... |.+.
T Consensus 33 ~~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~-~~vs 111 (209)
T cd08905 33 AENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAG-NVVG 111 (209)
T ss_pred cCCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCC-CccC
Confidence 467899999999876678999999999999999 88889999999999999999998766555434433111000 0011
Q ss_pred EE-EEE--------------EEEEeec--CCCCceEEEEEEccccceeeEEEEEEecCC-CCeeEEEEEEEEecCCCccH
Q 004764 157 AR-VVL--------------DLQELIH--SASDRELYFSMVDGDFKKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPA 218 (732)
Q Consensus 157 ar-vvL--------------dv~E~~~--~~~~rrI~F~~veGDfk~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~piP~ 218 (732)
-| .+. .....++ ++..+.|+. ....|.|.|+|++. .+.|.++|.+.++|++++|.
T Consensus 112 ~RD~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~-------~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~ 184 (209)
T cd08905 112 PRDFVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRA-------ENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPK 184 (209)
T ss_pred ccceEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEE-------EeeccEEEEEECCCCCCceEEEEEEeecCCCCCCH
Confidence 11 000 0000000 122333333 44669999999852 26899999999999999999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 219 IFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 219 ~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++.++.+.....|.+||++++.
T Consensus 185 ~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 185 SIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred HHHHHHhHHhHHHHHHHHHHHHhc
Confidence 999999999999999999998863
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in |
| >cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=103.10 Aligned_cols=135 Identities=17% Similarity=0.181 Sum_probs=89.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEE-----eeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-----RENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLe-----r~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
+++.++.|+||++.||++|+|+++||+|+|......+.. ..++..++..... +.. +.+..+++ ...++++
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~~-~~~~~~v~---~~~p~~~ 75 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GGP-YRITNHVV---AFEENRL 75 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcC-CCc-eEEEEEEE---EECCCCE
Confidence 377899999999999999999999999998643222221 2233344433322 322 34444422 2246789
Q ss_pred EEEEEEe--cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 004764 420 ISFEQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 420 Isf~~ve--Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~l--v~r~lr~~l~~~L~ALK~rAE 487 (732)
|+|+... .........|+|++.++|+|+|+++..+...+ ....+ +...+.++....|..|++.+|
T Consensus 76 l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~---~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 76 IAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAVT---DLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCCh---hhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 9998652 22335677889999887889999998876421 12222 335567888999999998875
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-09 Score=94.76 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=95.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
++.++.|+||++.||++|+|+++|++|+|.+..++++.. .+............ ..........+.+.. .+..+
T Consensus 1 ~~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~---~~~~~ 73 (141)
T cd07812 1 VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGG-GEGGVGARFVGGRK---GGRRLTLTSEVTEVD---PPRPG 73 (141)
T ss_pred CcEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCC-CCccceeEEEEEec---CCccccceEEEEEec---CCCce
Confidence 357899999999999999999999999999999988753 22221111010000 000111222333332 25689
Q ss_pred EEEEEccccc-eeeEEEEEEecCCCCeeEEEEEEEEecCCCc---cHHHHHHHHHhCHHHHHHHHHHH
Q 004764 176 YFSMVDGDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACR 239 (732)
Q Consensus 176 ~F~~veGDfk-~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi---P~~Lv~~~ir~~L~~~L~ALk~r 239 (732)
+|....+++. .+.+.|.+++.+ +++|+|+|++.+.+..+. +..++.+.++..+...+.+++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 74 RFRVTGGGGGVDGTGEWRLEPEG-DGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred EEEEecCCCCcceeEEEEEEECC-CCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 9998887764 899999999975 348999999999999987 56777888887777777777663
|
SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=102.30 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=83.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCe-----eEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR-----IWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggr-----irv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
++.++.|+||++.||+.++|.+++++|+|.+.+++++.. .++. ...++... +.+ ....+.+++++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~-~~~~~~~G~~~~~~~~~---~~~--~~~w~~~it~~~--- 71 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGR-TPGLIYGGARVTYRLRH---FGI--PQRWTTEITEVE--- 71 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEec-CCCcccCCcEEEEEEEe---cCC--ceEEEEEEEEEc---
Confidence 357899999999999999999999999999999999853 3222 11222211 111 122334444443
Q ss_pred CCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH
Q 004764 171 SDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 171 ~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv 221 (732)
+++++.++++.|.|+.+++.|.+++.+ +||+|++++++++.+.+-..++
T Consensus 72 p~~~f~~~~~~G~~~~w~h~~~f~~~~--~gT~vt~~v~~~~p~g~lg~~~ 120 (137)
T cd07820 72 PPRRFVDEQVSGPFRSWRHTHRFEAIG--GGTLMTDRVEYRLPLGPLGRLA 120 (137)
T ss_pred CCCeEEEEeccCCchhCEEEEEEEECC--CceEEEEEEEEeCCchhHHHHH
Confidence 367899999999999999999999964 5899999999998654444443
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-09 Score=106.01 Aligned_cols=164 Identities=11% Similarity=0.022 Sum_probs=114.6
Q ss_pred cCC-ceEEEEEEecCcceeEEEEEEEecCHHHHHH-HHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQR-KVHCEVEVVSWRERRIKAEMLVNADVDSVWN-ALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~-~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~-VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
++. ++.|+.+.+++..+-++++..|++|++.|+. ++.|.+..++|.+++.++++++.-+++...++.+.... ..|..
T Consensus 31 ~~~~~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~-~~~~v 109 (208)
T cd08868 31 NTTWGDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEA-GGGLV 109 (208)
T ss_pred ecCCCCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCc-CCCcc
Confidence 456 9999999999866679999999999999985 67899999999999999999988665543344332111 00111
Q ss_pred EEEEEEEEEEeecCCCCceEEEEEEc--------cc--cceeeEEEEEEecCC-CCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EARVVLDLQELIHSASDRELYFSMVD--------GD--FKKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~arvvLdv~E~~~~~~~rrI~F~~ve--------GD--fk~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..|=.+.++........-.|....++ |- ...+.|.|.++|.+. .++|.++|.+.++|++++|.++++.+
T Consensus 110 s~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~ 189 (208)
T cd08868 110 SPRDFVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQA 189 (208)
T ss_pred cccceEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehh
Confidence 11111111111100001112222221 10 144669999999863 26799999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHh
Q 004764 225 IRSDLPVNLQALACRAER 242 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr 242 (732)
+...+...+.+||+.++.
T Consensus 190 ~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 190 LASVLLDFMKHLRKRIAT 207 (208)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999999999998875
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth |
| >cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.3e-09 Score=95.54 Aligned_cols=135 Identities=21% Similarity=0.174 Sum_probs=96.6
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
|..++.|+||++.||++|+|+++|+.|+|++..+.+ ....||..+....+... . .......+++.. ++++|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~-~~~~Gg~~~~~~~~~~g---~--~~~~~~~i~~~~---~~~~i 72 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEM-DLRVGGRWFFFMTGPDG---E--EGWVSGEVLEVE---PPRRL 72 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEE-cccCCceEEEEEECCCC---C--EEeccEEEEEEc---CCCeE
Confidence 678999999999999999999999999997333333 22344544333222110 0 112223334443 35889
Q ss_pred EEEEEccc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 176 YFSMVDGD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 176 ~F~~veGD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.|+...++ +....+.|+|++.+ ++|+|+|.....+... |.......+++....+|..||+.+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 73 VFTWAFSDETPGPETTVTVTLEETG--GGTRLTLTHSGFPEED-AEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred EEEecccCCCCCCceEEEEEEEECC--CCEEEEEEEEccChHh-HHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 99999874 57789999999975 6799999999877632 25567788888999999999999884
|
This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer |
| >cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-08 Score=99.60 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=112.3
Q ss_pred cCCceEEEEEEecC-cceeEEEEEEE-ecCHHHHHHHHhCccccccccccceEEEEEecCCC-CeeEEEEEeeeeeEEEE
Q 004764 78 EQRKVHCEVEVVSW-RERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLACSGRIPCPYP-GRIWLEQRGLQRALYWH 154 (732)
Q Consensus 78 ~e~~v~v~v~~v~~-~~rrV~asi~V-~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g-grirv~Qvg~~~il~~~ 154 (732)
++.+|+|+.+.+.+ +...+++...+ ++|++.++++|.|.+..++|.+.+.+.++|+..++ +.-.++..-... |.
T Consensus 28 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P---~P 104 (207)
T cd08911 28 EKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWP---KP 104 (207)
T ss_pred EcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECC---CC
Confidence 67789999999985 45678897766 99999999999999999999999999999986332 322233322111 10
Q ss_pred EEE-EEEEEEEEeecCCCCce--EEEEEEc--------cc--cceeeEEEEEEecC--CCCeeEEEEEEEEecCCCccHH
Q 004764 155 IEA-RVVLDLQELIHSASDRE--LYFSMVD--------GD--FKKFEGKWSIKSGT--RSSTTTLSYEVNVIPRLNFPAI 219 (732)
Q Consensus 155 ~~a-rvvLdv~E~~~~~~~rr--I~F~~ve--------GD--fk~f~GsW~Lepl~--~g~gT~LtY~l~V~P~~piP~~ 219 (732)
+.- ..++...-... +.... |....+. |- ...+.|.|.++|.+ ..++|.++|....+|++++|.+
T Consensus 105 ~s~RD~V~~r~~~~~-~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~ 183 (207)
T cd08911 105 FANRDYVYVRRYIID-EENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSY 183 (207)
T ss_pred CCCccEEEEEEEEEc-CCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHH
Confidence 000 01111111111 11111 2222222 11 36688999999974 2468999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Q 004764 220 FLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 220 Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++.+..+.++..|..|++.+.+
T Consensus 184 lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 184 ITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHhc
Confidence 99999999999999999997754
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol. |
| >cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-08 Score=101.07 Aligned_cols=161 Identities=13% Similarity=0.090 Sum_probs=115.4
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
+..+++++.+..+++ ...++++..|++|++.++++|.|.+.+++|+|.+.++++++..+.+...++..-. +-|.+.
T Consensus 29 ~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~---~PwPv~ 105 (215)
T cd08877 29 ESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVD---LPWPLS 105 (215)
T ss_pred cCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEe---CceEec
Confidence 457999999999998 6789999999999999999999999999999999999998765444332332211 111111
Q ss_pred EE-EEEEEEEeecCCCCceEEEEE--E-----------------c-cc--cceeeEEEEEEecCCCCeeEEEEEEEEecC
Q 004764 157 AR-VVLDLQELIHSASDRELYFSM--V-----------------D-GD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPR 213 (732)
Q Consensus 157 ar-vvLdv~E~~~~~~~rrI~F~~--v-----------------e-GD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~ 213 (732)
.| .++...-.......+.|...+ + . |- ...+.|.|.|+|.+ .+.|.++|.+.++|+
T Consensus 106 ~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~-~~~t~v~~~~~~DP~ 184 (215)
T cd08877 106 NREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS-PTKCYLRFVANVDPK 184 (215)
T ss_pred ceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC-CCCeEEEEEEEcCCC
Confidence 11 111111000000122221111 1 1 11 25678999999986 578999999999999
Q ss_pred CC-ccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 214 LN-FPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 214 ~p-iP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+. +|.++++.+.++....+|.+|++.|+.
T Consensus 185 g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 185 MSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99 999999999999999999999998864
|
Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a |
| >cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-08 Score=98.96 Aligned_cols=145 Identities=13% Similarity=0.097 Sum_probs=103.9
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee--------e
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ--------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~--------~ 149 (732)
++.+|+|+.+.+++....+.++..|+||+++||++|.|.+++++|.+.+.++++++.-+++.-.++++... |
T Consensus 29 ~~~gI~Vy~k~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~R 108 (205)
T cd08874 29 LEKDVVIYYKVFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPR 108 (205)
T ss_pred cCCCEEEEEecCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCC
Confidence 67899999999888778899999999999999999999999999999999999998755554334443321 1
Q ss_pred -eEEEEEEEE----EEEEEEEeec---CCCC-ceEEEEEEccccceeeEEEEEEec---CCCCeeEEEEEEEEecC-CCc
Q 004764 150 -ALYWHIEAR----VVLDLQELIH---SASD-RELYFSMVDGDFKKFEGKWSIKSG---TRSSTTTLSYEVNVIPR-LNF 216 (732)
Q Consensus 150 -il~~~~~ar----vvLdv~E~~~---~~~~-rrI~F~~veGDfk~f~GsW~Lepl---~~g~gT~LtY~l~V~P~-~pi 216 (732)
++....... .++.++-.+. ++.+ +-|+. ..+.|.|.++|+ + .+.|+|+|.+.++|+ .-+
T Consensus 109 DfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~-------~~~~~gw~i~P~~~~g-~~~t~vty~~q~DPggg~i 180 (205)
T cd08874 109 DFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRG-------EILPSAWILEPVTVEG-NQYTRVIYIAQVALCGPDV 180 (205)
T ss_pred eEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEe-------eeEeeeEEEEECccCC-CCcEEEEEEEEECCCCCCC
Confidence 110000000 0111111111 1122 44555 446699999997 4 357999999999999 799
Q ss_pred cHHHHHHHHHhCHH
Q 004764 217 PAIFLERIIRSDLP 230 (732)
Q Consensus 217 P~~Lv~~~ir~~L~ 230 (732)
|++|++.++++...
T Consensus 181 P~~l~N~~~~~~p~ 194 (205)
T cd08874 181 PAQLLSSLSKRQPL 194 (205)
T ss_pred CHHHHhHHHHhccH
Confidence 99999999877644
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy. |
| >cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-07 Score=95.33 Aligned_cols=162 Identities=9% Similarity=0.007 Sum_probs=110.3
Q ss_pred cCCc----eEEEEEEecCc-ceeEEEEEEE-ecCHHHHHHHHhCccccccccccceEEEEEecCCC-CeeEEEEEeeeee
Q 004764 78 EQRK----VHCEVEVVSWR-ERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLACSGRIPCPYP-GRIWLEQRGLQRA 150 (732)
Q Consensus 78 ~e~~----v~v~v~~v~~~-~rrV~asi~V-~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g-grirv~Qvg~~~i 150 (732)
+..+ ++|+.+.+.+. ...+++...+ ++|++.++++|.|.+..++|.+.+.+.++|+..++ +.-.++.+....
T Consensus 29 ~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P- 107 (209)
T cd08870 29 DKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFP- 107 (209)
T ss_pred hccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECC-
Confidence 4566 99999998854 5679999999 56999999999999999999999999999987433 221122222111
Q ss_pred EEEEEEEE-EEEEEEEeecCCCCceEEEEEEc-------cc--cceeeEEEEEEecC-CCCeeEEEEEEEEecCCCccHH
Q 004764 151 LYWHIEAR-VVLDLQELIHSASDRELYFSMVD-------GD--FKKFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAI 219 (732)
Q Consensus 151 l~~~~~ar-vvLdv~E~~~~~~~rrI~F~~ve-------GD--fk~f~GsW~Lepl~-~g~gT~LtY~l~V~P~~piP~~ 219 (732)
|.+.-| .|+..+.+........|..+.+. |- ++.+.|.|.++|.. .+++|.++|.+..+|++.||.+
T Consensus 108 --~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~w 185 (209)
T cd08870 108 --FPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRE 185 (209)
T ss_pred --CcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHH
Confidence 000000 11111100000000011111111 11 36788999999982 2578999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Q 004764 220 FLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 220 Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++.+.++.++..|+.|++.+.+
T Consensus 186 lvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 186 LAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhc
Confidence 99999999999999999997743
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo |
| >cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=96.57 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=111.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEE-ecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V-~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
.+++|+|+.+...++ ...+++...+ +++++.++++|.|.+..++|.+++.++++|+..+++.-.++.+-... |..
T Consensus 30 ~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P---~pv 106 (222)
T cd08871 30 NKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCP---KPL 106 (222)
T ss_pred cCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECC---CCC
Confidence 567899999998876 4568888887 68999999999999999999999999999987554432222221110 000
Q ss_pred EEE-EEEEEEEeecCCCCceEEEEEEc--------ccc--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EAR-VVLDLQELIHSASDRELYFSMVD--------GDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~ar-vvLdv~E~~~~~~~rrI~F~~ve--------GDf--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..| .++. +..........|....+. |-+ ..+.|.|.+++.+ +++|.++|.+.++|++++|.++++.+
T Consensus 107 s~RDfV~~-r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-~~~t~vt~~~~~Dp~G~IP~~lvN~~ 184 (222)
T cd08871 107 KNRDFVNL-RSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG-PKGCTLTYVTQNDPKGSLPKWVVNKA 184 (222)
T ss_pred CCCeEEEE-EEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECC-CCCEEEEEEEecCCCCCcCHHHHHHH
Confidence 000 0100 000000000011111111 111 3456889999986 57899999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHhhc
Q 004764 225 IRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr~~ 244 (732)
+.+..+..|.+|++.+++..
T Consensus 185 ~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 185 TTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999753
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe |
| >cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-08 Score=89.82 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=83.9
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEe----cCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIP----CPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe----~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
+|+.++.|+||++.||++|+|+++|++|.|......+.. ..-|++.++...+... .+.+. ..+.+..
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~--~~~~~----~~v~~~~--- 71 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGG--PYRIT----NHVVAFE--- 71 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCC--ceEEE----EEEEEEC---
Confidence 478999999999999999999999999998643222221 1123333322221111 11122 2233433
Q ss_pred CCceEEEEEEc-c-ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH--HHHHHhCHHHHHHHHHHHHH
Q 004764 171 SDRELYFSMVD-G-DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL--ERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 171 ~~rrI~F~~ve-G-Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv--~~~ir~~L~~~L~ALk~raE 241 (732)
++++|.|+..- + ........|+|++.+ +++|+|+++..+... .....+. ...........|..|++.+|
T Consensus 72 p~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~g~T~vt~~~~~~g~-~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 72 ENRLIAWRPGPAGQEPGGHRWRWELEPIG-PGRTRVTETYDWSAV-TDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred CCCEEEEEccCCCCCCCceeEEEEEEECC-CCcEEEEEEEeccCC-hhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 46889998652 2 234566789999975 468999999876533 2222222 23356677788888888664
|
Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins. |
| >cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.8e-07 Score=85.62 Aligned_cols=111 Identities=17% Similarity=0.421 Sum_probs=82.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCc-c-cccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYET-L-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~-y-Pef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
.++.++.|+||+++||+++.|+.+ . +.|.|.++++++++.++ |.+|.+.....+ ....+..+ ++...+..++|
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~~~~~kE~--l~~~D~~~~~~ 78 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-KVKYVKER--IDAVDEENKTY 78 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-cceEEEEE--EEEEcccccEE
Confidence 367899999999999999999994 5 56888999999987652 345554433222 11223344 23333446899
Q ss_pred EEEEEecCC-----cceeEEEEEEEcCCCeEEEEEEEEEEecc
Q 004764 421 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQK 458 (732)
Q Consensus 421 sf~~veGdf-----k~f~G~W~Lep~gdG~TrVty~v~~ep~~ 458 (732)
.|+.++|++ +.|.+..+|.+.++++|.+.|.+.|++..
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~ 121 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKG 121 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECC
Confidence 999999854 47789999999988889999999999864
|
This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth |
| >cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-07 Score=93.58 Aligned_cols=163 Identities=16% Similarity=0.153 Sum_probs=119.0
Q ss_pred cCCceEEEEEEecCcc-e--eEEEEEEEe-cCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee-----
Q 004764 78 EQRKVHCEVEVVSWRE-R--RIKAEMLVN-ADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ----- 148 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~-r--rV~asi~V~-AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~----- 148 (732)
++.+|+|+.+.+.+.. . .+++...|+ ++++.++++|.|.+...+|..++.++++|+.-+++...+++....
T Consensus 33 ~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs 112 (235)
T cd08872 33 EEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAA 112 (235)
T ss_pred eCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCC
Confidence 5789999999988863 2 599999999 999999999999999999999999999998866665444553321
Q ss_pred -e-eEEEEEEEE--------------EEEEEEEeec--CCCCceEEEEEEc----cc-cceeeEEEEEEecCCCCeeEEE
Q 004764 149 -R-ALYWHIEAR--------------VVLDLQELIH--SASDRELYFSMVD----GD-FKKFEGKWSIKSGTRSSTTTLS 205 (732)
Q Consensus 149 -~-il~~~~~ar--------------vvLdv~E~~~--~~~~rrI~F~~ve----GD-fk~f~GsW~Lepl~~g~gT~Lt 205 (732)
| ++++. ..+ +++......+ ++..+.|+..+.. +- ...-.|.|.+.+ + +++|.++
T Consensus 113 ~RD~V~~~-~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~-~~~~~it 189 (235)
T cd08872 113 QRDALFVS-HIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-D-NILCKIT 189 (235)
T ss_pred CcEEEEEE-EEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-C-CCeEEEE
Confidence 1 11111 111 1111111111 1334556655422 21 233347799988 2 5789999
Q ss_pred EEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 206 YEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 206 Y~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
|...++|++++|+++++.+.++..|..|+.|-..+...
T Consensus 190 y~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 190 YVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred EEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998865
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg |
| >cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-07 Score=93.43 Aligned_cols=155 Identities=11% Similarity=0.048 Sum_probs=107.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEe-cCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee------e
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~-AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~------~ 149 (732)
++.+|+|+.+.+.+. ...+++...+. ++++.++++|.|.+..++|.+.+.+ +++..+++.-.+++.-.. |
T Consensus 32 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~~k~PwPvs~R 109 (207)
T cd08910 32 ESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWEVKYPFPLSNR 109 (207)
T ss_pred ecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEEEEcCCCCCCc
Confidence 567999999987766 56799999998 6999999999999999999999987 344333343223322211 1
Q ss_pred -eEEEEEEE------E---EE-EEEEEeec-CCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCcc
Q 004764 150 -ALYWHIEA------R---VV-LDLQELIH-SASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP 217 (732)
Q Consensus 150 -il~~~~~a------r---vv-Ldv~E~~~-~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP 217 (732)
+++..... . ++ ....+.+. +...+.|+. ..+.|.|.+++.+ .++|.++|....+|++.||
T Consensus 110 D~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv-------~~~~~~~~i~p~~-~~~t~i~~~~~~DPgG~IP 181 (207)
T cd08910 110 DYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRV-------KQYKQSLAIESDG-KKGSKVFMYYFDNPGGMIP 181 (207)
T ss_pred eEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEE-------EEEEEEEEEEeCC-CCceEEEEEEEeCCCCcch
Confidence 11110000 0 00 00001110 011222333 5688999999975 4689999999999999999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 218 AIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 218 ~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.++++.+.++.++..|..|++.+.+
T Consensus 182 ~wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 182 SWLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999999999999999997754
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function. |
| >cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-07 Score=92.87 Aligned_cols=154 Identities=12% Similarity=-0.047 Sum_probs=104.6
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
++.+|+|+.+.+++. .+-++++..|+|+++.|++.|.|+. ++|.+++.++++++.-+++...++.+.... |..
T Consensus 26 ~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p---~pv 100 (197)
T cd08869 26 SSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSM---APH 100 (197)
T ss_pred cCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCC---CCC
Confidence 567999999999665 4568999999999999999998863 999999999999987655433233221110 000
Q ss_pred EEE-EEEE-EEEeecCCCCceEEEEEEc-------cc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EAR-VVLD-LQELIHSASDRELYFSMVD-------GD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~ar-vvLd-v~E~~~~~~~rrI~F~~ve-------GD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..| .++. ..........-.|.++-+. |- ...+.|.|.++|.+ .++|+|+|.+.++|++++|.++++..
T Consensus 101 ~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~-~~~t~vty~~~~Dp~G~iP~wl~N~~ 179 (197)
T cd08869 101 PTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCG-SGKSRVTHICRVDLRGRSPEWYNKVY 179 (197)
T ss_pred CCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECC-CCCeEEEEEEEECCCCCCCceeecch
Confidence 000 1110 0010000011123333332 11 14567999999985 57899999999999999999996666
Q ss_pred HHhCHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALAC 238 (732)
Q Consensus 225 ir~~L~~~L~ALk~ 238 (732)
- .-++..|..||.
T Consensus 180 ~-~~~~~~~~~l~~ 192 (197)
T cd08869 180 G-HLCARELLRIRD 192 (197)
T ss_pred H-hHHHHHHHHHHh
Confidence 5 888899999987
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul |
| >cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-07 Score=91.56 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=105.1
Q ss_pred cCCceEEEEEE---ecCcceeEEEEEEEecCHHHHHHHHhCcccc--ccccccceEEEEEecCCCCeeEEEEEeeeeeEE
Q 004764 78 EQRKVHCEVEV---VSWRERRIKAEMLVNADVDSVWNALTDYERL--ADFVPNLACSGRIPCPYPGRIWLEQRGLQRALY 152 (732)
Q Consensus 78 ~e~~v~v~v~~---v~~~~rrV~asi~V~AP~e~Vw~VLTDYErl--peFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~ 152 (732)
...+++|+.+. +.+.. ++++..|+++++.|+++|.|.+.. ++|.+++.++++|+.-+++...++...-....+
T Consensus 29 ~~~~i~v~~~~~~~~~~~~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~ 106 (208)
T cd08903 29 RTNEVAVSWRPSAEFAGNL--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMK 106 (208)
T ss_pred cCCCEEEEeeecCCCCCcE--EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCC
Confidence 45699999994 44433 889999999999999999999876 999999999999998665543333211110000
Q ss_pred EEEEEEEEEEEEEeecCCCCceEEEE--EEcc-------c-cce----eeEEEEEEecCCCCeeEEEEEEEEecCCCccH
Q 004764 153 WHIEARVVLDLQELIHSASDRELYFS--MVDG-------D-FKK----FEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA 218 (732)
Q Consensus 153 ~~~~arvvLdv~E~~~~~~~rrI~F~--~veG-------D-fk~----f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~ 218 (732)
.+..|=.+.++-... ...+.|... .+.- + ++. +.|.|...+.+ .++|.++|.+.++|++++|.
T Consensus 107 -~vs~RDfV~~~~~~~-~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~-~~~t~v~~~~~~DpkG~iP~ 183 (208)
T cd08903 107 -IISPRDFVDVVLVKR-YEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE-PDKTQLVSFFQTDLSGYLPQ 183 (208)
T ss_pred -CcCCCceEEEEEEEe-cCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC-CCceEEEEEEEeccCCCcCH
Confidence 011111111111000 112223222 1211 1 122 45666555543 46899999999999999999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Q 004764 219 IFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 219 ~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++++.++.+.+...|.+||+.+.
T Consensus 184 ~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 184 TVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999764
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy. |
| >KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=95.21 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=108.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC-EEEE-EEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN-KVRI-LQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g-~~rv-~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
.......|.++++++|++++|++.|-+|+|||+++.|+++.++ .... ..+|+.++. ..+...++++ ++.-+.-
T Consensus 69 ~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~-E~y~S~Vt~~----~p~l~kt 143 (227)
T KOG3177|consen 69 AYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLD-ERYTSNVTCV----KPHLTKT 143 (227)
T ss_pred HHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccc-hhheeeeEEe----cccceEE
Confidence 3445557999999999999999999999999999999998843 3322 345666543 4567775543 4433322
Q ss_pred EEEe-cCCcceeEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 004764 423 EQVE-GDFDSFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 494 (732)
Q Consensus 423 ~~ve-Gdfk~f~G~W~Lep~g--dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~~~ 494 (732)
.-.+ +.|..+...|+|.|-. .+.|.|.|++.|+.. ..+-..+..-++......++.||.++|...+..-.
T Consensus 144 ~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~--S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~ 216 (227)
T KOG3177|consen 144 VCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFK--SLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPES 216 (227)
T ss_pred eeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 2333 6788999999999966 678999999999974 44656667777788889999999999999988744
|
|
| >cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-07 Score=91.82 Aligned_cols=141 Identities=9% Similarity=0.122 Sum_probs=95.8
Q ss_pred EEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEecc---cee-EEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCK---GLL-YMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW-~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~---gll-~~~~~~rvvLdv~e~~~ 417 (732)
..+.+...|++|++++| ++|.|.+.+++|++++.+++++++.+.... ++....- +.+ ..-|..... .....+
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~--~~~~~~ 126 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRR--IERRRD 126 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEE--EEecCC
Confidence 55788999999999998 689999999999999999999988654322 2222110 000 001111111 111112
Q ss_pred CeEEEE-EEe--------cCCc---ceeEEEEEEE-cCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 418 QEISFE-QVE--------GDFD---SFQGKWLFEQ-LGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 418 rrIsf~-~ve--------Gdfk---~f~G~W~Lep-~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
..|... .+. |-.+ ...|.|.+.+ .+++.|.++|.+.++|+ +.+|.++++.++.+.....+.+||+
T Consensus 127 ~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~--G~lP~~lvN~~~~~~~~~~~~~LR~ 204 (209)
T cd08906 127 RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLK--GRLPRYLIHQSLAATMFEFASHLRQ 204 (209)
T ss_pred cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 111 1111 4578888776 67788999999999996 5799999999999999999999999
Q ss_pred HHHh
Q 004764 485 YVEK 488 (732)
Q Consensus 485 rAE~ 488 (732)
+++.
T Consensus 205 ~~~~ 208 (209)
T cd08906 205 RIRD 208 (209)
T ss_pred HHhh
Confidence 9874
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers. |
| >cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=91.20 Aligned_cols=143 Identities=14% Similarity=0.058 Sum_probs=98.6
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee--------e
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ--------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~--------~ 149 (732)
+..+|+|+...- .....+++++.|++|++.|+++|.|.+++++|.+++.++++|+.-+++. .++++-.. |
T Consensus 66 ~~~gI~Vyt~~~-s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~R 143 (240)
T cd08913 66 EKNQVRLYTLEE-DKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQ 143 (240)
T ss_pred ccCCEEEEEEeC-CCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-EEEEEecCCCCCCCCCC
Confidence 568999999543 3346789999999999999999999999999999999999998865554 35543211 1
Q ss_pred -eEEEEEEEE---------EEEEEEEeec-CCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccH
Q 004764 150 -ALYWHIEAR---------VVLDLQELIH-SASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA 218 (732)
Q Consensus 150 -il~~~~~ar---------vvLdv~E~~~-~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~ 218 (732)
++......+ +.+.....+. ++..+.|+. ..+.|-|.|.+.+ .+.|.|+|..+++|+ .+|.
T Consensus 144 DfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~-------~~~~ggw~i~p~~-~~~t~vtY~~~~dPG-~LP~ 214 (240)
T cd08913 144 DFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRG-------ETLCSGFCIWEES-DQLTKVSYYNQATPG-VLPY 214 (240)
T ss_pred eEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEe-------eecccEEEEEECC-CCcEEEEEEEEeCCc-cccH
Confidence 110000000 1111111111 122333333 4467999999975 578999999999998 9999
Q ss_pred HHHHHHHHhCHHH
Q 004764 219 IFLERIIRSDLPV 231 (732)
Q Consensus 219 ~Lv~~~ir~~L~~ 231 (732)
++++.++.+....
T Consensus 215 ~~~N~~~~~~p~~ 227 (240)
T cd08913 215 ISTDIAGLSSEFY 227 (240)
T ss_pred HHhhhhhhccchh
Confidence 9999887765543
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of |
| >cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.4e-07 Score=90.74 Aligned_cols=141 Identities=13% Similarity=0.168 Sum_probs=97.1
Q ss_pred EEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEecc---cee-EEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCK---GLL-YMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW-~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~---gll-~~~~~~rvvLdv~e~~~ 417 (732)
..+.++..|++|++.|+ .++.|++++++|++.|.+++++++.+... .+++.... +++ ..-+...... .....
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~--~~~~~ 126 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCA--KRRGS 126 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEE--EEcCC
Confidence 56778999999999999 88889999999999999999998765432 22222111 000 0011111110 01112
Q ss_pred CeEEE-EEEe--------cCCc--ceeEEEEEEEcCC--CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 418 QEISF-EQVE--------GDFD--SFQGKWLFEQLGS--HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 418 rrIsf-~~ve--------Gdfk--~f~G~W~Lep~gd--G~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
..+.. ..+. |-++ .+.|.|.|+|.++ +.|.++|.+..+|+ +.+|.++++.++.......+.+||+
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~Dpk--G~iP~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCC--CCCCHHHHHHHhHHhHHHHHHHHHH
Confidence 22211 1111 1122 4579999999865 78999999999996 5799999999999999999999999
Q ss_pred HHHh
Q 004764 485 YVEK 488 (732)
Q Consensus 485 rAE~ 488 (732)
+++.
T Consensus 205 ~~~~ 208 (209)
T cd08905 205 RMAS 208 (209)
T ss_pred HHhc
Confidence 9873
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in |
| >cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-06 Score=86.65 Aligned_cols=156 Identities=10% Similarity=-0.066 Sum_probs=108.5
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhC--ccccccccccceEEEEEecCCCCeeEEEEEeee------
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTD--YERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ------ 148 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTD--YErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~------ 148 (732)
+..+++|+.+..+.. ...++++..|+++++.|+++|-| .+..+.|.+++.++++|+.-+++...++.....
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~v 108 (206)
T cd08867 29 TVKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLI 108 (206)
T ss_pred cCCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCcc
Confidence 557899999864443 35699999999999999999999 888999999999999998766554333322110
Q ss_pred --e-eEEEEEEEE-----EEEEEE--Eeec-CCCCceEEEEEEccccceeeEEEEEEecCC-CCeeEEEEEEEEecCCCc
Q 004764 149 --R-ALYWHIEAR-----VVLDLQ--ELIH-SASDRELYFSMVDGDFKKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNF 216 (732)
Q Consensus 149 --~-il~~~~~ar-----vvLdv~--E~~~-~~~~rrI~F~~veGDfk~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~pi 216 (732)
| ++.....-+ .++... +.+. ++.++.|+- ....|-|.++|.+. .++|.++|-+.++|++++
T Consensus 109 s~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~-------~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i 181 (206)
T cd08867 109 SPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRG-------YNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI 181 (206)
T ss_pred CCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEE-------EeecCEEEEEECCCCCCceEEEEEEEeccCCCC
Confidence 1 111110000 000000 0010 111222333 33568999998752 367999999999999999
Q ss_pred cHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 217 PAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 217 P~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
|.++++.++.+.+...+.+||+++
T Consensus 182 P~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 182 PQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred cHHHHHhhhhhhHHHHHHHHHHhc
Confidence 999999999999999999999864
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression |
| >cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-06 Score=81.38 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=106.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
..++++++.+..... ...+++...|+++++.|+++|.|.+.++.|.+.+.++++++..+++...++.+-.... .+.
T Consensus 22 ~~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~---p~~ 98 (193)
T cd00177 22 EKDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPW---PVS 98 (193)
T ss_pred ECCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCC---ccC
Confidence 456899999998874 5679999999999999999999999999999999999999976554322332221110 001
Q ss_pred EEEEEEEEEeecCCCCceEEEEE--Ecc-------c-c--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 ARVVLDLQELIHSASDRELYFSM--VDG-------D-F--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 arvvLdv~E~~~~~~~rrI~F~~--veG-------D-f--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
.|-.+-+..... ...+.+.+.+ ++. + . ..+.|.|.+++.+ +++|+++|.+.++|++++|.++++.+
T Consensus 99 ~Rdfv~~~~~~~-~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~-~~~~~vt~~~~~D~~g~iP~~~~~~~ 176 (193)
T cd00177 99 PRDFVYLRRRRK-LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD-PGKTKVTYVLQVDPKGSIPKSLVNSA 176 (193)
T ss_pred CccEEEEEEEEE-cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC-CCCEEEEEEEeeCCCCCccHHHHHhh
Confidence 110000011000 0112222111 111 1 1 2346889999984 67899999999999999999999999
Q ss_pred HHhCHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALAC 238 (732)
Q Consensus 225 ir~~L~~~L~ALk~ 238 (732)
+.+.+...+..++.
T Consensus 177 ~~~~~~~~~~~~~~ 190 (193)
T cd00177 177 AKKQLASFLKDLRK 190 (193)
T ss_pred hhhccHHHHHHHHH
Confidence 99888888777765
|
This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro |
| >cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.4e-07 Score=90.64 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=100.6
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccceeEEEEEEE-EEEE---EEee-C
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKGLLYMVLHAR-VVMD---ICEQ-H 416 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~gll~~~~~~r-vvLd---v~e~-~ 416 (732)
.+.+..+..|++|++.+.++|.|.+.|++|+|+|.++++++..+.... .++.- . +.|.+..| .++. +... .
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~-~--~PwPv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV-D--LPWPLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE-e--CceEecceEEEEEEEEEeeecc
Confidence 688999999999999999999999999999999999999877554322 22211 1 11111111 0000 0000 2
Q ss_pred CCeEE--EEEEe------------------cCC--cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhh
Q 004764 417 EQEIS--FEQVE------------------GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYED 474 (732)
Q Consensus 417 ~rrIs--f~~ve------------------Gdf--k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~ 474 (732)
++.|. .+.+. |.. ..+.|.|.|+|.+++.|.++|.+.++|++ .++|.++++.+.+..
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g-~~IP~~liN~~~k~~ 200 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKM-SLVPKSLLNFVARKF 200 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCc-ccCCHHHHHHHHHHH
Confidence 23232 22221 111 25689999999999999999999999863 459999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 004764 475 LPSNLCAIRDYVEK 488 (732)
Q Consensus 475 l~~~L~ALK~rAE~ 488 (732)
...++.+|++.|++
T Consensus 201 ~~~~~~~l~k~~~~ 214 (215)
T cd08877 201 AGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
|
Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a |
| >COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-06 Score=81.62 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=90.0
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
++.+..|++|+++||++|+|.|.+.+-+|.|++++.. ++......+-.-|.+-.++..++.+.....+++.|..+-.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~---g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~ 79 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN---GDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITINGS 79 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec---CCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEee
Confidence 5678899999999999999999999999999998864 3344332222224344566666554332345677766643
Q ss_pred e---cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 426 E---GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 426 e---Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
- +-|..+...-.+.+.++| |+|.|.+..+.. .+...+-.+.++..++.++..+-+-
T Consensus 80 G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~g---g~laqlGsr~i~~~~~kli~~~~~~ 138 (146)
T COG3427 80 GGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVG---GKLAQLGSRLIDSVARKLINRFFDC 138 (146)
T ss_pred cccccceeeeeeEEEEEEcCCC-cEEEEEEEcccc---HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3 145567888899998887 999999988752 2445565666655555555544433
|
|
| >cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=79.05 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=84.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
++.++.|+||+++||++++|.++|++|++... ...--..|+...+...+. +. .....++ +++ .++++|+|+-.
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~~~~~-~~--~~~~~~v-~~~--~~~~~l~~~~~ 74 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYRRGDD-GT--VDVEGEV-LES--DPPRRLVHTWR 74 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEEeCCC-cc--cccceEE-EEe--cCCCeEEEEEe
Confidence 56789999999999999999999999998732 111122344444322221 11 1122221 112 46788888865
Q ss_pred ecC------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGD------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGd------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.+. .......|.|++.++ +|+|+++...-+ ++..+.....+....+|+.||+++|.
T Consensus 75 ~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 75 AVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFP------PGSPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred cCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCC------CchhHHHhhhcCHHHHHHHHHHHhcC
Confidence 422 125577889999765 598888766432 12246677788999999999999874
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea. |
| >smart00234 START in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.8e-06 Score=82.49 Aligned_cols=162 Identities=9% Similarity=0.015 Sum_probs=108.8
Q ss_pred CCceEEEEEEecC--cceeEEEEEEEecCHHH-HHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 79 QRKVHCEVEVVSW--RERRIKAEMLVNADVDS-VWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 79 e~~v~v~v~~v~~--~~rrV~asi~V~AP~e~-Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
+.++.++-+...+ ....+++...|+++++. +-.++.|.+..++|.+++.++++++.-+++...++.+-.... . ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~-~-p~ 105 (206)
T smart00234 28 ENGDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVA-G-PV 105 (206)
T ss_pred CCcceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEeccc-C-cC
Confidence 4566666676654 35679999999999986 778999999999999999999999875544322222211110 0 00
Q ss_pred EEEEEEEEEEe-ecCCCCceEEEEEEccc--------c--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 156 EARVVLDLQEL-IHSASDRELYFSMVDGD--------F--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 156 ~arvvLdv~E~-~~~~~~rrI~F~~veGD--------f--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
..|=.+.+... ........|..+.++.+ + ..+.|.|.+++.+ ++.|.++|-..++|++++|.++++.+
T Consensus 106 ~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~D~~G~iP~~lvn~~ 184 (206)
T smart00234 106 SPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG-NGPSKVTWVSHADLKGWLPHWLVRSL 184 (206)
T ss_pred CCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC-CCCeEEEEEEEEecCCCccceeehhh
Confidence 11100000000 00011112222222211 1 4567999999986 45699999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHhh
Q 004764 225 IRSDLPVNLQALACRAERS 243 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr~ 243 (732)
.+......+..|++.++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 185 IKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 9999999999999987764
|
putative lipid-binding domain in StAR and phosphatidylcholine transfer protein |
| >cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-06 Score=87.49 Aligned_cols=153 Identities=10% Similarity=-0.012 Sum_probs=97.7
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEA 157 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~a 157 (732)
+++||+|+++. ......+++++.+++|+++++++|.|.+++++|.+.+.++++|+.-+++.. ++++-.... .....-
T Consensus 63 dkdgIkVytr~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw-~Pvk~R 139 (236)
T cd08914 63 TVEKIKIYTLE-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIV-NNDKPK 139 (236)
T ss_pred ccCCEEEEEec-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-EEEEecCCC-CCCCCc
Confidence 77899999996 444678999999999999999999999999999999999999988655543 554321110 000111
Q ss_pred EEEEEEEEeecCCCCce--EEEEEEcc-------c---cce-eeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH-H
Q 004764 158 RVVLDLQELIHSASDRE--LYFSMVDG-------D---FKK-FEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE-R 223 (732)
Q Consensus 158 rvvLdv~E~~~~~~~rr--I~F~~veG-------D---fk~-f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~-~ 223 (732)
..++...-..+.+.+.. |..+.+.- + .+. +.|. .|++++ .++|.|+|.+.++| +.+|-+.++ .
T Consensus 140 D~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~-~~~~~VtY~~~~dP-g~lp~~~~n~~ 216 (236)
T cd08914 140 DLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAID-SNSCTVSYFNQISA-SILPYFAGNLG 216 (236)
T ss_pred eEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcC-CCcEEEEEEEEcCC-ccchheEEecc
Confidence 12221111111111111 12222211 1 134 6787 999985 57899999999999 999999874 2
Q ss_pred HHHhCHHHHHHHH
Q 004764 224 IIRSDLPVNLQAL 236 (732)
Q Consensus 224 ~ir~~L~~~L~AL 236 (732)
...+.+...+.+.
T Consensus 217 ~~~~~~~~~~~~~ 229 (236)
T cd08914 217 GWSKSIEETAASC 229 (236)
T ss_pred hhhhHHHHHHHHH
Confidence 2333344444433
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation. |
| >cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-06 Score=84.56 Aligned_cols=142 Identities=15% Similarity=0.217 Sum_probs=97.0
Q ss_pred EEEEEEEEEcCCHHHHHH-HHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccceeEEEEEEE--EEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKGLLYMVLHAR--VVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~-vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~gll~~~~~~r--vvLdv~e~~~rr 419 (732)
..+.+...|++|+++|++ ++.|++..++|.+.|.+++++++.++... ++...... ..+....| +.++.....+..
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCc-CCCcccccceEEEEEEEecCCe
Confidence 458888899999999986 67799999999999999999988654433 22221110 00000110 101111111222
Q ss_pred --EEEEEEe--------cCCc--ceeEEEEEEEcCC--CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 420 --ISFEQVE--------GDFD--SFQGKWLFEQLGS--HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 420 --Isf~~ve--------Gdfk--~f~G~W~Lep~gd--G~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
|....+. |-++ .+.|.|.|+|.++ +.|.++|.+..+|+ +++|.++++.++...+...+.+||++
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~--G~iP~~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLK--GWLPQYLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCC--CCCcceeeehhhHHHHHHHHHHHHHH
Confidence 2333333 1122 4569999999864 67999999999985 67999999999999999999999999
Q ss_pred HHh
Q 004764 486 VEK 488 (732)
Q Consensus 486 AE~ 488 (732)
+++
T Consensus 205 ~~~ 207 (208)
T cd08868 205 IAT 207 (208)
T ss_pred Hhh
Confidence 875
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth |
| >cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=77.68 Aligned_cols=113 Identities=12% Similarity=0.269 Sum_probs=80.3
Q ss_pred eEEEEEEEecCHHHHHHHHhCccc-c-ccccccceEEEEEecC-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYER-L-ADFVPNLACSGRIPCP-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYEr-l-peFiP~v~~SeVLe~~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
.++.++.|+||+++||+++.|+++ + +.|.|.++++++++.. +.|.+|.+..+...-..+ +...+.+.. +.
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~-----~kE~l~~~D--~~ 74 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKY-----VKERIDAVD--EE 74 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceE-----EEEEEEEEc--cc
Confidence 478999999999999999999994 5 5678888999887642 123445443322210000 112222222 45
Q ss_pred CceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC
Q 004764 172 DRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN 215 (732)
Q Consensus 172 ~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p 215 (732)
.++|.|++++|+ |+.|.+..+|.+.+ +++|.+.|++.++|.-.
T Consensus 75 ~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~-~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 75 NKTYKYTVIEGDVLKDGYKSYKVEIKFVPKG-DGGCVVKWTIEYEKKGD 122 (148)
T ss_pred ccEEEEEEEecccccCceEEEEEEEEEEECC-CCCEEEEEEEEEEECCC
Confidence 899999999995 57889999999974 57899999999988765
|
This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth |
| >cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.4e-06 Score=84.58 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=97.6
Q ss_pred ceeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE--EEEEe-ccceeEEEEEEEEEEEEEeeC
Q 004764 341 GVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR--ILQEG-CKGLLYMVLHARVVMDICEQH 416 (732)
Q Consensus 341 g~~~~V~asI~I-~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r--v~q~g-~~gll~~~~~~rvvLdv~e~~ 416 (732)
+....+.+...| ++|++.++++|.|.+..++|.+.+.++++++..+.... ..... -..+...-+.... .....
T Consensus 44 ~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r---~~~~~ 120 (222)
T cd08871 44 SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLR---SWLEF 120 (222)
T ss_pred CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEE---EEEeC
Confidence 334667777776 68999999999999999999999999999987643322 11111 0000000111110 11111
Q ss_pred CCe--EEEEEEe--------cCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 417 EQE--ISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 417 ~rr--Isf~~ve--------Gdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
+.. |....+. |-++ .+.|.|.|++.++++|.++|....+|. +++|.++++.++......+|..|++
T Consensus 121 ~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~--G~IP~~lvN~~~~~~~~~~l~~l~k 198 (222)
T cd08871 121 GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPK--GSLPKWVVNKATTKLAPKVMKKLHK 198 (222)
T ss_pred CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCC--CCcCHHHHHHHHHHHhHHHHHHHHH
Confidence 122 2222222 2122 346889999998888999999999985 6799999999999999999999999
Q ss_pred HHHhhh
Q 004764 485 YVEKRE 490 (732)
Q Consensus 485 rAE~~~ 490 (732)
.+++-.
T Consensus 199 ~~~~y~ 204 (222)
T cd08871 199 AALKYP 204 (222)
T ss_pred HHHHHH
Confidence 888643
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe |
| >PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-05 Score=75.68 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred EEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe--EEEEEEe
Q 004764 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE 426 (732)
Q Consensus 349 sI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr--Isf~~ve 426 (732)
++.|++|+++||++|+|++++..-+|+|++.+.+. +.........-|.+-.++..++.+.-. .++.. |.++...
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~i~~~~~g~~~~~~~-~~~~~~~~~~~g~g 77 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGPIKGTFDGEVRITEI-DPPESYTLEFEGRG 77 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCCCEEEEEEEEEEEEE-ETTTEEEEEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEeccEEEEEEEEEEEEEc-CCCcceEeeeeccC
Confidence 57899999999999999999999999999988764 444333332233333556555443322 23443 5555443
Q ss_pred cC-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 427 GD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 427 Gd-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.. -....+.-++...+++.|+|.|+.+++..+ ....+.++++......+++.|-+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G---~la~~g~~~i~~~~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 78 RGGGSSASANITLSLEDDGGTRVTWSADVEVGG---PLASLGQRLIESVARRLIEQFFENLER 137 (140)
T ss_dssp CTCCEEEEEEEEEEECCCTCEEEEEEEEEEEEC---HHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEEEEEcCCCCCcEEEEEEEEEEcc---CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 113344445555555559999999998742 345566677777777776666655543
|
The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A. |
| >cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-05 Score=81.20 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=100.3
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee------e
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ------R 149 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~------~ 149 (732)
.+.++++...++..+ .+.++++++|+|+++.|++.|.|. ++.|.+++.++++|+.-+++.-.++++... |
T Consensus 34 ~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~R 111 (204)
T cd08908 34 TSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPAR 111 (204)
T ss_pred CCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCc
Confidence 467788888887776 467999999999999999999888 799999999999999866554334444211 1
Q ss_pred -e--E-EEEEEEE---EEEEEE-EeecCCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH
Q 004764 150 -A--L-YWHIEAR---VVLDLQ-ELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 150 -i--l-~~~~~ar---vvLdv~-E~~~~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv 221 (732)
+ + .|..... .++... ..++..+...|+ ...+.|.|.|+|.+ .++|+|+|.+.++|++.+|.+++
T Consensus 112 D~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR-------~~~~~~~w~i~P~g-~g~t~vtyi~~~DPgG~iP~W~~ 183 (204)
T cd08908 112 DYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVR-------VNVLLSRYLIEPCG-SGKSKLTYMCRIDLRGHMPEWYT 183 (204)
T ss_pred EEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceE-------EEEEeeEEEEEECC-CCcEEEEEEEEeCCCCCCcHHHH
Confidence 1 1 1100000 111111 111000111222 25578999999985 47899999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHH
Q 004764 222 ERIIRSDLPVNLQALAC 238 (732)
Q Consensus 222 ~~~ir~~L~~~L~ALk~ 238 (732)
+.+ -..+...|..||.
T Consensus 184 N~~-g~~~~~~~~~~r~ 199 (204)
T cd08908 184 KSF-GHLCAAEVVKIRD 199 (204)
T ss_pred hhH-HHHHHHHHHHHHh
Confidence 864 3445555555654
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear. |
| >cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.2e-06 Score=84.02 Aligned_cols=139 Identities=12% Similarity=0.150 Sum_probs=90.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccc--e--eEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKG--L--LYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~g--l--l~~~~~~rvvLdv~e~~~r 418 (732)
..+.+...|++|+++||++|.|.+++++|.+.+++++|++..++... ++++.... . ...-|...... ....+.
T Consensus 45 ~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~--~~~~~~ 122 (205)
T cd08874 45 HGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVE--AKEGEL 122 (205)
T ss_pred ceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEE--EECCCc
Confidence 56778889999999999999999999999999999999987655443 33321111 0 00011111110 111121
Q ss_pred -eEEEEEEec---------CCc--ceeEEEEEEEc---CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 419 -EISFEQVEG---------DFD--SFQGKWLFEQL---GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 419 -rIsf~~veG---------dfk--~f~G~W~Lep~---gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
-|..+.+.- -.+ .+.|.|.++|. ++|.|+|+|.+.++|.+ +-+|.++++.++.+.... +..|+
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPgg-g~iP~~l~N~~~~~~p~~-~~~~~ 200 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCG-PDVPAQLLSSLSKRQPLV-IARLA 200 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCC-CCCCHHHHhHHHHhccHH-HHHHH
Confidence 233333321 111 56899999999 88899999999999962 458999999888766543 33444
Q ss_pred HHH
Q 004764 484 DYV 486 (732)
Q Consensus 484 ~rA 486 (732)
.+.
T Consensus 201 ~~~ 203 (205)
T cd08874 201 LFL 203 (205)
T ss_pred HHh
Confidence 443
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy. |
| >COG5637 Predicted integral membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-06 Score=83.44 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=101.6
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
-.++.+|+|++|++.||++-.|+|++|.||.-+.+++|++. ++ ..|....-.-+.|.-.++++-+ ..+.
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVldd---kr-SrW~~~ap~g~~v~Wea~it~d-------~~~e 138 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDD---KR-SRWKANAPLGLEVEWEAEITKD-------IPGE 138 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCC---Cc-cceeEcCCCCceEEEeehhhcc-------CCCc
Confidence 35889999999999999999999999999999999999753 33 1232222111222224444333 2478
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHh----CHHHHHHHHHHHHHhh
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRS----DLPVNLQALACRAERS 243 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~----~L~~~L~ALk~raEr~ 243 (732)
+|.|+-+.|.--..+|.-++++.+ |+.|.|..++...|..+.-..++.+++-+ .+..-|+..|..+|..
T Consensus 139 ~I~W~Sl~Ga~v~NsG~VrF~~~p-g~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~~ 211 (217)
T COG5637 139 RIQWESLPGARVENSGAVRFYDAP-GDSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQENG 211 (217)
T ss_pred EEeeecCCCCcCCCCccEEeeeCC-CCceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHcc
Confidence 999999999655567999999986 67899999999988888877777776654 5555666777766653
|
|
| >cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-05 Score=82.81 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=88.2
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE-
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE- 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~- 156 (732)
++.+|+|+.+. +.+...++++..|++|+++|+++|.|.+..++|.+.+.++++|+.-+++...+++..... |...
T Consensus 62 ~k~gIkVytr~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~P---wPvk~ 137 (235)
T cd08873 62 STTSVTLYTLE-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSL---TSEKP 137 (235)
T ss_pred cCCCEEEEEec-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCC---CCCCC
Confidence 77899999998 555667899999999999999999999999999999999999987554433344432210 0000
Q ss_pred EEEEEEEEEeecCCCC--ceEEEEEEc-------cc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCC
Q 004764 157 ARVVLDLQELIHSASD--RELYFSMVD-------GD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN 215 (732)
Q Consensus 157 arvvLdv~E~~~~~~~--rrI~F~~ve-------GD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p 215 (732)
-..++...-..+...+ -.|.++-+. .+ .+.+.|-|.|+|.+ .++|.|+|.++++|++.
T Consensus 138 RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~-~~~t~VtY~~~~dPg~~ 207 (235)
T cd08873 138 NDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDC-GTCTEVSYYNETNPKLL 207 (235)
T ss_pred ceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECC-CCcEEEEEEEEcCCCcc
Confidence 0011110100000111 123333332 11 25677999999985 57899999999999864
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an |
| >cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-06 Score=81.29 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=87.5
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-eCCCeEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEISF 422 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~rrIsf 422 (732)
+.+..+++|+||+++||++|+|.++|++|++.. ..-...|+..++...+. +. ..+..+ +.+ .++++|.|
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~~~~~~-~~--~~~~~~----v~e~~p~~~l~~ 80 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEFVMDDE-EG--PNATGT----ILACEPPRLLAF 80 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEEEecCC-CC--CccceE----EEEEcCCcEEEE
Confidence 679999999999999999999999999999943 11122344444332221 11 122232 222 35678998
Q ss_pred EEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 423 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
....++ ......|+|++.+ ++|+|++...+.+. ......+..+....|..|++++|+..
T Consensus 81 ~~~~~~-~~~~~~~~l~~~~-~gT~v~~~~~~~~~-------~~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 81 TWGEGG-GESEVRFELAPEG-DGTRLTLTHRLLDE-------RFGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EecCCC-CCceEEEEEEEcC-CCEEEEEEEeccCc-------hhhhhhhcccHHHHHHHHHHHHcCCC
Confidence 876554 3446788899876 56999998876542 13456667888999999999998654
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-05 Score=79.77 Aligned_cols=140 Identities=6% Similarity=-0.001 Sum_probs=95.4
Q ss_pred EEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC--EEEEEEEecccee--EEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN--KVRILQEGCKGLL--YMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I-~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g--~~rv~q~g~~gll--~~~~~~rvvLdv~e~~~r 418 (732)
..+.+...+ ++|++++++++.|.+..++|.+.+.+.++++..++ ...+++....... ..-+....+ .....+.
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~--~~~~~~~ 127 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARR--LWESDDR 127 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEE--EEEcCCC
Confidence 568888888 56999999999999999999999999999988654 2222222111100 000111110 1111111
Q ss_pred e--EEEEEEe-------cC--CcceeEEEEEEEc--CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 E--ISFEQVE-------GD--FDSFQGKWLFEQL--GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 r--Isf~~ve-------Gd--fk~f~G~W~Lep~--gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
. |..+.+. |. +..+.|.|.++|. ++++|.+.|....+|. +.+|.++++.++...+...|+.|++.
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~--G~IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPD--GGIPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCC--CCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 2222222 12 1267899999998 7778999999888884 56999999999999999999999988
Q ss_pred HH
Q 004764 486 VE 487 (732)
Q Consensus 486 AE 487 (732)
+.
T Consensus 206 ~~ 207 (209)
T cd08870 206 LR 207 (209)
T ss_pred Hh
Confidence 74
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo |
| >cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-05 Score=75.23 Aligned_cols=138 Identities=11% Similarity=0.121 Sum_probs=93.6
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEE-EEE--eccceeEEEEEEEEEEEEEe-eCCC
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQE--GCKGLLYMVLHARVVMDICE-QHEQ 418 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv-~q~--g~~gll~~~~~~rvvLdv~e-~~~r 418 (732)
...+.+...|++|+++|++++.|.+.++.|.+.+.++++++..++...+ +.. ....+....+.. +.... ..++
T Consensus 38 ~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~---~~~~~~~~~~ 114 (193)
T cd00177 38 LKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVY---LRRRRKLDDG 114 (193)
T ss_pred ceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEE---EEEEEEcCCC
Confidence 4678899999999999999999999999999999999999987653322 211 110000000111 00111 1223
Q ss_pred eEEE--EEEec--------CCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 EISF--EQVEG--------DFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 rIsf--~~veG--------dfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
.+.+ ..++. -.+ .+.+.|.|++.+++.|+++|...++|. +.+|.++++.++.......++.++..
T Consensus 115 ~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~--g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 115 TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPK--GSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCC--CCccHHHHHhhhhhccHHHHHHHHHh
Confidence 3222 22222 112 235779999998889999999999985 57899999999998888887777654
|
This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro |
| >cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-05 Score=80.09 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=93.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcc--cccCcCCcEEEEEEeeCCEEE-EEEEecc---cee-EEEEEEEEEEEEEe-eCC
Q 004764 346 VVASITVKAPVSEVWNVMTAYETL--PEIVPNLAISKILSRENNKVR-ILQEGCK---GLL-YMVLHARVVMDICE-QHE 417 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~y--Pef~P~V~ssrVLer~~g~~r-v~q~g~~---gll-~~~~~~rvvLdv~e-~~~ 417 (732)
+.++.+|++++++|+++|.|.+++ ++|.+.|.+++++++-++... +.+.... +++ ..-+... +... ..+
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~~---~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVDV---VLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCcCCCceEEE---EEEEecCC
Confidence 778999999999999999999887 999999999999998655433 2221110 000 0011111 1111 123
Q ss_pred CeEEEE--EEec--------CCcc----eeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 418 QEISFE--QVEG--------DFDS----FQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 418 rrIsf~--~veG--------dfk~----f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
..|... .+.. -++. ..|.|...+.++++|.++|.+.++|+ +.+|.++++.++.+.+...+..||
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS--GYLPQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC--CCcCHHHHHHHhhHHHHHHHHHHH
Confidence 333332 2221 1222 45566666556678999999999996 679999999999999999999999
Q ss_pred HHHHh
Q 004764 484 DYVEK 488 (732)
Q Consensus 484 ~rAE~ 488 (732)
+.+.+
T Consensus 203 ~~~~~ 207 (208)
T cd08903 203 KAVKA 207 (208)
T ss_pred HHHhh
Confidence 98754
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy. |
| >cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=81.36 Aligned_cols=142 Identities=10% Similarity=-0.066 Sum_probs=95.1
Q ss_pred EEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--CEEEEEEEecccee--EEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLL--YMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I-~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll--~~~~~~rvvLdv~e~~~r 418 (732)
..+.+...+ ++|++.+++++.|.+..++|.+.+.+++++++.. +...+++....... ..-+.....+... ....
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~-~~~~ 123 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIID-EENK 123 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEc-CCCC
Confidence 457776656 9999999999999999999999999999998743 32222222111100 0001111111111 1112
Q ss_pred e--EEEEEEe--------cCCc--ceeEEEEEEEcC---CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 419 E--ISFEQVE--------GDFD--SFQGKWLFEQLG---SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 419 r--Isf~~ve--------Gdfk--~f~G~W~Lep~g---dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
. |..+.+. |.++ .+.|.|.++|.+ +++|.+.|....+|+ +.+|.++++.+..+.++..|+.|+
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHHH
Confidence 2 3333332 2222 678999999973 557888888877884 679999999999999999999999
Q ss_pred HHHHh
Q 004764 484 DYVEK 488 (732)
Q Consensus 484 ~rAE~ 488 (732)
+.+.+
T Consensus 202 ~a~~~ 206 (207)
T cd08911 202 NAALK 206 (207)
T ss_pred HHHhc
Confidence 98753
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol. |
| >cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-05 Score=72.03 Aligned_cols=129 Identities=15% Similarity=0.023 Sum_probs=85.8
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
+..++.|+||++.||++|||.++|++|++.... ......|++......+. . .+ .....+.+.. .+++|
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~~--~~~~~~G~~~~~~~~~~-~--~~----~~~~~v~~~~---~~~~l 69 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTTV--ESDWKVGSAFEYRRGDD-G--TV----DVEGEVLESD---PPRRL 69 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheeccccc--ccCCcCCCeEEEEeCCC-c--cc----ccceEEEEec---CCCeE
Confidence 578999999999999999999999999988331 11223455543322211 0 01 1111222222 36788
Q ss_pred EEEEEccc------cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 176 YFSMVDGD------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 176 ~F~~veGD------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.|+...++ .....-.|.|++.+ ++|+|+++....+.. ......+++....+|..||+.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~t~l~~~~~~~~~~----~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 70 VHTWRAVWDPEMAAEPPSRVTFEIEPVG--DVVKLTVTHDGFPPG----SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred EEEEecCCCcccCCCCCEEEEEEEEecC--CcEEEEEEecCCCCc----hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 88876432 23567789999854 589998888875432 246677888999999999998873
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea. |
| >cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-05 Score=79.90 Aligned_cols=146 Identities=18% Similarity=0.113 Sum_probs=95.4
Q ss_pred eeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEe-c-cceeEEE
Q 004764 327 EVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEG-C-KGLLYMV 403 (732)
Q Consensus 327 Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g-~-~gll~~~ 403 (732)
+|..+..++ +-....+.++..|+|++++|++.+.|.. ++|.+.+.+++++++.+... .+++.. . ..+...-
T Consensus 31 ~I~~k~~~~----~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RD 104 (197)
T cd08869 31 ELAFKKVDD----GHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRD 104 (197)
T ss_pred EEEEEeCCC----CCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCce
Confidence 566666532 2133668999999999999999998863 99999999999998865432 222221 1 1111011
Q ss_pred EEEEEEEEEEe--eCCC--eEEEEEEe-------cCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHH
Q 004764 404 LHARVVMDICE--QHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEV 470 (732)
Q Consensus 404 ~~~rvvLdv~e--~~~r--rIsf~~ve-------Gdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~ 470 (732)
|... +... .... .|.++.++ |-++ .+.|.|.++|.++++|+|+|.+.++|+ +.+|.++ ...
T Consensus 105 fV~~---r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~--G~iP~wl-~N~ 178 (197)
T cd08869 105 YVVL---RTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLR--GRSPEWY-NKV 178 (197)
T ss_pred EEEE---EEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCC--CCCCcee-ecc
Confidence 1111 1111 1122 34555553 2222 457999999998889999999999995 5688877 444
Q ss_pred HHhhHHHHHHHHHH
Q 004764 471 IYEDLPSNLCAIRD 484 (732)
Q Consensus 471 lr~~l~~~L~ALK~ 484 (732)
+..-+...|..||+
T Consensus 179 ~~~~~~~~~~~l~~ 192 (197)
T cd08869 179 YGHLCARELLRIRD 192 (197)
T ss_pred hHhHHHHHHHHHHh
Confidence 55778888888886
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul |
| >PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0001 Score=73.72 Aligned_cols=159 Identities=15% Similarity=0.058 Sum_probs=104.2
Q ss_pred CceEEEEEEecC----cceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeee--EEE
Q 004764 80 RKVHCEVEVVSW----RERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRA--LYW 153 (732)
Q Consensus 80 ~~v~v~v~~v~~----~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~i--l~~ 153 (732)
.+..+++..... ....+++...|+++++.++..|-|... +|.+.+.++++++.-+++...++.+..... ...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~ 105 (206)
T PF01852_consen 28 KNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVS 105 (206)
T ss_dssp TTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSS
T ss_pred CCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCC
Confidence 334445555432 567799999999999988888887776 999999999999985555332222221110 000
Q ss_pred EEEEEEEEEEEEeecCCCCceEEEEEEcc--------c-c--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH
Q 004764 154 HIEARVVLDLQELIHSASDRELYFSMVDG--------D-F--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE 222 (732)
Q Consensus 154 ~~~arvvLdv~E~~~~~~~rrI~F~~veG--------D-f--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~ 222 (732)
.... +.+...... .....-|.++-++. . . ..+-+.|.+++.+ ++.|.++|...++|++++|.++++
T Consensus 106 ~RDf-v~~~~~~~~-~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~-~~~~~vt~~~~~D~~G~iP~~~~n 182 (206)
T PF01852_consen 106 PRDF-VFLRSWRKD-EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG-DGRTRVTYVSQVDPKGWIPSWLVN 182 (206)
T ss_dssp EEEE-EEEEEEEEC-TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET-TCEEEEEEEEEEESSSSSHHHHHH
T ss_pred CcEE-EEEEEEEEe-ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc-CCCceEEEEEEECCCCCChHHHHH
Confidence 0000 000000110 01111222322211 1 1 4566899999986 456999999999999999999999
Q ss_pred HHHHhCHHHHHHHHHHHHHhh
Q 004764 223 RIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 223 ~~ir~~L~~~L~ALk~raEr~ 243 (732)
.++.+.++..+..+++++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 183 MVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B .... |
| >smart00234 START in StAR and phosphatidylcholine transfer protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-05 Score=77.56 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=98.5
Q ss_pred eEEEEEEEEEcCCHHH-HHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEecccee-EEEEEEEEEEEEEe-eCCC-
Q 004764 343 HRCVVASITVKAPVSE-VWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLL-YMVLHARVVMDICE-QHEQ- 418 (732)
Q Consensus 343 ~~~V~asI~I~APpE~-VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll-~~~~~~rvvLdv~e-~~~r- 418 (732)
...+.+...|+++++. +-+++.|.+..++|.+.|.++++++..++...+......... ...-..-+.++... ..+.
T Consensus 44 ~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~ 123 (206)
T smart00234 44 GEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGS 123 (206)
T ss_pred eEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCc
Confidence 4778999999999996 778999999999999999999999876443222111111100 01000011111111 1222
Q ss_pred -eEEEEEEe--------cCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 419 -EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 419 -rIsf~~ve--------Gdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.|..+.+. |-++ .+.|.|.|+|.+++.|+++|....+|. +++|.++++.+........+..+++.++
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~--G~iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLK--GWLPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecC--CCccceeehhhhhhhHHHHHHHHHHHHH
Confidence 23333333 1122 467899999999888999999999985 5799999999999999999999988876
Q ss_pred hh
Q 004764 488 KR 489 (732)
Q Consensus 488 ~~ 489 (732)
..
T Consensus 202 ~~ 203 (206)
T smart00234 202 KH 203 (206)
T ss_pred HH
Confidence 53
|
putative lipid-binding domain in StAR and phosphatidylcholine transfer protein |
| >cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.5e-05 Score=71.18 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=84.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+..+..|+||+++||++++|-+....|++. +..+++--+.|+..++...+..|.. +....++ +++ .++++|.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v-~e~--~p~~~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVF-LEI--EPPERIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEEE-EEE--cCCCEEE
Confidence 456788999999999999999999999852 2223332344555454444333432 2222221 222 4778999
Q ss_pred EEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|....++. ...-.|+|++.+ ++|+|+++..+... ......+...+.......|..|++++++
T Consensus 78 ~t~~~~~~-~~~v~~~~~~~~-~gT~ltl~~~~~~~---~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 78 YDHGSGPP-RFRLTVTFEEQG-GKTRLTWRQVFPTA---AERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EEeccCCC-cEEEEEEEEECC-CCEEEEEEEEcCCH---HHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 98654321 346778999977 56999998765321 0112223455677788889999888763
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.4e-05 Score=76.02 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=89.5
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+.|+.++.|+||++.||++|+|.+++++|++... .+...|+.++.. .+... .......+.+.. ++.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~----~~~~~G~~~~~~-~~~~~------~~~~~~~v~e~~---p~~ 76 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPGT----GDLRVGGRVEFV-MDDEE------GPNATGTILACE---PPR 76 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCCC----CCcccCceEEEE-ecCCC------CCccceEEEEEc---CCc
Confidence 5799999999999999999999999999999542 222234443222 11100 001112223332 467
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
+|.|+...++ ......|.|++. +++|+|+|.....|+. -....+...-...|..|++.+|+..
T Consensus 77 ~l~~~~~~~~-~~~~~~~~l~~~--~~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 77 LLAFTWGEGG-GESEVRFELAPE--GDGTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEEEecCCC-CCceEEEEEEEc--CCCEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 8999887655 345678889985 4689999999997665 2356668888999999999999753
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00014 Score=69.53 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=78.0
Q ss_pred EEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEE-EEeeeeeEEEEEEEEEEEEEEEeecCCCCceEE
Q 004764 98 AEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLE-QRGLQRALYWHIEARVVLDLQELIHSASDRELY 176 (732)
Q Consensus 98 asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~-Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~ 176 (732)
+++.|++|+++||+.|+|++++..-+|++++.+++ + ++.... .++ ...+...+ ...+.+.+... +...+|.
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~---~-~~~~~~~~v~-vG~i~~~~--~g~~~~~~~~~-~~~~~~~ 72 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKV---G-DEYKGKVKVK-VGPIKGTF--DGEVRITEIDP-PESYTLE 72 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEE---C-TEEEEEEEEE-SCCCEEEE--EEEEEEEEEET-TTEEEEE
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeec---C-cEEEEEEEEE-eccEEEEE--EEEEEEEEcCC-CcceEee
Confidence 47899999999999999999999999999998775 3 443221 122 22233333 34444455442 1222255
Q ss_pred EEEEccc-cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 177 FSMVDGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 177 F~~veGD-fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++-.... --...+.-++...+.++ |+|+|++++.....+ +.+++++++.....+++.+-+..+
T Consensus 73 ~~g~g~~~~~~~~~~~~~~~~~~~~-T~v~~~~~~~~~G~l-a~~g~~~i~~~~~~l~~~f~~~l~ 136 (140)
T PF06240_consen 73 FEGRGRGGGSSASANITLSLEDDGG-TRVTWSADVEVGGPL-ASLGQRLIESVARRLIEQFFENLE 136 (140)
T ss_dssp EEEEECTCCEEEEEEEEEEECCCTC-EEEEEEEEEEEECHH-HHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCccceEEEEEEEEEcCCCCC-cEEEEEEEEEEccCH-HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6554321 22333444444443334 999999999977765 344455555555555555444433
|
The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A. |
| >cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.8e-05 Score=70.71 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=79.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-eCCCeEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEISFE 423 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~rrIsf~ 423 (732)
.++.++.|+||+++||++++|.+.|++|++... .......+.+..+...+..+ ..+..+ +.+ .++++|.|.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~---~~~~~~----i~~~~p~~~l~~~ 73 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH---GVFPVT----VVEVDPPRRFSFR 73 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc---cceEEE----EEEeCCCcEEEEE
Confidence 378899999999999999999999999999753 11111111111222211111 112222 222 467888888
Q ss_pred EEecC---------CcceeEEEEEEEcCCCeEEEEEEEE-EEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 424 QVEGD---------FDSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 424 ~veGd---------fk~f~G~W~Lep~gdG~TrVty~v~-~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
...+. -......|+|++.++ +|+|++... +...... ... .........-..+|..|++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~~~~~-~~~-~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDALPAE-RRA-EAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCCCChH-HHH-HHHHhhhhhHHHHHHHHHHHhc
Confidence 64322 113457889999875 499999765 3211000 011 1334577888899999999876
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=6e-05 Score=79.11 Aligned_cols=129 Identities=7% Similarity=0.008 Sum_probs=83.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccc----eeEEEEEEEEEEEEEeeCCC-
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG----LLYMVLHARVVMDICEQHEQ- 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~g----ll~~~~~~rvvLdv~e~~~r- 418 (732)
..+.+...|++|+++||++|.|.+++++|.+++.+++++++.+....+++..... +...-+.......-......
T Consensus 81 ~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~ 160 (240)
T cd08913 81 LSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDP 160 (240)
T ss_pred cEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCcc
Confidence 4677888999999999999999999999999999999998854332333321111 00011111110000000110
Q ss_pred -eEEEEEEe--------cCC--cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhH
Q 004764 419 -EISFEQVE--------GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDL 475 (732)
Q Consensus 419 -rIsf~~ve--------Gdf--k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l 475 (732)
.|..+++. |-. ..+.|.|.|.|.++|.|.|+|....+| +.+|.++++.++.+..
T Consensus 161 yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP---G~LP~~~~N~~~~~~p 225 (240)
T cd08913 161 YVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP---GVLPYISTDIAGLSSE 225 (240)
T ss_pred EEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC---ccccHHHhhhhhhccc
Confidence 13333333 111 156899999999989999999888876 3789989888876554
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of |
| >cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.8e-05 Score=70.10 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=81.7
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V-----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
+..++.|+||+++||++++|-+.+..|+... ..++.--+.||..++.....++-....+...+ +++ .++++|
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~-~ei--~p~~~l 78 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTY-TEV--EPHKLI 78 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEE-EEE--CCCCEE
Confidence 5677899999999999999999999997542 22333234566655544333332111223332 222 467899
Q ss_pred EEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 421 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 421 sf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.|+... .....|+|++.+ ++|+|+.. +.+ .+. ........+-...|..|++++|+
T Consensus 79 ~~~~~~----~~~v~~~l~~~~-~gT~l~l~--~~~-----~~~-~~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 79 EYTMED----GREVEVEFTEEG-DGTKVVET--FDA-----ENE-NPVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEcCC----CCEEEEEEEECC-CCEEEEEE--ECC-----CCC-CcHHHHHHHHHHHHHHHHHHhhC
Confidence 998543 246789999976 55999876 322 111 13345667888999999998873
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.6e-05 Score=76.15 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=92.6
Q ss_pred eeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEeccceeEEEEE
Q 004764 327 EVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCKGLLYMVLH 405 (732)
Q Consensus 327 Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~gll~~~~~ 405 (732)
|+++.+.++ +...+.+++++.|+|++++|++.+.|. ++.|.+++.++++++..+.... +++... ...+..-.
T Consensus 39 el~~~k~~~----gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~-~PwP~~~R 111 (204)
T cd08908 39 ELSYKKVSE----GPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQN-SMAPHPAR 111 (204)
T ss_pred EEEEeccCC----CCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEcc-CCCCCCCc
Confidence 667776542 444478999999999999999999888 8999999999999988653322 222210 00000000
Q ss_pred EEEEEEEEe--eCCCe--EEEEEEecC--------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHh
Q 004764 406 ARVVMDICE--QHEQE--ISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYE 473 (732)
Q Consensus 406 ~rvvLdv~e--~~~rr--Isf~~veGd--------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~ 473 (732)
.-++++... ..... |....+..+ ...+.|.|.|+|.++|+|+|+|...++|+ +.+|.++++ .+..
T Consensus 112 D~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg--G~iP~W~~N-~~g~ 188 (204)
T cd08908 112 DYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR--GHMPEWYTK-SFGH 188 (204)
T ss_pred EEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC--CCCcHHHHh-hHHH
Confidence 111110110 11121 222211100 12568999999999899999999999996 458876554 4566
Q ss_pred hHHHHHHHHHH
Q 004764 474 DLPSNLCAIRD 484 (732)
Q Consensus 474 ~l~~~L~ALK~ 484 (732)
-+...|..||+
T Consensus 189 ~~~~~~~~~r~ 199 (204)
T cd08908 189 LCAAEVVKIRD 199 (204)
T ss_pred HHHHHHHHHHh
Confidence 66666666665
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear. |
| >cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-05 Score=78.99 Aligned_cols=145 Identities=11% Similarity=0.114 Sum_probs=96.9
Q ss_pred EEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEec-------cceeEE-EEEE--------
Q 004764 345 CVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGC-------KGLLYM-VLHA-------- 406 (732)
Q Consensus 345 ~V~asI~I~-APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~-------~gll~~-~~~~-------- 406 (732)
.+.+...|+ ++++++++++.|.+.+++|...+.+.+++++.+... .+++... ..+++. .+..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~ 132 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPN 132 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccccc
Confidence 588999999 999999999999999999999999999998864332 2233210 111111 1100
Q ss_pred ----EEEEEEE-ee---CC--CeEEEEEEe-----cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHH
Q 004764 407 ----RVVMDIC-EQ---HE--QEISFEQVE-----GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVI 471 (732)
Q Consensus 407 ----rvvLdv~-e~---~~--rrIsf~~ve-----Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~l 471 (732)
.+++... .. |+ .-+...... +.+..-.|.|.+.+ ++++|.++|...++|+ +++|.++++.+.
T Consensus 133 ~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPg--G~iP~wvvn~~~ 209 (235)
T cd08872 133 AHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPG--GWAPASVLRAVY 209 (235)
T ss_pred CCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCC--CCccHHHHHHHH
Confidence 0100000 00 11 222222211 11112237798988 5778999999999985 689999999999
Q ss_pred HhhHHHHHHHHHHHHHhhhCC
Q 004764 472 YEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 472 r~~l~~~L~ALK~rAE~~~~~ 492 (732)
++..+..|+.|-.++......
T Consensus 210 k~~~P~~l~~~~~~~~~~~~~ 230 (235)
T cd08872 210 KREYPKFLKRFTSYVQEKTKG 230 (235)
T ss_pred HhhchHHHHHHHHHHHHhcCC
Confidence 999999999999999876544
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg |
| >cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00028 Score=67.41 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=83.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+.-++.|+||+++||++++|-+.+.+|++. +..+++--+.|+..++...+..|.. +....++ +++ .++++|.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v-~~i--~p~~~l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEE-FPNPGCF-LEV--VPGERLV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCE-ecceEEE-EEE--eCCCEEE
Confidence 456778999999999999999999999873 3334444456666665544444432 2222331 222 4778999
Q ss_pred EEEEec-CC---c--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 422 FEQVEG-DF---D--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 422 f~~veG-df---k--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|...-. .. . ...-.|+|++.+ ++|+|+.+..+.. ....+.....-+...-...|..|++++|.
T Consensus 78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~---~~~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 78 FTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWT---EADRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCC---HHHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 984321 11 1 145689999976 4599988643321 00111222233467888999999988763
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.4e-05 Score=77.74 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=74.2
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEE-EEEEecc--ceeEEEEEEEEEEEEEeeCC--C
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVR-ILQEGCK--GLLYMVLHARVVMDICEQHE--Q 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~--gll~~~~~~rvvLdv~e~~~--r 418 (732)
..+.+...|++|+++||++|.|.+++++|.+++.+++++++.++... +.++... .+...-+.......-..+.. -
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~ 156 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPY 156 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeE
Confidence 56888888999999999999999999999999999999987654332 3332111 00001111111000000111 1
Q ss_pred eEEEEEEe--------cCC--cceeEEEEEEEcCCCeEEEEEEEEEEe
Q 004764 419 EISFEQVE--------GDF--DSFQGKWLFEQLGSHHTLLKYSVESKM 456 (732)
Q Consensus 419 rIsf~~ve--------Gdf--k~f~G~W~Lep~gdG~TrVty~v~~ep 456 (732)
.|.++.+. |-+ ..+.|.|.|.|.++|+|.|+|...++|
T Consensus 157 ~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dP 204 (235)
T cd08873 157 KVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNP 204 (235)
T ss_pred EEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCC
Confidence 34555554 111 267899999999989999999999998
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an |
| >cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00022 Score=72.55 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=94.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhc--cCcccccCcCCcEEEEEEeeCCEEE-EEEEecc---ceeEEEEEEEEEEEEE-eeC
Q 004764 344 RCVVASITVKAPVSEVWNVMTA--YETLPEIVPNLAISKILSRENNKVR-ILQEGCK---GLLYMVLHARVVMDIC-EQH 416 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtD--yE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~---gll~~~~~~rvvLdv~-e~~ 416 (732)
..+.++..|++++++|+++|.| .+..+.|.+.+.+++++++.+.... +...... +++ .-..-+.++.. ...
T Consensus 46 ~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~v--s~RDfV~~~~~~~~~ 123 (206)
T cd08867 46 HLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLI--SPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCcc--CCcceEEEEEEEEeC
Confidence 4588999999999999999999 8999999999999999988654332 2221100 111 00000101110 011
Q ss_pred CC--eEEEEEEe--------cCCc--ceeEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 004764 417 EQ--EISFEQVE--------GDFD--SFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI 482 (732)
Q Consensus 417 ~r--rIsf~~ve--------Gdfk--~f~G~W~Lep~g--dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~AL 482 (732)
+. .+....++ |-++ ...|-|.++|.+ ++.|.++|-+.++|+ +.+|.++++.++...+...+.+|
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~l 201 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLR--GMIPQSLVESAMPSNLVNFYTDL 201 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccC--CCCcHHHHHhhhhhhHHHHHHHH
Confidence 21 23334442 2222 346889999864 467999999999996 67999999999999999999999
Q ss_pred HHHH
Q 004764 483 RDYV 486 (732)
Q Consensus 483 K~rA 486 (732)
|+++
T Consensus 202 r~~~ 205 (206)
T cd08867 202 VKGV 205 (206)
T ss_pred HHhc
Confidence 9875
|
This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression |
| >cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.7e-05 Score=77.28 Aligned_cols=139 Identities=9% Similarity=-0.054 Sum_probs=90.7
Q ss_pred EEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEEeeC-CEEEEEEEecccee--EEEEEEEEEEEEEee-CCC
Q 004764 344 RCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN-NKVRILQEGCKGLL--YMVLHARVVMDICEQ-HEQ 418 (732)
Q Consensus 344 ~~V~asI~I~-APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~-g~~rv~q~g~~gll--~~~~~~rvvLdv~e~-~~r 418 (732)
..+.+...++ ++++.+++++.|.+.+++|.+.|.++ ++... +...+++....... ..-+..... ..... ..+
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~--~~~~~~~~~i~y~~~k~PwPvs~RD~V~~r~-~~~~~~~~~ 125 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKEL--YEKECDGETVIYWEVKYPFPLSNRDYVYIRQ-RRDLDVEGR 125 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh--eeecCCCCEEEEEEEEcCCCCCCceEEEEEE-eccccCCCC
Confidence 5688888898 69999999999999999999999874 43332 22212221110000 000100000 00001 111
Q ss_pred eE---EEEEE--------ecCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 419 EI---SFEQV--------EGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 rI---sf~~v--------eGdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
.+ ..+.+ +|-++ .+.|.|.|++.++++|.++|....+|. +.+|.++++.+..+.+...|+.|++.
T Consensus 126 ~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg--G~IP~wlvN~~~~~~~~~~l~~l~ka 203 (207)
T cd08910 126 KIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG--GMIPSWLINWAAKNGVPNFLKDMQKA 203 (207)
T ss_pred eEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC--CcchHHHHHHHHHHhhHHHHHHHHHH
Confidence 11 11111 12222 678999999988888999999999985 67999999999999999999999998
Q ss_pred HH
Q 004764 486 VE 487 (732)
Q Consensus 486 AE 487 (732)
+.
T Consensus 204 ~~ 205 (207)
T cd08910 204 CQ 205 (207)
T ss_pred Hh
Confidence 74
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function. |
| >COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=69.31 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=83.9
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEE---EEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWL---EQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv---~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
++++++.|+||+++||+.|+|.|.+.+-+|.+.+.+.. ++ .... ..+| .+.-++..+ +...+.. .+
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~---g~-e~~~~v~l~ig---~l~~~~~g~--~~~~~v~--~~ 70 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN---GD-EYTAKVKLKIG---PLKGTFSGR--VRFVNVD--EP 70 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec---CC-eEEEEEEEeec---ceeEEEEEE--EEEcccc--CC
Confidence 46889999999999999999999999999999988663 22 3211 1232 233333333 2222322 34
Q ss_pred CceEEEEEEcc---ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHh----CHHHHHHHHHH
Q 004764 172 DRELYFSMVDG---DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRS----DLPVNLQALAC 238 (732)
Q Consensus 172 ~rrI~F~~veG---Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~----~L~~~L~ALk~ 238 (732)
++.++++---| -|..+...-.|++. +.+|+|+|.+.++-...+ ..+..+.++. .+.+.+++|+.
T Consensus 71 ~~~~~i~g~G~~~~g~~~~~~~v~l~~~--g~gt~v~w~~~~~~gg~l-aqlGsr~i~~~~~kli~~~~~~l~~ 141 (146)
T COG3427 71 PRSITINGSGGGAAGFADGTVDVQLEPS--GEGTRVNWFADANVGGKL-AQLGSRLIDSVARKLINRFFDCLSS 141 (146)
T ss_pred CcEEEEEeecccccceeeeeeEEEEEEc--CCCcEEEEEEEccccHHH-HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777765542 47777888889885 466999999999755443 3444444444 44444444444
|
|
| >PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0008 Score=65.85 Aligned_cols=135 Identities=16% Similarity=0.351 Sum_probs=92.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHh-ccCcccccCcCC-cEEEEEEeeCC---EEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMT-AYETLPEIVPNL-AISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLt-DyE~yPef~P~V-~ssrVLer~~g---~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.+++|++.+|+++. .-..+|..+|++ +++++++.+++ .++.+.-+..+- ......+ ++.......
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~-~~~~Kek--ve~~D~~~~ 80 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGP-FKYVKEK--VEAIDEENK 80 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSS-EEEEEEE--EEEEETTTT
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCC-cceeEEE--EEeecCCCc
Confidence 468889999999999999999 556688899885 66789887643 555555444442 2223333 344445568
Q ss_pred eEEEEEEecCCc----ceeEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 419 EISFEQVEGDFD----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 419 rIsf~~veGdfk----~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~-Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
.+.|..++|++- .|...-.+.|.++|+|.+++.+.+++.++.. .|...+.. +..+++++.++.
T Consensus 81 ~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayL 148 (151)
T PF00407_consen 81 TITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYL 148 (151)
T ss_dssp EEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred EEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHH
Confidence 999999998743 5555556667788889999999999876332 45444433 566666666654
|
A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D .... |
| >cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=74.57 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=75.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccc---eeEEEEEEEEEEEEEeeCCC-e
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG---LLYMVLHARVVMDICEQHEQ-E 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~g---ll~~~~~~rvvLdv~e~~~r-r 419 (732)
..+.+++.+++|+++++++|.|++++++|.+++.++++++..+..-.+++..... +...-+........ ..+.. .
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~-~~~dg~~ 156 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRK-PLKDGNT 156 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEe-cCCCCCE
Confidence 5788899999999999999999999999999999999998754322233321111 00001111111000 01112 1
Q ss_pred --EEEEEEec--------CCc--c-eeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH
Q 004764 420 --ISFEQVEG--------DFD--S-FQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI 466 (732)
Q Consensus 420 --Isf~~veG--------dfk--~-f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~l 466 (732)
|..+.+.. -.+ . ++|. .|.|+++++|.|+|...++| +.+|-+.
T Consensus 157 ~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP---g~lp~~~ 212 (236)
T cd08914 157 YVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA---SILPYFA 212 (236)
T ss_pred EEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC---ccchheE
Confidence 23333322 111 3 6788 99999989999999999998 4576544
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation. |
| >cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0009 Score=63.93 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=80.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCc-EEEE--EE-eeCCEEEEEEEecc-------ceeEEEEEEEEEEEEEe
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA-ISKI--LS-RENNKVRILQEGCK-------GLLYMVLHARVVMDICE 414 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~-ssrV--Le-r~~g~~rv~q~g~~-------gll~~~~~~rvvLdv~e 414 (732)
+..+..|+||++.||++++|.+.+..|++.-. .+.+ .+ +.++..++...... +.. ..+..+ ++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~-~~~~g~-v~~v-- 77 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNT-DVFGGR-FLEL-- 77 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcE-eeeEEE-EEEE--
Confidence 45677899999999999999999999997432 1222 22 23454454333222 111 122222 1122
Q ss_pred eCCCeEEEEEEe--cCCc-ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 415 QHEQEISFEQVE--GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 415 ~~~rrIsf~~ve--Gdfk-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.++++|+|...- +... ...-.|.|++.+ ++|+|++....- +...........-..+|..|++++|
T Consensus 78 ~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~-------~~~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGI-------PDGIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCC-------CchhhhhHHHHHHHHHHHHHHHHhc
Confidence 467899998542 1122 336788999887 559999887532 1222345677788888999988876
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00033 Score=65.61 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=79.8
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+|+.++.|+||++.||+++||.++|++|++... ... ....+....+...+... ......+.+.- .+++
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~-~~~~~~~g~~~~~~~~~-------~~~~~~i~~~~---p~~~ 69 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPF-VVGEGATGEITYPGYEH-------GVFPVTVVEVD---PPRR 69 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCc-ccCCcceeEEecCCCCc-------cceEEEEEEeC---CCcE
Confidence 588999999999999999999999999999853 111 11111111111111100 01112223332 4678
Q ss_pred EEEEEEccc---------cceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 175 LYFSMVDGD---------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 175 I~F~~veGD---------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
|.|+...+. -....-.|+|++. +++|+|+++-.--+... .... ........-...|..|++.+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~gT~vt~~~~~~~~~~~~~~~~-~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 70 FSFRWHPPAIDPGEDYSAEPSTLVEFTLEPI--AGGTLLTVTESGFDALPAERRAE-AYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EEEEecCCCcccccccCCCCceEEEEEEEec--CCcEEEEEEEcCCCCCChHHHHH-HHHhhhhhHHHHHHHHHHHhc
Confidence 888865332 1234578999985 47799999876322221 1111 234577888889999998876
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=66.46 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=98.8
Q ss_pred eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEee-CCEE-EEEE-Eecc--ceeEEEEEEEEEEEEEee-
Q 004764 342 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKV-RILQ-EGCK--GLLYMVLHARVVMDICEQ- 415 (732)
Q Consensus 342 ~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~-~g~~-rv~q-~g~~--gll~~~~~~rvvLdv~e~- 415 (732)
....+.+...|+++++.++..+.|-.. +|.+.+.++++++.- ++.. .... .... .+...-|. .++....
T Consensus 44 ~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv---~~~~~~~~ 118 (206)
T PF01852_consen 44 PIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFV---FLRSWRKD 118 (206)
T ss_dssp SCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEE---EEEEEEEC
T ss_pred cceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEE---EEEEEEEe
Confidence 346789999999999977777777666 999999999999884 4432 2211 1111 12111111 1122222
Q ss_pred CCC--eEEEEEEec---C------Cc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 004764 416 HEQ--EISFEQVEG---D------FD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI 482 (732)
Q Consensus 416 ~~r--rIsf~~veG---d------fk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~AL 482 (732)
.+. -|.++.++. + .+ .+.+.|.|++.+++.|.|+|....+|. +++|.++++.++.......++.+
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~--G~iP~~~~n~~~~~~~~~~~~~~ 196 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPK--GWIPSWLVNMVVKSQPPNFLKNL 196 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESS--SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCC--CCChHHHHHHHHHHhHHHHHHHH
Confidence 333 355555541 1 12 456899999999999999999999985 67999999999999999999999
Q ss_pred HHHHHhh
Q 004764 483 RDYVEKR 489 (732)
Q Consensus 483 K~rAE~~ 489 (732)
++++++.
T Consensus 197 ~~~~~~~ 203 (206)
T PF01852_consen 197 RKALKKQ 203 (206)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988763
|
StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B .... |
| >cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=68.18 Aligned_cols=152 Identities=11% Similarity=-0.046 Sum_probs=96.1
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeee----E
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRA----L 151 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~i----l 151 (732)
++.++++...+..++ .+-+++++.|+++++.|...+.+ ..++|..++.++++++.-+++.-..+.+...-. -
T Consensus 34 ~~~~~e~~ykK~~d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~R 111 (205)
T cd08909 34 SSDNTELAYKKVGDGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSR 111 (205)
T ss_pred CcCCeEEEEecCCCCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCC
Confidence 456788888886665 46799999999999999888877 479999999999999986654322221211000 0
Q ss_pred EEEEEEEEEEEEEEeecCCCCceEEEEEEccc---------cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH
Q 004764 152 YWHIEARVVLDLQELIHSASDRELYFSMVDGD---------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE 222 (732)
Q Consensus 152 ~~~~~arvvLdv~E~~~~~~~rrI~F~~veGD---------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~ 222 (732)
-|+.......+ .+ ...-.|.++-++.. ...+.|.|.++|.+ .++|+|+|-..++|++++|.|+.+
T Consensus 112 D~v~~R~w~~~---~~--~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~-~g~trvt~i~~vDpkG~~P~W~~n 185 (205)
T cd08909 112 DFVVLRSWRTD---LP--KGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCG-SGKSRLTHICRVDLKGHSPEWYNK 185 (205)
T ss_pred EEEEEEEEEEe---CC--CCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECC-CCCEEEEEEEEecCCCCChHHHHH
Confidence 01000000000 00 00111222222211 13456899999986 468999999999999999999876
Q ss_pred HHHHhCHHHHHHHHHH
Q 004764 223 RIIRSDLPVNLQALAC 238 (732)
Q Consensus 223 ~~ir~~L~~~L~ALk~ 238 (732)
. .-..+...|..||.
T Consensus 186 ~-~g~~~~~~~~~~r~ 200 (205)
T cd08909 186 G-FGHLCAAEAARIRN 200 (205)
T ss_pred h-HHHHHHHHHHHHHh
Confidence 4 34555666666665
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear. |
| >cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0015 Score=67.07 Aligned_cols=159 Identities=10% Similarity=0.016 Sum_probs=107.6
Q ss_pred cCCceEEEEEEe-cCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVV-SWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v-~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
...++.|+.+.. .....-.+++..|+++++.||+.|-|-+...+|-+++.+.++|+.-+++....+.+......++ +.
T Consensus 29 ~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~-vs 107 (204)
T cd08904 29 TSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGS-IS 107 (204)
T ss_pred cCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCc-cc
Confidence 447889888864 4556679999999999999999999999999999999999999986666544443322211111 11
Q ss_pred EEEEEEEEE--eecCCCCceEEEEEEcc-------c-c--ceeeEEEEEEecCCC-CeeEEEEEEEEecCCCccHHHHHH
Q 004764 157 ARVVLDLQE--LIHSASDRELYFSMVDG-------D-F--KKFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLER 223 (732)
Q Consensus 157 arvvLdv~E--~~~~~~~rrI~F~~veG-------D-f--k~f~GsW~Lepl~~g-~gT~LtY~l~V~P~~piP~~Lv~~ 223 (732)
.|=.++++- ... ...--+....++- + + ...-|-|.+.|++.. +.|.|+|-+..+|++++|.++++.
T Consensus 108 pRDfV~vr~~~r~~-~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~ 186 (204)
T cd08904 108 PRDFVDLVHIKRYE-GNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEK 186 (204)
T ss_pred CceEEEEEEEEEeC-CCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHH
Confidence 121122211 110 0000111111110 1 1 223367999998633 479999999999999999999999
Q ss_pred HHHhCHHHHHHHHHH
Q 004764 224 IIRSDLPVNLQALAC 238 (732)
Q Consensus 224 ~ir~~L~~~L~ALk~ 238 (732)
++.+.+-.-...|++
T Consensus 187 ~~~~~~~~f~~~~~~ 201 (204)
T cd08904 187 TMPTNLVNLILDAKD 201 (204)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999988888876
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis. |
| >cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00051 Score=65.02 Aligned_cols=130 Identities=17% Similarity=0.223 Sum_probs=81.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+..++.|+||++.||+.++|-+.+..|++.-...++ +.|+..+.......+ ....+ .+++ .++++|.|+-.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~--~~Gg~~~~~~~~~~~----~~~g~-~~~~--~p~~~l~~~w~ 72 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL--EEGKTVTWDWEMYGA----SVPVN-VLEI--EPNKRIVIEWG 72 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccc--cCCCEEEEEEEccCC----ceEEE-EEEE--cCCCEEEEEec
Confidence 578899999999999999999999998665333332 345544433322222 11222 1222 46789988764
Q ss_pred ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHH-HHHHHhhHHHHHHHHHHHHHh
Q 004764 426 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM-EEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 426 eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv-~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.+. ....-.|+|++.++|+|+|++....-+. .-.+.+. .......-..+|..|++++|.
T Consensus 73 ~~~-~~s~v~~~l~~~~~ggT~ltl~~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 73 DPG-EPTTVEWTFEELDDGRTFVTITESGFPG---TDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred CCC-CCEEEEEEEEECCCCcEEEEEEECCCCC---CcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 421 1346789999987577999988542221 1111111 112357788999999999885
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0021 Score=61.36 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=84.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+..+..++||+++||+.++|-+.+..|+..- ..+++--+.||..++.....+|.. ......+ +++ .++++|+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~~-~ei--~p~~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGVY-HEV--TPPERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEEE-EEE--cCCCEEE
Confidence 4556789999999999999999999999753 223333345666555443333322 1222321 122 4678898
Q ss_pred EEEEecC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 422 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 422 f~~veGd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
|.-.-.. -....-.|+|++.+ |+|+|+.+..+.. .-.........+..+-...|..|+++++
T Consensus 78 ~t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 78 QTEEFEGLPDGVALETVTFTELG-GRTRLTATSRYPS---KEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEeEecCCCCCceEEEEEEEECC-CCEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8754321 22446688999976 5699998866531 1011224566677888888888888764
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00091 Score=60.96 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecC---C
Q 004764 353 KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGD---F 429 (732)
Q Consensus 353 ~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGd---f 429 (732)
+||+++||++++|.+.+..|.+ +....+--+.|+..++ .. .++-. ..+..++ +++ .++++|.|+...++ .
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~~~Gg~~~~-~~-~~g~~-~~~~~~v-~~~--~p~~~i~~~~~~~~~~~~ 73 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDFRPGGSFRF-MD-PDGGE-FGFDGTV-LEV--EPPERIVFTWRMPDDPDG 73 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEEECSTTEEEEE-EE-TTSEE-EEEEEEE-EEE--ETTTEEEEEEEEETSSSC
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcceeeeecCCEEEE-Ee-cCCCC-ceeeEEE-EEE--eCCEEEEEEEEccCCCCC
Confidence 6999999999999999999911 1222222234554455 22 44422 3333332 222 47789999955432 2
Q ss_pred cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 430 DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 430 k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
....-.|+|++ .+++|+|++...--+ ........+......+|..|++++|
T Consensus 74 ~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 74 PESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36678889999 567799999874322 1222222288888999999998876
|
This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D .... |
| >cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0016 Score=61.88 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=79.9
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcC-----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 347 VASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 347 ~asI~I~APpE~VW~vLtDyE~yPef~P~-----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
.-+..|+||+++||++++|-+.+..|+.. +..+++--+.++..+......+|.. ...... ++++ .++++|.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g~-~~~~--~p~~~l~ 78 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEAR-YHDI--VPDERIV 78 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeEE-EEEe--cCCceEE
Confidence 44567999999999999999999999964 2334443345665555444334432 122222 1222 4678898
Q ss_pred EEEEe--cC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 422 FEQVE--GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 422 f~~ve--Gd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|.-.. ++ .....-.++|++.+ |+|+|++....-...+ .. .......+-..+|..|++++++
T Consensus 79 ~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~---~~--~~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 79 YTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFLDG---DD--DPAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecccc---cc--hhhhHHHHHHHHHHHHHHHHhC
Confidence 77532 11 11345678999876 4599998755321101 11 1234556777888888887763
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00092 Score=62.84 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=79.0
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccc-----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNL-----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v-----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
++.++.++||++.||+++||-+++.+|++.. ...+ .+.+.||+.+..-.+...-..+.+.. .++ +..
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~-~d~~~GG~~~~~~~~~~g~~~~~~~g-~~~---ei~--- 73 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAE-NDLRVGGKFSYRMEAKDGSMGFDFEG-TYT---EVE--- 73 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceee-ecCCcCCEEEEEEEcCCCCcccccce-EEE---EEC---
Confidence 6778999999999999999999999996542 2222 24446666544322111100111111 122 222
Q ss_pred CCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 171 SDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 171 ~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+...| ..-.|.|++. +++|+|+....-. +.. ........-...|..|++.+|+
T Consensus 74 p~~~l~~~~~~~----~~v~~~l~~~--~~gT~l~l~~~~~-----~~~-~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 74 PHKLIEYTMEDG----REVEVEFTEE--GDGTKVVETFDAE-----NEN-PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred CCCEEEEEcCCC----CEEEEEEEEC--CCCEEEEEEECCC-----CCC-cHHHHHHHHHHHHHHHHHHhhC
Confidence 478999987543 2468999995 4789998763322 221 3345667778889999887763
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=62.23 Aligned_cols=134 Identities=19% Similarity=0.144 Sum_probs=80.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC--------cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNL--------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V--------~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
|+.++.|+||++.||++++| .+..|++.- ..+.+--+.||...+ ...+|..+ . ..+ ++++ .++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g~~~-~-~g~-v~~v--~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDGTEC-E-WGT-VLAW--EPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCCcEe-c-eEE-EEEE--cCC
Confidence 67889999999999999999 477887531 333443344554432 22233321 1 222 1222 467
Q ss_pred CeEEEEEE-ecCCc-----ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 418 QEISFEQV-EGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 418 rrIsf~~v-eGdfk-----~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
++|+|.-. ...+. ...-.|+|++.++++|+|++....-.....-..+..........-..+|..|++++|+
T Consensus 73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 89988754 21111 3467899999874569998875532210000022344555677888899999998874
|
This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci |
| >KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0005 Score=69.98 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=103.7
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCe-eEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR-IWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggr-irv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
.+..-.|..+++.+|+|+.|.+.|.+|+|-+++|.|++.+.++. +--..+|+-.. --.+++.++.+ + +.-
T Consensus 70 Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l-~E~y~S~Vt~~----~----p~l 140 (227)
T KOG3177|consen 70 YSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPL-DERYTSNVTCV----K----PHL 140 (227)
T ss_pred HHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCccc-chhheeeeEEe----c----ccc
Confidence 34445688999999999999999999999999999998753332 21123654322 22233333332 1 223
Q ss_pred EEEEEEccc-cceeeEEEEEEecC-CCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 175 LYFSMVDGD-FKKFEGKWSIKSGT-RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 175 I~F~~veGD-fk~f~GsW~Lepl~-~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
+--...+|. |....-.|++.|.. -.+.+.|.|.+.++.+-.+-..+..-+.+.-...+..|.-+||...+
T Consensus 141 ~kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~ 212 (227)
T KOG3177|consen 141 TKTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKLY 212 (227)
T ss_pred eEEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344555 78888999999975 13678999999999999999999999999999999999999999864
|
|
| >cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0024 Score=60.48 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=78.8
Q ss_pred EEEEEEEecCHHHHHHHHhCcccccccccc----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPN----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+..+..|+||++.||+++||-+++.+|+++ +.... ++...||+.++.-.+.... .+... -.+.+.. +
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~-~d~~~GG~~~~~~~~~~g~-~~~~~----g~v~e~~---p 72 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHE-FDLRPGGRWRFVMHGPDGT-DYPNR----IVFLEIE---P 72 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEE-EEecCCCEEEEEEECCCCC-Eecce----EEEEEEc---C
Confidence 567889999999999999999999999852 22222 2334566543322221111 11111 1223332 4
Q ss_pred CceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH---HHHHHHhCHHHHHHHHHHHHHh
Q 004764 172 DRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 172 ~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L---v~~~ir~~L~~~L~ALk~raEr 242 (732)
+++|.|+...++. ...=.|.|++. +++|+|+++-.. .-+... +...+.......|..|++.++|
T Consensus 73 ~~~l~~t~~~~~~-~~~v~~~~~~~--~~gT~ltl~~~~----~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 73 PERIVYDHGSGPP-RFRLTVTFEEQ--GGKTRLTWRQVF----PTAAERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred CCEEEEEeccCCC-cEEEEEEEEEC--CCCEEEEEEEEc----CCHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 6889998754421 23457888885 478999888643 222221 2344566677888888887764
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0039 Score=59.73 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=80.1
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccce-------EEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLA-------CSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~-------~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
|+.++.|+||++.||+++|| .+.+|++.-. ....++.+.||+... ..+.... ++ . ..++ +..
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~-~~~~g~~-~~--~-g~v~---~v~- 70 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE-IGEDGTE-CE--W-GTVL---AWE- 70 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE-ecCCCcE-ec--e-EEEE---EEc-
Confidence 78899999999999999999 5888876421 222334455666532 2111111 11 1 1222 222
Q ss_pred CCCCceEEEEEE-ccccc-----eeeEEEEEEecCCCCeeEEEEEEEEecCCCc--cHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 169 SASDRELYFSMV-DGDFK-----KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF--PAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 169 ~~~~rrI~F~~v-eGDfk-----~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi--P~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
++++|.|+-. ..++. ...=+|.|++.+ .++|+|+..-.--+...- +...........-...|..|++.+
T Consensus 71 --p~~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~-~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 71 --PPSRLVFTWQINADWRPDPDKASEVEVRFEAVG-AEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred --CCCEEEEEeccCCCcCcCCCCceEEEEEEEECC-CCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 4688888765 22221 345689999852 168998877665332211 223445566778888999999887
Q ss_pred Hh
Q 004764 241 ER 242 (732)
Q Consensus 241 Er 242 (732)
|+
T Consensus 148 ~~ 149 (149)
T cd08891 148 EK 149 (149)
T ss_pred cC
Confidence 64
|
This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci |
| >cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0035 Score=64.49 Aligned_cols=135 Identities=16% Similarity=0.073 Sum_probs=86.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC-EEEEEEEeccceeEEEEEEEEEEEEEe--eCCC--
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN-KVRILQEGCKGLLYMVLHARVVMDICE--QHEQ-- 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g-~~rv~q~g~~gll~~~~~~rvvLdv~e--~~~r-- 418 (732)
+.+.+++.|++|+++|...+.+ ..++|..++.+.++++.-++ .-...... .+..+..-..-++++... .+..
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~-~~~~P~~~RD~v~~R~w~~~~~~G~~ 128 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVL-NCMAPHPSRDFVVLRSWRTDLPKGAC 128 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEe-ecCCCCCCCEEEEEEEEEEeCCCCcE
Confidence 6688999999999999888877 69999999999999988654 22222221 111100000111111110 1122
Q ss_pred eEEEEEEecC-------Cc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 419 EISFEQVEGD-------FD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 419 rIsf~~veGd-------fk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
.|....++.+ ++ .+.|.|.++|.++|+|+|+|-..++|+ +.+|. .+.+.+..-+.+.|..||+
T Consensus 129 vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpk--G~~P~-W~~n~~g~~~~~~~~~~r~ 200 (205)
T cd08909 129 SLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLK--GHSPE-WYNKGFGHLCAAEAARIRN 200 (205)
T ss_pred EEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCC--CCChH-HHHHhHHHHHHHHHHHHHh
Confidence 2344443321 11 457889999999899999999999996 56886 4556677777777777775
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear. |
| >PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0068 Score=55.18 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=76.1
Q ss_pred ecCHHHHHHHHhCcccccccc-ccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEEEEEEc
Q 004764 103 NADVDSVWNALTDYERLADFV-PNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVD 181 (732)
Q Consensus 103 ~AP~e~Vw~VLTDYErlpeFi-P~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~F~~ve 181 (732)
+||++.||+++||-+++.+|. ...... ....||+.+. +........+ ... +.+.. .+++|.|+..-
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~---~~~~Gg~~~~-~~~~g~~~~~--~~~----v~~~~---p~~~i~~~~~~ 67 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEM---DFRPGGSFRF-MDPDGGEFGF--DGT----VLEVE---PPERIVFTWRM 67 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEE---ECSTTEEEEE-EETTSEEEEE--EEE----EEEEE---TTTEEEEEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCccee---eeecCCEEEE-EecCCCCcee--eEE----EEEEe---CCEEEEEEEEc
Confidence 599999999999999999992 222222 3345666655 2222222222 211 33443 36889988664
Q ss_pred cc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 182 GD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 182 GD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++ .....-.|.|++. +++|+|++.....+ +.......+...-..+|..|++.+|
T Consensus 68 ~~~~~~~~~~v~~~~~~~--~~~T~l~~~~~~~~----~~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 68 PDDPDGPESRVTFEFEEE--GGGTRLTLTHSGFP----DDDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp ETSSSCEEEEEEEEEEEE--TTEEEEEEEEEEEH----SHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEEEEEEc--CCcEEEEEEEEcCC----ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 43 4577788999993 58899998884422 1222222277888888888888775
|
This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D .... |
| >cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0051 Score=58.20 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=78.8
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
++.++.|+||++.||+++||-+++.+|.+.-...+ ...||+++..-..... ...-.+.+.. ++++|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~---~~~Gg~~~~~~~~~~~--------~~~g~~~~~~---p~~~l 67 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGR---LEEGKTVTWDWEMYGA--------SVPVNVLEIE---PNKRI 67 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCcc---ccCCCEEEEEEEccCC--------ceEEEEEEEc---CCCEE
Confidence 67899999999999999999999999865533222 2234543211111110 1112223332 46889
Q ss_pred EEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH-HHHHHhCHHHHHHHHHHHHHhh
Q 004764 176 YFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL-ERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 176 ~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv-~~~ir~~L~~~L~ALk~raEr~ 243 (732)
.|+...++ -...=.|.|++.+ +++|+|++.-.--|. ..+..+. .......-...|..|+..+|..
T Consensus 68 ~~~w~~~~-~~s~v~~~l~~~~-~ggT~ltl~~~~~~~-~~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 68 VIEWGDPG-EPTTVEWTFEELD-DGRTFVTITESGFPG-TDDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred EEEecCCC-CCEEEEEEEEECC-CCcEEEEEEECCCCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 88765432 1233589999853 378999988543221 1111121 1224578888999999988863
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0092 Score=56.99 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=76.8
Q ss_pred EEEEEEEecCHHHHHHHHhCcccccccccc----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPN----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+..+..|+||++.||+++||-+.+.+|++. +..+.. +...||+.++.-.+.... .+... -.+.+.. +
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~-d~~~GG~~~~~~~~~~g~-~~~~~----g~v~~i~---p 72 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL-DLRPGGAFRTVMRGPDGE-EFPNP----GCFLEVV---P 72 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE-EeecCcEEEEEEECCCCC-Eecce----EEEEEEe---C
Confidence 567789999999999999999999999874 222322 334566654432221111 11111 1122322 3
Q ss_pred CceEEEEEEcc---cc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH---HHHHHHhCHHHHHHHHHHHHH
Q 004764 172 DRELYFSMVDG---DF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 172 ~rrI~F~~veG---Df---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L---v~~~ir~~L~~~L~ALk~raE 241 (732)
+++|.|+..-+ +. ....-.|.|++. +++|+|+.+... +-+... ....+...-...|..|++.++
T Consensus 73 ~~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~--~~gT~Ltl~~~~----~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 73 GERLVFTDALTPGWRPAEKPFMTAIITFEDE--GGGTRYTARARH----WTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred CCEEEEEEeecCCcCCCCCCcEEEEEEEEec--CCcEEEEEEEEe----CCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 68888875321 11 113457999985 478999876332 122211 122235667888888888765
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.019 Score=54.75 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=80.0
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccce---EEEEEecCCCCeeEEEEEeee------eeEEEEEEEEEEEEEEEe
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLA---CSGRIPCPYPGRIWLEQRGLQ------RALYWHIEARVVLDLQEL 166 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~---~SeVLe~~~ggrirv~Qvg~~------~il~~~~~arvvLdv~E~ 166 (732)
|+.+..|+||++.||+++||-+++.+|++.-. .+..++...||...+...... .-..+.+ ...+.+.
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~----~g~v~~v 77 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVF----GGRFLEL 77 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeee----EEEEEEE
Confidence 56778899999999999999999999987432 122234345665443322110 0000111 1123333
Q ss_pred ecCCCCceEEEEEE--ccccc-eeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 167 IHSASDRELYFSMV--DGDFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 167 ~~~~~~rrI~F~~v--eGDfk-~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
. .+++|.|+.. ++... ...=.|.|++. +++|+|++.....| ...........-...|..|++.+|
T Consensus 78 ~---p~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~T~lt~~~~~~~-----~~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 V---PNERIVYTDVFDDPSLSGEMTMTWTLSPV--SGGTDVTIVQSGIP-----DGIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred c---CCCEEEEEEEecCCCCCceEEEEEEEEec--CCCEEEEEEEeCCC-----chhhhhHHHHHHHHHHHHHHHHhc
Confidence 2 3688888754 22222 23567888885 47899998887433 223345667777778888887665
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.01 Score=60.99 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=103.4
Q ss_pred cccccccccccCCCccccceeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC-
Q 004764 308 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN- 386 (732)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~- 386 (732)
++|.+.-+.- -..|+.+...+ ..+ .-+..+.+|++++++||+++.|.+...+|.+.|.+.+++++-+
T Consensus 22 ~gWk~~k~~~-------~~~v~~k~~~~---~~g--kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~ 89 (204)
T cd08904 22 SGWKVVKTSK-------KITVSWKPSRK---YHG--NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDS 89 (204)
T ss_pred cCCeEEecCC-------ceEEEEEEcCC---CCc--eEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCC
Confidence 5677664431 12456654322 233 5588889999999999999999999999999999999999854
Q ss_pred CEEEEEEEecc---ceeE-EEEEEEEEEEEEe-eCCCe--EEEEEEe--------cCCc--ceeEEEEEEEcCCC--eEE
Q 004764 387 NKVRILQEGCK---GLLY-MVLHARVVMDICE-QHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLGSH--HTL 447 (732)
Q Consensus 387 g~~rv~q~g~~---gll~-~~~~~rvvLdv~e-~~~rr--Isf~~ve--------Gdfk--~f~G~W~Lep~gdG--~Tr 447 (732)
+.......... +++. .-|.. ++... ..+.. +....++ |-++ ..-|-|.+.|++++ .|.
T Consensus 90 ~T~I~~~~~~~~~~~~vspRDfV~---vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~ 166 (204)
T cd08904 90 DTFICHTITQSFAMGSISPRDFVD---LVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSK 166 (204)
T ss_pred CcEEEEEecccccCCcccCceEEE---EEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceE
Confidence 33333322211 1110 01111 11111 11222 2223333 1122 23477899998653 699
Q ss_pred EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 448 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 448 Vty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
+++-+..+++ +++|..+++.++...+......|++.+
T Consensus 167 l~~~~~~Dlk--G~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 167 LVMFVQPELR--GNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEEEEEeCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9998888886 689999999999998888888887643
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis. |
| >PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.034 Score=54.47 Aligned_cols=135 Identities=15% Similarity=0.263 Sum_probs=84.3
Q ss_pred eeEEEEEEEecCHHHHHHHHhC-ccccccccccceEE-EEEecCC--CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALTD-YERLADFVPNLACS-GRIPCPY--PGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTD-YErlpeFiP~v~~S-eVLe~~~--ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..+..++.+++|++++|+++.+ -..+|..+|.+.++ ++++-++ +|.++.+.-+....... +. ..+ +..+
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~---~K--ekv-e~~D- 76 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKY---VK--EKV-EAID- 76 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEE---EE--EEE-EEEE-
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcce---eE--EEE-Eeec-
Confidence 4688999999999999999994 55578888777555 4555321 22555554433221111 11 111 2222
Q ss_pred CCCceEEEEEEccc----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC---ccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 170 ASDRELYFSMVDGD----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 170 ~~~rrI~F~~veGD----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p---iP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
...+.+.|++++|| ++.|...-.+.|.+ +++|.+.++++.++... .|...+.. +..+++++-+.+.
T Consensus 77 ~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~-~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayLl 149 (151)
T PF00407_consen 77 EENKTITYTVIEGDVLGDYKSFKSTIQKIPKG-DGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYLL 149 (151)
T ss_dssp TTTTEEEEEEEEETTGTTTEEEEEEEEEEEET-TSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeccccccEEEEEEEEEecCCC-CCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHHh
Confidence 46799999999998 46788777777654 45699999999888554 34444433 5556666655543
|
A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D .... |
| >COG3832 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=55.59 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=79.9
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..+.+|+||++.||+.++|-+.++.|+. -.-++.--+.++..++......+-. ..+...+ +++ .++++|+|.
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~~-~~~~~~~-~~v--~p~~rIv~t 82 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGPV-HSFEGEY-LEV--VPPERIVFT 82 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCCe-eecceEE-EEE--cCCcEEEEE
Confidence 5688899999999999999999999999998 3212222234444444444434422 2333332 233 367888877
Q ss_pred EEec----CCcceeEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 004764 424 QVEG----DFDSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 424 ~veG----dfk~f~G~W~Lep~gdG-~TrVty~v~~ep~~d~~Lp~~l--v~r~lr~~l~~~L~ALK~rAE 487 (732)
-... ++..-..+|+|.+..+| +|++....... .+++.- ....+...-..++..+++.++
T Consensus 83 w~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 83 WDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGGG-----FLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred eccCCCCCcccCceEEEEEEEecCCCcEEEEEEeecc-----ccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 5442 22245788999987665 34433332221 122222 222346777888888887765
|
|
| >cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.049 Score=56.01 Aligned_cols=157 Identities=15% Similarity=0.022 Sum_probs=104.7
Q ss_pred CCceEEEEEEe-cCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeE-EEEEeeeeeEEEEEE
Q 004764 79 QRKVHCEVEVV-SWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW-LEQRGLQRALYWHIE 156 (732)
Q Consensus 79 e~~v~v~v~~v-~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrir-v~Qvg~~~il~~~~~ 156 (732)
..++.|+.+.. .-+..-.+++..|+..++.||+.|.+-.+..+|-++++++++|+.-+.+... .+...... ..+ +.
T Consensus 31 ~~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~-~~i-IS 108 (202)
T cd08902 31 SKDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQL-LNI-IS 108 (202)
T ss_pred CCCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCC-cCc-cC
Confidence 37888888844 4444457777788899999999999999899999999999999876555432 23332221 110 11
Q ss_pred EEEEEEEEEeecCCCCceEEE-----------EEEccccceeeEEEEEEecCCC-CeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 ARVVLDLQELIHSASDRELYF-----------SMVDGDFKKFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 arvvLdv~E~~~~~~~rrI~F-----------~~veGDfk~f~GsW~Lepl~~g-~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
.|=..++.-.... .+..++- ..|.|. ..=+-|.+.|++.+ ..|.+++-+..++++++|..+++.+
T Consensus 109 pRDFVdv~~~~~~-~d~~~s~gvs~~~~~~ppg~VRge--n~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~ 185 (202)
T cd08902 109 PREFVDFSYTTQY-EDGLLSCGVSIEYEEARPNFVRGF--NHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTA 185 (202)
T ss_pred ccceEEEEEEEEe-CCCeEEEEeeecCCCCCCCeEeec--ccccEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHH
Confidence 1111121111000 1111111 112221 12256999998743 5689999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHH
Q 004764 225 IRSDLPVNLQALACRA 240 (732)
Q Consensus 225 ir~~L~~~L~ALk~ra 240 (732)
+-+.+-.-...||+++
T Consensus 186 ~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 186 MASTLVNFYSDLKKAL 201 (202)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999999864
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney. |
| >cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.055 Score=51.38 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=74.7
Q ss_pred EEEEEEEecCHHHHHHHHhCcccccccccc-----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPN-----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~-----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
++-+-.++||++.||+++||-+.+.+|+.. +..+. .+...||..+..-....... +... -.+.+..
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~-~d~~~Gg~~~~~~~~~~g~~-~~~~----g~~~~~~--- 72 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDE-FDFRVGGREVSRGGPKGGPE-ITVE----ARYHDIV--- 72 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeE-EecCCCCEEEEEEECCCCCE-Eeee----EEEEEec---
Confidence 345567999999999999999999999965 23332 23345665543322211111 1111 1222332
Q ss_pred CCceEEEEEE--cccc--ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 171 SDRELYFSMV--DGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 171 ~~rrI~F~~v--eGDf--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+-. .++- ....=.|.|++. +++|+|+..-.... +.-+.. .......-...|..|++.+++
T Consensus 73 p~~~l~~t~~~~~~~~~~~~s~v~~~l~~~--~~gT~l~~~~~~~~-~~~~~~--~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 73 PDERIVYTYTMHIGGTLLSASLATVEFAPE--GGGTRLTLTEQGAF-LDGDDD--PAGREQGTAALLDNLAAELER 143 (143)
T ss_pred CCceEEEEEeeccCCccccceEEEEEEEEC--CCCEEEEEEEEEec-ccccch--hhhHHHHHHHHHHHHHHHHhC
Confidence 4688877653 2221 122346788875 47799888765421 111111 234456667778888877664
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.07 Score=50.90 Aligned_cols=133 Identities=11% Similarity=-0.025 Sum_probs=77.1
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCCeeEEEEEeee-eeEEEEEEEEEEEEEEEeecCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPGRIWLEQRGLQ-RALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~ggrirv~Qvg~~-~il~~~~~arvvLdv~E~~~~~ 170 (732)
++.+..++||++.||+++||-+.+.+|+..- ..++ ++.+.||+.+..-.+.. .... .. -.+.+..
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~-~d~r~GG~~~~~~~~~~g~~~~--~~----g~~~ei~--- 71 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCE-CDIRVGGSYRYVHRAPDGEEMG--FH----GVYHEVT--- 71 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEE-EeccCCCEEEEEEECCCCCEec--ce----EEEEEEc---
Confidence 5667889999999999999999999999864 1222 24445666544322111 1111 11 1222332
Q ss_pred CCceEEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 171 SDRELYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 171 ~~rrI~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++++|.|+-.-.+ -....=.|.|++. +++|+|+.+..+ +..-.-.......+...-...|..|.+.++
T Consensus 72 p~~~l~~t~~~~~~~~~~s~v~~~l~~~--~~gT~l~l~~~~-~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 72 PPERIVQTEEFEGLPDGVALETVTFTEL--GGRTRLTATSRY-PSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred CCCEEEEEeEecCCCCCceEEEEEEEEC--CCCEEEEEEEEe-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3678887654222 2234457899985 478999986443 211011113444556667777777776543
|
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.032 Score=57.29 Aligned_cols=141 Identities=10% Similarity=0.137 Sum_probs=90.1
Q ss_pred cCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE-EE-EEEec--cceeE-EEEEEEEEEEEE
Q 004764 339 NGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV-RI-LQEGC--KGLLY-MVLHARVVMDIC 413 (732)
Q Consensus 339 ~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv-~q~g~--~gll~-~~~~~rvvLdv~ 413 (732)
.+|.. ++.+.+|+..+++||+.|.+.....+|.+++++++|+++-+... .. +.+.. .+++. .-|.. +...
T Consensus 44 f~gkl--~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVd---v~~~ 118 (202)
T cd08902 44 FGGYL--YKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVD---FSYT 118 (202)
T ss_pred CCCce--EEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEE---EEEE
Confidence 35544 55666678999999999999999999999999999998854433 32 22211 11111 01111 1111
Q ss_pred e-eCCCeEEEE-EEe------cCCc--ceeEEEEEEEcCCC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHH
Q 004764 414 E-QHEQEISFE-QVE------GDFD--SFQGKWLFEQLGSH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCA 481 (732)
Q Consensus 414 e-~~~rrIsf~-~ve------Gdfk--~f~G~W~Lep~gdG--~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~A 481 (732)
. ..+..++.. .++ |-.+ -+=+-|-+.|.+++ .|.+++-+..+++ ++||..+++.++-..+-.....
T Consensus 119 ~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLk--G~LPqsiIdq~~~~~~~~F~~~ 196 (202)
T cd08902 119 TQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLR--GMLPQSAVDTAMASTLVNFYSD 196 (202)
T ss_pred EEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCC--CCccHHHHHHHhhHHHHHHHHH
Confidence 1 122222221 111 1112 22367999998765 4666777778876 6799999999999999999999
Q ss_pred HHHHH
Q 004764 482 IRDYV 486 (732)
Q Consensus 482 LK~rA 486 (732)
||+++
T Consensus 197 Lrk~~ 201 (202)
T cd08902 197 LKKAL 201 (202)
T ss_pred HHHhc
Confidence 98875
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney. |
| >cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.025 Score=52.90 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=72.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 425 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~v 425 (732)
+..++.|+||++.||+.++|-+.+..|+..... +--+.|+...+. .+. +... ++++ .++++|+|.-.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~--~d~~~GG~~~~~----~g~----~~g~-~~~i--~p~~~l~~~w~ 68 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPAK--VDAKVGGKFSLF----GGN----ITGE-FVEL--VPGKKIVQKWR 68 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCce--ecCCCCCEEEEe----CCc----eEEE-EEEE--cCCCEEEEEEE
Confidence 456789999999999999999999999864332 222344544332 121 1121 1222 46788877643
Q ss_pred ec--C-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 004764 426 EG--D-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE 487 (732)
Q Consensus 426 eG--d-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~-~L~ALK~rAE 487 (732)
-. + -....-.|+|++.+ ++|+|++....-+. . - .......-.. .++.|++..+
T Consensus 69 ~~~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~------~-~-~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 69 FKSWPEGHYSTVTLTFTEKD-DETELKLTQTGVPA------G-E-EERTREGWERYYFESIKQTFG 125 (126)
T ss_pred cCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCC------c-h-HHHHHhhHHHHHHHHHHHHhC
Confidence 21 1 12456799999975 56999887664321 1 1 1334455543 6677776653
|
This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m |
| >PTZ00220 Activator of HSP-90 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=55.68 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=68.9
Q ss_pred EcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecCC--
Q 004764 352 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDF-- 429 (732)
Q Consensus 352 I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGdf-- 429 (732)
++||+++||+.+||-+.+..|.-. ..+++--+.|+..++.. +. ...+ .+++ .++++|.|.-.-.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~----~~----~~G~-~~ev--~pp~rlv~tw~~~~~~~ 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN----GS----VEGE-FTEL--EKPKKIVQKWRFRDWEE 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec----Cc----eEEE-EEEE--cCCCEEEEEEecCCCCC
Confidence 479999999999999999998421 12233233455444321 11 1222 1122 467888877532211
Q ss_pred -cceeEEEEEEEcCCCeEEEEEEEE-EEeccCccchHHHHHHHHHhhHHH-HHHHHHHHH
Q 004764 430 -DSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYV 486 (732)
Q Consensus 430 -k~f~G~W~Lep~gdG~TrVty~v~-~ep~~d~~Lp~~lv~r~lr~~l~~-~L~ALK~rA 486 (732)
....-+|+|++.++|+|+|+.... +... .. .-..........+... .|+.|++.+
T Consensus 69 ~~~s~vt~~~~~~~~g~T~lt~~~~g~~~~-~~-~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 69 DVYSKVTIEFRAVEEDHTELKLTQTGIPSL-DK-FGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCceEEEEEEEeCCCCcEEEEEEEecCccc-cc-cCCCchhhHHHhChHHHHHHHHHHHh
Confidence 124678999997667799998876 4221 00 0001233445556666 477777664
|
|
| >PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.18 Score=49.62 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=88.6
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCC-eeEEEEEeee-ee----EEEEEEEEEEEEEEE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPG-RIWLEQRGLQ-RA----LYWHIEARVVLDLQE 165 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~gg-rirv~Qvg~~-~i----l~~~~~arvvLdv~E 165 (732)
+++++.+++|+++||++++|=+-|..-+..+ ..+.-+...+++ ++.+.|.-.. .+ -.+. .....+.-++
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v-~~~l~v~~~e 79 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFV-GGDLRVTRTE 79 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhc-CCCeEEEEEE
Confidence 4678999999999999999975444333322 223333333333 3444442211 11 0000 0011122122
Q ss_pred -eec-CCCCceEEEEEE-ccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 166 -LIH-SASDRELYFSMV-DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 166 -~~~-~~~~rrI~F~~v-eGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+.+ .......+|+.. .|.--.+.|.-.|++ .+++|+++++.+++-++|+-+.-+++++..++...|..-.+.+.+
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~--~~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~~~ 157 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRP--DGGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFTAE 157 (159)
T ss_pred EEecCCCCeEEEEEEEEecCceEEEEEEEEEec--CCCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 123333444433 466678899999999 468999999999999999999999999999999888887775543
|
The function is not known. |
| >cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.12 Score=53.31 Aligned_cols=146 Identities=10% Similarity=0.012 Sum_probs=96.4
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEec-CHHHHHHHHhCccccccccccceEEEEEecCCCC-eeEEEEEeee---ee
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNA-DVDSVWNALTDYERLADFVPNLACSGRIPCPYPG-RIWLEQRGLQ---RA 150 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~A-P~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~gg-rirv~Qvg~~---~i 150 (732)
...+++|..++++++ .+-.++++.|++ |++.++++|.| -..|=+++.++++++.-+++ .+--+....- ..
T Consensus 34 ~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~ 110 (205)
T cd08907 34 GPDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPR 110 (205)
T ss_pred CCCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCC
Confidence 467899999998875 467899999998 55788899999 47888999999988875443 3321211100 00
Q ss_pred E-EEEEEEE---------EE----EEEEEeecCCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc
Q 004764 151 L-YWHIEAR---------VV----LDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF 216 (732)
Q Consensus 151 l-~~~~~ar---------vv----Ldv~E~~~~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi 216 (732)
- +...++. +. .+-...+ +.++ |+- ..+.-.+-|+|.+ .++|+|+|-..++|++.+
T Consensus 111 RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g-VRa-------~~l~sgYlIep~g-~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 111 RDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG-VRA-------VLLTSQYLIEPCG-MGRSRLTHICRADLRGRS 179 (205)
T ss_pred ceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC-eEE-------EEEeccEEEEECC-CCCeEEEEEEEeCCCCCC
Confidence 0 0000000 00 0000011 1111 222 2234568899975 568999999999999999
Q ss_pred cHHHHHHHHHhCHHHHHHHHHH
Q 004764 217 PAIFLERIIRSDLPVNLQALAC 238 (732)
Q Consensus 217 P~~Lv~~~ir~~L~~~L~ALk~ 238 (732)
|.|. +++....+...|..||.
T Consensus 180 P~Wy-nk~~g~~~a~~l~~ir~ 200 (205)
T cd08907 180 PDWY-NKVFGHLCAMEVARIRD 200 (205)
T ss_pred cHHH-HHhHHHHHHHHHHHHHh
Confidence 9999 99999999999999987
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear. |
| >cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.2 Score=46.81 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=73.4
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
++.+..|+||++.||+.+||-+.+..|+...... +...||+..+. .|. + . -.+.+.. ++++|
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~---d~~~GG~~~~~-~g~--~-----~----g~~~~i~---p~~~l 63 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPAKV---DAKVGGKFSLF-GGN--I-----T----GEFVELV---PGKKI 63 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCcee---cCCCCCEEEEe-CCc--e-----E----EEEEEEc---CCCEE
Confidence 5678899999999999999999999998764433 43456665433 111 0 1 1122222 36788
Q ss_pred EEEEEcccc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHH-HHHHHHHHH
Q 004764 176 YFSMVDGDF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPV-NLQALACRA 240 (732)
Q Consensus 176 ~F~~veGDf---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~-~L~ALk~ra 240 (732)
.|+-.-.+. ....=.|.|++. +++|+|+..-...|.. . . ..+...-.. .|..|++..
T Consensus 64 ~~~w~~~~~~~~~~s~v~~~l~~~--~~gT~ltl~~~g~~~~---~--~-~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 64 VQKWRFKSWPEGHYSTVTLTFTEK--DDETELKLTQTGVPAG---E--E-ERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEEEEcCCCCCCCcEEEEEEEEEC--CCCEEEEEEEECCCCc---h--H-HHHHhhHHHHHHHHHHHHh
Confidence 766542221 234568999995 4789999888765542 1 1 223444443 667776644
|
This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m |
| >cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.21 Score=51.50 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=98.0
Q ss_pred ccCcccccccccccCCCccccceeeeeeccCccccCceeEEEEEEEEEcC-CHHHHHHHHhccCcccccCcCCcEEEEEE
Q 004764 305 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKA-PVSEVWNVMTAYETLPEIVPNLAISKILS 383 (732)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~Ev~~rr~D~l~e~~g~~~~V~asI~I~A-PpE~VW~vLtDyE~yPef~P~V~ssrVLe 383 (732)
+-.++|-...+-. .+ ||..++..+ +-..+-...++.|++ |++.++++|.| -..|=+++.+.++++
T Consensus 24 ek~kgW~~~~~~~------~v-ev~~kk~~d----~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie 89 (205)
T cd08907 24 ERFKGWHSAPGPD------NT-ELACKKVGD----GHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIE 89 (205)
T ss_pred hccCCceeecCCC------Cc-EEEEEeCCC----CCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhhe
Confidence 4457787765533 33 788887543 333367888888888 56667899999 566889999988887
Q ss_pred eeCC--EEEEEEEeccceeEEEEEEEEEEEEEe--eCC--CeEEEEEEe---cC----Cc--ceeEEEEEEEcCCCeEEE
Q 004764 384 RENN--KVRILQEGCKGLLYMVLHARVVMDICE--QHE--QEISFEQVE---GD----FD--SFQGKWLFEQLGSHHTLL 448 (732)
Q Consensus 384 r~~g--~~rv~q~g~~gll~~~~~~rvvLdv~e--~~~--rrIsf~~ve---Gd----fk--~f~G~W~Lep~gdG~TrV 448 (732)
.-+. .+-.+.. .+.....-..-++++... .+. --|.-..++ .+ ++ .+.-.+.++|.+.|+|+|
T Consensus 90 ~Ld~n~dI~yY~~--~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~l 167 (205)
T cd08907 90 ALENNTEVYHYVT--DSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRL 167 (205)
T ss_pred eecCCCEEEEEEe--cCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEE
Confidence 7432 2222222 111111111222222211 011 111112222 11 21 233345789999899999
Q ss_pred EEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 004764 449 KYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 485 (732)
Q Consensus 449 ty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~r 485 (732)
+|-..++++ +.+|.++ ++....-+...|..||+-
T Consensus 168 tyi~rvD~r--G~~P~Wy-nk~~g~~~a~~l~~ir~s 201 (205)
T cd08907 168 THICRADLR--GRSPDWY-NKVFGHLCAMEVARIRDS 201 (205)
T ss_pred EEEEEeCCC--CCCcHHH-HHhHHHHHHHHHHHHHhh
Confidence 999999986 5689888 999999999998888863
|
This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear. |
| >COG4276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.37 Score=46.63 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=69.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEE----EEEE-Eeccce-eEEEEEEEEEEEEEeeCCCe
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV----RILQ-EGCKGL-LYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~----rv~q-~g~~gl-l~~~~~~rvvLdv~e~~~rr 419 (732)
+.-..+|+||.|.||++-+..+++-..-|..+ |+-+.+..+ ++.. ...-|+ ...+|.++.+..- +++..+
T Consensus 4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~-~d~~~~ 79 (153)
T COG4276 4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESG-FDNGSR 79 (153)
T ss_pred eEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEEeeecc-cCCcce
Confidence 44556899999999999999999987777765 332333221 1110 111121 1257888865433 345566
Q ss_pred EEEEEEecCCcce--eEEEEEEEcCCCeEEEEEEEEEEecc
Q 004764 420 ISFEQVEGDFDSF--QGKWLFEQLGSHHTLLKYSVESKMQK 458 (732)
Q Consensus 420 Isf~~veGdfk~f--~G~W~Lep~gdG~TrVty~v~~ep~~ 458 (732)
..=.++.|||... +-..+|.+.+ |+|.+.=++.++++.
T Consensus 80 FtDv~i~gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~ 119 (153)
T COG4276 80 FTDVCITGPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPA 119 (153)
T ss_pred eeeeeecCCccceeeEEEeeeecCC-CcEEEEeeEEeeccC
Confidence 7667888999985 2333677765 569998888888753
|
|
| >COG3832 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.35 Score=47.04 Aligned_cols=135 Identities=19% Similarity=0.097 Sum_probs=73.0
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeE-EEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW-LEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrir-v~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
...++.+..|+||++.||+.+||=+.+++|+. -.-. ..+.+-+|+-+ .++.-......+ .. .++++. +
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~-~~d~r~gg~~~~~~~~~~g~~~~~--~~-~~~~v~------p 75 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGA-EFDARTGGGERVRFRGPDGPVHSF--EG-EYLEVV------P 75 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCC-ccceecCCceEEeeecCCCCeeec--ce-EEEEEc------C
Confidence 44688999999999999999999999999998 2211 11112223221 121111111111 11 122222 4
Q ss_pred CceEEEEEEcc--c--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH--HHhCHHHHHHHHHHHHH
Q 004764 172 DRELYFSMVDG--D--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI--IRSDLPVNLQALACRAE 241 (732)
Q Consensus 172 ~rrI~F~~veG--D--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~--ir~~L~~~L~ALk~raE 241 (732)
+.+|.|+-.-. + +..-...|+|.+...+++|.+...... +. +|..-.... +...-...|..|++.++
T Consensus 76 ~~rIv~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 76 PERIVFTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGG-GF--LEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred CcEEEEEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeec-cc--cchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 67877776533 2 335678899999653333333333222 11 333333222 36666677777776554
|
|
| >PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.61 Score=45.86 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=78.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCc----EEEEEEeeCCEEEE--EEE-eccce-------eEEEEEEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA----ISKILSRENNKVRI--LQE-GCKGL-------LYMVLHARVVMD 411 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~----ssrVLer~~g~~rv--~q~-g~~gl-------l~~~~~~rvvLd 411 (732)
|+.++.+++|+++||+.++|-+-|..-+..+- .+...+.++++.++ .+. ....+ +.-.+.... .
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~--~ 78 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTR--T 78 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEE--E
Confidence 45678999999999999999877766655442 33444445555432 221 11111 100111111 1
Q ss_pred EEee--CCCe--EEEEE-EecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 412 ICEQ--HEQE--ISFEQ-VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 412 v~e~--~~rr--Isf~~-veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
-.+. .+.+ ..+.. +.|.--.++|.-+|.+.+ ++|++.+..+++.+ .|+.+..+++++...+...+..-.+.+
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~-~gt~~~~~g~v~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~~ 155 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDG-GGTRLTVEGEVKVK--VPLVGGKIEKAVAENLRKLLEAEQEFT 155 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCceEEEEEEEEEecCC-CCEEEEEEEEEEEE--EccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1121 1222 22221 225444779999999955 45999999887753 445566677777777777776666554
Q ss_pred H
Q 004764 487 E 487 (732)
Q Consensus 487 E 487 (732)
.
T Consensus 156 ~ 156 (159)
T PF10698_consen 156 A 156 (159)
T ss_pred H
Confidence 3
|
The function is not known. |
| >PTZ00220 Activator of HSP-90 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.32 Score=46.25 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=67.9
Q ss_pred EecCHHHHHHHHhCccccccc-cccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEEEEEE
Q 004764 102 VNADVDSVWNALTDYERLADF-VPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMV 180 (732)
Q Consensus 102 V~AP~e~Vw~VLTDYErlpeF-iP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~F~~v 180 (732)
++||++.||+++||-+.+.+| .+... .++.+.||..++.. +. .+ ..+++ .. ++++|.|+-.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~~~---~~d~~~GG~f~~~~-~~-------~~-G~~~e---v~---pp~rlv~tw~ 62 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGSPA---EMDAKVGGKFSLFN-GS-------VE-GEFTE---LE---KPKKIVQKWR 62 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCCCc---cccCCcCCEEEEec-Cc-------eE-EEEEE---Ec---CCCEEEEEEe
Confidence 479999999999999999998 43222 23444566544321 10 11 11222 21 3577776654
Q ss_pred cccc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHH-HHHHHHHhCHHH-HHHHHHHHH
Q 004764 181 DGDF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAI-FLERIIRSDLPV-NLQALACRA 240 (732)
Q Consensus 181 eGDf---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~-Lv~~~ir~~L~~-~L~ALk~ra 240 (732)
-.+. ....-.|.|++.+ +++|+|+.+..--|...-... .....++..... .|..|++.+
T Consensus 63 ~~~~~~~~~s~vt~~~~~~~-~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 63 FRDWEEDVYSKVTIEFRAVE-EDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred cCCCCCCCceEEEEEEEeCC-CCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 2211 1244679999853 367999998884443321111 233445566666 477777643
|
|
| >PLN00188 enhanced disease resistance protein (EDR2); Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.2 Score=53.41 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=90.6
Q ss_pred eeEEEEEEEecCHHHHHHHHhCcc-ccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYE-RLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYE-rlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
+.+++.-+|+|++++||+.|.+.+ .-.+|=..+.+.++|+.-+++.-.++++.....+.+....|=..+++-+.-...+
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 569999999999999999999887 6678999999999999876665555555432221111111111111111100011
Q ss_pred -ceEEEEEEcc----c----c--ceeeEEEEEEecCCC---CeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHH
Q 004764 173 -RELYFSMVDG----D----F--KKFEGKWSIKSGTRS---STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 238 (732)
Q Consensus 173 -rrI~F~~veG----D----f--k~f~GsW~Lepl~~g---~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ 238 (732)
-.|.+.-++- + + ...-|-|.+.|+... .+|.|+|-+.+++++|.|.. .....+..+..+|..+..
T Consensus 307 sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y-~~s~~~~~~l~mL~~VAg 385 (719)
T PLN00188 307 SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY-IPSFQQHCLLQMLNSVAG 385 (719)
T ss_pred cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccccc-CccccccchHHHHHHHHH
Confidence 1222332211 0 1 122488999997422 57999999999999999955 456667777766665555
|
|
| >KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.92 E-value=2.5 Score=44.14 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=98.5
Q ss_pred cCCceEEEEE-EecCcceeEE-EEEEEecCHHHHHHHHhCccccccccccceEEEEEecCC--CCeeEEEEEeeee-eEE
Q 004764 78 EQRKVHCEVE-VVSWRERRIK-AEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPY--PGRIWLEQRGLQR-ALY 152 (732)
Q Consensus 78 ~e~~v~v~v~-~v~~~~rrV~-asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~--ggrirv~Qvg~~~-il~ 152 (732)
+..++.+... +--.+...++ ..+.=+++|+.|++++.|-|==+.|=.+++..+.|+... |+.+ ++.+-... ++.
T Consensus 36 ~k~~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~v-v~w~~kfP~p~~ 114 (219)
T KOG2761|consen 36 DKSTPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEV-VYWVKKFPFPMS 114 (219)
T ss_pred ccCCceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceE-EEEEEeCCcccC
Confidence 4566677662 2222333333 344558899999999999999999999999999998743 3333 22222111 110
Q ss_pred E--EEEEEEEEEEEE-ee-----------cCCCCceEEEEEEccccceeeEEEEEE-ec--CCCCeeEEEEEEEEecCCC
Q 004764 153 W--HIEARVVLDLQE-LI-----------HSASDRELYFSMVDGDFKKFEGKWSIK-SG--TRSSTTTLSYEVNVIPRLN 215 (732)
Q Consensus 153 ~--~~~arvvLdv~E-~~-----------~~~~~rrI~F~~veGDfk~f~GsW~Le-pl--~~g~gT~LtY~l~V~P~~p 215 (732)
- ..-.|+..+..+ .+ .++..+.++- ..+.-.|.+. +. +.+.++...|.....|+++
T Consensus 115 ~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv-------~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~~~ 187 (219)
T KOG2761|consen 115 NRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRV-------TVYRSGWLIRVESRSGDEQGCACEYLYFHNPGGG 187 (219)
T ss_pred CccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEE-------EEEEEEEEEEcccccCCCCccEEEEEEEECCCCC
Confidence 0 001111111110 00 0011212222 4566779998 21 1357899999999999999
Q ss_pred ccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 216 FPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 216 iP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
+|..+++++.++..+..++.|-.-..+.
T Consensus 188 iP~~~v~~~~~~gmp~~vkKm~~a~~~Y 215 (219)
T KOG2761|consen 188 IPKWVVKLAVRKGMPGAVKKMEKALLAY 215 (219)
T ss_pred CcHHHHHHHHHhcChHHHHHHHHHHHhh
Confidence 9999999999999999999887755444
|
|
| >PLN00188 enhanced disease resistance protein (EDR2); Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=11 Score=45.70 Aligned_cols=118 Identities=11% Similarity=0.102 Sum_probs=73.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccC-cccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEE--EEEEEEEEe-eCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYE-TLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLH--ARVVMDICE-QHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE-~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~--~rvvLdv~e-~~~r 418 (732)
+.+.+.-+|+|++++||++|.+.. .-.+|-..+.+.++++.-.+.. .++.+...+.+.+... .-+-+++.. ..+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 678899999999999999999887 7788999999999998865544 3323222111100000 001111111 1233
Q ss_pred --eEEEEEEec----C----Cc--ceeEEEEEEEcC--C--CeEEEEEEEEEEeccCccch
Q 004764 419 --EISFEQVEG----D----FD--SFQGKWLFEQLG--S--HHTLLKYSVESKMQKNSLLS 463 (732)
Q Consensus 419 --rIsf~~veG----d----fk--~f~G~W~Lep~g--d--G~TrVty~v~~ep~~d~~Lp 463 (732)
.|.++.+.- + ++ ..-|-|.+.|+. + .+|.|++-+.++++ +|.+
T Consensus 307 sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlk--GW~~ 365 (719)
T PLN00188 307 SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLK--GWGV 365 (719)
T ss_pred cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccC--cccc
Confidence 345555542 2 22 224889999953 2 47999999999986 5654
|
|
| >PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function | Back alignment and domain information |
|---|
Probab=88.13 E-value=17 Score=35.91 Aligned_cols=121 Identities=14% Similarity=0.240 Sum_probs=66.7
Q ss_pred CHHHHHHHHhc-cCcccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEecCCcce
Q 004764 355 PVSEVWNVMTA-YETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSF 432 (732)
Q Consensus 355 PpE~VW~vLtD-yE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~veGdfk~f 432 (732)
..++||+=|-. +++=-.|+|.+.+|+|+++.++.+ |.... .+ ..+..+ ++..++.++.|.+..|.
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~f--g~---~~v~E~----v~~~~~~~V~f~~~~Gs---- 85 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTF--GG---ATVRER----VTLYPPERVDFAQHDGS---- 85 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEE--TT---EEEEEE----EEEETTTEEEESSSBEE----
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEE--CC---cEEEEE----EEEeCCcEEEEEcCCCC----
Confidence 45689986654 455557999999999999987765 32222 22 234454 44458899999433332
Q ss_pred eEEEEEEEcCCCeEEEEEEEEEEecc---Ccc---chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 433 QGKWLFEQLGSHHTLLKYSVESKMQK---NSL---LSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 433 ~G~W~Lep~gdG~TrVty~v~~ep~~---d~~---Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+-.-.++..++|.=.++|.......+ ++. --......+.+.....+++.||+.++.
T Consensus 86 ~lt~~I~e~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~ 147 (149)
T PF08982_consen 86 SLTNIISEPEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE 147 (149)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEEEEecCCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22224444445655566665554221 110 012347777788888999999998764
|
It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B. |
| >cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily | Back alignment and domain information |
|---|
Probab=86.13 E-value=7 Score=40.49 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=33.4
Q ss_pred ceeeE-EEEEEecCCCCeeEEEEEE--EEecCCCccHHHHHHHHH
Q 004764 185 KKFEG-KWSIKSGTRSSTTTLSYEV--NVIPRLNFPAIFLERIIR 226 (732)
Q Consensus 185 k~f~G-sW~Lepl~~g~gT~LtY~l--~V~P~~piP~~Lv~~~ir 226 (732)
...+| .|++.|.+.++.+.++|.+ ..+|++.||.++++..+-
T Consensus 148 ~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~~~p 192 (208)
T cd08864 148 RYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKLTIP 192 (208)
T ss_pred EEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhccCc
Confidence 45678 8999986424567899999 999999999999876543
|
Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins |
| >cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily | Back alignment and domain information |
|---|
Probab=84.16 E-value=40 Score=33.15 Aligned_cols=88 Identities=17% Similarity=0.256 Sum_probs=54.5
Q ss_pred CHHHHHHHH-hccCcccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEe-cCCcc
Q 004764 355 PVSEVWNVM-TAYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDS 431 (732)
Q Consensus 355 PpE~VW~vL-tDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ve-Gdfk~ 431 (732)
..+++|.=| .-.++=-.|+|++.+|+|+++.++.+ |..+.+ + .....+ ++..++.++.|.+.. |.
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~--~---~~v~e~----vt~~~~~~v~f~~~~~g~--- 85 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFG--P---AKIRET----VTLEPPSRVHFLQADAGG--- 85 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEEC--C---ceEEEE----EEecCCcEEEEEecCCCC---
Confidence 457999855 45666678999999999999887644 332222 2 223444 444578899998776 31
Q ss_pred eeEEEEEEEcCCCeEEEEEEEEEE
Q 004764 432 FQGKWLFEQLGSHHTLLKYSVESK 455 (732)
Q Consensus 432 f~G~W~Lep~gdG~TrVty~v~~e 455 (732)
.-.=.++.-.+|.=.++|..+..
T Consensus 86 -~l~~~iee~~~g~L~lrf~ye~~ 108 (141)
T cd08863 86 -TLTNTIEEPEDGALYLRFVYETT 108 (141)
T ss_pred -eEEEEeccCCCCcEEEEEEEEec
Confidence 22224444445655556655544
|
Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins |
| >COG4276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.14 E-value=49 Score=32.49 Aligned_cols=131 Identities=14% Similarity=0.114 Sum_probs=77.9
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee----eeEEEEEEEEEEEEEEEeecCCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ----RALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~----~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+.....|+||.|.||+--+--+.+...-|..+- |+. .+..+ .|.... .++...-....+-..+|.-. ..
T Consensus 4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~V--V~p--~g~ei--tqgtri~m~l~pfglp~~~tW~Arhte~~~-d~ 76 (153)
T COG4276 4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWIV--VLP--LGSEI--TQGTRIAMGLTPFGLPAGLTWVARHTESGF-DN 76 (153)
T ss_pred eEEeeEecCCHHHHhhhhcCccHHHhcCCCcEE--ecc--CCCcc--cceeeeeecceeecCCCCceEEEEeeeccc-CC
Confidence 567789999999999999999999999998882 332 22111 111111 11111100122233334111 24
Q ss_pred CceEEEEEEcccccee--eEEEEEEecCCCCeeEEEEEEEEecCCC-ccHHHHHHHHHhCHHHHHHH
Q 004764 172 DRELYFSMVDGDFKKF--EGKWSIKSGTRSSTTTLSYEVNVIPRLN-FPAIFLERIIRSDLPVNLQA 235 (732)
Q Consensus 172 ~rrI~F~~veGDfk~f--~GsW~Lepl~~g~gT~LtY~l~V~P~~p-iP~~Lv~~~ir~~L~~~L~A 235 (732)
..+..=.++.|+|... .-.=++.+ .+++|.+.=++..++... +-..+..+.+.-.+..++..
T Consensus 77 ~~~FtDv~i~gPfp~~~WrHtH~F~~--egg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~ 141 (153)
T COG4276 77 GSRFTDVCITGPFPALNWRHTHNFVD--EGGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRS 141 (153)
T ss_pred cceeeeeeecCCccceeeEEEeeeec--CCCcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHH
Confidence 5666667889999874 33333444 468899888888766554 55566666666666666544
|
|
| >KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.83 E-value=45 Score=35.09 Aligned_cols=144 Identities=8% Similarity=0.034 Sum_probs=85.7
Q ss_pred cCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--C-EEEEEEEeccceeE-EEEE-EEEEEEEE
Q 004764 339 NGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--N-KVRILQEGCKGLLY-MVLH-ARVVMDIC 413 (732)
Q Consensus 339 ~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g-~~rv~q~g~~gll~-~~~~-~rvvLdv~ 413 (732)
.+|.+..-...+.=+++|+.|+++..|-+--+.|=-.+...+.++..+ | .+..|...+--.+. ..+. .|..++..
T Consensus 49 ~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~ 128 (219)
T KOG2761|consen 49 KTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESD 128 (219)
T ss_pred CCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecC
Confidence 344333333445568999999999999999999999999999998874 3 33333332111110 0011 11111100
Q ss_pred eeCCCeEEEEEEe--------cCC--cceeEEEEEE----EcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHH
Q 004764 414 EQHEQEISFEQVE--------GDF--DSFQGKWLFE----QLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNL 479 (732)
Q Consensus 414 e~~~rrIsf~~ve--------Gdf--k~f~G~W~Le----p~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L 479 (732)
....-|.-+.+. +.. ..+...|.+. ..++++|...|.....| ++.+|..+++.+++..++..+
T Consensus 129 -~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p--~~~iP~~~v~~~~~~gmp~~v 205 (219)
T KOG2761|consen 129 -EKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNP--GGGIPKWVVKLAVRKGMPGAV 205 (219)
T ss_pred -CceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECC--CCCCcHHHHHHHHHhcChHHH
Confidence 011112222222 111 1566778777 33445688888776666 467999999999999988887
Q ss_pred HHHHHH
Q 004764 480 CAIRDY 485 (732)
Q Consensus 480 ~ALK~r 485 (732)
+-+-..
T Consensus 206 kKm~~a 211 (219)
T KOG2761|consen 206 KKMEKA 211 (219)
T ss_pred HHHHHH
Confidence 766543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Length = 159 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLH 405
IT+ AP+ VWN+ E P + A ++L R+++KV + G ++ +
Sbjct: 8 EITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVS 67
Query: 406 ARVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE 464
RV + + + ++VE G F W + + T+++++ + M+ ++ + +
Sbjct: 68 ERVA----DPVTRTVRAQRVETGPFQYMNIVWEYAETA-EGTVMRWTQDFAMKPDAPVDD 122
Query: 465 AIMEEVIYEDLPSNLCAIRDYVEKREGDNSLA 496
A M + I + + + IRD +E+ G+ A
Sbjct: 123 AWMTDNINRNSRTQMALIRDRIEQAAGERRTA 154
|
| >3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Length = 159 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 8e-11
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 11/152 (7%)
Query: 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRI--PCPYPGRIWLEQRGLQRAL 151
E+ + A ++ VWN D E+ A S + L
Sbjct: 3 GHTDNEITIAAPMELVWNMTNDIEKWPGLFSEYA-SVEVLGRDDDKVTFRLTMHPDADGK 61
Query: 152 YWHIEARVVLDLQELIHSASDRELYFSMVD-GDFKKFEGKWSIKSGTRSSTTTLSYEVNV 210
W + V D R + V+ G F+ W + + + +
Sbjct: 62 VWSWVSERVAD-------PVTRTVRAQRVETGPFQYMNIVWEYAETAEGTVMRWTQDFAM 114
Query: 211 IPRLNFPAIFLERIIRSDLPVNLQALACRAER 242
P ++ I + + + R E+
Sbjct: 115 KPDAPVDDAWMTDNINRNSRTQMALIRDRIEQ 146
|
| >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Length = 147 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-25
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 405
V A + AP V+ + E L + + ++++RE + R +
Sbjct: 4 VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWL 63
Query: 406 ARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSV--ESKMQKNSLLS 463
D F EGDFD ++G W+F G T + ++ E + L
Sbjct: 64 EEEEWDD---ENLRNRFFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLL 119
Query: 464 EAIMEEVIYEDLPSNLCAIRDYVE 487
++++++ E++ S L + + V
Sbjct: 120 RKLVQKLMQENVESLLKGLEERVL 143
|
| >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Length = 147 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 6e-17
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 10/148 (6%)
Query: 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155
++AE + A + V+ D E L ++ + S + R +
Sbjct: 4 VRAERYIPAPPERVYRLAKDLEGLKPYLKEVE-SLEVVAREGARTRSRWVAVAMGKKVRW 62
Query: 156 EARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSS--TTTLSYEVNVIPR 213
D + F +GDF ++EG W + TL+YE+ +
Sbjct: 63 LEEEEWD-------DENLRNRFFSPEGDFDRYEGTWVFLPEGEGTRVVLTLTYELTIPIF 115
Query: 214 LNFPAIFLERIIRSDLPVNLQALACRAE 241
++++++ ++ L+ L R
Sbjct: 116 GGLLRKLVQKLMQENVESLLKGLEERVL 143
|
| >3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Length = 169 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 9e-20
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 9/160 (5%)
Query: 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI---LQEGCKGLLYMVLH 405
SI V AP VW+V E PE+ A ++IL ++ + + G ++ +
Sbjct: 8 SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVS 67
Query: 406 ARVVMDICEQHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSE 464
RV ++ + + +VE G F W + + T +++ E M+ +
Sbjct: 68 HRVP----DKGSRTVRAHRVETGPFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDN 122
Query: 465 AIMEEVIYEDLPSNLCAIRDYVEKREGDNSLANDSVETTN 504
A M + +N+ I+ +E R + SV T
Sbjct: 123 AHMTAHLNTTTRANMERIKKIIEDRHREGQRTPASVLPTE 162
|
| >3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Length = 169 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 3e-09
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 13/152 (8%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACS---GRIPCPYPGRIWLEQRGLQRAL 151
R ++VNA + VW+ D E + A + + + R+ R
Sbjct: 4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVW 63
Query: 152 YWHIEARVVLDLQELIHSASDRELYFSMVD-GDFKKFEGKWSIKSGTRSSTTTLSYEVNV 210
W + V D R + V+ G F W+ ++ + E ++
Sbjct: 64 EWV--SHRVPD-------KGSRTVRAHRVETGPFAYMNLHWTYRAVAGGTEMRWVQEFDM 114
Query: 211 IPRLNFPAIFLERIIRSDLPVNLQALACRAER 242
P F + + + N++ + E
Sbjct: 115 KPGAPFDNAHMTAHLNTTTRANMERIKKIIED 146
|
| >3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Length = 172 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 4e-10
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMV 403
R V ++TV AP VW V+ +I P +IL +
Sbjct: 5 RHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEINT 64
Query: 404 LHARVVMDICEQHEQEISFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSL 461
+R +D + I++ Q+E G+W L + T L + + + +
Sbjct: 65 WTSRRDLD---PARRVIAYRQLETAPIVGHMSGEWRAFTLDAERTQLVLTHDFVT-RAAG 120
Query: 462 LSEAI------------MEEVIYEDLPSNLCAIRDYVEKREGDNSLAND 498
+ +E V+ + ++L A+ E+R
Sbjct: 121 DDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERRVRAAGGVGT 169
|
| >3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Length = 172 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 32/168 (19%)
Query: 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSG-----RIPCPYPGRIWLEQRGLQ 148
R ++ + V A D VW L D AD P R+ ++ G
Sbjct: 5 RHVEHTVTVAAPADLVWEVLADVLGYADIFPP--TEKVEILEEGQGYQVVRLHVDVAG-- 60
Query: 149 RALYWHIEARVVLDLQELIHSASDRELYFSMVDGD--FKKFEGKWSIKSGTRSSTT---T 203
+R LD + R + + ++ G+W + T T
Sbjct: 61 --EINTWTSRRDLD-------PARRVIAYRQLETAPIVGHMSGEWRAFTLDAERTQLVLT 111
Query: 204 LSYEV-------NVIPRLNFPAI--FLERIIRSDLPVNLQALACRAER 242
+ V +L LE ++ + +L A+ AER
Sbjct: 112 HDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAER 159
|
| >3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Length = 155 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-06
Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 10/146 (6%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 405
V ++T+ P +++ V LP ++ +L ++L + ++ + +
Sbjct: 6 VRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPA------PLGT 59
Query: 406 ARVVMDICEQHE-QEISFEQVEGDFDSFQGKWLFEQL-GSHHTLLKYSVESKMQKNSL-- 461
++ + I++ + G G+ LF G+ T + + + S
Sbjct: 60 VSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGA 119
Query: 462 LSEAIMEEVIYEDLPSNLCAIRDYVE 487
+ + + + L +L + E
Sbjct: 120 VIARMFNQEPSQQLRDDLMRFKREQE 145
|
| >3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 4e-06
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 22/148 (14%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
M + + VW + + L D++P + L + G R L
Sbjct: 3 HTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIP-----------SSKLTEGGRVRHLANP 51
Query: 155 IEARVVLDLQELIHSASDRELYFSMVDGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIP 212
++ L+ + +R +S+++ F + +K GT S+T+ + + P
Sbjct: 52 DGETIIERLEV--FNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTP 109
Query: 213 RLNFPAI---FLERIIRSDLPVNLQALA 237
+ I L+AL
Sbjct: 110 VAVSDEEAINLVHGIYSD----GLKALQ 133
|
| >2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-06
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
++ + V A VW + D+ + + P ++ + + P G +R
Sbjct: 3 TLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVS-APTLRGASPHTP-----GAERVFGAG 56
Query: 155 IEARVVLDLQELIHSASDRELYFSMVDGDF--KKFEGKWSIKSGTRSSTT-TLSYEVNVI 211
E +V L + S R L ++M D F + T + +
Sbjct: 57 TEEELVERL--VERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCS 114
Query: 212 PRLN--FPAIFLERIIRSDLPVNLQALACRAER 242
P ++ + + L ALA R R
Sbjct: 115 PETARELESVIGDGVFAV----GLNALAERYGR 143
|
| >2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 1e-04
Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 15/151 (9%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 405
+ S+ V AP ++VW ++ + + P ++ + + G + +
Sbjct: 4 LRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTP-----GAERVFGAGTE 58
Query: 406 ARVVMDICEQHEQE--ISFEQVEGDF--DSFQGKWLFEQLGSHHTLLKYS--VESKMQKN 459
+V + E+ E + + + F + + H + ++ + +
Sbjct: 59 EELVERLVERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSPETA 118
Query: 460 SLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490
L I + V L A+ + + E
Sbjct: 119 RELESVIGDGVFA----VGLNALAERYGRLE 145
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 97/690 (14%), Positives = 184/690 (26%), Gaps = 233/690 (33%)
Query: 75 DEDEQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPC 134
D + + +++S E D + L+ E D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMS-------- 57
Query: 135 PYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKW--- 191
L+W +L QE E+ V+ + K+
Sbjct: 58 --KDA---VSG--TLRLFW-----TLLSKQE--------EMVQKFVEEVLRI-NYKFLMS 96
Query: 192 SIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKI 250
IK+ R S T Y N +F + V+ R +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVS------RLQ-------PY 137
Query: 251 PMIKNSFGELSLPILASPSLDFDGGLPEKGKAPHGEFNENIVSSNFGSVPPSSSDLNSKW 310
++ + EL P K G G K
Sbjct: 138 LKLRQALLELR---------------PAKNVLIDGVLG-------SG-----------KT 164
Query: 311 GVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVH-----RCVVASITVKAPVSEVWNVMTA 365
V VC + D + C ++ ++ +
Sbjct: 165 WVALDVCL-------SYKVQCKMDF-----KIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 366 YETLPEIVPNLAISKILSRENNKVRILQE--GCKGLLYM--VLHARVV--MDI-CEQHEQ 418
+ + + N+ +I S + R+L+ LL + V +A+ ++ C
Sbjct: 213 WTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC----- 266
Query: 419 EISFEQV------EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIY 472
++ + D HH++ E K SLL + + +
Sbjct: 267 -----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYL--DCRP 315
Query: 473 EDLPSNLCAIRDYV------EKREGDNSLANDSVETTNHTQSSDDLTQSSDELGASSSSD 526
+DLP + R+G + + H D LT SS
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHVN-CDKLTT------IIESS- 362
Query: 527 NEDLVDSETPNSFKQR-------P---RVPGLQTNIEVLKAELLEFISKHGQEGFMPMRK 576
++ P +++ P +P + ++ ++++ M +
Sbjct: 363 ----LNVLEPAEYRKMFDRLSVFPPSAHIP-TIL-LSLIWFDVIK-------SDVMVVVN 409
Query: 577 QLRKHGRVDVEKAITRMGGFRRMASLMNLALAYK---------HRK-------PKGY--- 617
+L K VEK S+ ++ L K HR PK +
Sbjct: 410 KLHK--YSLVEK-----QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 618 ------WDN---------LENLE--EEISRFQRSWGMDPSFMPSRKSFERAGRYDIARAL 660
D L+N+E E ++ F R +D F+ +K I
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFL-EQK---------IRHDS 511
Query: 661 EKWGGLHEVSRLLSLKLRHPNRRAHIIKDK 690
W + L +L+ + +I +
Sbjct: 512 TAWNASGSILNTL-QQLK--FYKPYICDND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 86/543 (15%), Positives = 168/543 (30%), Gaps = 147/543 (27%)
Query: 73 KEDEDEQRKVHCEVEV--------VSWRERRI------KAEMLVNADVDSVWNALTDYER 118
K+ +D + + + E+ R+ K E +V V+ V +Y+
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKF 93
Query: 119 LADFVPNLACSGRIPCPYPGRIWLEQR-----GLQRALYWHIE-ARVVLDLQELIHSASD 172
L + R P R+++EQR Q +++ + L L++ +
Sbjct: 94 LMS---PIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 173 RELYFSMVDG---------------DFK---KFEGK--WSIKSGTRSSTT-------TLS 205
+ ++DG +K K + K W + +S L
Sbjct: 150 AK--NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLL 206
Query: 206 YEV------------NVIPRLNFPAIFLERIIRS-DLPVNLQALA--CRAE--RSFGWNQ 248
Y++ N+ R++ L R+++S L L A+ +F +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 249 KIPMI---KNSFGELSLPILASPSLD-FDGGL-PEKGKAPHGEFNENIVSSNFGSVPPSS 303
KI + K LS SLD L P++ K + +P
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLDCRPQDLPREV 322
Query: 304 SDLNS-KWGVFGQVCR--LDRPCFVDEVHLRRFDGLLE------NGGVHR-----CVVAS 349
N + + + R L V+ + ++E +R V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 350 ITVKAP---VSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI------LQEGCKGLL 400
+ P +S +W + + +V L ++ ++ + I L+ K
Sbjct: 383 PSAHIPTILLSLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 401 YMVLHARVV------------------------------MDICEQHEQEISFEQVEGDFD 430
LH +V + E E+ F V DF
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 431 SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSN---LCAIRDYVE 487
+L +++ H + + S + N+L + I ++ P + AI D++
Sbjct: 502 -----FLEQKI-RHDSTAWNASGSIL--NTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 488 KRE 490
K E
Sbjct: 554 KIE 556
|
| >3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Length = 161 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 17/133 (12%), Positives = 45/133 (33%), Gaps = 10/133 (7%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
+ ++ + A D V++ L D + A P + + + + A+
Sbjct: 8 ELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNNAYRWEMEKVGVDKHAIQSV 67
Query: 155 IEARVVLDLQELIHSASDRELYFSMVDGDF-KKFEGKWSIKSGTRSSTTTLSYEVNVIPR 213
D ++ +S + G+ G W++ + + T + ++ +
Sbjct: 68 YACTYHAD-------KEAGKITWSPIKGEGNGVVSGSWTLSA-KGDNATAVKFQTSAELT 119
Query: 214 LNFPAIFLERIIR 226
+ P+ L+ I
Sbjct: 120 VPLPS-LLKLAIS 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| 3tfz_A | 172 | Cyclase; helix-GRIP, BET V1-like superfamily, bios | 99.85 | |
| 3tl1_A | 159 | WHIE ORF VI, polyketide cyclase; helix-GRIP fold, | 99.83 | |
| 1t17_A | 148 | Conserved hypothetical protein; beta-alpha-beta-BE | 99.83 | |
| 3tvq_A | 169 | Multifunctional cyclase-dehydratase-3-O-methyl TR | 99.81 | |
| 2d4r_A | 147 | Hypothetical protein TTHA0849; start domain, struc | 99.76 | |
| 1t17_A | 148 | Conserved hypothetical protein; beta-alpha-beta-BE | 99.74 | |
| 3tfz_A | 172 | Cyclase; helix-GRIP, BET V1-like superfamily, bios | 99.73 | |
| 3tl1_A | 159 | WHIE ORF VI, polyketide cyclase; helix-GRIP fold, | 99.73 | |
| 3tvq_A | 169 | Multifunctional cyclase-dehydratase-3-O-methyl TR | 99.7 | |
| 2d4r_A | 147 | Hypothetical protein TTHA0849; start domain, struc | 99.69 | |
| 3ggn_A | 155 | Uncharacterized protein DR_A0006; structural genom | 99.66 | |
| 3p9v_A | 161 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 2le1_A | 151 | Uncharacterized protein; structural genomics, nort | 99.54 | |
| 3f08_A | 146 | Uncharacterized protein Q6HG14; NESG Q6HG14_bachk | 99.53 | |
| 2pcs_A | 162 | Conserved protein; structural genomics, unknown fu | 99.49 | |
| 3f08_A | 146 | Uncharacterized protein Q6HG14; NESG Q6HG14_bachk | 99.49 | |
| 2le1_A | 151 | Uncharacterized protein; structural genomics, nort | 99.49 | |
| 3ggn_A | 155 | Uncharacterized protein DR_A0006; structural genom | 99.48 | |
| 3ijt_A | 155 | SMU.440, putative uncharacterized protein; hypothe | 99.46 | |
| 3qsz_A | 189 | STAR-related lipid transfer protein; structural ge | 99.46 | |
| 2ns9_A | 157 | Hypothetical protein APE2225; uncharacterized cons | 99.46 | |
| 3p51_A | 160 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 3p9v_A | 161 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 2pcs_A | 162 | Conserved protein; structural genomics, unknown fu | 99.37 | |
| 3p51_A | 160 | Uncharacterized protein; structural genomics, PSI- | 99.37 | |
| 3qsz_A | 189 | STAR-related lipid transfer protein; structural ge | 99.34 | |
| 3ijt_A | 155 | SMU.440, putative uncharacterized protein; hypothe | 99.25 | |
| 2ns9_A | 157 | Hypothetical protein APE2225; uncharacterized cons | 99.23 | |
| 1tw0_A | 157 | Pathogenesis-related class 10 protein SPE-16; seve | 99.21 | |
| 2qim_A | 158 | PR10.2B; trans-zeatin, cytokinin, plant hormones, | 99.21 | |
| 1e09_A | 159 | PRU AV 1; allergen, major cherry allergen, pathoge | 99.17 | |
| 1icx_A | 155 | Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, | 99.13 | |
| 3rt2_A | 183 | Abscisic acid receptor PYL10; ABA-independent PP2C | 99.1 | |
| 1ln1_A | 214 | PC-TP, phosphatidylcholine transfer protein; start | 99.1 | |
| 3rt2_A | 183 | Abscisic acid receptor PYL10; ABA-independent PP2C | 99.1 | |
| 2i9y_A | 166 | Major latex protein-like protein 28 or MLP-like pr | 99.05 | |
| 3oqu_A | 205 | Abscisic acid receptor PYL9; RCAR1, hormone recept | 99.02 | |
| 3oqu_A | 205 | Abscisic acid receptor PYL9; RCAR1, hormone recept | 99.01 | |
| 1tw0_A | 157 | Pathogenesis-related class 10 protein SPE-16; seve | 98.98 | |
| 1icx_A | 155 | Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, | 98.97 | |
| 2qpv_A | 156 | Uncharacterized protein ATU1531; structural genomi | 98.95 | |
| 2qim_A | 158 | PR10.2B; trans-zeatin, cytokinin, plant hormones, | 98.94 | |
| 3p0l_A | 221 | Steroidogenic acute regulatory protein, mitochond; | 98.94 | |
| 1e09_A | 159 | PRU AV 1; allergen, major cherry allergen, pathoge | 98.93 | |
| 3kl1_A | 190 | PYL2, putative uncharacterized protein AT2G26040; | 98.92 | |
| 3jrs_A | 208 | PYL1, putative uncharacterized protein AT5G46790; | 98.91 | |
| 2flh_A | 155 | Cytokinin-specific binding protein; zeatin, pathog | 98.89 | |
| 3kl1_A | 190 | PYL2, putative uncharacterized protein AT2G26040; | 98.88 | |
| 1ln1_A | 214 | PC-TP, phosphatidylcholine transfer protein; start | 98.87 | |
| 3jrs_A | 208 | PYL1, putative uncharacterized protein AT5G46790; | 98.86 | |
| 2qpv_A | 156 | Uncharacterized protein ATU1531; structural genomi | 98.86 | |
| 3rws_A | 168 | MTN13 protein; zeatin, cytokinin, hormone, lucerne | 98.85 | |
| 2vjg_A | 154 | Major allergen DAU C 1; major carrot allergen, pat | 98.84 | |
| 2e3n_A | 255 | Lipid-transfer protein CERT; ceramide transfer, li | 98.81 | |
| 4a8u_A | 159 | Major pollen allergen BET V 1-J; PR-10 protein; 1. | 98.81 | |
| 3k3k_A | 211 | Abscisic acid receptor PYR1; ABA receptor, plant h | 98.8 | |
| 2i9y_A | 166 | Major latex protein-like protein 28 or MLP-like pr | 98.77 | |
| 1jss_A | 224 | Stard4, cholesterol-regulated start protein 4; sta | 98.75 | |
| 3k3k_A | 211 | Abscisic acid receptor PYR1; ABA receptor, plant h | 98.75 | |
| 1em2_A | 229 | MLN64 protein; beta barrel, lipid binding protein; | 98.71 | |
| 3qrz_A | 223 | Abscisic acid receptor PYL5; crystal, hormone rece | 98.71 | |
| 2r55_A | 231 | STAR-related lipid transfer protein 5; alpha and b | 98.69 | |
| 1xuv_A | 178 | Hypothetical protein MM0500; alpha-beta protein, n | 98.69 | |
| 2flh_A | 155 | Cytokinin-specific binding protein; zeatin, pathog | 98.68 | |
| 2vjg_A | 154 | Major allergen DAU C 1; major carrot allergen, pat | 98.67 | |
| 2vq5_A | 201 | S-norcoclaurine synthase; lyase, S- norcoclaurine | 98.66 | |
| 3rws_A | 168 | MTN13 protein; zeatin, cytokinin, hormone, lucerne | 98.63 | |
| 2il5_A | 171 | Hypothetical protein; structural genomics, APC2365 | 98.62 | |
| 4a8u_A | 159 | Major pollen allergen BET V 1-J; PR-10 protein; 1. | 98.61 | |
| 3oji_A | 189 | Abscisic acid receptor PYL3; crystal, PP2C, pyraba | 98.6 | |
| 3oji_A | 189 | Abscisic acid receptor PYL3; crystal, PP2C, pyraba | 98.6 | |
| 1z94_A | 147 | Conserved hypothetical protein; NESG, CV1439, stru | 98.6 | |
| 2leq_A | 146 | Uncharacterized protein; start domains, structural | 98.59 | |
| 3ie5_A | 165 | Phenolic oxidative coupling protein HYP-1; hyperic | 98.56 | |
| 2ldk_A | 172 | Uncharacterized protein; structural genomics, nort | 98.55 | |
| 3p0l_A | 221 | Steroidogenic acute regulatory protein, mitochond; | 98.53 | |
| 2lgh_A | 144 | Uncharacterized protein; AHSA1, start domain, COG3 | 98.53 | |
| 2lcg_A | 142 | Uncharacterized protein; start domain, structural | 98.5 | |
| 1xfs_A | 178 | NC_840354, conserved hypothetical protein; structu | 98.5 | |
| 2leq_A | 146 | Uncharacterized protein; start domains, structural | 98.49 | |
| 2lf2_A | 175 | Uncharacterized protein; NESG, structural genomics | 98.48 | |
| 2l8o_A | 144 | Uncharacterized protein; mixed alpha-beta protein, | 98.45 | |
| 3pu2_A | 164 | Uncharacterized protein; SRPBCC superfamily, PSI-b | 98.44 | |
| 1jss_A | 224 | Stard4, cholesterol-regulated start protein 4; sta | 98.43 | |
| 3ie5_A | 165 | Phenolic oxidative coupling protein HYP-1; hyperic | 98.42 | |
| 3qrz_A | 223 | Abscisic acid receptor PYL5; crystal, hormone rece | 98.41 | |
| 2e3n_A | 255 | Lipid-transfer protein CERT; ceramide transfer, li | 98.4 | |
| 2l9p_A | 164 | Uncharacterized protein; structural genomics, nort | 98.39 | |
| 1xn6_A | 143 | Hypothetical protein BC4709; structural genomics, | 98.39 | |
| 1z94_A | 147 | Conserved hypothetical protein; NESG, CV1439, stru | 98.35 | |
| 3q6a_A | 135 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 3rd6_A | 161 | MLL3558 protein; structural genomics, PSI-biology, | 98.33 | |
| 2pso_A | 237 | STAR-related lipid transfer protein 13; alpha and | 98.33 | |
| 3put_A | 166 | Hypothetical conserved protein; structural genomic | 98.31 | |
| 2vq5_A | 201 | S-norcoclaurine synthase; lyase, S- norcoclaurine | 98.3 | |
| 1em2_A | 229 | MLN64 protein; beta barrel, lipid binding protein; | 98.3 | |
| 2il5_A | 171 | Hypothetical protein; structural genomics, APC2365 | 98.29 | |
| 2lak_A | 160 | AHSA1-like protein RHE_CH02687; NESG, structural g | 98.28 | |
| 2lcg_A | 142 | Uncharacterized protein; start domain, structural | 98.28 | |
| 3fo5_A | 258 | Thioesterase, adipose associated, isoform BFIT2; o | 98.26 | |
| 2lgh_A | 144 | Uncharacterized protein; AHSA1, start domain, COG3 | 98.24 | |
| 2r55_A | 231 | STAR-related lipid transfer protein 5; alpha and b | 98.24 | |
| 3q64_A | 162 | MLL3774 protein; structural genomics, PSI-biology, | 98.23 | |
| 2wql_A | 154 | Major allergen DAU C 1; pathogenesis-related prote | 98.23 | |
| 2nn5_A | 184 | Hypothetical protein EF_2215; structural genomics, | 98.23 | |
| 2lak_A | 160 | AHSA1-like protein RHE_CH02687; NESG, structural g | 98.21 | |
| 3eli_A | 152 | AHSA1, AHA1 domain protein; alpha-beta protein, st | 98.2 | |
| 1xuv_A | 178 | Hypothetical protein MM0500; alpha-beta protein, n | 98.2 | |
| 3q6a_A | 135 | Uncharacterized protein; structural genomics, PSI- | 98.18 | |
| 2l8o_A | 144 | Uncharacterized protein; mixed alpha-beta protein, | 98.18 | |
| 1xn6_A | 143 | Hypothetical protein BC4709; structural genomics, | 98.15 | |
| 2nn5_A | 184 | Hypothetical protein EF_2215; structural genomics, | 98.13 | |
| 2ldk_A | 172 | Uncharacterized protein; structural genomics, nort | 98.13 | |
| 3uid_A | 168 | Putative uncharacterized protein; SRPBCC superfami | 98.1 | |
| 3q63_A | 151 | MLL2253 protein; structural genomics, PSI-biology, | 98.1 | |
| 1xfs_A | 178 | NC_840354, conserved hypothetical protein; structu | 98.1 | |
| 3fo5_A | 258 | Thioesterase, adipose associated, isoform BFIT2; o | 98.09 | |
| 1vjh_A | 122 | BET V I allergen family; structural genomics, cent | 98.04 | |
| 2k5g_A | 191 | Uncharacterized protein; structural genomiccs, pro | 98.01 | |
| 2lf2_A | 175 | Uncharacterized protein; NESG, structural genomics | 98.01 | |
| 1xn5_A | 146 | BH1534 unknown conserved protein; structural genom | 98.0 | |
| 2pso_A | 237 | STAR-related lipid transfer protein 13; alpha and | 97.97 | |
| 2l9p_A | 164 | Uncharacterized protein; structural genomics, nort | 97.92 | |
| 1xn5_A | 146 | BH1534 unknown conserved protein; structural genom | 97.92 | |
| 3pu2_A | 164 | Uncharacterized protein; SRPBCC superfamily, PSI-b | 97.91 | |
| 2wql_A | 154 | Major allergen DAU C 1; pathogenesis-related prote | 97.79 | |
| 2k5g_A | 191 | Uncharacterized protein; structural genomiccs, pro | 97.79 | |
| 2kew_A | 152 | Uncharacterized protein YNDB; start domain, resona | 97.78 | |
| 3q64_A | 162 | MLL3774 protein; structural genomics, PSI-biology, | 97.76 | |
| 3q63_A | 151 | MLL2253 protein; structural genomics, PSI-biology, | 97.72 | |
| 3rd6_A | 161 | MLL3558 protein; structural genomics, PSI-biology, | 97.71 | |
| 2kew_A | 152 | Uncharacterized protein YNDB; start domain, resona | 97.69 | |
| 3put_A | 166 | Hypothetical conserved protein; structural genomic | 97.67 | |
| 3uid_A | 168 | Putative uncharacterized protein; SRPBCC superfami | 97.62 | |
| 4fpw_A | 181 | CALU16; structural genomics, PSI-biology, northeas | 97.62 | |
| 1vjh_A | 122 | BET V I allergen family; structural genomics, cent | 97.59 | |
| 3eli_A | 152 | AHSA1, AHA1 domain protein; alpha-beta protein, st | 97.57 | |
| 1x53_A | 145 | Activator of 90 kDa heat shock protein ATPase homo | 97.55 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 97.5 | |
| 4fpw_A | 181 | CALU16; structural genomics, PSI-biology, northeas | 97.5 | |
| 1zxf_A | 155 | CALC; SELF-sacrificing resistance protein, structu | 97.36 | |
| 1x53_A | 145 | Activator of 90 kDa heat shock protein ATPase homo | 97.35 | |
| 2luz_A | 192 | CALU16; structural genomics, northeast structural | 97.23 | |
| 3ni8_A | 158 | PFC0360W protein; heat shock, malaria, ATPase, str | 97.07 | |
| 2luz_A | 192 | CALU16; structural genomics, northeast structural | 97.03 | |
| 1zxf_A | 155 | CALC; SELF-sacrificing resistance protein, structu | 96.68 | |
| 3ni8_A | 158 | PFC0360W protein; heat shock, malaria, ATPase, str | 96.39 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.12 | |
| 2lio_A | 136 | Uncharacterized protein; structural genomics, nort | 94.0 | |
| 2ffs_A | 157 | Hypothetical protein PA1206; 7-stranded beta sheet | 93.16 | |
| 2lio_A | 136 | Uncharacterized protein; structural genomics, nort | 91.33 |
| >3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=179.32 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=121.2
Q ss_pred eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEE-EeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 342 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 342 ~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q-~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
.|.+++.++.|+||+++||++|+|+++||+|+|+|.+++++++.++..++.. ....|.. ..|.++++++ +++++|
T Consensus 3 ~M~~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~~~~~~~~~~~G~~-~~~~s~~~~~---~~~~~i 78 (172)
T 3tfz_A 3 HMRHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGYQVVRLHVDVAGEI-NTWTSRRDLD---PARRVI 78 (172)
T ss_dssp CCEEEEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEEEEE---TTTTEE
T ss_pred CCcEEEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCEEEEEEEEecCCEE-EEEEEEEEEe---CCCCEE
Confidence 4688999999999999999999999999999999999999999888764433 4556653 6677775433 345789
Q ss_pred EEEEE--ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCc-----------cchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 421 SFEQV--EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-----------LLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 421 sf~~v--eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~-----------~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
.|+++ .|+|+.+.|.|+|++.++++|+|+|.++|++.... ..+..++.+++.+++..+|.+||++||
T Consensus 79 ~~~~~~~~gpf~~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE 158 (172)
T 3tfz_A 79 AYRQLETAPIVGHMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAE 158 (172)
T ss_dssp EEEEEECCTTEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCChhhcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999 58999999999999998788999999998864321 123456899999999999999999999
Q ss_pred hhhCC
Q 004764 488 KREGD 492 (732)
Q Consensus 488 ~~~~~ 492 (732)
++...
T Consensus 159 ~~~~~ 163 (172)
T 3tfz_A 159 RRVRA 163 (172)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87554
|
| >3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-20 Score=176.61 Aligned_cols=143 Identities=22% Similarity=0.416 Sum_probs=121.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEE---EeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q---~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+++.++.|+||+++||++|+|+++||+|+|+|.+++++++.++..++.. ....|+. ..|+++++++ .+.++|.
T Consensus 4 ~v~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~~~~rl~~~~~~~G~~-~~~ts~~~~d---~~~~~I~ 79 (159)
T 3tl1_A 4 HTDNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDKVTFRLTMHPDADGKV-WSWVSERVAD---PVTRTVR 79 (159)
T ss_dssp EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSEEEEEEEECCCTTSCC-CEEEEEEEEE---TTTTEEE
T ss_pred eeEEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCEEEEEEEEEeccCceE-EEEEEEEEEc---CCCCEEE
Confidence 4889999999999999999999999999999999999999877665543 3556654 5677775443 3457999
Q ss_pred EEEE-ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 422 FEQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 422 f~~v-eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
|+++ +|||+.+.|.|+|++.++ +|+|+|.++|++.++.+++...+.+.+.+++...|++||+++|+..+.
T Consensus 80 ~~~~~~gPf~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~~~~ 150 (159)
T 3tl1_A 80 AQRVETGPFQYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAGE 150 (159)
T ss_dssp EEESSCTTEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCChhhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence 9988 799999999999999987 599999999988655566767788999999999999999999987654
|
| >1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-20 Score=172.83 Aligned_cols=140 Identities=15% Similarity=0.241 Sum_probs=118.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC----CEEEEEE-EeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN----NKVRILQ-EGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~----g~~rv~q-~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.|+||+++||++++|+++||+|+|+|.+++++++.+ +...... .+..++ ..+|++++++ .+++
T Consensus 2 ~~~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~v~~----~~~~ 76 (148)
T 1t17_A 2 HRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFL-REKFATRVRR----DKDA 76 (148)
T ss_dssp CEEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSS-CCEEEEEEEE----ETTT
T ss_pred CEEEEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEecce-eEEEEEEEEE----cCCC
Confidence 4688999999999999999999999999999999999998654 3333322 344443 3567777554 3565
Q ss_pred -eEEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 419 -EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 419 -rIsf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
+|.|++++|+|+.+.|.|+|++.++| |+|+|.+++++. ++++..++..++...+..++++|++||++.++
T Consensus 77 ~~i~~~~~~G~f~~~~g~w~f~~~~~g-t~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~~ 147 (148)
T 1t17_A 77 RSIDVSLLYGPFKRLNNGWRFMPEGDA-TRVEFVIEFAFK--SALLDAMLAANVDRAAGKLIACFEARAQQLHG 147 (148)
T ss_dssp CEEEEEESSTTSSCEEEEEEEEEETTE-EEEEEEEEECCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEECCCChhccEEEEEEEECCCC-eEEEEEEEEEEC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999877 999999999974 56788999999999999999999999998875
|
| >3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=173.91 Aligned_cols=144 Identities=21% Similarity=0.350 Sum_probs=122.2
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEE---EeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q---~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
.+++.++.|+||+++||++|+|+++||+|+|+|..++++++.++..++.. ....|.. ..|+++.+++ .+.++|
T Consensus 3 ~~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-~~~ts~~~~d---~~~~~I 78 (169)
T 3tvq_A 3 ARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRV-WEWVSHRVPD---KGSRTV 78 (169)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEETTEEEEEEEECCCTTSCC-CEEEEEEEEE---GGGTEE
T ss_pred CeEEEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCCCEEEEEEEEEecCCCeE-EEEEEEEEEc---CCCcEE
Confidence 46889999999999999999999999999999999999999888665543 2455643 5677765443 445799
Q ss_pred EEEEE-ecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 421 SFEQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 421 sf~~v-eGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
.|+++ .|||+.+.|.|+|+|.++| |+|+|.++|++.++.+++...+.+.+..++...|++||+++|+..+.
T Consensus 79 ~~~~l~~gPf~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~ 150 (169)
T 3tvq_A 79 RAHRVETGPFAYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHRE 150 (169)
T ss_dssp EEEESSCTTEEEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChhheeeEEEEEECCCC-EEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence 99975 5999999999999999887 99999999987655667888899999999999999999999987665
|
| >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-17 Score=147.87 Aligned_cols=142 Identities=19% Similarity=0.274 Sum_probs=111.1
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEE-EEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv-~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
|..++.++.|+||+++||++|+|+++||+|+|++.++++++..+++... +.....|. ...|..+++. ..++++|.
T Consensus 1 M~~~~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~~~~---~~~~~~i~ 76 (147)
T 2d4r_A 1 MPEVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGK-KVRWLEEEEW---DDENLRNR 76 (147)
T ss_dssp -CEEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTE-EEEEEEEEEE---ETTTTEEE
T ss_pred CCeEEEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEEEEEeCCc-eEEEEEEEEE---cCCCcEEE
Confidence 3468899999999999999999999999999999999999876655432 22233343 2445554322 14568999
Q ss_pred EEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccC--ccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d--~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
|+.++|+|..+.|.|+|++.++| |+|+|.+++++.+. ..+...++...+++.+..+|++|+++||+.
T Consensus 77 ~~~~~g~~~~~~~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~ 145 (147)
T 2d4r_A 77 FFSPEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA 145 (147)
T ss_dssp EEEEEESCSEEEEEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccCChhheEEEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888999999999887 99999999987521 123345666888899999999999999975
|
| >1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=156.70 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=112.9
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCC---CeeEEE-EEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYP---GRIWLE-QRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g---grirv~-Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
.++.++.|+||+++||++++|+++||+|+|.++++++++..++ +..... .++.. .+...+++++++ .+
T Consensus 3 ~~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~v~~----~~--- 74 (148)
T 1t17_A 3 RHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFS-FLREKFATRVRR----DK--- 74 (148)
T ss_dssp EEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTT-SSCCEEEEEEEE----ET---
T ss_pred EEEEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEEEEec-ceeEEEEEEEEE----cC---
Confidence 5889999999999999999999999999999999999975321 222111 22222 122333444433 22
Q ss_pred CCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 171 SDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 171 ~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
+.++|.|++++|+|+.+.|.|++++.+ ++|+|+|+++++++.+++..++..+++..+..+++++++||++.+.
T Consensus 75 ~~~~i~~~~~~G~f~~~~g~w~f~~~~--~gt~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~r~~~~~~ 147 (148)
T 1t17_A 75 DARSIDVSLLYGPFKRLNNGWRFMPEG--DATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHG 147 (148)
T ss_dssp TTCEEEEEESSTTSSCEEEEEEEEEET--TEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEECCCChhccEEEEEEEECC--CCeEEEEEEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 235999999999999999999999975 4599999999999999999999999999999999999999998653
|
| >3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-17 Score=155.73 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=111.6
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCee--EEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRI--WLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggri--rv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
..+++.++.|+||+++||++|+|+++||+|+|.+.++++++. +++.. +++ .+...+ .+.+.++++.+ +
T Consensus 4 M~~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~-~~~~~~~~~~-~~~~G~-~~~~~s~~~~~-------~ 73 (172)
T 3tfz_A 4 MRHVEHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEE-GQGYQVVRLH-VDVAGE-INTWTSRRDLD-------P 73 (172)
T ss_dssp CEEEEEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEE-ETTEEEEEEE-EEETTE-EEEEEEEEEEE-------T
T ss_pred CcEEEEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEec-CCCEEEEEEE-EecCCE-EEEEEEEEEEe-------C
Confidence 457999999999999999999999999999999999999976 44433 333 332222 23333333322 3
Q ss_pred CCceEEEEEE--ccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc-------------cHHHHHHHHHhCHHHHHHH
Q 004764 171 SDRELYFSMV--DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF-------------PAIFLERIIRSDLPVNLQA 235 (732)
Q Consensus 171 ~~rrI~F~~v--eGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi-------------P~~Lv~~~ir~~L~~~L~A 235 (732)
..++|.|+++ .|+|+.+.|.|++++.+ +++|+|+|.++++++.++ +..++.+++.+++..+|.+
T Consensus 74 ~~~~i~~~~~~~~gpf~~~~g~w~f~~~~-~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~ 152 (172)
T 3tfz_A 74 ARRVIAYRQLETAPIVGHMSGEWRAFTLD-AERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNA 152 (172)
T ss_dssp TTTEEEEEEEECCTTEEEEEEEEEEEEEE-TTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeCCCChhhcEEEEEEEECC-CCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHH
Confidence 4678999999 57899999999999975 578999999998876544 3457899999999999999
Q ss_pred HHHHHHhhcc
Q 004764 236 LACRAERSFG 245 (732)
Q Consensus 236 Lk~raEr~~~ 245 (732)
||++||+...
T Consensus 153 lk~~aE~~~~ 162 (172)
T 3tfz_A 153 VLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998643
|
| >3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=157.23 Aligned_cols=141 Identities=16% Similarity=0.266 Sum_probs=111.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCe--eEEE-EEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR--IWLE-QRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggr--irv~-Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
+++.++.|+||+++||++++|+++||+|+|.++++++++. +++. ++++ +++..++ ...++.+.+++ +.
T Consensus 4 ~v~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~-~~~~~~~rl~~~~~~~G~-~~~~ts~~~~d-------~~ 74 (159)
T 3tl1_A 4 HTDNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGR-DDDKVTFRLTMHPDADGK-VWSWVSERVAD-------PV 74 (159)
T ss_dssp EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEE-CSSEEEEEEEECCCTTSC-CCEEEEEEEEE-------TT
T ss_pred eeEEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEec-CCCEEEEEEEEEeccCce-EEEEEEEEEEc-------CC
Confidence 5899999999999999999999999999999999999986 4443 3332 1222222 12223333332 45
Q ss_pred CceEEEEEE-ccccceeeEEEEEEecCCCCeeEEEEEE--EEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhccc
Q 004764 172 DRELYFSMV-DGDFKKFEGKWSIKSGTRSSTTTLSYEV--NVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGW 246 (732)
Q Consensus 172 ~rrI~F~~v-eGDfk~f~GsW~Lepl~~g~gT~LtY~l--~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~~ 246 (732)
.++|+|+++ +|+|+.+.|.|++++.+ +||+|+|.+ ++.|+.|++..++.+++..+++..|.+||+++|+..++
T Consensus 75 ~~~I~~~~~~~gPf~~l~g~W~f~p~~--~gt~V~~~~df~~~~~~p~~~~~~~~~~~~~~~~~L~~lK~~~E~~~~~ 150 (159)
T 3tl1_A 75 TRTVRAQRVETGPFQYMNIVWEYAETA--EGTVMRWTQDFAMKPDAPVDDAWMTDNINRNSRTQMALIRDRIEQAAGE 150 (159)
T ss_dssp TTEEEEEESSCTTEEEEEEEEEEEEET--TEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEccCCChhhccCEEEEEECC--CCEEEEEEEEEEecCCCCCCHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence 779999988 89999999999999985 378888764 56666888888899999999999999999999987655
|
| >3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=155.45 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=111.7
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEE---Eeeee-eEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQ---RGLQR-ALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Q---vg~~~-il~~~~~arvvLdv~E~~~~ 169 (732)
.+++.++.|+||+++||++|+|+++||+|+|.+.++++++. +++..++.- ....+ ...| +.+.+++
T Consensus 3 ~~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~-~~~~~~~~l~~~~~~~G~~~~~--ts~~~~d------- 72 (169)
T 3tvq_A 3 ARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQ-DGDGFDFRLKTRPDANGRVWEW--VSHRVPD------- 72 (169)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEE-ETTEEEEEEEECCCTTSCCCEE--EEEEEEE-------
T ss_pred CeEEEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEec-CCCEEEEEEEEEecCCCeEEEE--EEEEEEc-------
Confidence 46899999999999999999999999999999999999986 455433221 11222 2222 3333332
Q ss_pred CCCceEEEEEE-ccccceeeEEEEEEecCCCCeeEEEE--EEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhccc
Q 004764 170 ASDRELYFSMV-DGDFKKFEGKWSIKSGTRSSTTTLSY--EVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGW 246 (732)
Q Consensus 170 ~~~rrI~F~~v-eGDfk~f~GsW~Lepl~~g~gT~LtY--~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~~ 246 (732)
+..++|.|+++ .|+|+.+.|.|+++|.+ ++|+|+| ++++.|+.+++..++.+++..+++..|.+||+++|+..++
T Consensus 73 ~~~~~I~~~~l~~gPf~~~~g~W~f~p~~--~gt~V~~~~df~~~~~~p~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~ 150 (169)
T 3tvq_A 73 KGSRTVRAHRVETGPFAYMNLHWTYRAVA--GGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHRE 150 (169)
T ss_dssp GGGTEEEEEESSCTTEEEEEEEEEEEEET--TEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCChhheeeEEEEEECC--CCEEEEEEEEEEecCCCcccHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Confidence 34679999875 78999999999999975 3488888 5566677889999999999999999999999999987655
Q ss_pred cc
Q 004764 247 NQ 248 (732)
Q Consensus 247 ~~ 248 (732)
-.
T Consensus 151 ~~ 152 (169)
T 3tvq_A 151 GQ 152 (169)
T ss_dssp HC
T ss_pred cC
Confidence 44
|
| >2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-16 Score=139.58 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=107.4
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
.++.++.|+||++.||++|+|+++|++|+|.+.+++++...++|....+...... +.. .....+.+. .++++
T Consensus 3 ~~~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~~~~~~g-~~~----~~~~~~~~~---~~~~~ 74 (147)
T 2d4r_A 3 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMG-KKV----RWLEEEEWD---DENLR 74 (147)
T ss_dssp EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETT-EEE----EEEEEEEEE---TTTTE
T ss_pred eEEEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEEEEEeCC-ceE----EEEEEEEEc---CCCcE
Confidence 5889999999999999999999999999999999999875333322222222111 111 122233333 24689
Q ss_pred EEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH----HHHHhCHHHHHHHHHHHHHhh
Q 004764 175 LYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE----RIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 175 I~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~----~~ir~~L~~~L~ALk~raEr~ 243 (732)
|.|++++|+|+.+.|.|+|++.+ ++|+|+|++++++..+++..++. ..+++.+..+|.+||++||+.
T Consensus 75 i~~~~~~g~~~~~~~~~~~~~~~--~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~ 145 (147)
T 2d4r_A 75 NRFFSPEGDFDRYEGTWVFLPEG--EGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA 145 (147)
T ss_dssp EEEEEEEESCSEEEEEEEEEECS--SSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccCChhheEEEEEEEECC--CCcEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999974 45999999999999888877666 566699999999999999985
|
| >3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=144.77 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=103.2
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.++.|+||+++||++++|+++||+|+|+|.+++++.+ +..+.......|.....|..+++. ..++++|.|+
T Consensus 4 ~~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~--~~~~~~~~~~~G~~~~~~~~~v~e---~~p~~~i~~~ 78 (155)
T 3ggn_A 4 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDD--KRSRWTVEAPAPLGTVSWEAELTA---DEPGKRIAWR 78 (155)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSS--SEEEEEEECCTTTCEEEEEEEEEE---EETTTEEEEE
T ss_pred cEEEEEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecC--CeeEEEEEecCCcceEEEEEEEEE---ecCCCEEEEE
Confidence 46899999999999999999999999999999999998743 333333232234123567776432 2467899999
Q ss_pred EEecCCcceeEEEEEEEc-CCCeEEEEEEEEEEeccC--ccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 424 QVEGDFDSFQGKWLFEQL-GSHHTLLKYSVESKMQKN--SLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~-gdG~TrVty~v~~ep~~d--~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.++|++..+.|.|+|++. ++++|+|++.+++++.++ +.+...+++.+..+.+.+.|+.||+.+|..
T Consensus 79 ~~~g~~~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~ 147 (155)
T 3ggn_A 79 SLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELG 147 (155)
T ss_dssp ECTTCSSCEEEEEEEEECSSSSCEEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCcceEEEEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 999998889999999998 466899999999997531 112344566678888999999999999975
|
| >3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=136.57 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=107.2
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCc----ccccCcCCcEEEEEEeeCCEEEEEE--Eecccee-EEEEEEEEEEEEEee
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYET----LPEIVPNLAISKILSRENNKVRILQ--EGCKGLL-YMVLHARVVMDICEQ 415 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~----yPef~P~V~ssrVLer~~g~~rv~q--~g~~gll-~~~~~~rvvLdv~e~ 415 (732)
...++.++.|+||+++||++|+|+++ ||+|+|+ ...+++..+... .+..+.. ...|+++++++ .
T Consensus 6 ~i~v~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~------~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~---~ 76 (161)
T 3p9v_A 6 SIELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKL------VDLGNNAYRWEMEKVGVDKHAIQSVYACTYHAD---K 76 (161)
T ss_dssp EEEEEEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE------EEEETTEEEEEECCBSSGGGCBCCEEEEEEEEE---T
T ss_pred EEEEEEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE------EEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEc---C
Confidence 36789999999999999999999999 7777775 223344322211 1222211 12677775443 3
Q ss_pred CCCeEEEEEEecCC-cceeEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 416 HEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 416 ~~rrIsf~~veGdf-k~f~G~W~Lep~gdG~TrVty~v~~ep~~d-~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
++++|.|++++|+| +.+.|.|+|+|.++|.|+|+|.+++++... ..+...++..++.+.+..++++|.+||++.|-+
T Consensus 77 ~~~~I~~~~~~g~~~~~l~g~w~f~p~~~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~~~ 155 (161)
T 3p9v_A 77 EAGKITWSPIKGEGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKKAFLE 155 (161)
T ss_dssp TTTEEEEEECTTSTTEEEEEEEEEEESSSSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCEEEEEEecCccceeEEEEEEEEECCCCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999 899999999999988899999999987521 235567899999999999999999999998765
|
| >2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-14 Score=132.05 Aligned_cols=140 Identities=11% Similarity=0.153 Sum_probs=104.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC---EEEEEEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g---~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
..++.++.|+||+++||++|+|+++||+|+|.++++++++..++ .++.. ....|. ....++ ...+++++++
T Consensus 2 ~~v~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~-~~~~G~---~~~e~i--~~~d~~~~~~ 75 (151)
T 2le1_A 2 ATLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVF-GAGTEE---ELVERL--VERDESARRL 75 (151)
T ss_dssp CEEEEEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEE-SSSSSS---CEEEEE--EEEETTTTEE
T ss_pred ceEEEEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEE-EeCCCC---EEEEEE--EEEeCCCCEE
Confidence 46889999999999999999999999999999999999875422 23322 222232 122221 1222346899
Q ss_pred EEEEEecC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 421 SFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 421 sf~~veGd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
.|+.+.|+ +..+.+.|+|++.++++|+|+|...|++.+ .++....+. +++..+...|++||+++|+...
T Consensus 76 ~~~~~~g~~~~~~~~~~~~l~~~~~~gt~v~w~~~f~~~p-~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~~~ 146 (151)
T 2le1_A 76 VYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFDCSP-ETARELESV-IGDGVFAVGLNALAERYGRLEH 146 (151)
T ss_dssp EEEEEECSSSEEEEEEEEEEEESSSSCEEEEEEEEEEECH-HHHHHHHHH-TTTTHHHHHHHHHHHHTTTTSC
T ss_pred EEEEecCCCCceeEEEEEEEEECCCCcEEEEEEEEEEecC-CCCCHHHHH-HHHHHHHHHHHHHHHHhhcccc
Confidence 99999974 668899999999766789999999998610 234555667 8889999999999999987643
|
| >3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=130.63 Aligned_cols=136 Identities=15% Similarity=0.290 Sum_probs=105.8
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.++.|+||+++||++|+|+++||.|+|.+.++++++. |.++.... ..|. ....++ +...+.+++++|+
T Consensus 2 ~~v~~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~G--G~vR~~~~-~~G~---~~~Erl--~~~D~~~~~~~y~ 73 (146)
T 3f08_A 2 AHTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTEG--GRVRHLAN-PDGE---TIIERL--EVFNDKERYYTYS 73 (146)
T ss_dssp CEEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEGG--GTEEEEEC-TTSC---EEEEEE--EEEETTTTEEEEE
T ss_pred CEEEEEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeCC--CeEEEEEe-CCCC---EEEEEE--EEEeCCCCEEEEE
Confidence 45889999999999999999999999999999999998853 54543222 2342 223332 2222346899999
Q ss_pred EEecC--CcceeEEEEEEE-cCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 424 QVEGD--FDSFQGKWLFEQ-LGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 424 ~veGd--fk~f~G~W~Lep-~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
.++|+ ++.+.+.|+|.| .++|+|+|+|...|+|.+ +.+..+.+++...+...|++|++++|...
T Consensus 74 iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p~g---~~~~~~~~~~~~~~~~~L~~Lk~~~e~~~ 140 (146)
T 3f08_A 74 IMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVA---VSDEEAINLVHGIYSDGLKALQHAFLDLE 140 (146)
T ss_dssp EEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEESS---SCHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred EecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEeCC---CCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99986 578999999999 567789999999999832 45667888899999999999999998764
|
| >2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=124.21 Aligned_cols=145 Identities=12% Similarity=0.114 Sum_probs=102.9
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
.++.++.|+||+++||++|+|+++||+|+|.|.+++++. ++..+.......+.....+..++++. ...+++++.+..
T Consensus 4 ~i~~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (162)
T 2pcs_A 4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIG--EDKYKADLQIGIAAVKGKYDAIIEVT-DIKPPYHYKLLV 80 (162)
T ss_dssp EEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEE--TTEEEEEEEECCGGGCEEEEEEEEEE-EEETTTEEEEEE
T ss_pred EEeeEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeC--CCeEEEEEEEEeeeEEEEEEEEEEEE-ecCCCcEEEEEE
Confidence 588899999999999999999999999999998888763 45444333222222223444443321 113567877765
Q ss_pred Ee---cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 425 VE---GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 425 ve---Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d-~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
.. +++..+.+.|+|++.++++|+|+|.+++++.+. ..++..++..+.++.+...++.|++++|+...+
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~~~ 152 (162)
T 2pcs_A 81 NGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSKQE 152 (162)
T ss_dssp EEEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EecCCCccEEEEEEEEEEecCCCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 42 234467999999997667899999988887431 224567888888999999999999999975444
|
| >3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-13 Score=126.36 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=106.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+++.++.|+||+++||++|+|+++|++|+|.+.++++++ ||.+|....+.... +...+.++. +.+++
T Consensus 3 ~v~~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~---GG~vR~~~~~~G~~--------~~Erl~~~D--~~~~~ 69 (146)
T 3f08_A 3 HTTTSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTE---GGRVRHLANPDGET--------IIERLEVFN--DKERY 69 (146)
T ss_dssp EEEEEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEG---GGTEEEEECTTSCE--------EEEEEEEEE--TTTTE
T ss_pred EEEEEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeC---CCeEEEEEeCCCCE--------EEEEEEEEe--CCCCE
Confidence 588999999999999999999999999999999998873 36665443322211 111222222 35789
Q ss_pred EEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 175 LYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 175 I~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++|++++|+ ++.|.|.|+|.|...++||.|+|.+.++| ..+....+..+++......|++||+++|.+
T Consensus 70 ~~y~iv~g~~~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p-~g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~ 139 (146)
T 3f08_A 70 YTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTP-VAVSDEEAINLVHGIYSDGLKALQHAFLDL 139 (146)
T ss_dssp EEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEE-SSSCHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred EEEEEecCCCceeEEEEEEEEEEecCCCcEEEEEEEEEEe-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999997 69999999999932367899999999999 445566778889999999999999998864
|
| >2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-14 Score=130.92 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=103.7
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCC--CeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYP--GRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g--grirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
+|+.++.|+||+++||++|+|+++|++|+|.+++++++...++ |.++.+...... .....+.++. +.+
T Consensus 3 ~v~~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G~--------~~~e~i~~~d--~~~ 72 (151)
T 2le1_A 3 TLRRSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGAGTEE--------ELVERLVERD--ESA 72 (151)
T ss_dssp EEEEEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESSCTTSTTCEEEESSSSSS--------CEEEEEEEEE--TTT
T ss_pred eEEEEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECCCCCCCCeEEEEEeCCCC--------EEEEEEEEEe--CCC
Confidence 5889999999999999999999999999999999998764211 233332111110 1112223332 346
Q ss_pred ceEEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEec-CCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 173 RELYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIP-RLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 173 rrI~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P-~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
+++.|++++|+ |+.+.+.|+|++.+ +++|+|+|..+++| ..+++...+. +++..+...|++||+.+|+.
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~~~l~~~~-~~gt~v~w~~~f~~~p~~~~~~~~~-~~~~~~~~~L~~Lk~~~e~~ 144 (151)
T 2le1_A 73 RRLVYTMPDPPFPITNHRAVLEVVPRD-DRHCTVVWTAMFDCSPETARELESV-IGDGVFAVGLNALAERYGRL 144 (151)
T ss_dssp TEEEEEEEECSSSEEEEEEEEEEEESS-SSCEEEEEEEEEEECHHHHHHHHHH-TTTTHHHHHHHHHHHHTTTT
T ss_pred CEEEEEEecCCCCceeEEEEEEEEECC-CCcEEEEEEEEEEecCCCCCHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 89999999985 78999999999953 57899999999998 3455566666 78899999999999998874
|
| >3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-13 Score=127.20 Aligned_cols=139 Identities=9% Similarity=0.071 Sum_probs=98.5
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeE-EEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW-LEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrir-v~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
..|+.++.|+||+++||++++|+++||+|+|.+.+++++. +++.+ ....+. +...+.++ ..+++.. ++
T Consensus 4 ~~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~---~~~~~~~~~~~~-G~~~~~~~----~~v~e~~---p~ 72 (155)
T 3ggn_A 4 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLD---DKRSRWTVEAPA-PLGTVSWE----AELTADE---PG 72 (155)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECS---SSEEEEEEECCT-TTCEEEEE----EEEEEEE---TT
T ss_pred cEEEEEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEec---CCeeEEEEEecC-CcceEEEE----EEEEEec---CC
Confidence 4689999999999999999999999999999999998874 23322 112211 10112222 2334443 36
Q ss_pred ceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH----HHHHHHhCHHHHHHHHHHHHHhh
Q 004764 173 RELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF----LERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 173 rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L----v~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++|.|++++|++..+.|.|++++.+.+++|+|+|.++.+|...+...+ ...+.++.+...|+.+|+.+|..
T Consensus 73 ~~i~~~~~~g~~~~~~g~~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~l~r~k~~~e~~ 147 (155)
T 3ggn_A 73 KRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELG 147 (155)
T ss_dssp TEEEEEECTTCSSCEEEEEEEEECSSSSCEEEEEEEEEC----------------CHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCcceEEEEEEEECCCCCceEEEEEEEEECCCcHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 899999999998899999999997435689999999999877554433 45567888899999999999986
|
| >3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-13 Score=126.54 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=99.1
Q ss_pred ccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEe--eCCEEEEEEEeccceeEEEEEEEEEEEEEee
Q 004764 338 ENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR--ENNKVRILQEGCKGLLYMVLHARVVMDICEQ 415 (732)
Q Consensus 338 e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer--~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~ 415 (732)
.++..+..++.+|.|+|||++||++|+|+++||+|.|.|.++++... .|...++ +...+. .+.+ ++ ....
T Consensus 12 ~~g~~~~~i~~si~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~~G~~~~G~~~~~--~~~~~~-~~~~--~v---~~~~ 83 (155)
T 3ijt_A 12 QMGRGSMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKM--KMEDMP-ELAF--TL---VEVR 83 (155)
T ss_dssp ---CCCEEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEE--EETTSC-CEEE--EE---CCCB
T ss_pred ccCCCcEEEEEEEEEcCCHHHHHHHHhCcccccccchhhEeeeccCCCCCCCEEEE--EeCCCC-cEEE--EE---EEEe
Confidence 47888899999999999999999999999999999999988875321 1223332 222231 1222 21 1224
Q ss_pred CCCeEEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH-HHHHHHhhHHHHHHHHHHHHHh
Q 004764 416 HEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI-MEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 416 ~~rrIsf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~l-v~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+++++.|+..- ++..+.+.|+|++.++|+|+|++...|.-. .+.+..+ +.+.+..+++..|++||++||+
T Consensus 84 p~~~~~~~~~~-p~~~~~~~h~l~p~~~ggTrvt~~~~~~G~--~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~ 154 (155)
T 3ijt_A 84 ENQCFSDLTAT-PFGNVLFEHEILENPDGTISLRHSVSLTDS--DTTEEALAFLKQIFADVPESVGKLKQILET 154 (155)
T ss_dssp TTTEEEEEEEE-TTEEEEEEEEEEECTTSCEEEEEEEEESCC--SCCHHHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred CCcEEEEEEec-CCeEEEEEEEEEEcCCCcEEEEEEEEEECC--CcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66889997543 455778999999987788999999988521 1112222 4578999999999999999986
|
| >3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=126.76 Aligned_cols=158 Identities=15% Similarity=0.259 Sum_probs=118.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
+..+|+|+.+.+.+. ...+++++.|+++++.||++|.|.+.+++|.|.+.++++|+. +++...+++.-... |...
T Consensus 10 ~~~gv~v~~~~~~~~~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~~~~~i~y~~~~~p---~p~~ 85 (189)
T 3qsz_A 10 DAEGIKVYVRNVEGSPLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKA-TDTEQYHYLDNSAP---WPVS 85 (189)
T ss_dssp EETTEEEEEECCTTCSSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-CSSEEEEEEEECCS---SSCC
T ss_pred cCCCEEEEEEeCCCCCeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee-cCCceEEEEEeecC---CCcC
Confidence 346899999998775 577999999999999999999999999999999999999997 66655455442211 0001
Q ss_pred EE-EEEEEEEeecCCCCceEEEEEEccc-----------cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 AR-VVLDLQELIHSASDRELYFSMVDGD-----------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 ar-vvLdv~E~~~~~~~rrI~F~~veGD-----------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
-| .++-..-... .++.+.+...... ++.+.|.|.|+| + +++|.|+|.+.++|++++|.++++.+
T Consensus 86 ~RD~v~~~~~~~~--~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~-~~~t~vt~~~~~dp~G~iP~~lvn~~ 161 (189)
T 3qsz_A 86 NRDGVYHFTYEKA--GDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-D-ADGVDVTYQMHASPGGSIPSWLANQT 161 (189)
T ss_dssp CEEEEEEEEEEEC--TTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-C-SSSEEEEEEEEECSCSSSCHHHHHHT
T ss_pred CcceEEEEEEEEC--CCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-C-CCeEEEEEEEEeCCCCCCCHHHHHHH
Confidence 11 1111111111 1235544443321 477889999999 5 57899999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHhh
Q 004764 225 IRSDLPVNLQALACRAERS 243 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr~ 243 (732)
+++.++..|++||+++++-
T Consensus 162 ~~~~~~~~l~~L~k~~~~~ 180 (189)
T 3qsz_A 162 VVETPFGTLKALRSHLRQA 180 (189)
T ss_dssp TTHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999864
|
| >2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-12 Score=119.51 Aligned_cols=139 Identities=12% Similarity=0.179 Sum_probs=99.9
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.++.|+||+++||++++|+++||+|+|++.+++ + .++..+.......+.....+..++++. ...++++|.|.
T Consensus 13 m~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~i~~~ 88 (157)
T 2ns9_A 13 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-V--EDGSFTIELRLSLGPLRGDARVRASFE-DLEKPSKATVK 88 (157)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-E--ETTEEEEEEEEESSSSEEEEEEEEEEE-EEETTTEEEEE
T ss_pred EEEeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-E--CCCEEEEEEEEEEcceeEEEEEEEEEE-ecCCCcEEEEE
Confidence 4799999999999999999999999999999997777 3 455554433222222223444443321 11366888886
Q ss_pred E-Eec---CCcceeEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 424 Q-VEG---DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 424 ~-veG---dfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d-~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
. ..| ++. +.+.|+|++.+ ++|+|+|..++++.+. ..+...++..++++.+...++.||+++|+
T Consensus 89 ~~~~~~~~~~~-~~~~~~l~~~~-~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~ 156 (157)
T 2ns9_A 89 GSGRGAGSTLD-FTLRFAVEPSG-GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE 156 (157)
T ss_dssp EEEECSSEEEE-EEEEEEEEEET-TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEecCCCccEE-EEEEEEEEeCC-CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 333 344 68999999987 6799999988876421 23456688888999999999999999875
|
| >3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=128.02 Aligned_cols=143 Identities=16% Similarity=0.225 Sum_probs=106.0
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEE-EEEecCCC---CeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACS-GRIPCPYP---GRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~S-eVLe~~~g---grirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
+++.++.|+||+++||++|+|+++| .|+|.+.+| ++++..++ |.+|.. | .. + ...+.++. +
T Consensus 3 ~v~~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~--g--g~--v------~Erl~~~D--~ 67 (160)
T 3p51_A 3 KVYNSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL--N--GE--F------LDTLIAYS--E 67 (160)
T ss_dssp EEEEEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE--T--TT--E------EEEEEEEE--T
T ss_pred EEEEEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE--C--CE--E------EEEEEEEc--C
Confidence 5889999999999999999999999 999999998 88754222 345544 3 11 1 11222332 4
Q ss_pred CCceEEEEEEccc-------cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 171 SDRELYFSMVDGD-------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 171 ~~rrI~F~~veGD-------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
.+++++|++++|+ ++.|.|.|+|.|.+.+++|.|+|.+.++|.. .+...+++.....+|++|++++|+.
T Consensus 68 ~~~~~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~----~~~~~~~~~~~~~~L~~Lk~~~e~~ 143 (160)
T 3p51_A 68 IERRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS----TEAVEYMNTVYRSLLADLAAEFTSE 143 (160)
T ss_dssp TTTEEEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC----SHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCcEEEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH----HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999996 4689999999997535799999999999974 2788899999999999999999987
Q ss_pred ccccccccccccc
Q 004764 244 FGWNQKIPMIKNS 256 (732)
Q Consensus 244 ~~~~~~~~~~~~~ 256 (732)
.....++.++|.|
T Consensus 144 ~~~~~~~~~~~~~ 156 (160)
T 3p51_A 144 SRRSEWIDQLEHH 156 (160)
T ss_dssp TCC----------
T ss_pred cccchHHHHhhhc
Confidence 6666777777654
|
| >3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-12 Score=122.23 Aligned_cols=140 Identities=11% Similarity=0.213 Sum_probs=101.6
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeE-EE-E--EeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW-LE-Q--RGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrir-v~-Q--vg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
+++.++.|+||+++||++|+|+++|+.+.|.+...+.. ++|..+ .. . +|...+ .-.++++++++ +
T Consensus 8 ~v~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~---~~~~~~~~~a~l~vg~~~~-~~~~~s~~~~~-------~ 76 (161)
T 3p9v_A 8 ELNRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDL---GNNAYRWEMEKVGVDKHAI-QSVYACTYHAD-------K 76 (161)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEE---ETTEEEEEECCBSSGGGCB-CCEEEEEEEEE-------T
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEc---CCCceEEEEEEEeeeeEEE-EEEEEEEEEEc-------C
Confidence 58899999999999999999999944444444433222 334221 11 1 222211 11334443332 3
Q ss_pred CCceEEEEEEcccc-ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHH---HHHHHHHhCHHHHHHHHHHHHHhhccc
Q 004764 171 SDRELYFSMVDGDF-KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAI---FLERIIRSDLPVNLQALACRAERSFGW 246 (732)
Q Consensus 171 ~~rrI~F~~veGDf-k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~---Lv~~~ir~~L~~~L~ALk~raEr~~~~ 246 (732)
.+++|.|++++|+| +.+.|.|+++|.+ +++|+|+|++++++++|++.+ ++..++.+....++++..+||++.+.+
T Consensus 77 ~~~~I~~~~~~g~~~~~l~g~w~f~p~~-~g~t~V~~~~~~e~~~pl~~ll~~~~~~~~~~~~~~~v~af~~ra~~~~~~ 155 (161)
T 3p9v_A 77 EAGKITWSPIKGEGNGVVSGSWTLSAKG-DNATAVKFQTSAELTVPLPSLLKLAISPVIKHEFNSLVDTYMANLKKAFLE 155 (161)
T ss_dssp TTTEEEEEECTTSTTEEEEEEEEEEESS-SSCEEEEEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCEEEEEEecCccceeEEEEEEEEECC-CCeEEEEEEEEEEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999998 9999999999975 456899999999999777654 578888999999999999999987654
|
| >2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=115.84 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=100.8
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEE-EEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLE-QRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~-Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+++.++.|+||+++||++|+|+++|++|+|.+.+++++. ++..+.. ..... .+...+.. ...+.+.. +++
T Consensus 4 ~i~~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~---~~~~~~~~~~~~g-~~~~~~~~--~~~~~~~~---~~~ 74 (162)
T 2pcs_A 4 NGNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIG---EDKYKADLQIGIA-AVKGKYDA--IIEVTDIK---PPY 74 (162)
T ss_dssp EEEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEE---TTEEEEEEEECCG-GGCEEEEE--EEEEEEEE---TTT
T ss_pred EEeeEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeC---CCeEEEEEEEEee-eEEEEEEE--EEEEEecC---CCc
Confidence 488999999999999999999999999999999888763 3332211 11111 11122222 22333433 246
Q ss_pred eEEEEEE--c-cccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc---cHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 174 ELYFSMV--D-GDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 174 rI~F~~v--e-GDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi---P~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
++.|+.. . +.+..+.+.|+|++.+ +++|+|+|++++++..++ +..++..+.++.+...+++|++++|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~gT~v~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~~ 150 (162)
T 2pcs_A 75 HYKLLVNGEGGPGFVNAEGVIDLTPIN-DECTQLTYTYSAEVGGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKSK 150 (162)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEESS-SSEEEEEEEEEEEEESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEEEecCCCccEEEEEEEEEEecC-CCcEEEEEEEEEEECCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7777665 2 3466789999999964 478999999999887764 6678888889999999999999999743
|
| >3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=119.41 Aligned_cols=137 Identities=19% Similarity=0.237 Sum_probs=104.5
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEE-EEEEeeC----CEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAIS-KILSREN----NKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ss-rVLer~~----g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
|..++.++.|+|||+.||+++.|+++| .|+|.+.++ ++++.++ |.+|.. + +.+ ..+ ++...+.+
T Consensus 1 M~~v~~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~eg~~~~~vGsvR~~--g--g~v----~Er--l~~~D~~~ 69 (160)
T 3p51_A 1 MPKVYNSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVGGGGGYSVGARRLL--N--GEF----LDT--LIAYSEIE 69 (160)
T ss_dssp -CEEEEEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEESSCCTTCTTCEEEE--T--TTE----EEE--EEEEETTT
T ss_pred CCEEEEEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEecCCCCCCCCEEEE--C--CEE----EEE--EEEEcCCC
Confidence 346899999999999999999999999 999999888 8886653 334543 2 321 233 22223446
Q ss_pred CeEEEEEEecCC-------cceeEEEEEEEcC-CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 418 QEISFEQVEGDF-------DSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 418 rrIsf~~veGdf-------k~f~G~W~Lep~g-dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
++++|+.++|++ +.+.+.|+|.|.+ +|+|.|+|...|++.. .++..++...+...|++|++++|+.
T Consensus 70 ~~~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~------~~~~~~~~~~~~~~L~~Lk~~~e~~ 143 (160)
T 3p51_A 70 RRIMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS------TEAVEYMNTVYRSLLADLAAEFTSE 143 (160)
T ss_dssp TEEEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESC------SHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred cEEEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999865 4789999999986 7789999999999742 2677888889999999999999987
Q ss_pred hCCCCcc
Q 004764 490 EGDNSLA 496 (732)
Q Consensus 490 ~~~~~~~ 496 (732)
...+.++
T Consensus 144 ~~~~~~~ 150 (160)
T 3p51_A 144 SRRSEWI 150 (160)
T ss_dssp TCC----
T ss_pred cccchHH
Confidence 6554444
|
| >3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-11 Score=117.76 Aligned_cols=143 Identities=12% Similarity=0.153 Sum_probs=105.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccc--eeEEEEEEEEEEEEEeeCCCeEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG--LLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~g--ll~~~~~~rvvLdv~e~~~rrIs 421 (732)
..+.++..|++|+++||+++.|++.||+|.|+|.+++++++.++...+++..... +...-+...... ....++.+.
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~~~~~~i~y~~~~~p~p~~~RD~v~~~~~--~~~~~g~~~ 104 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKATDTEQYHYLDNSAPWPVSNRDGVYHFTY--EKAGDGAIT 104 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEECSSEEEEEEEECCSSSCCCEEEEEEEEE--EECTTSCEE
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEeecCCceEEEEEeecCCCcCCcceEEEEEE--EECCCCeEE
Confidence 5689999999999999999999999999999999999999865544444432211 111112222111 112234554
Q ss_pred EEEEecC-----------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 422 FEQVEGD-----------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 422 f~~veGd-----------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
+.....+ +..+.|.|.|+| ++++|.|+|...++|. +++|.++++.++.+.+..+|++|++++++..
T Consensus 105 i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~--G~iP~~lvn~~~~~~~~~~l~~L~k~~~~~~ 181 (189)
T 3qsz_A 105 VRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPG--GSIPSWLANQTVVETPFGTLKALRSHLRQAH 181 (189)
T ss_dssp EEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSC--SSSCHHHHHHTTTHHHHHHHHHHHHHHTC--
T ss_pred EEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 4433322 456789999999 8889999999999985 6799999999999999999999999999765
Q ss_pred C
Q 004764 491 G 491 (732)
Q Consensus 491 ~ 491 (732)
-
T Consensus 182 ~ 182 (189)
T 3qsz_A 182 L 182 (189)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=115.53 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=96.8
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecC--CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCP--YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~--~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
..+++.+|.|+|||++||++|+|+++|++|.|.+.+++. +.+ .|.+.++...+.. .+ ...+.++.
T Consensus 17 ~~~i~~si~I~Appe~VW~~ltD~~~~~~W~p~v~~~~~-~G~~~~G~~~~~~~~~~~-~~--------~~~v~~~~--- 83 (155)
T 3ijt_A 17 SMKFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISL-EGEFTTGQKGKMKMEDMP-EL--------AFTLVEVR--- 83 (155)
T ss_dssp CEEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEE-SSSSSTTCEEEEEETTSC-CE--------EEEECCCB---
T ss_pred cEEEEEEEEEcCCHHHHHHHHhCcccccccchhhEeeec-cCCCCCCCEEEEEeCCCC-cE--------EEEEEEEe---
Confidence 457999999999999999999999999999999988764 221 1223333222211 11 12233433
Q ss_pred CCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHH-HHHHHHhCHHHHHHHHHHHHHh
Q 004764 171 SDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIF-LERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 171 ~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~L-v~~~ir~~L~~~L~ALk~raEr 242 (732)
+++++.|+..- .+..+.+.|.|++.+ +++|+|+|...+....+.|..+ ..+.+..+++..|.+||++||+
T Consensus 84 p~~~~~~~~~~-p~~~~~~~h~l~p~~-~ggTrvt~~~~~~G~~~~~~~~~~~~~i~~~~~~~l~~LK~~aE~ 154 (155)
T 3ijt_A 84 ENQCFSDLTAT-PFGNVLFEHEILENP-DGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILET 154 (155)
T ss_dssp TTTEEEEEEEE-TTEEEEEEEEEEECT-TSCEEEEEEEEESCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred CCcEEEEEEec-CCeEEEEEEEEEEcC-CCcEEEEEEEEEECCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778886543 355778999999974 5789999999996554433333 3578999999999999999986
|
| >2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-10 Score=105.89 Aligned_cols=136 Identities=13% Similarity=0.169 Sum_probs=96.1
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEE-EEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLE-QRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~-Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
.+++.++.|+||++.||++|+|+++|++|+|.+.+++ +. ++..+.. ..+.. .+...+.. ...+.+.. ++
T Consensus 13 m~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~~---~~~~~~~~~~~~g-~~~~~~~~--~~~~~~~~---~~ 82 (157)
T 2ns9_A 13 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-VE---DGSFTIELRLSLG-PLRGDARV--RASFEDLE---KP 82 (157)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-EE---TTEEEEEEEEESS-SSEEEEEE--EEEEEEEE---TT
T ss_pred EEEeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-EC---CCEEEEEEEEEEc-ceeEEEEE--EEEEEecC---CC
Confidence 3699999999999999999999999999999998776 32 3433221 11111 11222222 22333433 24
Q ss_pred ceEEEEEE-cc---ccceeeEEEEEEecCCCCeeEEEEEEEEecCCC---ccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 173 RELYFSMV-DG---DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 173 rrI~F~~v-eG---Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p---iP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++|.|+.. .| +++ +.+.|+|++.+ ++|+|+|+.+++...+ +...++..+.++.+...+++||+++|+
T Consensus 83 ~~i~~~~~~~~~~~~~~-~~~~~~l~~~~--~gT~v~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~e~ 156 (157)
T 2ns9_A 83 SKATVKGSGRGAGSTLD-FTLRFAVEPSG--GGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE 156 (157)
T ss_dssp TEEEEEEEEECSSEEEE-EEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEEEEecCCCccEE-EEEEEEEEeCC--CcEEEEEEEEEEECcCHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77887643 33 355 78999999964 7899999998876654 455678899999999999999998874
|
| >1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=105.19 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=105.9
Q ss_pred EEEEEEEEEcCCHHHHHHHHh-ccCc-ccccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLt-DyE~-yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..++.++.|+||+++||+++. |+.+ +|.|+|.++++++++.++ |.++.+... .|.....+..+ ++...+....
T Consensus 3 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~-~G~~~~~~kEr--l~~~D~~~~~ 79 (157)
T 1tw0_A 3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITAN-EGDKTSFVLQK--VDAIDEANLG 79 (157)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEE-ETTEEEEEEEE--EEEEETTTTE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEee-CCCccceEEEE--EEEEeccCCE
Confidence 468899999999999999999 9985 699999999999998764 345544433 34322223444 2333356689
Q ss_pred EEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 420 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 420 Isf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
++|+.++|+ ++.+.+.|+|.|.++|+|.+++.+.|++.++...++..+. .....+..++++|.++.-+.
T Consensus 80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~ 153 (157)
T 1tw0_A 80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRD-DALAKGAGFFKAIEGYVLAN 153 (157)
T ss_dssp EEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 999999987 5688999999998777799999999998754434433333 45677889999999887654
|
| >2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.9e-10 Score=107.38 Aligned_cols=142 Identities=9% Similarity=0.105 Sum_probs=106.1
Q ss_pred EEEEEEEEEcCCHHHHHHHHh-ccCc-ccccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLt-DyE~-yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..++.++.|+||+++||+++. |+.+ +|.|+|.++++++++.++ |.++.+... .|.....+..++ +...+....
T Consensus 4 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~-~g~~~~~~kErl--~~~D~~~~~ 80 (158)
T 2qim_A 4 FTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFI-EGGESKYVLHKI--EAIDEANLG 80 (158)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEE-ETTEEEEEEEEE--EEEEGGGTE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEc-CCCcceeEEEEE--EEEecCCCE
Confidence 568899999999999999999 9996 599999999999998764 345544433 343212233442 333356689
Q ss_pred EEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 420 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 420 Isf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
++|+.++|+ ++.+.+.|+|.|.++|+|.++|.+.|++.++...++..+. .....+..++++|.++.-+.
T Consensus 81 ~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~ 154 (158)
T 2qim_A 81 YNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGK-AAKARGDAFFKAIESYLSAH 154 (158)
T ss_dssp EEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 999999987 5588999999998777799999999998754434433333 45677889999999887654
|
| >1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-10 Score=107.88 Aligned_cols=142 Identities=16% Similarity=0.275 Sum_probs=105.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHh-ccCc-ccccCc-CCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVP-NLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLt-DyE~-yPef~P-~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.|+||+++||+++. |+.+ +|.|+| .++++++++.++ |.++.+... .|.....+..+ ++...+...
T Consensus 3 ~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~-~G~~~~~~kEr--l~~~D~~~~ 79 (159)
T 1e09_A 3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG-EGSQYGYVKHK--IDSIDKENY 79 (159)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEEC-CSSSCEEEEEE--EEEEETTTT
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEec-CCCCceEEEEE--EEEEcCCCC
Confidence 468899999999999999999 9985 799999 679999998764 335544443 34221223344 233335668
Q ss_pred eEEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 419 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 419 rIsf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.++|+.++|+ ++.+.+.|+|.|.++|+|.++|.+.|++.++..+++.-+. .....+..++++|.++.-+.
T Consensus 80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~ 154 (159)
T 1e09_A 80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVK-AGKEKASNLFKLIETYLKGH 154 (159)
T ss_dssp EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 9999999986 4688999999998777899999999998654434433333 56778889999999887654
|
| >1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=105.24 Aligned_cols=141 Identities=10% Similarity=0.125 Sum_probs=105.1
Q ss_pred EEEEEEEEEcCCHHHHHHHHh-ccCc-ccccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMT-AYET-LPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLt-DyE~-yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..++.++.|+||+++||+++. |+.+ +|.|+|.++++++++.++ |.++.+... .|.....+..++ +...+....
T Consensus 3 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~-~G~~~~~~kErl--~~~D~~~~~ 79 (155)
T 1icx_A 3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAI-HDGHTSFVLHKL--DAIDEANLT 79 (155)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEE-SSSSEEEEEEEE--EEEEGGGTE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCCCCeEEEEEEe-cCCcceeEEEEE--EEEeccCCE
Confidence 468899999999999999999 9985 699999999999998764 345544433 343222234442 333356689
Q ss_pred EEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 420 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 420 Isf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
++|+.++|+ ++.+.+.|+|.|.++|+|.+++...|++.++. +++ ..-+.....+..++++|.++.-+.
T Consensus 80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~-~~~-~~~~~~~~~~~~~~k~ie~yll~~ 152 (155)
T 1icx_A 80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDV-LSE-TVRDQAKFKGLGLFKAIEGYVLAH 152 (155)
T ss_dssp EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSS-CCH-HHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCC-CCH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987 56889999999987667999999999987654 433 333345577888889998887543
|
| >3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-09 Score=106.91 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=106.1
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCC--CeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYP--GRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g--grirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
......|+||+++||+++.|+.+++.|.|.+++| .++..++ |.+|.+..+...... .+...+.+.. +..+
T Consensus 29 ~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~~G~p~~-----~vkErL~~~D--~~~~ 100 (183)
T 3rt2_A 29 STLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLKSGLPAT-----KSTEVLEILD--DNEH 100 (183)
T ss_dssp EEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEECCSSTTC-----EEEEEEEEEE--TTTT
T ss_pred EEEEEEEeCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeCCCCccc-----eEEEEEEEEE--CCCC
Confidence 3444599999999999999999999999999988 5543122 345544333220000 1112223333 4678
Q ss_pred eEEEEEEccc--cceeeEEEEEEecC-CCC-eeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 174 ELYFSMVDGD--FKKFEGKWSIKSGT-RSS-TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 174 rI~F~~veGD--fk~f~GsW~Lepl~-~g~-gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
.++|++++|+ ++.|.+..+|.|.+ .|+ +|.|+|...++|.-.....-...++..-...+|++|++.+|+++.
T Consensus 101 ~~sY~Iieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~~~~L~~L~~~~e~~~~ 176 (183)
T 3rt2_A 101 ILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQA 176 (183)
T ss_dssp EEEEEEEEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999997 69999999999974 344 799999999998766667778888999999999999999999754
|
| >1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-09 Score=104.62 Aligned_cols=158 Identities=9% Similarity=0.018 Sum_probs=113.5
Q ss_pred CCceEEEEEEecCc-ceeEEEEEEEe-cCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 79 QRKVHCEVEVVSWR-ERRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 79 e~~v~v~v~~v~~~-~rrV~asi~V~-AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
..+++|+.+...+. ...++++..|+ +|++.|+++|.|.+.+++|.+.+.++++++. ++ ...++.+-.... .+.
T Consensus 36 ~~~v~v~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~-~~-~~i~~~~~~~p~---p~~ 110 (214)
T 1ln1_A 36 TSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC-NG-ETVVYWEVKYPF---PMS 110 (214)
T ss_dssp ETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE-TT-EEEEEEEECCCT---TSC
T ss_pred CCCeEEEEeccCCCCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc-CC-CEEEEEEEEcCC---CCC
Confidence 46799999987655 56799999995 9999999999999999999999999999986 44 323333322110 000
Q ss_pred EE-EEE-EEEEeecCCCCceEE---EEEEc-------cc---cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHH
Q 004764 157 AR-VVL-DLQELIHSASDRELY---FSMVD-------GD---FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 157 ar-vvL-dv~E~~~~~~~rrI~---F~~ve-------GD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv 221 (732)
.| .++ ....... ..+..+. .+.++ .. .+.+.|.|.|+|.+ +++|.|+|.+.++|++++|.+++
T Consensus 111 ~RD~v~~~~~~~~~-~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~-~~~t~v~~~~~~Dp~G~iP~~l~ 188 (214)
T 1ln1_A 111 NRDYVYLRQRRDLD-MEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDG-KKGSKVFMYYFDNPGGQIPSWLI 188 (214)
T ss_dssp CEEEEEEEEEEEEC-STTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECS-SSSEEEEEEEEECCSSCCCHHHH
T ss_pred CceEEEEEEEEecc-cCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCC-CCceEEEEEEEECCCCcccHHHH
Confidence 00 111 1001111 1222222 22232 12 35578999999975 56899999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHhh
Q 004764 222 ERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 222 ~~~ir~~L~~~L~ALk~raEr~ 243 (732)
+.++++.++..|.+|++++++.
T Consensus 189 n~~~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 189 NWAAKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhHHHHHHHHHHHHhc
Confidence 9999999999999999999854
|
| >3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-09 Score=104.43 Aligned_cols=147 Identities=15% Similarity=0.214 Sum_probs=106.1
Q ss_pred CceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC---CEEEEEEEeccceeEEEEEEEEEEEEEeeC
Q 004764 340 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDICEQH 416 (732)
Q Consensus 340 ~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~---g~~rv~q~g~~gll~~~~~~rvvLdv~e~~ 416 (732)
+..+-....+..|+||+++||+++.||.+++.|.|.++++ +++.++ |.+|.+... .|........+ |+...+.
T Consensus 23 ~~~~~~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~-~G~p~~~vkEr--L~~~D~~ 98 (183)
T 3rt2_A 23 VESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLK-SGLPATKSTEV--LEILDDN 98 (183)
T ss_dssp STTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEEC-CSSTTCEEEEE--EEEEETT
T ss_pred CCCceEEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeC-CCCccceEEEE--EEEEECC
Confidence 3334455566699999999999999999999999999999 565422 334543332 34211122333 3333345
Q ss_pred CCeEEEEEEecC--CcceeEEEEEEEcC-CC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 417 EQEISFEQVEGD--FDSFQGKWLFEQLG-SH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 417 ~rrIsf~~veGd--fk~f~G~W~Lep~g-dG--~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
.+.++|+.++|+ ++.+.+..+|.|.+ +| +|.|.|...|++..+ ....-...++...+...|++|++.+|+...
T Consensus 99 ~~~~sY~Iieg~lp~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~~~g--~~~e~~~~~~~~i~~~~L~~L~~~~e~~~~ 176 (183)
T 3rt2_A 99 EHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEG--NTKEETCFFVEALIQCNLNSLADVTERLQA 176 (183)
T ss_dssp TTEEEEEEEEESCSCTTCEEEEEEEEEEETTEEEEEEEEEEEEECCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCcceeEEEEEEEEEEecCCCCCCEEEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 579999999985 66899999999976 55 699999999996432 334567777888889999999999998765
Q ss_pred C
Q 004764 492 D 492 (732)
Q Consensus 492 ~ 492 (732)
.
T Consensus 177 ~ 177 (183)
T 3rt2_A 177 E 177 (183)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=105.34 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=101.0
Q ss_pred ccCceeEEEEEEEEEcCCHHHHHHH-HhccCcccccCc-CCcEEEEEEee-C--CEEEEEEEeccceeEEEEEEEEEEEE
Q 004764 338 ENGGVHRCVVASITVKAPVSEVWNV-MTAYETLPEIVP-NLAISKILSRE-N--NKVRILQEGCKGLLYMVLHARVVMDI 412 (732)
Q Consensus 338 e~~g~~~~V~asI~I~APpE~VW~v-LtDyE~yPef~P-~V~ssrVLer~-~--g~~rv~q~g~~gll~~~~~~rvvLdv 412 (732)
+++..+..+..++.|+||+++||++ +.|+..+|.|+| .|+++++++.+ + |.++.+.....+.. ..+..++ +.
T Consensus 11 ~~~~~~~k~~~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~-~~~kErl--~~ 87 (166)
T 2i9y_A 11 EASSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEA-KVAKERI--EA 87 (166)
T ss_dssp CCSSSEEEEEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEE-EEEEEEE--EE
T ss_pred cccCCccEEEEEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCc-eEEEEEE--EE
Confidence 4677778999999999999999999 569999999999 89999998775 2 23444433333321 2334442 33
Q ss_pred EeeCCCeEEEEEEecC----CcceeEEEEEEEcCC-CeEEEEEEEEEEeccCc-cchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 413 CEQHEQEISFEQVEGD----FDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNS-LLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 413 ~e~~~rrIsf~~veGd----fk~f~G~W~Lep~gd-G~TrVty~v~~ep~~d~-~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
..+....++|+.++|+ ++.+.+.|+|.|.++ ++|.++|.+.|+...+. +-|..+ ...+..++++|.++.
T Consensus 88 iD~~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~~l 162 (166)
T 2i9y_A 88 VEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETL-----LQFCVEVSKEIDEHL 162 (166)
T ss_dssp EETTTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTHHH-----HHHHHHHHHHHHHHH
T ss_pred EeccCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHHHH-----HHHHHHHHHHHHHHH
Confidence 3356689999999998 468899999999743 37999999999875422 223222 245666777776665
Q ss_pred H
Q 004764 487 E 487 (732)
Q Consensus 487 E 487 (732)
-
T Consensus 163 ~ 163 (166)
T 2i9y_A 163 L 163 (166)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-09 Score=104.92 Aligned_cols=148 Identities=13% Similarity=0.194 Sum_probs=107.9
Q ss_pred ccCceeEEEEEEE--EEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEE
Q 004764 338 ENGGVHRCVVASI--TVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDIC 413 (732)
Q Consensus 338 e~~g~~~~V~asI--~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~ 413 (732)
.++.....+..+| .|+||+++||+++.||.+++.|.|.|++|++ +.++ |.+|.+.. ..|........+ |+..
T Consensus 44 ~h~p~~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eGdg~vGsVR~vt~-~~G~p~~~vkEr--L~~l 119 (205)
T 3oqu_A 44 QHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGDPEIGSLREVNV-KSGLPATTSTER--LELL 119 (205)
T ss_dssp CCCCCTTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CSSCCTTCEEEEEE-CTTSSCSEEEEE--EEEE
T ss_pred hcCCCCcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEe-eCCCCCCcEEEEEE-cCCCccceEEEE--EEEE
Confidence 3556667789999 9999999999999999999999999999975 4332 23454333 234211122333 3333
Q ss_pred eeCCCeEEEEEEecC--CcceeEEEEEEEcC-CC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 414 EQHEQEISFEQVEGD--FDSFQGKWLFEQLG-SH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 414 e~~~rrIsf~~veGd--fk~f~G~W~Lep~g-dG--~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.+..+.++|+.++|+ ++.|.+.++|.|.+ +| .|.+.+...+++.. .....-+..++...+...|++|++.+|+
T Consensus 120 Dde~~~~sYsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~--g~t~e~~~~~v~~v~~~gL~~L~~~~e~ 197 (205)
T 3oqu_A 120 DDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQ--GNTKDETCYFVEALIRCNLKSLADVSER 197 (205)
T ss_dssp ETTTTEEEEEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCT--TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCEEEEEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999985 66899999999987 45 68888878787642 2344567778888889999999999998
Q ss_pred hhC
Q 004764 489 REG 491 (732)
Q Consensus 489 ~~~ 491 (732)
...
T Consensus 198 ~~~ 200 (205)
T 3oqu_A 198 LAS 200 (205)
T ss_dssp HHH
T ss_pred hhh
Confidence 754
|
| >3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=102.94 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=109.4
Q ss_pred ceeEEEEE--EEecCHHHHHHHHhCccccccccccceEEEEEecC-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 93 ERRIKAEM--LVNADVDSVWNALTDYERLADFVPNLACSGRIPCP-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 93 ~rrV~asi--~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
...+..+| .|+||+++||++|.|+.+++.|.|.+++|++ +.. ..|.+|.+......... .+...+.+..
T Consensus 49 ~~k~~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eGdg~vGsVR~vt~~~G~p~~-----~vkErL~~lD-- 120 (205)
T 3oqu_A 49 ENQCTSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IGDPEIGSLREVNVKSGLPAT-----TSTERLELLD-- 120 (205)
T ss_dssp TTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CSSCCTTCEEEEEECTTSSCS-----EEEEEEEEEE--
T ss_pred CcEEEEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEe-eCCCCCCcEEEEEEcCCCccc-----eEEEEEEEEE--
Confidence 44699999 9999999999999999999999999998864 421 11345544332220000 1112223333
Q ss_pred CCCceEEEEEEccc--cceeeEEEEEEecCC-C-CeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 170 ASDRELYFSMVDGD--FKKFEGKWSIKSGTR-S-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 170 ~~~rrI~F~~veGD--fk~f~GsW~Lepl~~-g-~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
+..+.++|++++|+ ++.|.+.++|.|.+. + .+|.+.+...++|.-+.-..-...++......+|++|++.+|+++.
T Consensus 121 de~~~~sYsIieG~lpv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~p~g~t~e~~~~~v~~v~~~gL~~L~~~~e~~~~ 200 (205)
T 3oqu_A 121 DEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSERLAS 200 (205)
T ss_dssp TTTTEEEEEEEEESSSCTTCEEEEEEEEECCCC-CEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEecCcceeEEEEEEEEEEccCCCCceEEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46889999999997 699999999999752 2 2789999999988777777888889999999999999999998743
|
| >1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-08 Score=93.71 Aligned_cols=141 Identities=10% Similarity=0.060 Sum_probs=100.2
Q ss_pred eeEEEEEEEecCHHHHHHHHh-Cccc-cccccccceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 94 RRIKAEMLVNADVDSVWNALT-DYER-LADFVPNLACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLT-DYEr-lpeFiP~v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
..++.++.|+||+++||+++. |+.+ +|+|+|.++++++++..+ .|.+|.+.......+.+ +...+.... .
T Consensus 3 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~-----~kErl~~~D--~ 75 (157)
T 1tw0_A 3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSF-----VLQKVDAID--E 75 (157)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSSTTCEEEEEEEETTEEEE-----EEEEEEEEE--T
T ss_pred EEEEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCCCCeEEEEEeeCCCccce-----EEEEEEEEe--c
Confidence 468899999999999999999 9985 699999999999987532 23455443332211111 111222222 5
Q ss_pred CCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 171 SDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 171 ~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
..+.++|++++|| ++.|.+.|+|.|.+ +++|.+++.++.++... .|+.-+. ..+..+..++++|.+.+.++
T Consensus 76 ~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~-~~gs~v~w~~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~ 153 (157)
T 1tw0_A 76 ANLGYDYSIVGGTGLPESLEKLSFETKVVAGS-GGGSISKVTLKFHTKGDAPLSDAVRD-DALAKGAGFFKAIEGYVLAN 153 (157)
T ss_dssp TTTEEEEEEEECTTSCTTEEEEEEEEEEEECS-SSSEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEEEecCCCccceEEEEEEEEEEecC-CCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 7899999999998 78999999999964 35799999999988654 3343333 45667788888888876553
|
| >1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-08 Score=97.16 Aligned_cols=142 Identities=11% Similarity=0.078 Sum_probs=100.9
Q ss_pred eeEEEEEEEecCHHHHHHHHh-Cccc-cccccccceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 94 RRIKAEMLVNADVDSVWNALT-DYER-LADFVPNLACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLT-DYEr-lpeFiP~v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
..++.++.|+||+++||+++. |+.+ +|+|+|.++++++++..+ .|.++.+.......+.+. ...+.... .
T Consensus 3 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~-----kErl~~~D--~ 75 (155)
T 1icx_A 3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFV-----LHKLDAID--E 75 (155)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSSEEEE-----EEEEEEEE--G
T ss_pred EEEEEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCCCCeEEEEEEecCCcceeE-----EEEEEEEe--c
Confidence 468899999999999999999 9985 699999999999987532 234555433322111111 11222222 4
Q ss_pred CCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 171 SDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 171 ~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
..+.++|++++|| ++.|.+.|+|.|.+ +++|.+++.++.++....|....-+..+..+..++++|.+.+.++
T Consensus 76 ~~~~~~y~iieGd~~~~~~~~~~~~~~v~~~~-~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~ 152 (155)
T 1icx_A 76 ANLTYNYSIIGGEGLDESLEKISYESKILPGP-DGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAH 152 (155)
T ss_dssp GGTEEEEEEEEETTSCTTEEEEEEEEEEEECG-GGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEEEecCCCccceEEEEEEEEEEecC-CCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999999998 78999999999964 357999999999887654443333345667788888888876553
|
| >2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.9e-09 Score=100.62 Aligned_cols=130 Identities=14% Similarity=0.155 Sum_probs=85.2
Q ss_pred ceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCC--
Q 004764 341 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ-- 418 (732)
Q Consensus 341 g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r-- 418 (732)
+.|...+.+|+|++|+++||+++.|+++||+|+|+++++ +...++...+. .+..|. ..++ +..+...
T Consensus 24 ~~m~~~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~--~~~~~~~w~a~-~~p~G~----v~v~----~~~~~~~gv 92 (156)
T 2qpv_A 24 PVMQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGG--LEADGEDWIAK-GGPLGE----VRVN----FAPHNEFGV 92 (156)
T ss_dssp CCCCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTC--CEEETTEEEEE-CSSSCE----EEEE----ECCCCSSCB
T ss_pred CCccceEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhh--cccCCCcEEEe-ccCCCc----EEEE----EecCCCceE
Confidence 334567899999999999999999999999999999886 44555544332 122231 1222 1111211
Q ss_pred eEEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 419 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 419 rIsf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.+.|....+.. ...+.|++.+.++| |+|+|++...| +.+.+. + +.-...+...|+.||+++|.
T Consensus 93 ~d~~~~l~~g~-~~~~~~rv~p~g~G-TeV~~tl~~~p--g~~~~~--~-~~~~~~v~~dL~~LK~l~E~ 155 (156)
T 2qpv_A 93 IDHVVTLPDGL-KVYNALRVTPNGSG-TEVSFTLLRLE--GMTDED--F-EQDASAITADLEMLKSLLEA 155 (156)
T ss_dssp CCEEEECTTSC-EEEEEEEEEEETTE-EEEEEEEECCT--TCCHHH--H-HHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCCCc-EEEEEEEEEeCCCC-EEEEEEEecCC--CCChhh--h-hhhHHHHHHHHHHHHHHHhC
Confidence 23444433222 35678999998765 99999996443 222332 2 44555789999999999984
|
| >2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-08 Score=94.30 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=100.2
Q ss_pred eeEEEEEEEecCHHHHHHHHh-Cccc-cccccccceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 94 RRIKAEMLVNADVDSVWNALT-DYER-LADFVPNLACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLT-DYEr-lpeFiP~v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
..++.++.|+||+++||+++. |+++ +|+|+|.++++++++..+ .|.+|.+..+....+.+ +...+.... .
T Consensus 4 ~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~-----~kErl~~~D--~ 76 (158)
T 2qim_A 4 FTFQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGGPGTIKKLTFIEGGESKY-----VLHKIEAID--E 76 (158)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEE-----EEEEEEEEE--G
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCCCCeEEEEEEcCCCccee-----EEEEEEEEe--c
Confidence 468899999999999999999 9996 599999999999987532 23455443332211111 111222222 4
Q ss_pred CCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 171 SDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 171 ~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
..+.++|++++|| ++.|.+.|+|.|.+ ++||.++|.++.++... .++.-+. ..+..+..++++|.+.+.++
T Consensus 77 ~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~-~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~~ 154 (158)
T 2qim_A 77 ANLGYNYSIVGGVGLPDTIEKISFETKLVEGA-NGGSIGKVTIKIETKGDAQPNEEEGK-AAKARGDAFFKAIESYLSAH 154 (158)
T ss_dssp GGTEEEEEEEEESSCCCSEEEEEEEEEEEECS-TTCEEEEEEEEEEESTTCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEEeccCCccceEEEEEEEEEEecC-CCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 6899999999997 67999999999964 45799999999988654 3343333 45667788888888876553
|
| >3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-08 Score=100.03 Aligned_cols=159 Identities=12% Similarity=0.087 Sum_probs=111.9
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHH-hCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNAL-TDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VL-TDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
.+.++.|+.+.+++..+.+++...|++|++.|+++| .|.+..++|.+++.++++|+.-+++...++++-.... .+...
T Consensus 39 ~~~gv~vy~~~~~~~g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~y~~~~~~~-~~~v~ 117 (221)
T 3p0l_A 39 QDNGDKVMSKVVPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAA-GNLVG 117 (221)
T ss_dssp CTTSCEEEEEECSSSCEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSEEEEEEEECC----CCSC
T ss_pred cCCCcEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEecCCCeEEEEEeecccc-CCccC
Confidence 467899999999776677899999999999999998 6999999999999999999986666543343311100 00000
Q ss_pred EE-EE-EEEEEeecCCCCceEEE-EEEcc-------cc---ceeeEEEEEEecCCCC--eeEEEEEEEEecCCCccHHHH
Q 004764 157 AR-VV-LDLQELIHSASDRELYF-SMVDG-------DF---KKFEGKWSIKSGTRSS--TTTLSYEVNVIPRLNFPAIFL 221 (732)
Q Consensus 157 ar-vv-Ldv~E~~~~~~~rrI~F-~~veG-------Df---k~f~GsW~Lepl~~g~--gT~LtY~l~V~P~~piP~~Lv 221 (732)
.| .+ +...... ++.-+.. +-++. .| ..+.|.|.++|.+ ++ +|.|+|-+.++|++++|.+++
T Consensus 118 ~RDfv~~r~~~~~---~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-~~~~~t~vt~~~~~Dp~G~iP~~lv 193 (221)
T 3p0l_A 118 PRDFVSVRCAKRR---GSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLA-GSPSKTKLTWLLSIDLKGWLPKSII 193 (221)
T ss_dssp CEEEEEEEEEEEC---SSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEET-TEEEEEEEEEEECEECCSSCCHHHH
T ss_pred CceEEEEEEEEEc---CCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECC-CCCCcEEEEEEEEecCCCCCCHHHH
Confidence 00 00 0000000 1111111 11211 11 3456899999986 34 799999999999999999999
Q ss_pred HHHHHhCHHHHHHHHHHHHH
Q 004764 222 ERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 222 ~~~ir~~L~~~L~ALk~raE 241 (732)
++++.+.+...+.+||++++
T Consensus 194 n~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 194 NQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999887
|
| >1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-08 Score=94.52 Aligned_cols=141 Identities=10% Similarity=0.126 Sum_probs=100.2
Q ss_pred eeEEEEEEEecCHHHHHHHHh-Cccc-cccccc-cceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALT-DYER-LADFVP-NLACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLT-DYEr-lpeFiP-~v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..++.++.|+||+++||+++. |+.+ +|+|+| .++++++++..+ .|.+|.+.......+.+. ...+....
T Consensus 3 ~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~-----kErl~~~D-- 75 (159)
T 1e09_A 3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYV-----KHKIDSID-- 75 (159)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEE-----EEEEEEEE--
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEE-----EEEEEEEc--
Confidence 468899999999999999999 9985 699999 578888887532 234555544322111111 11222222
Q ss_pred CCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCc--cHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 170 ASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF--PAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 170 ~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi--P~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
...+.++|++++|| ++.|.+.|+|.|.+ +++|.++|.++.++.... |+.-++ ..+..+..++++|.+...+
T Consensus 76 ~~~~~~~y~iieG~~~~~~~~~~~~~~~v~~~~-~~gs~v~wt~~y~~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yll~ 153 (159)
T 1e09_A 76 KENYSYSYTLIEGDALGDTLEKISYETKLVASP-SGGSIIKSTSHYHTKGNVEIKEEHVK-AGKEKASNLFKLIETYLKG 153 (159)
T ss_dssp TTTTEEEEEECCCTTTGGGEEEEEEEEEECCCT-TSSEEEEEEEEEEECSSCCCCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEecccCcccceEEEEEEEEEecC-CCCEEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 47899999999997 58999999999964 457999999999886543 444343 5577788888888887765
Q ss_pred h
Q 004764 243 S 243 (732)
Q Consensus 243 ~ 243 (732)
+
T Consensus 154 ~ 154 (159)
T 1e09_A 154 H 154 (159)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.5e-08 Score=95.96 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=104.1
Q ss_pred EEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCC-CeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceEE
Q 004764 98 AEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYP-GRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRELY 176 (732)
Q Consensus 98 asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g-grirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI~ 176 (732)
....|+||++.||+++.|+.+...|.|.++++++++..++ |.+|.+..+......+ +...+.+.. ...+.++
T Consensus 39 ~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGsVR~~t~~~G~p~~~-----vkErL~~iD--~~~~~~s 111 (190)
T 3kl1_A 39 ITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVISGLPAST-----STERLEFVD--DDHRVLS 111 (190)
T ss_dssp EEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEEEEECSSSSCEE-----EEEEEEEEE--TTTTEEE
T ss_pred EEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCeEEEEEecCCCccce-----EEEEEEEEe--ccCCEEE
Confidence 3348999999999999999998889999999998764322 4566654443211111 111222222 4679999
Q ss_pred EEEEccc--cceeeEEEEEEec----CCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 177 FSMVDGD--FKKFEGKWSIKSG----TRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 177 F~~veGD--fk~f~GsW~Lepl----~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
|++++|+ ++.|.+.-.+.+. ..+++|.|+|...++|.-..-..-...++..-....|++|++.+|+.+
T Consensus 112 Y~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g~~~e~~~~~~~~~~~~gL~~L~~~~e~~~ 185 (190)
T 3kl1_A 112 FRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAP 185 (190)
T ss_dssp EEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999997 5889999998885 235689999999999755555556678888889999999999999863
|
| >3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-08 Score=101.25 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=97.2
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecC--CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCP--YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~--~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
......|+||+++||+++.|+.+++.|.|.+++|++++.. +.|.+|.+......... .+...+.+.. +..+
T Consensus 56 ~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~-----~vkErL~~lD--de~~ 128 (208)
T 3jrs_A 56 SLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPAN-----TSRERLDLLD--DDRR 128 (208)
T ss_dssp EEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEECTTSSCC-----EEEEEEEEEE--TTTT
T ss_pred EEEEEEEeCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeEEEEEecCCCccc-----eEEEEEEEEe--ccCC
Confidence 3444589999999999999999999999999998776431 11345544432221000 1112223333 4678
Q ss_pred eEEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEe-----cCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 174 ELYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVI-----PRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 174 rI~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~-----P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
.++|++++|+ ++.|.+..+|.|.+.+++|.++|.+.++ |.-.....-...++..-....|++|++.+|+++
T Consensus 129 ~~sYsIieG~lpv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~g~~~e~a~~~~~~vy~~gL~~L~~~~e~~~ 206 (208)
T 3jrs_A 129 VTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 206 (208)
T ss_dssp EEEEEEEESSSSCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeeCCcceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999997 6999999999996545689999988876 223333334477788888999999999999874
|
| >2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=96.85 Aligned_cols=137 Identities=10% Similarity=0.257 Sum_probs=94.0
Q ss_pred EEEEEEEEEcCCHHHHHHH-HhccCcc-cccCcCC-cEEEEEEeeCC--EEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNV-MTAYETL-PEIVPNL-AISKILSRENN--KVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~v-LtDyE~y-Pef~P~V-~ssrVLer~~g--~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.|+||+++||++ +.|+.++ |.|+|.+ +++++++.+++ .++.+... .|...-....+ ++...+..+
T Consensus 3 ~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~-~g~~~~~~kEr--l~~iD~~~~ 79 (155)
T 2flh_A 3 KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFL-PEVSPSYQREE--ITEFDESSH 79 (155)
T ss_dssp EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEEC-TTSSSCEEEEE--EEEEETTTT
T ss_pred cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcCCCCCCeEEEEEee-CCCCCcEEEEE--EEEEeCCCC
Confidence 4588999999999999999 7999999 9999965 67798877643 35544333 23010112233 233335668
Q ss_pred eEEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHH--hhHHHHHHHHHHHHH
Q 004764 419 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIY--EDLPSNLCAIRDYVE 487 (732)
Q Consensus 419 rIsf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr--~~l~~~L~ALK~rAE 487 (732)
.++|+.++|+ ++.+.+.++|.|.++|+|.++|...|++.++. .+. + ..+. ..+..++++|.++.-
T Consensus 80 ~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~-~~~--~-~~~~~~~~~~~~~k~ie~yll 151 (155)
T 2flh_A 80 EIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDI-EEK--V-TPTKTSQSTLMYLRRLERYLS 151 (155)
T ss_dssp EEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC----------C-CHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCC-ccC--h-hHhhhHHHHHHHHHHHHHHHh
Confidence 9999999986 56889999999988888999999999986432 221 1 2223 456677777777653
|
| >3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.2e-08 Score=95.67 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=103.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
-.-.....|+||++.||+++.|+.+.+.|.|.++++++++.++ |.+|.+... .|...-....+ ++...+..+.++
T Consensus 35 ~~~~~~~~I~Apa~~vW~lv~df~~~~~w~p~I~s~e~~eGdg~vGsVR~~t~~-~G~p~~~vkEr--L~~iD~~~~~~s 111 (190)
T 3kl1_A 35 CTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGSVREVTVI-SGLPASTSTER--LEFVDDDHRVLS 111 (190)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCTTCGGGTCSSEEEEEEEESSSSTTCEEEEEEC-SSSSCEEEEEE--EEEEETTTTEEE
T ss_pred eeEEEEEEecCCHHHHHHHHhCCCChhHcccccCEEEEEcCCCCCCeEEEEEec-CCCccceEEEE--EEEEeccCCEEE
Confidence 3444445899999999999999999878999999999987654 345554433 33221122333 333345568999
Q ss_pred EEEEecC--CcceeEEEEEEEc-----CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 422 FEQVEGD--FDSFQGKWLFEQL-----GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 422 f~~veGd--fk~f~G~W~Lep~-----gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
|+.++|+ ++.+.+.-.+.+. ++++|.|+|...|+|..+ ..+.-+..++..-+...|++|++.+|+...
T Consensus 112 Y~iieG~~~~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~p~g--~~~e~~~~~~~~~~~~gL~~L~~~~e~~~~ 186 (190)
T 3kl1_A 112 FRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIPEG--NTEEDTKMFVDTVVKLNLQKLGVAATSAPM 186 (190)
T ss_dssp EEEEEESSSCCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEECCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCccccEEEEEEEEecccccCCCCcEEEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999986 4578888888873 566899999999995322 334456777777889999999999998743
|
| >1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.7e-08 Score=95.34 Aligned_cols=143 Identities=5% Similarity=-0.102 Sum_probs=101.6
Q ss_pred eEEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEecc--ceeEEEEEEEEEEEEEeeCCCe
Q 004764 343 HRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCK--GLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 343 ~~~V~asI~I~-APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~--gll~~~~~~rvvLdv~e~~~rr 419 (732)
...+.+...|+ +|+++|+++|.|.+.+++|.+.+.++++++..+ ...+++.... .+...-+...............
T Consensus 51 ~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~~~-~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~ 129 (214)
T 1ln1_A 51 LYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNG-ETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRK 129 (214)
T ss_dssp EEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEETT-EEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCC
T ss_pred cEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEeccCC-CEEEEEEEEcCCCCCCceEEEEEEEEecccCCCe
Confidence 46789999995 999999999999999999999999999998854 3323332111 1111112111111111112222
Q ss_pred ---EEEEEEe--------cC--CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 420 ---ISFEQVE--------GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 420 ---Isf~~ve--------Gd--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
+..+.++ |- ...+.|.|.|+|.++++|+++|...++|. +++|.++++.++...+...|+.|++++
T Consensus 130 ~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~--G~iP~~l~n~~~~~~~~~~l~~l~k~~ 207 (214)
T 1ln1_A 130 IHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG--GQIPSWLINWAAKNGVPNFLKDMARAC 207 (214)
T ss_dssp EEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS--SCCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC--CcccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334443 22 22578999999998888999999999985 679999999999999999999999999
Q ss_pred Hh
Q 004764 487 EK 488 (732)
Q Consensus 487 E~ 488 (732)
++
T Consensus 208 ~~ 209 (214)
T 1ln1_A 208 QN 209 (214)
T ss_dssp HT
T ss_pred Hh
Confidence 74
|
| >3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.2e-08 Score=97.35 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=98.3
Q ss_pred ceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC---CEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 341 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 341 g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~---g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
..+-.-.....|+||+++||+++.||.+++.|.|.++++++++.++ |.+|.+... .|...-....+ |+...+..
T Consensus 51 ~~~c~~~v~~~I~ApadkVW~lv~Df~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~-~G~p~~~vkEr--L~~lDde~ 127 (208)
T 3jrs_A 51 NGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVI-SGLPANTSRER--LDLLDDDR 127 (208)
T ss_dssp TTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEECCTTCCCSTTCEEEEEEC-TTSSCCEEEEE--EEEEETTT
T ss_pred CCeEeEEEEEEEeCCHHHHHHHHhCcCChhHccccceEEEEecCCCCCCCeEEEEEec-CCCccceEEEE--EEEEeccC
Confidence 3334445556899999999999999999999999999999886542 335544332 33211122333 33333456
Q ss_pred CeEEEEEEecC--CcceeEEEEEEEcC-CCeEEEEEEEEEEec-cC--ccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 418 QEISFEQVEGD--FDSFQGKWLFEQLG-SHHTLLKYSVESKMQ-KN--SLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 418 rrIsf~~veGd--fk~f~G~W~Lep~g-dG~TrVty~v~~ep~-~d--~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
+.++|+.++|+ ++.+.+..+|.|.+ +++|.+.|...|+.- .| ......-+..++...+...|++|++.+|+..
T Consensus 128 ~~~sYsIieG~lpv~~Y~sti~V~p~~~g~~t~V~Wt~~fes~~~D~p~g~~~e~a~~~~~~vy~~gL~~L~~~~e~~~ 206 (208)
T 3jrs_A 128 RVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 206 (208)
T ss_dssp TEEEEEEEESSSSCTTCEEEEEEEEEEC-----CEEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeeCCcceeeEEEEEEEEEccCCCccEEEEEEEEEEccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88999999986 66899999999964 457999999888720 00 1122334466667777899999999999863
|
| >2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=97.67 Aligned_cols=128 Identities=12% Similarity=0.125 Sum_probs=86.0
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
.++.+|+|+||++.||++++|+++||+|+|.++++ +.. ++++ |+...+-.+.. .++. .++....-.
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~--~~~-~~~~-w~a~~~p~G~v----~v~~------~~~~~~gv~ 93 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGG--LEA-DGED-WIAKGGPLGEV----RVNF------APHNEFGVI 93 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTC--CEE-ETTE-EEEECSSSCEE----EEEE------CCCCSSCBC
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhh--ccc-CCCc-EEEeccCCCcE----EEEE------ecCCCceEE
Confidence 46999999999999999999999999999999875 333 2333 22221111111 1111 111011222
Q ss_pred EEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 175 LYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 175 I~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
..+....+.. ...+.|++.|. +.||+|+|++.+.|+++.+.+ +..+..+...|+.||+.+|.
T Consensus 94 d~~~~l~~g~-~~~~~~rv~p~--g~GTeV~~tl~~~pg~~~~~~---~~~~~~v~~dL~~LK~l~E~ 155 (156)
T 2qpv_A 94 DHVVTLPDGL-KVYNALRVTPN--GSGTEVSFTLLRLEGMTDEDF---EQDASAITADLEMLKSLLEA 155 (156)
T ss_dssp CEEEECTTSC-EEEEEEEEEEE--TTEEEEEEEEECCTTCCHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCc-EEEEEEEEEeC--CCCEEEEEEEecCCCCChhhh---hhhHHHHHHHHHHHHHHHhC
Confidence 3444333222 35678999985 468999999999998887776 55666799999999999984
|
| >2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.1e-08 Score=99.95 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=110.5
Q ss_pred cCCceEEEEEEecCcc---eeEEEEEEEe-cCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee-----
Q 004764 78 EQRKVHCEVEVVSWRE---RRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ----- 148 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~---rrV~asi~V~-AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~----- 148 (732)
...+++|+.+.+.+.. +.+++...+. ++++.|+++|.|.+.+++|.+.+.++++|+.-+++...++.+-..
T Consensus 54 ~~~gv~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~i~~~~~i~y~~~~~p~p~s 133 (255)
T 2e3n_A 54 EEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPAS 133 (255)
T ss_dssp EETTEEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEEETTEEEEEEEECCCTTSC
T ss_pred eCCCEEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhhcceeEEEEEcCCCCEEEEEEeecCCCcC
Confidence 4578999999755432 2577777776 999999999999999999999999999998744444333332211
Q ss_pred -e-eEEEEEE------------EEEEEEEEEeec--CCCCceEEEEE----Ecccc-ceeeEEEEEEecCCCCeeEEEEE
Q 004764 149 -R-ALYWHIE------------ARVVLDLQELIH--SASDRELYFSM----VDGDF-KKFEGKWSIKSGTRSSTTTLSYE 207 (732)
Q Consensus 149 -~-il~~~~~------------arvvLdv~E~~~--~~~~rrI~F~~----veGDf-k~f~GsW~Lepl~~g~gT~LtY~ 207 (732)
| ++..... .-+++......+ ++..+.|+... ..|-+ +...|.|.|++ + +++|+|+|.
T Consensus 134 ~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~-~-~~~t~vt~~ 211 (255)
T 2e3n_A 134 QRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISR-D-NILCKITYV 211 (255)
T ss_dssp CEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCG-G-GEEEEEEEE
T ss_pred CceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCccccc-C-CCcEEEEEE
Confidence 1 1111100 001111111111 12223355442 23322 22237788887 2 478999999
Q ss_pred EEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcc
Q 004764 208 VNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 208 l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~ 245 (732)
+.++|++++|.++++++++..++..|..|++++++.+.
T Consensus 212 ~~~Dp~G~iP~~lvn~~~~~~~~~~l~~L~k~v~~~~~ 249 (255)
T 2e3n_A 212 ANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTA 249 (255)
T ss_dssp EEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCccCHHHHHHHHhccccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999997543
|
| >4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=91.54 Aligned_cols=141 Identities=11% Similarity=0.169 Sum_probs=98.6
Q ss_pred EEEEEEEEEcCCHHHHHHHH-hccCc-ccccCcC-CcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVM-TAYET-LPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vL-tDyE~-yPef~P~-V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.|+|||++||+++ .|+.+ .|.|+|. ++++++++.++ |.++.+.....+ .......+ ++...+..+
T Consensus 3 ~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~-~~~~~kEr--l~~iD~~~~ 79 (159)
T 4a8u_A 3 FNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGF-PFKYVKDR--VDEVDHTNF 79 (159)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTS-SCSEEEEE--EEEEETTTT
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCC-CccEEEEE--EEEEccccC
Confidence 45889999999999999999 99999 6999995 79999998764 345544433222 11122333 333335668
Q ss_pred eEEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 419 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 419 rIsf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.++|+.++|+ +..+...++|.|.++|+|.+++...|++.++..+++.-+ +...+.+..+++++.++.-+
T Consensus 80 ~~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~-k~~~~~~~~~~k~ie~yll~ 153 (159)
T 4a8u_A 80 KYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQI-KASKEMGETLLRAVESYLLA 153 (159)
T ss_dssp EEEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 9999999987 457899999999888889999999999875433332222 22333445667777776654
|
| >3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.9e-08 Score=98.16 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=98.9
Q ss_pred ceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC---CEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 341 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN---NKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 341 g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~---g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
..+-.-....+|+||+++||++|.||.+++.|.|.+++|++.+.++ |.+|.+.. ..|...-....+ |+...+..
T Consensus 47 ~~~c~~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eGd~g~vGsVR~lt~-~~G~p~~~vkEr--L~~lDd~~ 123 (211)
T 3k3k_A 47 PGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIV-ISGLPANTSTER--LDILDDER 123 (211)
T ss_dssp TTEEEEEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTTCCCCTTCEEEEEE-SSSSSCEEEEEE--EEEEETTT
T ss_pred CCeEeEEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecCCCCCCCcEEEEEe-cCCCccceEEEE--EEEEeccC
Confidence 3334445556899999999999999999999999999999886543 34554433 234221122333 33333455
Q ss_pred CeEEEEEEecC--CcceeEEEEEEEcCCCeEEEEEEEEEEe-----ccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 418 QEISFEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKM-----QKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 418 rrIsf~~veGd--fk~f~G~W~Lep~gdG~TrVty~v~~ep-----~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
..++|+.++|+ ++.+.+.++|.|.++|+ ++|...|+. ..+ ..+.-+..++..-+...|++|++.+|+..
T Consensus 124 ~~~sYsIieg~lpv~~Y~sti~V~p~~~gg--V~Wt~~fes~~~D~P~g--~~~e~a~~~v~~iy~~gL~~L~~~~e~~~ 199 (211)
T 3k3k_A 124 RVTGFSIIGGEHRLTNYKSVTTVHRFEKEN--RIWTVVLESYVVDMPEG--NSEDDTRMFADTVVKLNLQKLATVAEAMA 199 (211)
T ss_dssp TEEEEEEEEETTGGGTCEEEEEEEEEEETT--EEEEEEEEEEEEECCSS--SSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeecCcceeEEEEEEEEEECCCCC--EEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999985 66899999999987775 889888862 111 11111234444456788888999988876
Q ss_pred CC
Q 004764 491 GD 492 (732)
Q Consensus 491 ~~ 492 (732)
..
T Consensus 200 ~~ 201 (211)
T 3k3k_A 200 RN 201 (211)
T ss_dssp TT
T ss_pred hh
Confidence 54
|
| >2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=95.45 Aligned_cols=134 Identities=9% Similarity=0.104 Sum_probs=90.2
Q ss_pred eEEEEEEEecCHHHHHHHH-hCccccccccc-cceEEEEEecC--CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 95 RIKAEMLVNADVDSVWNAL-TDYERLADFVP-NLACSGRIPCP--YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VL-TDYErlpeFiP-~v~~SeVLe~~--~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
.++.++.|+||+++||+++ .|+..+|+|+| .++++++++.. +.|.+|.+..+......+ +.-.+.... .
T Consensus 18 k~~~ev~i~apa~kvw~~~~~d~~~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~-----~kErl~~iD--~ 90 (166)
T 2i9y_A 18 KLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKV-----AKERIEAVE--P 90 (166)
T ss_dssp EEEEEEEESSCHHHHHGGGSSCSSCCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEE-----EEEEEEEEE--T
T ss_pred EEEEEEEecCCHHHHHHHHhcccccccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceE-----EEEEEEEEe--c
Confidence 6999999999999999995 58899999999 88888887642 122344443322111101 111222222 5
Q ss_pred CCceEEEEEEccc----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC---ccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 171 SDRELYFSMVDGD----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN---FPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 171 ~~rrI~F~~veGD----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p---iP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
..+.++|++++|| ++.|.+.|+|.|.+.+++|.+.|.+.+++... -|..+ .+.+..++++|.+.+
T Consensus 91 ~~~~~~y~iieGd~~~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~~l 162 (166)
T 2i9y_A 91 DKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETL-----LQFCVEVSKEIDEHL 162 (166)
T ss_dssp TTTEEEEEECCTTGGGTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTHHH-----HHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEEeCCCCCCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHHHH-----HHHHHHHHHHHHHHH
Confidence 7899999999998 68999999999964346899999999976432 33222 234445555555544
|
| >1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-07 Score=92.74 Aligned_cols=161 Identities=12% Similarity=-0.010 Sum_probs=109.5
Q ss_pred cCCceEEEEEEecC-cceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSW-RERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~-~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
...+|+|+.+.... ..+-+++...|++|++.|+++|.|.+..++|.+++.++++|+.-+++...++++-......+ ..
T Consensus 50 ~~~gv~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~~I~y~~~~~~~~~~-v~ 128 (224)
T 1jss_A 50 KAKDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNI-IS 128 (224)
T ss_dssp EETTEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTT-BC
T ss_pred ECCCEEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcCCCeEEEEEEcccccCCC-CC
Confidence 34889999995444 44668999999999999999999998889999999999999876665433343322100000 00
Q ss_pred EE-E-EEEEEEeecCCCCceEE-EEEEc------ccc--ceeeEEEEEEecCCC-CeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 AR-V-VLDLQELIHSASDRELY-FSMVD------GDF--KKFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 ar-v-vLdv~E~~~~~~~rrI~-F~~ve------GDf--k~f~GsW~Lepl~~g-~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
-| . .+...... .+..+. ..-++ |-. ....|.|.++|.+.+ +.|.|+|-+.++|++++|.++++++
T Consensus 129 ~RDfv~~r~~~~~---~~~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~ 205 (224)
T 1jss_A 129 PREFVDFSYTVGY---EEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTA 205 (224)
T ss_dssp CEEEEEEEEEEEE---TTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCCCHHHHHHH
T ss_pred CCeEEEEEEEEEc---CCeEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCCccHHHHHHH
Confidence 00 0 00000011 111111 11111 111 345588999998532 4799999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHh
Q 004764 225 IRSDLPVNLQALACRAER 242 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr 242 (732)
+...+...+.+||+++++
T Consensus 206 ~~~~~~~~~~~Lr~~~~~ 223 (224)
T 1jss_A 206 MASTLANFYSDLRKGLRK 223 (224)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHhHHHHHHHHHHHHhh
Confidence 999999999999997653
|
| >3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=96.16 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=95.4
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCC---CeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYP---GRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~g---grirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
......|+||+++||++|.||.+++.|.|.+++|++++. ++ |.+|.+..+......+ +...+.+.. +..
T Consensus 52 ~~v~~~I~ApadkVW~lv~dF~~l~~w~p~V~s~e~~eG-d~g~vGsVR~lt~~~G~p~~~-----vkErL~~lD--d~~ 123 (211)
T 3k3k_A 52 SLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQN-FEMRVGCTRDVIVISGLPANT-----STERLDILD--DER 123 (211)
T ss_dssp EEEEEEESSCHHHHHHHHTCTTCGGGTCSSEEEEECCTT-CCCCTTCEEEEEESSSSSCEE-----EEEEEEEEE--TTT
T ss_pred EEEEEEEcCCHHHHHHHHhCcCChhHcCccceEEEEecC-CCCCCCcEEEEEecCCCccce-----EEEEEEEEe--ccC
Confidence 344568999999999999999999999999998877643 22 4555554433211111 112222332 467
Q ss_pred ceEEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEe------cCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 173 RELYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVI------PRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 173 rrI~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~------P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
+.++|++++|+ ++.|.+.++|.|.+. + . ++|.+.++ |...-... ...++..-....|++|++.+|+++
T Consensus 124 ~~~sYsIieg~lpv~~Y~sti~V~p~~~-g-g-V~Wt~~fes~~~D~P~g~~~e~-a~~~v~~iy~~gL~~L~~~~e~~~ 199 (211)
T 3k3k_A 124 RVTGFSIIGGEHRLTNYKSVTTVHRFEK-E-N-RIWTVVLESYVVDMPEGNSEDD-TRMFADTVVKLNLQKLATVAEAMA 199 (211)
T ss_dssp TEEEEEEEEETTGGGTCEEEEEEEEEEE-T-T-EEEEEEEEEEEEECCSSSSSSC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeecCcceeEEEEEEEEEECCC-C-C-EEEEEEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999997 699999999999752 2 3 88888876 32222222 255666677889999999999874
Q ss_pred c
Q 004764 245 G 245 (732)
Q Consensus 245 ~ 245 (732)
.
T Consensus 200 ~ 200 (211)
T 3k3k_A 200 R 200 (211)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.7e-07 Score=90.62 Aligned_cols=164 Identities=7% Similarity=0.024 Sum_probs=111.5
Q ss_pred CCceEEEEEEecCcceeEEEEEEEecCHHHHH-HHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEE
Q 004764 79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEA 157 (732)
Q Consensus 79 e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw-~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~a 157 (732)
+.++.|+.........-+++...|++|++.|+ .++.|.+..++|.+++.++++|+.-+++...++++..... .|-...
T Consensus 51 ~~g~~vy~~~~~~~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~~~~~~p~~-~~~~~~ 129 (229)
T 1em2_A 51 EYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAA-GGVVSP 129 (229)
T ss_dssp TTCCEEEEEEETTTEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBT-TTTBCC
T ss_pred CCCCEEEEEecCCCCceEEEEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEecCCCeEEEEEEecCcC-CCCcCC
Confidence 36899999998844345778888899999999 9999999999999999999999976655433444322100 000000
Q ss_pred EEEEEEEEeecCCCCceEEEEEEcc-------cc---ceeeEEEEEEecCC-CCeeEEEEEEEEecCCCccHHHHHHHHH
Q 004764 158 RVVLDLQELIHSASDRELYFSMVDG-------DF---KKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAIFLERIIR 226 (732)
Q Consensus 158 rvvLdv~E~~~~~~~rrI~F~~veG-------Df---k~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~piP~~Lv~~~ir 226 (732)
|=.+.++........--|..+-++. .+ ..+.|.|.++|.+. ++.|.|+|-+.++|++++|.++++.++.
T Consensus 130 RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~l~n~~~~ 209 (229)
T 1em2_A 130 RDFVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLA 209 (229)
T ss_dssp EEEEEEEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHH
T ss_pred CeeEEEEEEEEcCCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCCCCHHHHHHHHH
Confidence 0000000000000111111122211 11 33457899999752 3679999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHhh
Q 004764 227 SDLPVNLQALACRAERS 243 (732)
Q Consensus 227 ~~L~~~L~ALk~raEr~ 243 (732)
+.+...|.+||+.+++.
T Consensus 210 ~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 210 ATMFEFAFHLRQRISEL 226 (229)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999875
|
| >2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-06 Score=86.66 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=110.6
Q ss_pred cCCceEEEEEEecC-cceeEEEEEEEecCHHHHHHHH--hCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEE
Q 004764 78 EQRKVHCEVEVVSW-RERRIKAEMLVNADVDSVWNAL--TDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154 (732)
Q Consensus 78 ~e~~v~v~v~~v~~-~~rrV~asi~V~AP~e~Vw~VL--TDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~ 154 (732)
...++.|+.+...+ ....++++..|+++++.|+++| .|.+..++|.+.+.++++|+.-+++....++.... .+.+-
T Consensus 50 ~~~gv~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~~~i~~~~~~~-~~~~~ 128 (231)
T 2r55_A 50 EGNGVSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPS-AAMKL 128 (231)
T ss_dssp CCSSEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSSEEEEEEECCC-BTTTT
T ss_pred eCCCEEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCCCEEEEEEEecc-ccCCc
Confidence 35789999988743 3556899999999999999999 89999999999999999999865554333333211 00000
Q ss_pred EEEE--EEEEEEEeecCCCCce--EEEEEEcc-------c-c--ceeeEEEEEEecCC-CCeeEEEEEEEEecCCCccHH
Q 004764 155 IEAR--VVLDLQELIHSASDRE--LYFSMVDG-------D-F--KKFEGKWSIKSGTR-SSTTTLSYEVNVIPRLNFPAI 219 (732)
Q Consensus 155 ~~ar--vvLdv~E~~~~~~~rr--I~F~~veG-------D-f--k~f~GsW~Lepl~~-g~gT~LtY~l~V~P~~piP~~ 219 (732)
...| +.+...... .++. |..+-++- . . ..+.+.|.++|.+. +++|.|+|-+.++|++++|.+
T Consensus 129 v~~RDfv~~r~~~~~---~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~ 205 (231)
T 2r55_A 129 ISPRDFVDLVLVKRY---EDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQN 205 (231)
T ss_dssp BCCEEEEEEEEEEEC---TTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSCCHH
T ss_pred cCCCeEEEEEEEEEc---CCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCccHH
Confidence 0001 011111111 1121 22232321 1 1 33457899999752 468999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 220 FLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 220 Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
+++.++...+...+.+|++.++++
T Consensus 206 lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 206 VVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
|
| >1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-07 Score=87.33 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=90.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..+..++.|+||+++||++|+|.+.+++|++.- ..+.+--+.|+..++......|.. ..+..++ +++ .++++
T Consensus 22 ~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v-~e~--~p~~r 97 (178)
T 1xuv_A 22 QEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFHGVN-HDV--TEPER 97 (178)
T ss_dssp SEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--ETTTE
T ss_pred cEEEEEEEECCCHHHHHHHhCCHHHHHhCCCCCCccceEEEEecccCCEEEEEEECCCCCE-EEEEEEE-EEE--eCCCE
Confidence 458888899999999999999999999998641 122222234555555444434432 2233332 122 47799
Q ss_pred EEEEEEec--C--CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 420 ISFEQVEG--D--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 420 Isf~~veG--d--fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
|.|...-+ + .......|+|++.++++|+|++...+.+. ...+.++...+.......|..|++++|...
T Consensus 98 l~~~~~~~~~~~~~~~~~v~~~l~~~~~ggT~lt~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~Lk~~le~~~ 169 (178)
T 1xuv_A 98 IISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTI---EDRDGMLQSGMEEGINDSYERLDELLEKMK 169 (178)
T ss_dssp EEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCcEEEEEEEEEcCCCCEEEEEEEEeCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 99987542 2 12467888999987667999998775321 011122222346788899999999998754
|
| >2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-07 Score=87.23 Aligned_cols=135 Identities=10% Similarity=0.184 Sum_probs=87.9
Q ss_pred eeEEEEEEEecCHHHHHHH-HhCcccc-ccccccce-EEEEEecCCC--CeeEEEEEeee-eeEEEEEEEEEEEEEEEee
Q 004764 94 RRIKAEMLVNADVDSVWNA-LTDYERL-ADFVPNLA-CSGRIPCPYP--GRIWLEQRGLQ-RALYWHIEARVVLDLQELI 167 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~V-LTDYErl-peFiP~v~-~SeVLe~~~g--grirv~Qvg~~-~il~~~~~arvvLdv~E~~ 167 (732)
..++.++.|+||+++||++ +.|+.++ |.|+|.+. ++++++. ++ |.+|.+..+.. .. .+ +.-.+....
T Consensus 3 ~~~~~e~~i~a~a~kvw~~~v~d~~~l~pk~~P~~i~s~~~~eG-dgg~Gsvr~~~~~~g~~~-~~-----~kErl~~iD 75 (155)
T 2flh_A 3 KEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEG-DGGVGTILIFNFLPEVSP-SY-----QREEITEFD 75 (155)
T ss_dssp EEEEEEEEESSCHHHHHHHHHTSCTTHHHHHCTTTEEEEEEEEC-SSSTTCEEEEEECTTSSS-CE-----EEEEEEEEE
T ss_pred cEEEEEEEecCCHHHHHHHHhcccccccchhccccceEEEEEcC-CCCCCeEEEEEeeCCCCC-cE-----EEEEEEEEe
Confidence 3588999999999999999 7999999 99999774 4577664 32 23444433221 00 01 111222222
Q ss_pred cCCCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHH--hCHHHHHHHHHHHH
Q 004764 168 HSASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIR--SDLPVNLQALACRA 240 (732)
Q Consensus 168 ~~~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir--~~L~~~L~ALk~ra 240 (732)
...+.++|++++|| ++.|.+.++|.|.+ +++|.++|....++....+..+ ...+ .-+..++++|.+..
T Consensus 76 --~~~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~-~ggs~v~wt~~y~~~~~~~~~~--~~~~~~~~~~~~~k~ie~yl 150 (155)
T 2flh_A 76 --ESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIE-EDKTLVNVKISYDHDSDIEEKV--TPTKTSQSTLMYLRRLERYL 150 (155)
T ss_dssp --TTTTEEEEEEEEEGGGGTTCSEEEEEEEEEEEE-TTEEEEEEEEEEEC-------C--CHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEEEeccccccCceEEEEEEEEEECC-CCCEEEEEEEEEEECCCCccCh--hHhhhHHHHHHHHHHHHHHH
Confidence 47899999999997 68999999999975 4689999999999876554411 2222 34455555555543
|
| >2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=95.04 Aligned_cols=151 Identities=14% Similarity=0.254 Sum_probs=103.3
Q ss_pred ccCcccc-CceeEEEEEEEEEcCCHHHHHHHH-h-ccCcc-cccCcCC-cEEEEEEeeC--CEEEEEEEeccceeEEEEE
Q 004764 333 FDGLLEN-GGVHRCVVASITVKAPVSEVWNVM-T-AYETL-PEIVPNL-AISKILSREN--NKVRILQEGCKGLLYMVLH 405 (732)
Q Consensus 333 ~D~l~e~-~g~~~~V~asI~I~APpE~VW~vL-t-DyE~y-Pef~P~V-~ssrVLer~~--g~~rv~q~g~~gll~~~~~ 405 (732)
.|+++.| ......+..++.|+||+++||+++ . |+.++ |.|+|.+ ++++++ .++ |.++.+... .|...-...
T Consensus 17 ~~~~~~~~~~~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~-~G~~~~~vk 94 (201)
T 2vq5_A 17 HQGIINQVSTVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFV-PGEFPHEYK 94 (201)
T ss_dssp --CTTGGGCCEEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECC-TTCSSCEEE
T ss_pred hhhhhhCccccceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEec-CCCcccEEE
Confidence 4455544 333467899999999999999995 6 99998 9999975 788988 553 234543332 232111223
Q ss_pred EEEEEEEEeeCCCeEEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCc-cchHHHHHHHHHhhHHHHH
Q 004764 406 ARVVMDICEQHEQEISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-LLSEAIMEEVIYEDLPSNL 479 (732)
Q Consensus 406 ~rvvLdv~e~~~rrIsf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~-~Lp~~lv~r~lr~~l~~~L 479 (732)
.+ ++...+....++|+.++|+ ++.+.....|.+.++|+|.++|...|++.++. ..|+.. .....+..++
T Consensus 95 Er--le~iDde~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~---~~~~~~~~~~ 169 (201)
T 2vq5_A 95 EK--FILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPL---ITTGPLAAMA 169 (201)
T ss_dssp EE--EEEEETTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTT---CCSHHHHHHH
T ss_pred EE--EEEEchhhCEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhH---HHHHHHHHHH
Confidence 33 3333356689999999986 44778888999988888999999999986432 222222 3455678888
Q ss_pred HHHHHHHHhhh
Q 004764 480 CAIRDYVEKRE 490 (732)
Q Consensus 480 ~ALK~rAE~~~ 490 (732)
+++.+++-+..
T Consensus 170 KaiE~yLlanp 180 (201)
T 2vq5_A 170 DAISKLVLEHK 180 (201)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHhCc
Confidence 88888886654
|
| >2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-06 Score=81.58 Aligned_cols=143 Identities=13% Similarity=0.035 Sum_probs=91.5
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
...+..++.|+||++.||++|+|.+.+++|++. +..+++--+.|+..++......|.. ..+..++ +++ .+++
T Consensus 13 ~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v-~e~--~p~~ 88 (171)
T 2il5_A 13 HVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGIY-ESL--VMDE 88 (171)
T ss_dssp EEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEE-EEE--ETTT
T ss_pred CceEEEEEEeCCCHHHHHHHHCCHHHHHhccCCCCccceEEEecccCCCEEEEEEECCCCCE-EEEEEEE-EEE--cCCC
Confidence 367999999999999999999999999999853 1222332334565555544434432 2223332 122 4789
Q ss_pred eEEEEEEecCC--cceeEEEEEEEcCCCeEEEEEEEEEEeccC--ccchH-----HHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 419 EISFEQVEGDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSE-----AIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 419 rIsf~~veGdf--k~f~G~W~Lep~gdG~TrVty~v~~ep~~d--~~Lp~-----~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
+|.|+...++. ......|+|++.++|+|+|++....-+..+ ..... ......+.......|..|++++|..
T Consensus 89 rl~~~~~~~~~~~~~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~ 168 (171)
T 2il5_A 89 YVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETS 168 (171)
T ss_dssp EEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEecCCCCCcEEEEEEEEECCCCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998754322 246788999998875799999875323100 00111 2233456778889999999999864
|
| >4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=84.40 Aligned_cols=141 Identities=12% Similarity=0.092 Sum_probs=93.5
Q ss_pred eeEEEEEEEecCHHHHHHHH-hCccc-ccccccc-ceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNAL-TDYER-LADFVPN-LACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VL-TDYEr-lpeFiP~-v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..++.++.|+|||++||+++ .|+.+ +|+|+|. ++++++++-.+ .|.+|.+......-..+ +...+....
T Consensus 3 ~~~~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~-----~kErl~~iD-- 75 (159)
T 4a8u_A 3 FNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKY-----VKDRVDEVD-- 75 (159)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSE-----EEEEEEEEE--
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccE-----EEEEEEEEc--
Confidence 35788999999999999999 99999 5999996 68888876421 13555554332211111 111222222
Q ss_pred CCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCc-cHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 170 ASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF-PAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 170 ~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi-P~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
...+.++|++++|| ++.|...++|.|.+ +++|.+++..+..+.... |..=--+..++....+++++-+.+.+
T Consensus 76 ~~~~~~~y~iiegd~l~~~~~~y~~ti~v~p~~-~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~ 153 (159)
T 4a8u_A 76 HTNFKYSYSVIEGGPVGDTLEKISNEIKIVATP-NGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLA 153 (159)
T ss_dssp TTTTEEEEEEEEETTCBTTEEEEEEEEEEEECT-TSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCEEEEEEeeCCCCccceEEEEEEEEEEECC-CCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999997 58999999999965 468999999999986432 22211122233334566666665544
|
| >3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-06 Score=85.32 Aligned_cols=144 Identities=11% Similarity=0.146 Sum_probs=102.0
Q ss_pred CceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEE-eeC------CEEEEEEEeccceeEEEEEEEEEEEE
Q 004764 340 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-REN------NKVRILQEGCKGLLYMVLHARVVMDI 412 (732)
Q Consensus 340 ~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLe-r~~------g~~rv~q~g~~gll~~~~~~rvvLdv 412 (732)
+..+=.-.....|+||++.||+++.||.+.+.|.|.|+++++.+ .++ |.+|.+.. ..|+..-....+ |+.
T Consensus 26 ~~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl-~~G~P~~~i~Er--L~~ 102 (189)
T 3oji_A 26 SPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSV-VSGLPASTSVEI--LEV 102 (189)
T ss_dssp C-CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTCEEEEEE-CSSSSBSEEEEE--EEE
T ss_pred CCCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCcEEEEEe-cCCCcCceEEEE--EEE
Confidence 44444555677899999999999999999999999999999986 432 34554333 234221122333 444
Q ss_pred EeeCCCeEEEEEEecC--CcceeEEEEEEEcC---CC-----eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 004764 413 CEQHEQEISFEQVEGD--FDSFQGKWLFEQLG---SH-----HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI 482 (732)
Q Consensus 413 ~e~~~rrIsf~~veGd--fk~f~G~W~Lep~g---dG-----~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~AL 482 (732)
..+..+.++|+.++|+ ++.+...-++.+.. +| .|.+.+...+++.. ..-+.-...++...+...|++|
T Consensus 103 lDde~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~--g~t~e~~~~~v~~v~~~gL~~L 180 (189)
T 3oji_A 103 LDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQ--GNTEEDTRMFVDTVVKSNLQNL 180 (189)
T ss_dssp EETTTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCT--TSCHHHHHHHHHHHHHHHHHHH
T ss_pred EeccCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 4456689999999986 56888888998853 33 68887778888632 2345567778888889999999
Q ss_pred HHHHHh
Q 004764 483 RDYVEK 488 (732)
Q Consensus 483 K~rAE~ 488 (732)
++.+|+
T Consensus 181 ~~~~e~ 186 (189)
T 3oji_A 181 AVISTA 186 (189)
T ss_dssp HHHHHC
T ss_pred HHHhhc
Confidence 999986
|
| >3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-06 Score=86.70 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=105.4
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEe-cCC-----CCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIP-CPY-----PGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe-~~~-----ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
-.....|+||+++||+++.||+.++.|.|.+++|++.+ ..+ -|.+|.+.........+ +...+....
T Consensus 32 s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P~~~-----i~ErL~~lD-- 104 (189)
T 3oji_A 32 SLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPAST-----SVEILEVLD-- 104 (189)
T ss_dssp EEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC----CCCSTTCEEEEEECSSSSBSE-----EEEEEEEEE--
T ss_pred eeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCCCccCCCCcEEEEEecCCCcCce-----EEEEEEEEe--
Confidence 34567899999999999999999999999999998864 322 24555554432211111 122222332
Q ss_pred CCCceEEEEEEccc--cceeeEEEEEEecCC---C----CeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 170 ASDRELYFSMVDGD--FKKFEGKWSIKSGTR---S----STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 170 ~~~rrI~F~~veGD--fk~f~GsW~Lepl~~---g----~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
+..+.++|++++|+ ++.|...-+|.+.+. | .+|.+.+.+.++|.-+.-.--...++......+|++|++.+
T Consensus 105 de~~~~sY~Iieg~~pv~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~P~g~t~e~~~~~v~~v~~~gL~~L~~~~ 184 (189)
T 3oji_A 105 EEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 184 (189)
T ss_dssp TTTTEEEEEEEECSBSSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEEecCCccccEEEEEEEEeccccCCCccccCcEEEEEeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999998 699999999998532 2 47999999999887777888888999999999999999999
Q ss_pred Hh
Q 004764 241 ER 242 (732)
Q Consensus 241 Er 242 (732)
|+
T Consensus 185 e~ 186 (189)
T 3oji_A 185 TA 186 (189)
T ss_dssp HC
T ss_pred hc
Confidence 86
|
| >1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=84.28 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=86.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCC--c--EEEEEEeeCCEEEEEEE-eccceeEEEEEEEEEEEEEeeCCCe
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNL--A--ISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V--~--ssrVLer~~g~~rv~q~-g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
.+..++.|+||+++||++|+|.+++++|++.- . .+.+-.+.|+..++... ...|.. ..+..++ +++ .++++
T Consensus 4 ~~~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~-~~~~~~v-~~~--~p~~~ 79 (147)
T 1z94_A 4 TIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQK-HAFGGRY-LEL--VPGER 79 (147)
T ss_dssp CEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCE-EEEEEEE-EEE--ETTTE
T ss_pred EEEEEEEeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCE-EEEEEEE-EEE--cCCCE
Confidence 47778899999999999999999999999752 1 11221234555554433 223322 2333332 122 47789
Q ss_pred EEEEEEec--CCc-ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 420 ISFEQVEG--DFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 420 Isf~~veG--dfk-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|.|+...+ ++. .....|+|++.++ +|+|++.....+. . .....+.......|..|++++|.
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~--~-----~~~~~~~~gw~~~L~~L~~~le~ 143 (147)
T 1z94_A 80 IRYTDRFDDAGLPGDMITTITLAPLSC-GADLSIVQEGIPD--A-----IPPENCYLGWQQSLKQLAALVEP 143 (147)
T ss_dssp EEEEEEESCCC---CEEEEEEEEEETT-EEEEEEEEECCCT--T-----SCHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEEEeCCCCCCcEEEEEEEEecCC-CEEEEEEEEcCCc--h-----hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99987653 232 4678899999865 6999998775431 1 12244567888999999999875
|
| >2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-06 Score=78.47 Aligned_cols=132 Identities=11% Similarity=0.152 Sum_probs=86.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.++.|+||+++||++|+|.++|++|++.. .+..--+.|+..++... ..+.. +.+..++ ++ ..++++|.|+
T Consensus 5 ~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~-~~~~~~~~G~~~~~~~~-~~g~~-~~~~~~v-~~--~~p~~~l~~~ 78 (146)
T 2leq_A 5 LIAQVKTVINAPIEKVWEALVNPEIIKEYMFGT-TVVSDWKEGSQIVWKGE-WKGKA-YEDKGTI-LQ--FNERSILQYS 78 (146)
T ss_dssp EEEEEEEEECSCHHHHHHHHSCTTHHHHHSSSC-EEECCCSTTCEEEEEEE-ETTEE-EEEEEEE-EE--EETTTEEEEE
T ss_pred ceEEEEEEECCCHHHHHHHHcCHHHhceeEcCC-cceeccCCCCEEEEEec-CCCce-ecccEEE-EE--EcCCCEEEEE
Confidence 578999999999999999999999999997422 12211134555444322 22311 2233332 11 2467899988
Q ss_pred EEec--C-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 424 QVEG--D-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 424 ~veG--d-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
...+ . -......|+|++.++ +|+|+++...-+ +. .....+.......|..|++++|..
T Consensus 79 ~~~~~~g~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~------~~-~~~~~~~~gw~~~l~~Lk~~le~~ 143 (146)
T 2leq_A 79 HFSPLTGKPDLPENYHVVTITLTALKK-GVEVELTQDNNE------TE-KEQKHSEDNWNTMLEGLKKFLENK 143 (146)
T ss_dssp CBCGGGCCCSCGGGSCEEEEEEEECSS-CEEEEEEEEEES------SH-HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EccCccCCCCCCCCceEEEEEEEEcCC-CeEEEEEEecCC------ch-hhHhhHHhhHHHHHHHHHHHHhcc
Confidence 6532 1 114678899999865 599998875332 11 345667788899999999999864
|
| >3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=84.74 Aligned_cols=140 Identities=9% Similarity=0.073 Sum_probs=97.3
Q ss_pred EEEEEEEEEcCCHHHHHHH-HhccCcc-cccCcC-CcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNV-MTAYETL-PEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~v-LtDyE~y-Pef~P~-V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.|+||+++||++ +.|+.++ |.|+|. ++++++++.++ |.++.+.....+ ..-....+ ++...+..+
T Consensus 10 ~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~-~~~~~kEr--l~~iD~~~~ 86 (165)
T 3ie5_A 10 YTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGH-PLTYMLHK--FDEIDAANF 86 (165)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTS-SCCEEEEE--EEEEEGGGT
T ss_pred EEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCC-CCceEEEE--EEEEchhcC
Confidence 6799999999999999999 5899998 999996 78888887764 345544433222 11122333 333335668
Q ss_pred eEEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 419 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 419 rIsf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.++|+.++|+ ++.+....+|. .++|+|.++|...|++.++..+++.-+ +...+....+++++.++.-+
T Consensus 87 ~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~~~~~~~~e~~-k~~~~~~~~~~K~ie~ylla 159 (165)
T 3ie5_A 87 YCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHPKPGCTVNEEEV-KIGEKKAYEFYKQVEEYLAA 159 (165)
T ss_dssp EEEEEEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEECTTCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9999999986 55777888888 567789999999999876443333222 22334455667777776654
|
| >2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-06 Score=82.06 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=90.3
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..+..++.|+||+++||++++|.+.+++|++.- ..+++--+.|+..++...+.+|..+ ....++ +++ .++++
T Consensus 12 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~-~~~~~v-~e~--~p~~r 87 (172)
T 2ldk_A 12 LSFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFETHEFTVGGKAAYYMTGPDGTKA-RGWWQF-TTI--EAPDH 87 (172)
T ss_dssp TEEEEEEEESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEEEECCSTTCEEEEEEECTTSCEE-EEEEEE-EEE--CSSSE
T ss_pred ceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCcccceEEEeecCCCEEEEEEECCCCCEE-eeEEEE-EEE--cCCCE
Confidence 458899999999999999999999999997631 2223323345655554444344321 223331 122 47789
Q ss_pred EEEEEEecC--------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 420 ISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 420 Isf~~veGd--------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
|.|....++ +......|+|++.+ ++|+|++...+.+. .....++...+..+....|..|++++|...
T Consensus 88 l~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~lt~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~ 162 (172)
T 2ldk_A 88 LEFDDGFADEHGAPVDELGVTHATVKLEPLE-NRTRMTIISTFESE---EQMQKMAEMGMEEGMREAIEQIDAVLSEPA 162 (172)
T ss_dssp EEEEEEEBCSSCCBCTTTCEEEEEEEEEEET-TEEEEEEEEEESCH---HHHHHHHHHTHHHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEeecCCCCCccCCCccEEEEEEEEEcC-CCEEEEEEEEcCCH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence 999865421 12467788999986 46999998776321 111223333457888999999999988643
|
| >3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=85.77 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=102.9
Q ss_pred eeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHH-hccCcccccCcCCcEEEEEEeeCCEEE-EEEEecc---cee-
Q 004764 327 EVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVM-TAYETLPEIVPNLAISKILSRENNKVR-ILQEGCK---GLL- 400 (732)
Q Consensus 327 Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vL-tDyE~yPef~P~V~ssrVLer~~g~~r-v~q~g~~---gll- 400 (732)
.|..+..++ .+ +.+.+...|++|++.|+++| .|++..++|.+.+.++++++..++... +++.... +.+
T Consensus 44 ~vy~~~~~~----~g--~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~y~~~~~~~~~~v~ 117 (221)
T 3p0l_A 44 KVMSKVVPD----VG--KVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVG 117 (221)
T ss_dssp EEEEEECSS----SC--EEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTTCSEEEEEEECSSSEEEEEEEECC---CCSC
T ss_pred EEEEEEcCC----Cc--eEEEEEEEEcCCHHHHHHHHHhccchhhhcCcchheEEEEEecCCCeEEEEEeeccccCCccC
Confidence 455665432 23 55778888999999999998 699999999999999999998654432 2222111 111
Q ss_pred EEEEEEEEEEEEEee-CCCeE-EEEEEe--------cCCc--ceeEEEEEEEcCCC--eEEEEEEEEEEeccCccchHHH
Q 004764 401 YMVLHARVVMDICEQ-HEQEI-SFEQVE--------GDFD--SFQGKWLFEQLGSH--HTLLKYSVESKMQKNSLLSEAI 466 (732)
Q Consensus 401 ~~~~~~rvvLdv~e~-~~rrI-sf~~ve--------Gdfk--~f~G~W~Lep~gdG--~TrVty~v~~ep~~d~~Lp~~l 466 (732)
..-|.. ++.... ....+ ..+.++ |-.+ .+.+.|.++|.++| .|+|+|...++|+ +++|.++
T Consensus 118 ~RDfv~---~r~~~~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~--G~iP~~l 192 (221)
T 3p0l_A 118 PRDFVS---VRCAKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLK--GWLPKSI 192 (221)
T ss_dssp CEEEEE---EEEEEECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECC--SSCCHHH
T ss_pred CceEEE---EEEEEEcCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCC--CCCCHHH
Confidence 111111 111111 22222 223333 2222 34688999999876 8999999999985 6799999
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 004764 467 MEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 467 v~r~lr~~l~~~L~ALK~rAE 487 (732)
++.++...+...+++||++++
T Consensus 193 vn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 193 INQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987
|
| >2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-06 Score=79.96 Aligned_cols=129 Identities=10% Similarity=0.081 Sum_probs=86.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCccccc-CcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEI-VPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef-~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
.+..++.|+||+++||++++|.+.+++| ++. +..+++--+.|+..++...+..|.....+..++ +++ .++++
T Consensus 2 ~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v-~e~--~p~~~ 78 (144)
T 2lgh_A 2 KISIEAHIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTF-TRV--EAPTR 78 (144)
T ss_dssp EEEEEEEESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEE-EEE--ETTTE
T ss_pred EEEEEEEeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEEECCCCCCEEEEEEECCCCCceEEeEEEE-EEE--eCCCE
Confidence 4778899999999999999999999999 753 122333233566656555544443112333332 122 47899
Q ss_pred EEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 420 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 420 Isf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
|.|+. .| .....|+|++.+ ++|+|++.... +. . .. ...........|..|++++|..
T Consensus 79 l~~~~-~~---~~~~~~~l~~~~-~gT~l~~~~~~-~~--~-~~----~~~~~~Gw~~~L~~L~~~le~~ 135 (144)
T 2lgh_A 79 LSFVM-DD---GREVDVQFASEP-GGTWVQETFDA-ET--S-HT----PAQQQAGWQGILDNFKRYVEAA 135 (144)
T ss_dssp EEEEE-TT---CCEEEEEEEEET-TEEEEEEEEEC-CT--T-SC----HHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEe-cC---CcEEEEEEEEcC-CCEEEEEEEEC-CC--H-HH----HHHHHHHHHHHHHHHHHHHhhC
Confidence 99985 33 357899999986 47999988765 21 1 11 2235668888999999999864
|
| >2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=80.10 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=84.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCccccc-CcC--C--cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEI-VPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef-~P~--V--~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
.+..++.|+||+++||++|+|.+++++| ++. + ..+.+-.+.|+..++......|.....+..++ +++ .++++
T Consensus 2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v-~~~--~p~~~ 78 (142)
T 2lcg_A 2 NITVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTY-TKV--VENKR 78 (142)
T ss_dssp EEEEEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEE-EEE--ETTTE
T ss_pred eEEEEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEE-EEE--cCCCE
Confidence 4778899999999999999999999999 653 1 11222223455555544443332112233332 122 47799
Q ss_pred EEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 420 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 420 Isf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
|.|+. .| ....|+|++.++ +|+|++...... ... ...+..+....|..|+++++...
T Consensus 79 l~~~~-~g----~~~~~~l~~~~~-gT~l~~~~~~~~---~~~-----~~~~~~Gw~~~L~~L~~~le~~~ 135 (142)
T 2lcg_A 79 IEYAF-GD----RTAKVEFLEAPQ-GVTVRVSFVAET---EYP-----VEQQQQGWQAILNNFKRHVESHL 135 (142)
T ss_dssp EEEEE-TT----EEEEEEEEEETT-EEEEEEEEECCS---SSC-----HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEc-CC----CEEEEEEEEcCC-CEEEEEEEecCC---HHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 23 678899999874 699999866521 111 13356688889999999998653
|
| >1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=83.01 Aligned_cols=138 Identities=10% Similarity=0.073 Sum_probs=87.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcC--Cc--EEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPN--LA--ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~--V~--ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..+..++.|+||+++||++|+|.+.+++|++. +. .+.+--+.|+..++......|.. ..+..++ +++ .++++
T Consensus 10 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~~~v-~e~--~p~~r 85 (178)
T 1xfs_A 10 LDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNK-FPNSGCF-LEV--TDEKR 85 (178)
T ss_dssp TEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCE-EEEEEEE-EEE--ETTTE
T ss_pred ceEEEEEEecCCHHHHHHHhCCHHHHhhCCCCCCeeeeEEEEeeECCcEEEEEEECCCCCE-EEEEEEE-EEE--eCCCE
Confidence 45788889999999999999999999999764 21 22222334565555444434422 2233332 122 47789
Q ss_pred EEEEEEe-c---CCc------------ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 004764 420 ISFEQVE-G---DFD------------SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 483 (732)
Q Consensus 420 Isf~~ve-G---dfk------------~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK 483 (732)
|.|+..- + +.. .....|+|++.++ +|+|++...+.. ......++...+..+....|..|+
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~ 161 (178)
T 1xfs_A 86 LIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-GTRYTACAMHNT---PGQRKLHEEMGFHEGWGTTITQLE 161 (178)
T ss_dssp EEEESSEEGGGEECCC-----------CCEEEEEEEECSS-SEEEEEEEECSS---HHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCccccccccccccccccEEEEEEEEECCC-CEEEEEEEEcCC---HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9998542 1 111 3578899999875 699999877531 101111111224678889999999
Q ss_pred HHHHhh
Q 004764 484 DYVEKR 489 (732)
Q Consensus 484 ~rAE~~ 489 (732)
+++|..
T Consensus 162 ~~le~~ 167 (178)
T 1xfs_A 162 ELLKQE 167 (178)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999876
|
| >2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.2e-06 Score=75.32 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=87.5
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
...++.++.|+||++.||++|||.+++++|++... + ..+...|++.++....... .+ .....+.+.. ++
T Consensus 4 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~-~-~~~~~~G~~~~~~~~~~g~--~~----~~~~~v~~~~---p~ 72 (146)
T 2leq_A 4 KLIAQVKTVINAPIEKVWEALVNPEIIKEYMFGTT-V-VSDWKEGSQIVWKGEWKGK--AY----EDKGTILQFN---ER 72 (146)
T ss_dssp CEEEEEEEEECSCHHHHHHHHSCTTHHHHHSSSCE-E-ECCCSTTCEEEEEEEETTE--EE----EEEEEEEEEE---TT
T ss_pred CceEEEEEEECCCHHHHHHHHcCHHHhceeEcCCc-c-eeccCCCCEEEEEecCCCc--ee----cccEEEEEEc---CC
Confidence 35799999999999999999999999999963222 1 1122345554333111110 11 1122334443 36
Q ss_pred ceEEEEEEcc-------ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 173 RELYFSMVDG-------DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 173 rrI~F~~veG-------Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++|.|+...+ +-......|.|++. +++|+|+++....|.. .....+.......|..||+.+|..
T Consensus 73 ~~l~~~~~~~~~g~~~~~~~~~~~~~~l~~~--~~gT~l~~~~~~~~~~-----~~~~~~~~gw~~~l~~Lk~~le~~ 143 (146)
T 2leq_A 73 SILQYSHFSPLTGKPDLPENYHVVTITLTAL--KKGVEVELTQDNNETE-----KEQKHSEDNWNTMLEGLKKFLENK 143 (146)
T ss_dssp TEEEEECBCGGGCCCSCGGGSCEEEEEEEEC--SSCEEEEEEEEEESSH-----HHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEEccCccCCCCCCCCceEEEEEEEEc--CCCeEEEEEEecCCch-----hhHhhHHhhHHHHHHHHHHHHhcc
Confidence 8899887532 11256788999996 4679999988754432 345667788889999999999874
|
| >2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-06 Score=81.42 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=91.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcC--C--cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-eCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~--V--~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~r 418 (732)
..+..++.|+||+++||++++|.+.++.|++. + ..+++--+.|+..++...+.+|.. ..+..+ +.+ .+++
T Consensus 16 ~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~----v~e~~p~~ 90 (175)
T 2lf2_A 16 KTITIKREFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTKSMDFKEGGTWLYAMVGPNGEE-HWSICE----YAIIKPIE 90 (175)
T ss_dssp TEEEEEEEESSCHHHHHHHHTCHHHHHHSSSSSSSEEEEEEECCSTTCEEEEEEECSSSCE-EEEEEE----ECCCCSSS
T ss_pred ceEEEEEEEcCCHHHHHHHhCCHHHHhhCcCCCCccceEEEEeccCCCEEEEEEECCCCCE-EEeEEE----EEEEcCCC
Confidence 45889999999999999999999999999753 1 222332335666665555445533 222333 333 4678
Q ss_pred eEEEEEEecC--------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 419 EISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 419 rIsf~~veGd--------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
+|+|.-.-++ +......|+|++.+ ++|+|++...+.+ .-.-..++...+..+....|..|++++|...
T Consensus 91 rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~---~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~ 166 (175)
T 2lf2_A 91 RFTGKDGFTDASGKLNTEMPRSNWDMRFIDKG-EITEVQYHISYDD---VAQLEATIQMGFKEGITMAMENLDELLVSGK 166 (175)
T ss_dssp EEEEEEEEESSTTCCCTTSCCEEEEEEEEEET-TEEEEEEEEECSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEecCC---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhCc
Confidence 9999865321 12467888999986 4699999876532 1111223333467888999999999998764
Q ss_pred C
Q 004764 491 G 491 (732)
Q Consensus 491 ~ 491 (732)
.
T Consensus 167 ~ 167 (175)
T 2lf2_A 167 K 167 (175)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.6e-06 Score=78.77 Aligned_cols=130 Identities=12% Similarity=0.147 Sum_probs=86.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCccccc-CcC--C--cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEI-VPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef-~P~--V--~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
.+..++.|+||+++||++|+|.+.+++| ++. + ..+++--+.|+..++...+..|.....+..++ +++ .++++
T Consensus 3 ~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v-~e~--~p~~~ 79 (144)
T 2l8o_A 3 KITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVY-DQV--KTNDL 79 (144)
T ss_dssp SEEEEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEE-EEE--ETTTE
T ss_pred EEEEEEEECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEE-EEE--eCCCE
Confidence 3778899999999999999999999999 763 2 22233233466666655544443112233332 122 47899
Q ss_pred EEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 420 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 420 Isf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
|.|.. .| .....|+|++.+ ++|+|++.... +. ... ...........|..|++.+|...
T Consensus 80 l~~~~-~g---~~~v~~~l~~~~-~gT~l~~~~~~-~~--~~~-----~~~~~~Gw~~~L~~L~~~le~~~ 137 (144)
T 2l8o_A 80 IEYTI-GD---GRKVRIVFTHTG-DTTNIVESFDP-EE--TNP-----RELQQSGWQAILNSFKSYTENNL 137 (144)
T ss_dssp EEEEE-TT---CCEEEEEEEECS-SSEEEEEEECC-CS--SSC-----HHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEe-CC---CeEEEEEEEEcC-CCEEEEEEEeC-CC--HHH-----HHHHHHHHHHHHHHHHHHHHhHh
Confidence 99985 33 357889999986 46999998665 21 111 22346678889999999988753
|
| >3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.3e-06 Score=79.49 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=90.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..+..++.|+||+++||++|+|.+.+++|++.- ..+.+--+.|+..++...+.+|.. ..+..++ +++ .++++
T Consensus 13 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~p~~r 88 (164)
T 3pu2_A 13 TRLEFRRHFAATPEQLWAALTSPALLPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRT-RGLTGRV-ILA--EPPHR 88 (164)
T ss_dssp TEEEEEEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEE-EEE--ETTTE
T ss_pred ceEEEEEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCE-EEEEEEE-EEE--cCCCE
Confidence 568999999999999999999999999999731 223332334666665555545532 2333332 122 47799
Q ss_pred EEEEEEe-c--CCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 420 ISFEQVE-G--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 420 Isf~~ve-G--dfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
|.|.-.- + .-......|+|++.++ +|+|++...+.. .-..+.++...+...-...|..|++++++..
T Consensus 89 l~~t~~~~~~~~~~~s~vt~~l~~~~~-gT~l~l~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~l~~~~ 158 (164)
T 3pu2_A 89 LIHSELYDEDWTGGETLVTLQLLPVEG-GTELAMAVDYAT---PEARDAVAASAMATEMEEAYRHLDVMLAALE 158 (164)
T ss_dssp EEEEEBCC---CCSCEEEEEEEEEETT-EEEEEEEEECSS---TTHHHHHHTSTHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEeccCCCCCCCEEEEEEEEEcCC-CEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 9998642 1 1123577889999875 599999877532 1122223334567788899999999888753
|
| >1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.8e-06 Score=84.56 Aligned_cols=140 Identities=10% Similarity=0.027 Sum_probs=97.2
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC-EEEEEEEecc--c--eeEEEEEEEEEEEEEe-eCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN-KVRILQEGCK--G--LLYMVLHARVVMDICE-QHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g-~~rv~q~g~~--g--ll~~~~~~rvvLdv~e-~~~ 417 (732)
+.+.+...|++|+++|+++|.|.+..++|.+++.++++++.-++ ...+++.... + +...-|... +... ..+
T Consensus 67 ~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~id~~~~I~y~~~~~~~~~~v~~RDfv~~---r~~~~~~~ 143 (224)
T 1jss_A 67 YLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDF---SYTVGYEE 143 (224)
T ss_dssp EEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEE---EEEEEETT
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccccccccceeeEEEEEEcCCCeEEEEEEcccccCCCCCCCeEEEE---EEEEEcCC
Confidence 45788888999999999999999999999999999999988544 3333333211 1 111112211 1111 122
Q ss_pred Ce-EEEEEEe------cCCc--ceeEEEEEEEcCCC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 418 QE-ISFEQVE------GDFD--SFQGKWLFEQLGSH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 418 rr-Isf~~ve------Gdfk--~f~G~W~Lep~gdG--~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
.. +....++ |-++ .+.|.|.++|.+++ .|+|+|.+..+|+ +++|.++++.++...+...+++||+++
T Consensus 144 ~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~~ 221 (224)
T 1jss_A 144 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLR--GMIPQSAVDTAMASTLANFYSDLRKGL 221 (224)
T ss_dssp EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECC--SCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCC--CCccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22 2223332 2222 34588999998654 7999999999985 679999999999999999999999987
Q ss_pred Hh
Q 004764 487 EK 488 (732)
Q Consensus 487 E~ 488 (732)
++
T Consensus 222 ~~ 223 (224)
T 1jss_A 222 RK 223 (224)
T ss_dssp C-
T ss_pred hh
Confidence 64
|
| >3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0 | Back alignment and structure |
|---|
Probab=98.42 E-value=6.2e-06 Score=80.31 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=94.7
Q ss_pred ecCcceeEEEEEEEecCHHHHHHH-HhCcccc-cccccc-ceEEEEEecCC-CCeeEEEEEeeeeeEEEEEEEEEEEEEE
Q 004764 89 VSWRERRIKAEMLVNADVDSVWNA-LTDYERL-ADFVPN-LACSGRIPCPY-PGRIWLEQRGLQRALYWHIEARVVLDLQ 164 (732)
Q Consensus 89 v~~~~rrV~asi~V~AP~e~Vw~V-LTDYErl-peFiP~-v~~SeVLe~~~-ggrirv~Qvg~~~il~~~~~arvvLdv~ 164 (732)
...+...++.++.|+||+++||++ +.|+.++ |.|+|. ++++++++-.+ .|.+|.+.........+. ...+.
T Consensus 5 ~~Mg~~~~~~ev~i~a~a~kvw~~~v~d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~-----kErl~ 79 (165)
T 3ie5_A 5 FTMAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYM-----LHKFD 79 (165)
T ss_dssp -CCSCEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEE-----EEEEE
T ss_pred ceeeeEEEEEEEEecCCHHHHHHHhcCCccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceE-----EEEEE
Confidence 344556799999999999999999 5899999 999996 67676666421 135555544322111111 11222
Q ss_pred EeecCCCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHH
Q 004764 165 ELIHSASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALA 237 (732)
Q Consensus 165 E~~~~~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk 237 (732)
... ...+.++|++++|| ++.|....++.+ .+++|.+.+.+...+... ++..-++ ..++-...+++++-
T Consensus 80 ~iD--~~~~~~~Y~iieG~~l~~~~~~y~~~i~v~~--~~ggs~vkwt~~y~~~~~~~~~~e~~k-~~~~~~~~~~K~ie 154 (165)
T 3ie5_A 80 EID--AANFYCKYTLFEGDVLRDNIEKVVYEVKLEA--VGGGSKGKITVTYHPKPGCTVNEEEVK-IGEKKAYEFYKQVE 154 (165)
T ss_dssp EEE--GGGTEEEEEEEEEGGGTTTEEEEEEEEEEEE--ETTEEEEEEEEEEEECTTCCCCHHHHH-HHHHHHHHHHHHHH
T ss_pred EEc--hhcCEEEEEEecCCCCccceEEEEEEEEEEe--CCCceEEEEEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHHH
Confidence 222 46899999999997 789999999994 357899999999987553 3333222 22333445566666
Q ss_pred HHHHh
Q 004764 238 CRAER 242 (732)
Q Consensus 238 ~raEr 242 (732)
+.+.+
T Consensus 155 ~ylla 159 (165)
T 3ie5_A 155 EYLAA 159 (165)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
|
| >2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-06 Score=86.73 Aligned_cols=145 Identities=13% Similarity=0.105 Sum_probs=92.7
Q ss_pred EEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEEe-eCCEEEEEEEe-c-cceeEEEEEEEEEEEEEee--C---
Q 004764 346 VVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSR-ENNKVRILQEG-C-KGLLYMVLHARVVMDICEQ--H--- 416 (732)
Q Consensus 346 V~asI~I-~APpE~VW~vLtDyE~yPef~P~V~ssrVLer-~~g~~rv~q~g-~-~gll~~~~~~rvvLdv~e~--~--- 416 (732)
+.+...| ++|+++|++++.|++.+++|.+.+.++++++. +++...+++.. . ..+...-+........... .
T Consensus 75 ~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~i~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~ 154 (255)
T 2e3n_A 75 LKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDP 154 (255)
T ss_dssp EEEEEEEETCCHHHHHHHHHCGGGHHHHCCSEEEEEEEEEEETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSC
T ss_pred EEEEEEEcCCCHHHHHHHHhCcchHhhhhhhcceeEEEEEcCCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCC
Confidence 5555555 49999999999999999999999999999998 55653333321 1 1111111111100000000 0
Q ss_pred CCe-EEEEEEecC--------Ccce--------------eEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHh
Q 004764 417 EQE-ISFEQVEGD--------FDSF--------------QGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYE 473 (732)
Q Consensus 417 ~rr-Isf~~veGd--------fk~f--------------~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~ 473 (732)
+.. +....+..+ .+.. .|.|.|++ ++++|+|+|...++|+ +++|.++++.+...
T Consensus 155 ~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~-~~~~t~vt~~~~~Dp~--G~iP~~lvn~~~~~ 231 (255)
T 2e3n_A 155 ETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISR-DNILCKITYVANVNPG--GWAPASVLRAVAKR 231 (255)
T ss_dssp CEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCG-GGEEEEEEEEEEEECS--SCCCHHHHHHHHHH
T ss_pred CEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCccccc-CCCcEEEEEEEEeCCC--CccCHHHHHHHHhc
Confidence 001 111122111 1111 15566666 4467999999999985 68999999999999
Q ss_pred hHHHHHHHHHHHHHhhhCCC
Q 004764 474 DLPSNLCAIRDYVEKREGDN 493 (732)
Q Consensus 474 ~l~~~L~ALK~rAE~~~~~~ 493 (732)
.++..|+.|++++++...+.
T Consensus 232 ~~~~~l~~L~k~v~~~~~~~ 251 (255)
T 2e3n_A 232 EYPKFLKRFTSYVQEKTAGK 251 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHhccCC
Confidence 99999999999999876654
|
| >2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=81.20 Aligned_cols=136 Identities=10% Similarity=0.111 Sum_probs=87.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcC--C--cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-eCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPN--L--AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~--V--~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~r 418 (732)
..+..++.|+||+++||++++|.+.++.|++. + ..+++--+.|+..++...+.+|.. . +..+ +.+ .+++
T Consensus 8 ~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~-~~g~----v~e~~p~~ 81 (164)
T 2l9p_A 8 NKIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMIS-Y-TIAE----YLQVDAPY 81 (164)
T ss_dssp SEEEECCEESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEE-E-EEEE----ESCCBTTT
T ss_pred ceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCE-E-EEEE----EEEEcCCC
Confidence 45888899999999999999999999999763 1 122221223444454444334432 1 3333 333 4678
Q ss_pred eEEEEEEecC--------CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 419 EISFEQVEGD--------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 419 rIsf~~veGd--------fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
+|+|+-..++ +......|+|++.++ +|+|++...+... .....++...+..+....|..|++++|+.
T Consensus 82 rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~~---~~~~~~~~~~~~~Gw~~~L~~L~~~le~~ 156 (164)
T 2l9p_A 82 YIEYLDYFATSKGEKDTSMPGMHITLNFEEVKG-KTTVTSTSTFPTE---SAAQQAIDMGVETGMNSTLNQLEKLLNQK 156 (164)
T ss_dssp EEEEEEEEEBTTBSCCSSSCCEEEEEEECCCSS-SEEEEEEEECSST---THHHHHHHHTHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEEEecCCCCCccCCCCceEEEEEEEECCC-CEEEEEEEEcCCH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 9999865321 224577888988764 6999998765321 11223333346778889999999998865
|
| >1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.39 E-value=6.9e-07 Score=82.80 Aligned_cols=130 Identities=14% Similarity=0.233 Sum_probs=85.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.++.|+||+++||++|+|.++|++|+|.+ .+-.+.|+..++.. ..|. +..++ +++ .++++|.|+
T Consensus 8 ~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~---~~~~~~G~~~~~~~--~~g~----~~~~v-~e~--~p~~~l~~~ 75 (143)
T 1xn6_A 8 NDIKQTIVFNASIQKVWSVVSTAEGIASWFMPN---DFVLEVGHEFHVQS--PFGP----SPCKV-LEI--DEPNHLSFS 75 (143)
T ss_dssp CCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCB---CCCCCTTCEECBCC--TTCC----CCEEE-EEE--ETTTEEEEE
T ss_pred CEEEEEEEEcCCHHHHHHHHhCHhHHHHhcCCC---CcCcCCCCEEEEEE--cCCC----ceEEE-EEE--eCCCEEEEE
Confidence 568899999999999999999999999999983 22112344433222 1232 12221 122 467899987
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHHh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVEK 488 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp-----~~lv~r~lr~~l~~~L-~ALK~rAE~ 488 (732)
...+ .....|+|++.++|+|+|++....-+..+...| ..-....+.......| ..|++++|+
T Consensus 76 ~~~~---~~~~~~~l~~~~~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~~L~~~le~ 143 (143)
T 1xn6_A 76 WDTD---GWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG 143 (143)
T ss_dssp ETTT---TEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred EeCC---CEEEEEEEEECCCCcEEEEEEEEccCccccccccccchhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 6433 457889999988767999998763221000011 1223346777889999 999998873
|
| >1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=72.69 Aligned_cols=135 Identities=15% Similarity=0.069 Sum_probs=87.0
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccc--e-EEEEEecCCCCeeEEEEE-eeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNL--A-CSGRIPCPYPGRIWLEQR-GLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v--~-~SeVLe~~~ggrirv~Qv-g~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..++.++.|+||++.||++|||-+++++|++.- . ....++...|++.+.... +.... ...+. ..+.+..
T Consensus 3 ~~~~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~-~~~~~----~~v~~~~-- 75 (147)
T 1z94_A 3 NTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQ-KHAFG----GRYLELV-- 75 (147)
T ss_dssp CCEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCC-EEEEE----EEEEEEE--
T ss_pred cEEEEEEEeCCCHHHHHHHhCCHHHHhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCC-EEEEE----EEEEEEc--
Confidence 357888999999999999999999999999853 1 111223345565543322 10000 01111 2233443
Q ss_pred CCCceEEEEEEcc--ccc-eeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 170 ASDRELYFSMVDG--DFK-KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 170 ~~~rrI~F~~veG--Dfk-~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++++|.|+...+ ++. .....|.|++.+ ++|+|++.....|... ....+.......|..|++.+|+.
T Consensus 76 -p~~~l~~~~~~~~~~~~~~~~~~~~l~~~~--~gT~l~~~~~~~~~~~-----~~~~~~~gw~~~L~~L~~~le~~ 144 (147)
T 1z94_A 76 -PGERIRYTDRFDDAGLPGDMITTITLAPLS--CGADLSIVQEGIPDAI-----PPENCYLGWQQSLKQLAALVEPD 144 (147)
T ss_dssp -TTTEEEEEEEESCCC---CEEEEEEEEEET--TEEEEEEEEECCCTTS-----CHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -CCCEEEEEEEEeCCCCCCcEEEEEEEEecC--CCEEEEEEEEcCCchh-----hHHHHHHHHHHHHHHHHHHHHhh
Confidence 368999987644 232 567899999964 6899999988754321 23445677888999999988864
|
| >3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.3e-06 Score=76.94 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=81.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
.|+.++.|+||+++||++|+|.+.+++|++. .+..--+.|+..++...+. + .....++ +++ .++++|.|+.
T Consensus 2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~--~~~~~~~~Gg~~~~~~~~~-~---~~~~~~v-~~~--~p~~~l~~~~ 72 (135)
T 3q6a_A 2 DIITKMQVDVPRETVFEAFVDPEKIGGFWFS--SSSERWEQGKTITLRYEEY-D---AELNINI-ERV--EDNQLIAFTW 72 (135)
T ss_dssp CEEEEEEESSCHHHHHHHHHCTTTGGGTSSS--EESSCCCTTCEEEEECGGG-T---C-CEEEE-EEE--ETTTEEEEEE
T ss_pred eEEEEEEeCCCHHHHHHHHcCHHHhcccCCC--CCcccccCCCEEEEEEcCc-C---ceEEEEE-EEE--cCCCEEEEEE
Confidence 3788999999999999999999999999764 2222122345444322111 1 1122221 122 4778999986
Q ss_pred EecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 425 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 425 veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
..| ...|+|++.+ ++|+|++....-+. . ... ........-..+|..|++++|...
T Consensus 73 ~~g-----~~~~~l~~~~-~gT~l~~~~~~~~~--~-~~~--~~~~~~~GW~~~l~~L~~~le~g~ 127 (135)
T 3q6a_A 73 GAH-----PITIQFEESE-AGTVVTTTEKDFDT--Q-DVK--QLLGQKEGWVYMLSCLKVYLEHGV 127 (135)
T ss_dssp TTE-----EEEEEEEEET-TEEEEEEEECCCCS--S-CHH--HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCC-----eEEEEEEECC-CCEEEEEEEcCCCc--c-hHH--HHhhchhCHHHHHHHHHHHHhcCc
Confidence 532 7789999976 67999988653221 1 111 124567788899999999999753
|
| >3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-05 Score=76.57 Aligned_cols=139 Identities=16% Similarity=0.023 Sum_probs=86.8
Q ss_pred ceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEee
Q 004764 341 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQ 415 (732)
Q Consensus 341 g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V-----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~ 415 (732)
-....+..++.|+||+++||++++|.+.+++|++.. ..+++--+.|+..++.....+|.. ..+..++ +++ .
T Consensus 5 ~~~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~ 80 (161)
T 3rd6_A 5 VIHSTFTIERTYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEFSFDFRVGGGEVSRFSYGGGPE-VRLDAQF-QDI--V 80 (161)
T ss_dssp EEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHTCCCCC---CEEEECCSTTCEEEEEECSTTSCC-EEEEEEE-EEE--E
T ss_pred ccCceEEEEEEECCCHHHHHHHhcCHHHHhhccCCCCCceeeEEEEccCcCCEEEEEEECCCCCE-EEEEEEE-EEE--c
Confidence 334678889999999999999999999999999543 122332334566555443333422 2233332 122 4
Q ss_pred CCCeEEEEEEe---c-CCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 416 HEQEISFEQVE---G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 416 ~~rrIsf~~ve---G-dfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
++++|.|.-.- | +.......|+|++.++ +|+|++....-+..+... ......+-...|..|+++++..
T Consensus 81 p~~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~-----~~~~~~GW~~~L~~L~~~le~~ 152 (161)
T 3rd6_A 81 PDQRIVFSYRMAIGPQPMSASLTTVELTPSGD-GTRLTYTEQGAFFDGVDS-----AKGREEGTRGLLEALAAELQKW 152 (161)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTCCC-----HHHHHHHHHHHHHHHHHHC---
T ss_pred CCCEEEEEEEecCCCCCCCceEEEEEEEECCC-CEEEEEEEEecCcchhhh-----HHHHHHHHHHHHHHHHHHHhhc
Confidence 77899998652 2 1224567889999875 599999876432111001 1345678888999999987754
|
| >2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-06 Score=86.07 Aligned_cols=158 Identities=10% Similarity=-0.024 Sum_probs=105.3
Q ss_pred cCCceEEEEEEec-Cc-ceeEEEEEEEecCHHHHH-HHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEE
Q 004764 78 EQRKVHCEVEVVS-WR-ERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154 (732)
Q Consensus 78 ~e~~v~v~v~~v~-~~-~rrV~asi~V~AP~e~Vw-~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~ 154 (732)
...+|.|+.+.++ +. .+.++++..|+++++.|+ .+|.| .++|.+++.++++|+.-+++.-.++.+-.... .
T Consensus 57 ~~~gi~V~~k~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~~~I~y~~~~~p~---p 130 (237)
T 2pso_A 57 STDNTDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQTEIYQYVLNSMA---P 130 (237)
T ss_dssp CSSSCEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTEEEEEEEECCSS---S
T ss_pred cCCCeEEEEEEcCCCCCcEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhceEEEEEEcCCCcEEEEEEecCCC---C
Confidence 4578999999874 33 467899999999998875 68888 69999999999999875554433333221100 0
Q ss_pred EEEEEEEEEEEee-c-CCCCceEEEEEEcc-------c--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHH
Q 004764 155 IEARVVLDLQELI-H-SASDRELYFSMVDG-------D--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLER 223 (732)
Q Consensus 155 ~~arvvLdv~E~~-~-~~~~rrI~F~~veG-------D--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~ 223 (732)
...|=.+.++... . ....--|..+.++. - ...+.|.|.++|.+ +++|.|+|-+.++|++++|.++ ++
T Consensus 131 ~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~-~~~t~vt~~~~~Dp~G~iP~~l-n~ 208 (237)
T 2pso_A 131 HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG-SGKSRLTHICRIDLKGHSPEWY-SK 208 (237)
T ss_dssp CCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECS-TTCEEEEEEEEECCSSSCTTTT-TT
T ss_pred cCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECC-CCCEEEEEEEEeCCCCCchHHH-HH
Confidence 0000000001000 0 00111122222211 1 14567999999985 5789999999999999999999 99
Q ss_pred HHHhCHHHHHHHHHHHHHhh
Q 004764 224 IIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 224 ~ir~~L~~~L~ALk~raEr~ 243 (732)
++.+.++..|.+||+.+++.
T Consensus 209 ~~~~~~~~~l~~LR~~~~~~ 228 (237)
T 2pso_A 209 GFGHLCAAEVARIRNSFQPL 228 (237)
T ss_dssp HHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999977654
|
| >3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-05 Score=75.25 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=91.0
Q ss_pred eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcC-----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeC
Q 004764 342 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH 416 (732)
Q Consensus 342 ~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~-----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~ 416 (732)
.+..+..++.|+||+++||++++|.+.+.+|+.. +..+++--+.|+..++.....+|.. ..+..++ +++ .+
T Consensus 7 ~~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~G~~-~~~~g~v-~ev--~p 82 (166)
T 3put_A 7 EHTTFVIERRLTAPVARVFRAWSTPESKRQWFACHGEWVPLEYALDFRPGGTERNYTADTDGLL-HAYDARY-IDI--VP 82 (166)
T ss_dssp EEEEEEEEEEESSCHHHHHHHHHCHHHHHHHHTCC---CCSEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--ET
T ss_pred CcceEEEEEEECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEEeCcccCCEEEEEEECCCCCE-EEEEEEE-EEE--cC
Confidence 3467899999999999999999999999999842 2333443345666666554444532 2233332 122 47
Q ss_pred CCeEEEEEEe---c-CCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 417 EQEISFEQVE---G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 417 ~rrIsf~~ve---G-dfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
+++|+|.-.- | +.......|+|++.+ ++|+|++....-+..+... ......+-...|..|++++|...
T Consensus 83 ~~rlv~t~~~~~~~~~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~~-----~~~~~~GW~~~L~~L~~~le~~~ 154 (166)
T 3put_A 83 DTRIIYAYEMKLGQTRISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYGD-----NGARLQGTEIGLDNLELFLVRET 154 (166)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEEEEEECS-SSEEEEEEEEEEEETTCCC-----TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEEEecCCCCCCCceEEEEEEEECC-CCEEEEEEEEecCccchhh-----HHHHHHHHHHHHHHHHHHHhcCC
Confidence 7899988642 2 122356788999987 4699999866432111101 13456788889999999998763
|
| >2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-06 Score=83.20 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=92.5
Q ss_pred eEEEEEEEecCHHHHHHHH-h-Ccccc-ccccccc-eEEEEEecCCC--CeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 95 RIKAEMLVNADVDSVWNAL-T-DYERL-ADFVPNL-ACSGRIPCPYP--GRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VL-T-DYErl-peFiP~v-~~SeVLe~~~g--grirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
.++.++.|+||+++||+++ . |+.++ |+|+|.+ ++++++ . +| |.+|.+..+......+. ...+....
T Consensus 30 ~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-G-dGg~GsIR~lt~~~G~~~~~v-----kErle~iD- 101 (201)
T 2vq5_A 30 VIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-G-DGGVGTILDMTFVPGEFPHEY-----KEKFILVD- 101 (201)
T ss_dssp EEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-S-SSSTTCEEEEECCTTCSSCEE-----EEEEEEEE-
T ss_pred EEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-c-CCCCCeEEEEEecCCCcccEE-----EEEEEEEc-
Confidence 5889999999999999995 6 99999 9999976 666776 3 33 34555433322111111 11222222
Q ss_pred CCCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 169 SASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 169 ~~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
...+.++|++++|| ++.|....+|.+.+ +++|.++|.++..+.......--....+..+..++++|.+.+.+
T Consensus 102 -de~~~~sYsiieGd~l~~~~~~y~~tikv~p~~-dggs~vkWt~~ye~~~~~~~~~e~~~~~~~~~~~~KaiE~yLla 178 (201)
T 2vq5_A 102 -NEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTG-KDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLVLE 178 (201)
T ss_dssp -TTTTEEEEEEEEEGGGGTTEEEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGHHHHTTTCCSHHHHHHHHHHHHHHHS
T ss_pred -hhhCEEEEEEEecCccccceeEEEEEEEEEECC-CCCeEEEEEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999996 68999999999975 46899999999998766511111113344455566666665544
|
| >1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-05 Score=81.37 Aligned_cols=140 Identities=9% Similarity=0.088 Sum_probs=97.7
Q ss_pred EEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEEeeCCEE-EEEEEecc---c-eeEEEEEEEEEEEEEeeCCC
Q 004764 345 CVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRENNKV-RILQEGCK---G-LLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 345 ~V~asI~I~APpE~VW-~vLtDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~---g-ll~~~~~~rvvLdv~e~~~r 418 (732)
.+.+...|++|+++|+ +++.|.+..++|.+.|.++++++..++.. .+++.... . +...-|.. ++.....+.
T Consensus 67 ~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~~~~~vle~~~~~t~I~~~~~~p~~~~~~~~RDfv~---~r~~~~~~~ 143 (229)
T 1em2_A 67 TFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVN---VRRIERRRD 143 (229)
T ss_dssp EEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEE---EEEEEECSS
T ss_pred eEEEEEEecCCHHHHHHHHHhCccchhhcccccceEEEEEecCCCeEEEEEEecCcCCCCcCCCeeEE---EEEEEEcCC
Confidence 3567778899999999 99999999999999999999998864433 23333211 1 11111211 112212222
Q ss_pred e--EEEEEEec--------CCc--ceeEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 419 E--ISFEQVEG--------DFD--SFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 419 r--Isf~~veG--------dfk--~f~G~W~Lep~g--dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
. |..+.+.. ..+ .+.+.|.++|.+ ++.|.|+|....+|. +++|.++++.++...+...+..||+
T Consensus 144 ~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~--G~iP~~l~n~~~~~~~~~~~~~Lr~ 221 (229)
T 1em2_A 144 RYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLK--GRLPRYLIHQSLAATMFEFAFHLRQ 221 (229)
T ss_dssp EEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECC--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33334432 122 345789999975 467999999999985 5799999999999999999999999
Q ss_pred HHHhh
Q 004764 485 YVEKR 489 (732)
Q Consensus 485 rAE~~ 489 (732)
++++.
T Consensus 222 ~~~~~ 226 (229)
T 1em2_A 222 RISEL 226 (229)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
|
| >2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.8e-05 Score=72.43 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=88.5
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
...++.++.|+||++.||++|||-+++++|++.- ..+ ..+...||+.+..-.+..+-. +.+. -.+.+..
T Consensus 13 ~~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~p~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~~-~~~~----~~v~e~~- 85 (171)
T 2il5_A 13 HVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEI-EADVKEGGKYRIVDQQRNGKV-NVIE----GIYESLV- 85 (171)
T ss_dssp EEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEE-EECCSTTCEEEEEEECGGGCE-EEEE----EEEEEEE-
T ss_pred CceEEEEEEeCCCHHHHHHHHCCHHHHHhccCCCCccceEE-EecccCCCEEEEEEECCCCCE-EEEE----EEEEEEc-
Confidence 3569999999999999999999999999998642 222 234445666544322211110 1111 2233433
Q ss_pred CCCCceEEEEEEcccc--ceeeEEEEEEecCCCCeeEEEEEEEEecCC--CccH-------HHHHHHHHhCHHHHHHHHH
Q 004764 169 SASDRELYFSMVDGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFPA-------IFLERIIRSDLPVNLQALA 237 (732)
Q Consensus 169 ~~~~rrI~F~~veGDf--k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~--piP~-------~Lv~~~ir~~L~~~L~ALk 237 (732)
++++|.|+...++. ....-.|.|++.+ +++|+|++.....+.. .++. .-....+.......|..|+
T Consensus 86 --p~~rl~~~~~~~~~~~~~~~~~~~l~~~~-~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~ 162 (171)
T 2il5_A 86 --MDEYVKMTIGMPGLSETQDVIEVEFFERE-TGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMY 162 (171)
T ss_dssp --TTTEEEEEESCC--CCCCEEEEEEEEECS-SSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEEEEecCCCCCcEEEEEEEEECC-CCCEEEEEEEEeccCcccccccchhccchhHHHHHHHHHHHHHHHHHH
Confidence 36899998764432 2467789999964 3389999988654431 1211 1223345677888899999
Q ss_pred HHHHhh
Q 004764 238 CRAERS 243 (732)
Q Consensus 238 ~raEr~ 243 (732)
+.+|..
T Consensus 163 ~~le~~ 168 (171)
T 2il5_A 163 HVIETS 168 (171)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 998865
|
| >2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-06 Score=81.39 Aligned_cols=130 Identities=14% Similarity=0.051 Sum_probs=85.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..++.|+||+++||++|+|.+.++.|++.+.... -+.|+..++...+ +. .+..++ +++ .++++|.|+
T Consensus 9 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~--~~~Gg~~~~~~~g--~~---~~~~~v-~e~--~p~~~l~~~ 78 (160)
T 2lak_A 9 FVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEVE--PEPGGLYLVNVTG--AR---FARGSF-REV--VPVHRLAYS 78 (160)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSSEEES--CSTTCCEEECSST--TC---CSSCCE-EEE--ETTTEEEEC
T ss_pred ceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCcceee--ccCCCEEEEEEeC--Cc---eEEEEE-EEE--cCCCEEEEE
Confidence 5688999999999999999999999999998754332 2345544432221 10 111221 112 467899988
Q ss_pred EEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 424 QVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 424 ~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
..-++ .......|+|++.++ +|+|++....-+ .......+.......|..|++++|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~-------~~~~~~~~~~gw~~~L~~Lk~~le~~~~ 143 (160)
T 2lak_A 79 FGWDGSEVVPPGSSLVEIDLIEQGG-GTLLRLTHSGLP-------SAEQCAGHEEGWAHYLGRLTEVAAGRDP 143 (160)
T ss_dssp CCCCSSSCCCTTSCEEEEEEEECSS-SEEEEEEEECCC-------SHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred EEecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEeCCC-------CHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 64321 125688999999875 599998765211 1112344567788999999999987543
|
| >2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-05 Score=72.47 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=83.4
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccc-cccc----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADF-VPNL----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeF-iP~v----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
.++.++.|+||++.||++|||.+++++| ++.- ..++ .+...|++.+..-.+...-..+. ....+.+..
T Consensus 2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~-~d~~~Gg~~~~~~~~~~g~~~~~----~~~~v~~~~-- 74 (142)
T 2lcg_A 2 NITVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAAT-VDLREGGAFSSRMEAKDGSMGFD----FAGTYTKVV-- 74 (142)
T ss_dssp EEEEEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEE-ECCSTTCEEEEEEEETTSSCEEE----EEEEEEEEE--
T ss_pred eEEEEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeE-EccccCCEEEEEEEcCCCCceee----eEEEEEEEc--
Confidence 4788999999999999999999999999 6642 1222 23345565543322211100011 112234443
Q ss_pred CCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 170 ASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 170 ~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
++++|.|+. .| ....|.|++.+ ++|+|++.....+... ...+.......|..|++.++..+
T Consensus 75 -p~~~l~~~~-~g----~~~~~~l~~~~--~gT~l~~~~~~~~~~~------~~~~~~Gw~~~L~~L~~~le~~~ 135 (142)
T 2lcg_A 75 -ENKRIEYAF-GD----RTAKVEFLEAP--QGVTVRVSFVAETEYP------VEQQQQGWQAILNNFKRHVESHL 135 (142)
T ss_dssp -TTTEEEEEE-TT----EEEEEEEEEET--TEEEEEEEEECCSSSC------HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -CCCEEEEEc-CC----CEEEEEEEEcC--CCEEEEEEEecCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999987 33 77889999964 6899999876532211 13456678888999999988764
|
| >3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-05 Score=81.42 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=109.8
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEA 157 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~a 157 (732)
...+|+|+....++ ...++++..|++|++.||++|.|.+..++|.+++.++++|+.-+++. .+++....... +-...
T Consensus 73 ~~~gv~Vy~~~~~~-~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~~-ivY~~~~p~~~-~~v~~ 149 (258)
T 3fo5_A 73 EISQVRLYTLEDDK-FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDD-AIYHVTSPALG-GHTKP 149 (258)
T ss_dssp EETTEEEEEEECSS-CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETTE-EEEEEEECCCT-TCSSC
T ss_pred cCCCeEEEEEECCC-ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCCe-EEEEEecCCcc-CCCCC
Confidence 34689999977554 55789999999999999999999999999999999999998755553 34544321110 00000
Q ss_pred E--EEEEEEEeecCCCCc--eEEEEEEcc-------cc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHH
Q 004764 158 R--VVLDLQELIHSASDR--ELYFSMVDG-------DF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLER 223 (732)
Q Consensus 158 r--vvLdv~E~~~~~~~r--rI~F~~veG-------Df---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~ 223 (732)
| +.+.....+. ..+. -|..+-+.- .| ....+.|.++|.+ +++|+|+|-..++|+. +|.++++.
T Consensus 150 RDFV~lr~~r~~~-~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~-~~~t~VtY~~q~dpG~-lP~~~~n~ 226 (258)
T 3fo5_A 150 QDFVILASRRKPC-DNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREG-DQLTKVSYYNQATPGV-LNYVTTNV 226 (258)
T ss_dssp EEEEEEEEEECCS-STTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEE-TTEEEEEEEESCCGGG-HHHHHHHH
T ss_pred CEEEEEEEEEecc-CCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECC-CCCEEEEEEEeeCCCC-CCceEEec
Confidence 0 1111111111 1122 344444432 12 4567999999986 6789999999999966 99999987
Q ss_pred -HHHhCHHHHHHHHHHHHHhh
Q 004764 224 -IIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 224 -~ir~~L~~~L~ALk~raEr~ 243 (732)
.+.+.+...+.+|++.++..
T Consensus 227 ~g~s~~~~~t~~~~~~fl~~~ 247 (258)
T 3fo5_A 227 AGLSSEFYTTFKACEQFLLDN 247 (258)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHhc
Confidence 44555578888999988875
|
| >2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-05 Score=71.52 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=83.6
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccc-ccc----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADF-VPN----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeF-iP~----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
.++.++.|+||++.||++|||-+++++| ++. +..++ .+...||+.+..-.+..+-..+.+. -.+.+..
T Consensus 2 ~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~-~d~~~Gg~~~~~~~~~~G~~~~~~~----g~v~e~~-- 74 (144)
T 2lgh_A 2 KISIEAHIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSR-VDLVVGGRFCHHMAAKDGSAGFDFT----GTFTRVE-- 74 (144)
T ss_dssp EEEEEEEESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEE-ECCSTTCEEEEEEEETTSSCEEEEE----EEEEEEE--
T ss_pred EEEEEEEeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEE-ECCCCCCEEEEEEECCCCCceEEeE----EEEEEEe--
Confidence 4788999999999999999999999999 764 12222 2344666654442221111011111 1223333
Q ss_pred CCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 170 ASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 170 ~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++++|.|+. .| .....|+|++. +++|+|++.....+.. . ...........|..|++.+|..
T Consensus 75 -p~~~l~~~~-~~---~~~~~~~l~~~--~~gT~l~~~~~~~~~~--~----~~~~~~Gw~~~L~~L~~~le~~ 135 (144)
T 2lgh_A 75 -APTRLSFVM-DD---GREVDVQFASE--PGGTWVQETFDAETSH--T----PAQQQAGWQGILDNFKRYVEAA 135 (144)
T ss_dssp -TTTEEEEEE-TT---CCEEEEEEEEE--TTEEEEEEEEECCTTS--C----HHHHHHHHHHHHHHHHHHHHHS
T ss_pred -CCCEEEEEe-cC---CcEEEEEEEEc--CCCEEEEEEEECCCHH--H----HHHHHHHHHHHHHHHHHHHhhC
Confidence 468999985 34 35678999996 4689999887763221 1 2235667788899999998874
|
| >2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-05 Score=76.22 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=98.7
Q ss_pred EEEEEEEEEcCCHHHHHHHH--hccCcccccCcCCcEEEEEEeeCCEE-EEEEEecc---ceeEEEEEEEEEEEEEee-C
Q 004764 344 RCVVASITVKAPVSEVWNVM--TAYETLPEIVPNLAISKILSRENNKV-RILQEGCK---GLLYMVLHARVVMDICEQ-H 416 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vL--tDyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~---gll~~~~~~rvvLdv~e~-~ 416 (732)
..+.+...|++|+++|+++| .|.+..++|.+.+.++++++..++.. .+++.... +.+ .-..-+.++.+.. .
T Consensus 67 ~~~k~~~~v~~~~~~v~~~l~~~d~~~r~~Wd~~~~~~~vle~i~~~~~i~~~~~~~~~~~~v--~~RDfv~~r~~~~~~ 144 (231)
T 2r55_A 67 NLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLI--SPRDFVDLVLVKRYE 144 (231)
T ss_dssp EEEEEEEEESSCHHHHHHHHCC--CCSHHHHCTTCSEEEEEEECSSSEEEEEEECCCBTTTTB--CCEEEEEEEEEEECT
T ss_pred cEEEEEEEECCCHHHHHHHHHhhCcchhhhhccccceeEEEEEcCCCEEEEEEEeccccCCcc--CCCeEEEEEEEEEcC
Confidence 55788888999999999999 99999999999999999998865433 33333211 111 1111112222222 2
Q ss_pred CCe--EEEEEEecC--------Cc--ceeEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 004764 417 EQE--ISFEQVEGD--------FD--SFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI 482 (732)
Q Consensus 417 ~rr--Isf~~veGd--------fk--~f~G~W~Lep~g--dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~AL 482 (732)
+.. |....++.+ ++ .+.+.|.++|.+ ++.|.|+|...++|. +++|..+++.++...+...++.|
T Consensus 145 ~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~L 222 (231)
T 2r55_A 145 DGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLS--GYLPQNVVDSFFPRSMTRFYANL 222 (231)
T ss_dssp TSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECC--SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCC--CCccHHHHHHHHhHhHHHHHHHH
Confidence 332 345555421 22 345789999975 568999999999985 57999999999999999999999
Q ss_pred HHHHHhh
Q 004764 483 RDYVEKR 489 (732)
Q Consensus 483 K~rAE~~ 489 (732)
++++++.
T Consensus 223 r~~~~~~ 229 (231)
T 2r55_A 223 QKAVKQF 229 (231)
T ss_dssp HHHHHGG
T ss_pred HHHHHHh
Confidence 9999865
|
| >3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-05 Score=73.75 Aligned_cols=139 Identities=14% Similarity=0.038 Sum_probs=90.6
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V-----~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
...+..++.|+||+++||++++|.+.+++|++.. ..+++--+.|+..++.....+|.. ..+..++ +++ .++
T Consensus 8 ~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~p~ 83 (162)
T 3q64_A 8 HSTFIIERLYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFEMDFRVGGKEVNAGGPKDGPI-HVYTATY-QDI--VPD 83 (162)
T ss_dssp EEEEEEEEEESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCEECCSTTCEEEEEECCTTSCC-EEEEEEE-EEE--ETT
T ss_pred cceEEEEEEeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEEECCccCCEEEEEEECCCCCE-EEEEEEE-EEE--cCC
Confidence 3678889999999999999999999999999553 123333345666655444334422 2233332 122 477
Q ss_pred CeEEEEEEe---cC-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 418 QEISFEQVE---GD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 418 rrIsf~~ve---Gd-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
++|.|.-.- |. .......|+|++.++ +|+|++....-+..+... ......+-...|..|++++|...-
T Consensus 84 ~rl~~~~~~~~~~~~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~-----~~~~~~GW~~~L~~L~~~le~~~~ 155 (162)
T 3q64_A 84 QRIVYSYDMLFGETRISVSLATIQLFAEGE-GTRLVLTEQGAFLDGHDT-----PSTREHGTGVLLDLLDAFLDKTTL 155 (162)
T ss_dssp TEEEEEEEEEETTEEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTSSC-----HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCCCCCceEEEEEEEEcCC-CEEEEEEEEecCccchhH-----HHHHHHHHHHHHHHHHHHHhhchh
Confidence 899998652 21 224467889999875 599999876432110001 135567888999999999987643
|
| >2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-05 Score=74.04 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=92.7
Q ss_pred EEEEEEEEEcCCHHHHHHH-HhccCcc-cccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNV-MTAYETL-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~v-LtDyE~y-Pef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..++.++.+++||+.+|++ +.|+.++ |.++|.+.++.-++.++ |.++.+.....+ ..-....+ ++........
T Consensus 4 ~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~veGdg~~Gsir~~t~~~g~-~~~~~kEr--le~iD~~~~~ 80 (154)
T 2wql_A 4 QSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGDGGAGTVRIITLPEGS-PITTMTVR--TDAVNKEALS 80 (154)
T ss_dssp CEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEESSSSTTCEEEEECCTTC-SCCEEEEE--EEEEETTTTE
T ss_pred eEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEEEECCCCCCeEEEEEEcCCC-CceEEEEE--EEEEehhhCE
Confidence 3578999999999999975 5899985 99999865553355543 345544333222 11122333 3334456689
Q ss_pred EEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 420 ISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 420 Isf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
+.|+.++|+ +..+...-.+.|.++|+|.+.+...|++.++...++-.+... ......+++++.++.
T Consensus 81 ~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~-~~~~~~~~KaiEayL 151 (154)
T 2wql_A 81 YDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFA-DAQNTALFKAIEAYL 151 (154)
T ss_dssp EEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHH-HHHHHhHHHHHHHHH
Confidence 999999986 336677889999988899999999999876554554433332 233456666666654
|
| >2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.23 E-value=9e-06 Score=79.90 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=81.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..++.|+||++.||++|+|.+.+++|+|.+...+ -+.|+..++...+ . ....++ +++ .++++|.|+
T Consensus 36 ~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~d--~~~Gg~~~~~~~~----~--~~~~~v-~e~--~p~~rl~~~ 104 (184)
T 2nn5_A 36 IYFGTERAISASPQTIWRYLTETDKLKQWFPELEIGE--LGVNGFWRFILPD----F--EETMPF-TDY--AEEKYLGVT 104 (184)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEE--CSTTCEEEEEETT----E--EEEEEE-EEE--ETTTEEEEE
T ss_pred cEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCccccc--cCCCCEEEEEEeC----C--CceEEE-EEe--cCCCEEEEE
Confidence 6799999999999999999999999999998654322 2345555543321 1 112221 122 477889887
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
-. .....|+|++..+++|+|++...+.. + ++.. ...........|..|++++|..
T Consensus 105 ~~-----~~~v~~~l~~~~~~gT~l~~~~~~~~--g--~~~~--~~~~~~GW~~~L~~Lk~~le~g 159 (184)
T 2nn5_A 105 WD-----TGIIYFDLKEQAPHQTLLVFSESLPE--N--FTTP--RHKDIAGWSIVLNRLKQVVETP 159 (184)
T ss_dssp ET-----TEEEEEEEEEEETTEEEEEEEEEECT--T--CSSC--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred Ec-----CeEEEEEEEECCCCCEEEEEEEeccC--C--ccch--hhHHHHHHHHHHHHHHHHHhcC
Confidence 53 25778999993345799999843321 1 1111 1125567888999999999854
|
| >2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.9e-06 Score=76.93 Aligned_cols=129 Identities=14% Similarity=0.028 Sum_probs=87.0
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
...|+.++.|+||++.||++|||.+++++|++..... +...||+.+..-.|.. . + . ..+.+.. ++
T Consensus 8 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~---~~~~Gg~~~~~~~g~~-~--~--~----~~v~e~~---p~ 72 (160)
T 2lak_A 8 SFVVRREAHLAAPPAAVFALMTDPEKILRWMGTEAEV---EPEPGGLYLVNVTGAR-F--A--R----GSFREVV---PV 72 (160)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHCHHHHHHTSCSSEEE---SCSTTCCEEECSSTTC-C--S--S----CCEEEEE---TT
T ss_pred CceEEEEEEeCCCHHHHHHHhcChHHHhhhCCCccee---eccCCCEEEEEEeCCc-e--E--E----EEEEEEc---CC
Confidence 4579999999999999999999999999999986543 3345666543212221 0 0 1 1122332 36
Q ss_pred ceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 173 RELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 173 rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++|.|+..-++ -......|+|++. +++|+|++....-+. + -....+.......|..|++.+|+.
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~gT~l~~~~~~~~~---~--~~~~~~~~gw~~~L~~Lk~~le~~ 141 (160)
T 2lak_A 73 HRLAYSFGWDGSEVVPPGSSLVEIDLIEQ--GGGTLLRLTHSGLPS---A--EQCAGHEEGWAHYLGRLTEVAAGR 141 (160)
T ss_dssp TEEEECCCCCSSSCCCTTSCEEEEEEEEC--SSSEEEEEEEECCCS---H--HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CEEEEEEEecCCCCCCCCcEEEEEEEEEC--CCCEEEEEEEeCCCC---H--HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888765332 2356788999996 468999998763222 1 223445667889999999999875
|
| >3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-06 Score=76.71 Aligned_cols=133 Identities=10% Similarity=-0.044 Sum_probs=83.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCC----c--EEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL----A--ISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V----~--ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
..+..++.|+||+++||++++|.+.+.+|++.- . .+.+--+.|+..++...+.+|.. .....++ +++ .++
T Consensus 2 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~-~~~~g~v-~e~--~p~ 77 (152)
T 3eli_A 2 ADLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQR-YKVSGQV-THV--KPP 77 (152)
T ss_dssp CEEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCE-EEEEEEE-EEE--ETT
T ss_pred ceEEEEEEECCCHHHHHHHHcCHHHHhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCE-EEEEEEE-EEE--cCC
Confidence 457889999999999999999999999998741 1 12222234455555444444432 2333332 122 477
Q ss_pred CeEEEEEEecCC-----cceeEEEEEEEcCCCeEEEEEEEE-EEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 418 QEISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 418 rrIsf~~veGdf-----k~f~G~W~Lep~gdG~TrVty~v~-~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
++|+|.-...+. ......|+|++.++| |+|++... +.. .. ........-...|..|++++|--
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~g-T~l~l~~~~~~~------~~--~~~~~~~GW~~~L~~L~~~l~~~ 146 (152)
T 3eli_A 78 QSVGFTWGWHDDDDRRGAESHVMFIVEPCAKG-ARLILDHRELGD------DE--MSLRHEEGWTSSLRKLAAELALE 146 (152)
T ss_dssp TEEEEEEEEECTTSCEEEEEEEEEECCBC--C-EEEEEEEESCSC------HH--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEeecCCCCCCCCcEEEEEEEEECCCC-EEEEEEEccCCC------HH--HHHHHHHHHHHHHHHHHHHHhhh
Confidence 899988654221 244667788887755 99988643 211 11 23456678889999999988743
|
| >1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00013 Score=70.36 Aligned_cols=137 Identities=9% Similarity=0.000 Sum_probs=87.4
Q ss_pred cceeEEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEee
Q 004764 92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELI 167 (732)
Q Consensus 92 ~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~ 167 (732)
....++.++.|+||++.||++|||-+++++|++.- ..+ .++...||+.+....+...-. +.+. -.+.+..
T Consensus 20 ~~~~i~~~r~i~Ap~e~Vw~altdpe~~~~W~~~~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~~-~~~~----~~v~e~~ 93 (178)
T 1xuv_A 20 GKQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALK-IFEPKNGGSWQYIQKDPEGNE-YAFH----GVNHDVT 93 (178)
T ss_dssp TCSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEE-EECCSTTCEEEEEEECTTSCE-EEEE----EEEEEEE
T ss_pred CCcEEEEEEEECCCHHHHHHHhCCHHHHHhCCCCCCccceEE-EEecccCCEEEEEEECCCCCE-EEEE----EEEEEEe
Confidence 34568999999999999999999999999998642 122 223345666544322211110 1111 2233433
Q ss_pred cCCCCceEEEEEEccc----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH----HHhCHHHHHHHHHHH
Q 004764 168 HSASDRELYFSMVDGD----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI----IRSDLPVNLQALACR 239 (732)
Q Consensus 168 ~~~~~rrI~F~~veGD----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~----ir~~L~~~L~ALk~r 239 (732)
++++|.|+..-++ -......|.|++.+ +++|+|++...+. +....... +.......|..|++.
T Consensus 94 ---p~~rl~~~~~~~~~~~~~~~~~v~~~l~~~~-~ggT~lt~~~~~~-----~~~~~~~~~~~~~~~Gw~~~L~~Lk~~ 164 (178)
T 1xuv_A 94 ---EPERIISTFEFEGLPEKGHVILDTARFEALP-GDRTKLTSHSVFQ-----TIEDRDGMLQSGMEEGINDSYERLDEL 164 (178)
T ss_dssp ---TTTEEEEEEEETTSSSSCCCEEEEEEEEEET-TTEEEEEEEEECS-----SHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEEEEecCCCCCCCcEEEEEEEEEcC-CCCEEEEEEEEeC-----CHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3688998876322 22467789999863 3689999988742 22222322 357788899999999
Q ss_pred HHhh
Q 004764 240 AERS 243 (732)
Q Consensus 240 aEr~ 243 (732)
+|..
T Consensus 165 le~~ 168 (178)
T 1xuv_A 165 LEKM 168 (178)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
| >3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=73.65 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=82.7
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+|+.++.|+||++.||++|||.+++++|.+.- + ..+...|++.+..-.+ .. ......+.+.. ++++
T Consensus 2 ~i~~~~~i~ap~e~Vw~altd~~~~~~W~~~~--~-~~~~~~Gg~~~~~~~~-~~-------~~~~~~v~~~~---p~~~ 67 (135)
T 3q6a_A 2 DIITKMQVDVPRETVFEAFVDPEKIGGFWFSS--S-SERWEQGKTITLRYEE-YD-------AELNINIERVE---DNQL 67 (135)
T ss_dssp CEEEEEEESSCHHHHHHHHHCTTTGGGTSSSE--E-SSCCCTTCEEEEECGG-GT-------C-CEEEEEEEE---TTTE
T ss_pred eEEEEEEeCCCHHHHHHHHcCHHHhcccCCCC--C-cccccCCCEEEEEEcC-cC-------ceEEEEEEEEc---CCCE
Confidence 47889999999999999999999999997652 2 1122345554332111 10 01112233443 3689
Q ss_pred EEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 175 LYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 175 I~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
|.|+...| ...|.|++. +++|+|+++..-.|... ... .......-...|..|++.+|..
T Consensus 68 l~~~~~~g-----~~~~~l~~~--~~gT~l~~~~~~~~~~~--~~~-~~~~~~GW~~~l~~L~~~le~g 126 (135)
T 3q6a_A 68 IAFTWGAH-----PITIQFEES--EAGTVVTTTEKDFDTQD--VKQ-LLGQKEGWVYMLSCLKVYLEHG 126 (135)
T ss_dssp EEEEETTE-----EEEEEEEEE--TTEEEEEEEECCCCSSC--HHH-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEcCC-----eEEEEEEEC--CCCEEEEEEEcCCCcch--HHH-HhhchhCHHHHHHHHHHHHhcC
Confidence 99987653 678999995 47899999866433332 111 2456777788999999999975
|
| >2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-05 Score=72.28 Aligned_cols=131 Identities=10% Similarity=0.158 Sum_probs=83.8
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccc-ccc--c--eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADF-VPN--L--ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeF-iP~--v--~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
+.++.++.|+||++.||++|||-+++++| ++. . ... .++.+.||+.+....+...-..+.+. -.+.+..
T Consensus 2 ~~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~~~~~~~----g~v~e~~- 75 (144)
T 2l8o_A 2 NKITVEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAA-QNDLKAGGTFTTTMAAKDGSMSFDFG----GVYDQVK- 75 (144)
T ss_dssp CSEEEEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEE-ECCCSTTCEEEEEEECTTSSCEEEEE----EEEEEEE-
T ss_pred cEEEEEEEECCCHHHHHHHHCCHHHHhhccCCCCCccccee-EEccCCCCEEEEEEECCCCCceeeee----EEEEEEe-
Confidence 35889999999999999999999999999 764 2 222 22334666654443321111001111 1233333
Q ss_pred CCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 169 SASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 169 ~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
++++|.|+.. | .....|.|++. +++|+|++.... +.. .. ...+.......|..|++.+|..+
T Consensus 76 --p~~~l~~~~~-g---~~~v~~~l~~~--~~gT~l~~~~~~-~~~-~~----~~~~~~Gw~~~L~~L~~~le~~~ 137 (144)
T 2l8o_A 76 --TNDLIEYTIG-D---GRKVRIVFTHT--GDTTNIVESFDP-EET-NP----RELQQSGWQAILNSFKSYTENNL 137 (144)
T ss_dssp --TTTEEEEEET-T---CCEEEEEEEEC--SSSEEEEEEECC-CSS-SC----HHHHHHHHHHHHHHHHHHHGGGT
T ss_pred --CCCEEEEEeC-C---CeEEEEEEEEc--CCCEEEEEEEeC-CCH-HH----HHHHHHHHHHHHHHHHHHHHhHh
Confidence 4789999853 4 35678999995 468999998665 221 11 23356677788999999888753
|
| >1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.5e-06 Score=75.78 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=85.8
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
...++.++.|+||++.||++|||.+++++|+|.+. .+...|++.++. ..... + ...+.+.. ++
T Consensus 7 ~~~i~~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~----~~~~~G~~~~~~-~~~g~-~--------~~~v~e~~---p~ 69 (143)
T 1xn6_A 7 LNDIKQTIVFNASIQKVWSVVSTAEGIASWFMPND----FVLEVGHEFHVQ-SPFGP-S--------PCKVLEID---EP 69 (143)
T ss_dssp CCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBC----CCCCTTCEECBC-CTTCC-C--------CEEEEEEE---TT
T ss_pred CCEEEEEEEEcCCHHHHHHHHhCHhHHHHhcCCCC----cCcCCCCEEEEE-EcCCC-c--------eEEEEEEe---CC
Confidence 34699999999999999999999999999999832 233345553222 11111 1 12233433 36
Q ss_pred ceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCC--Cc------cHHHHHHHHHhCHHHHH-HHHHHHHH
Q 004764 173 RELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NF------PAIFLERIIRSDLPVNL-QALACRAE 241 (732)
Q Consensus 173 rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~--pi------P~~Lv~~~ir~~L~~~L-~ALk~raE 241 (732)
++|.|+...+ .....|.|++.+ +++|+|+++...-+.. .. ..... ..+...-...| ..|++.+|
T Consensus 70 ~~l~~~~~~~---~~~~~~~l~~~~-~g~T~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gw~~~l~~~L~~~le 142 (143)
T 1xn6_A 70 NHLSFSWDTD---GWVVSFDLKDLG-DNKTEFTLIHGGWKHPDEILPKANAKSSIIR-DRMSGGWVAIVNEKLKKVVE 142 (143)
T ss_dssp TEEEEEETTT---TEEEEEEEEEEE-TTEEEEEEEEECCCSTTCBCTTTCSBHHHHH-HHHHHHHHHHHTTHHHHHHH
T ss_pred CEEEEEEeCC---CEEEEEEEEECC-CCcEEEEEEEEccCccccccccccchhhHHH-HHHHHhHHHHHHHHHHHHhc
Confidence 8899987554 456789999964 3489999988865543 11 22333 46777788899 99999876
|
| >2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.5e-05 Score=72.94 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=87.3
Q ss_pred EEEecCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEE
Q 004764 86 VEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQE 165 (732)
Q Consensus 86 v~~v~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E 165 (732)
+.....+ ..++.++.|+||++.||++|||.+++++|+|..... +...||+.+..-.+ . . ....+.+
T Consensus 29 ~~~~~~~-~~i~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~---d~~~Gg~~~~~~~~-~---~------~~~~v~e 94 (184)
T 2nn5_A 29 FRLENQT-IYFGTERAISASPQTIWRYLTETDKLKQWFPELEIG---ELGVNGFWRFILPD-F---E------ETMPFTD 94 (184)
T ss_dssp EEEETTE-EEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEE---ECSTTCEEEEEETT-E---E------EEEEEEE
T ss_pred hhcCCCC-cEEEEEEEeCCCHHHHHHHHcCHHHHHHhCCCcccc---ccCCCCEEEEEEeC-C---C------ceEEEEE
Confidence 3344444 579999999999999999999999999999976533 33466665443222 1 1 1123344
Q ss_pred eecCCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 166 LIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 166 ~~~~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
.. ++++|.|+.. + ..-.|.|++.. +++|+|+++-.+.-+++-.. ..........|..|++.+|...
T Consensus 95 ~~---p~~rl~~~~~-~----~~v~~~l~~~~-~~gT~l~~~~~~~~g~~~~~----~~~~~GW~~~L~~Lk~~le~g~ 160 (184)
T 2nn5_A 95 YA---EEKYLGVTWD-T----GIIYFDLKEQA-PHQTLLVFSESLPENFTTPR----HKDIAGWSIVLNRLKQVVETPD 160 (184)
T ss_dssp EE---TTTEEEEEET-T----EEEEEEEEEEE-TTEEEEEEEEEECTTCSSCH----HHHHHHHHHHHHHHHHHHHCTT
T ss_pred ec---CCCEEEEEEc-C----eEEEEEEEECC-CCCEEEEEEEeccCCccchh----hHHHHHHHHHHHHHHHHHhcCC
Confidence 43 3678888763 2 56689999832 46899999933332233221 1255677788999999998653
|
| >2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00014 Score=69.50 Aligned_cols=135 Identities=10% Similarity=0.042 Sum_probs=87.5
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
...++.++.|+||++.||++|||-+++++|++.- ..+ ..+.+.||+.+..-.+...-.+. ..-.+.+..
T Consensus 11 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~-~~d~~~Gg~~~~~~~~~~g~~~~-----~~~~v~e~~- 83 (172)
T 2ldk_A 11 ALSFSIVAEFDADVKRVWAIWEDPRQLERWWGPPTWPATFE-THEFTVGGKAAYYMTGPDGTKAR-----GWWQFTTIE- 83 (172)
T ss_dssp TTEEEEEEEESSCHHHHHHHHHCHHHHHTTSSCTTSCEEEE-EECCSTTCEEEEEEECTTSCEEE-----EEEEEEEEC-
T ss_pred CceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCcccceE-EEeecCCCEEEEEEECCCCCEEe-----eEEEEEEEc-
Confidence 4579999999999999999999999999997642 222 22444566654432221111111 112234443
Q ss_pred CCCCceEEEEEEccc--------cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH----HHHHhCHHHHHHHH
Q 004764 169 SASDRELYFSMVDGD--------FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE----RIIRSDLPVNLQAL 236 (732)
Q Consensus 169 ~~~~rrI~F~~veGD--------fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~----~~ir~~L~~~L~AL 236 (732)
++++|.|+..-++ +....-.|.|++. +++|+|++..... +..... ..+.......|..|
T Consensus 84 --p~~rl~~~~~~~~~~g~p~~~~~~~~v~~~l~~~--~~gT~lt~~~~~~-----~~~~~~~~~~~~~~~Gw~~~L~~L 154 (172)
T 2ldk_A 84 --APDHLEFDDGFADEHGAPVDELGVTHATVKLEPL--ENRTRMTIISTFE-----SEEQMQKMAEMGMEEGMREAIEQI 154 (172)
T ss_dssp --SSSEEEEEEEEBCSSCCBCTTTCEEEEEEEEEEE--TTEEEEEEEEEES-----CHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred --CCCEEEEEEeecCCCCCccCCCccEEEEEEEEEc--CCCEEEEEEEEcC-----CHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4688988875321 2357788999996 4689999988753 222222 23477788899999
Q ss_pred HHHHHhh
Q 004764 237 ACRAERS 243 (732)
Q Consensus 237 k~raEr~ 243 (732)
++.+|..
T Consensus 155 ~~~le~~ 161 (172)
T 2ldk_A 155 DAVLSEP 161 (172)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9988864
|
| >3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=5.2e-05 Score=73.09 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=89.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..+..++.|+||++.||++++|-+.+..|+.. +..+++--+.|+..++...+.+|.. ..+..++ +++ .++++
T Consensus 13 ~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~G~~-~~~~g~~-~ev--~p~~r 88 (168)
T 3uid_A 13 LTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVVDHDLRPGGRVTYFMTGPDGEK-YAGYWEI-TAV--DEPHS 88 (168)
T ss_dssp TEEEEEEEESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--ETTTE
T ss_pred CEEEEEEEEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEEEEcccCCcEEEEEEECCCCCE-EeeEEEE-EEE--eCCcE
Confidence 45888999999999999999999999999643 2223332345666666555555532 2233332 122 47789
Q ss_pred EEEEEEe----cC----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 420 ISFEQVE----GD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 420 Isf~~ve----Gd----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
|+|.-.- |. .......|+|++.+ ++|+|+++..+.. ....+.++...+..+....|..|+++++...
T Consensus 89 lv~t~~~~~~~g~p~~~~~~s~vt~~l~~~~-~gT~lt~~~~~~~---~~~~~~~~~~g~~~GW~~~L~~L~~~l~~~~ 163 (168)
T 3uid_A 89 FSFLDGFADEDFNPNTDLPVSTNVYTFTEHD-GGTRATYVGTYAS---AEALQQVLDMGVIEGASSAINQIDALLTATH 163 (168)
T ss_dssp EEEEEEEECTTSCBCSSCCCEEEEEEEEEET-TEEEEEEEEECSC---HHHHHHHHHTTHHHHHHHHHHHHHHHTCSCC
T ss_pred EEEEEeeccCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEecCC---HHHHHHHHHhcHHHHHHHHHHHHHHHHHhhh
Confidence 9988642 21 12457889999986 5799999854421 1011222222367788899999999877543
|
| >3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.8e-05 Score=72.41 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=83.1
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
...+..++.|+||+++||++|+|.+.+++|++. +.+-.+.|+..++. +..+. .+..++ +++ .++++|.|
T Consensus 8 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~---~~~~~~~Gg~~~~~--~~~g~---~~~g~v-~e~--~p~~~l~~ 76 (151)
T 3q63_A 8 NRTVVVERQISHPPEKLWRALTQPHLIEEWLMK---NDFKPAVGHRFNIS--ADWGG---VLDCEV-LAV--EPNKTLSY 76 (151)
T ss_dssp -CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCE---ECCCSSTTCEEEEE--CTTSC---EEEEEE-EEE--ETTTEEEE
T ss_pred CCeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCc---CCCccCCCCEEEEE--CCCCC---EEEEEE-EEE--eCCCEEEE
Confidence 467889999999999999999999999999984 22222345554443 33332 223332 122 47789999
Q ss_pred EEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 423 EQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 423 ~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
+...++ .......|+|++.++| |+|++....-+. +. .. ........-...|..|++++|..
T Consensus 77 ~~~~~~~~~~~~~~s~v~~~l~~~~~g-T~l~l~~~g~~~-~~---~~-~~~~~~~GW~~~L~~L~~~le~~ 142 (151)
T 3q63_A 77 TWNLAHQDPAFDLRSVVTFTLTPTPTG-THLRMEQSGFRP-DQ---RR-AYGGAKMGWPQFFEKLEQLLDRT 142 (151)
T ss_dssp ECBBCCSSTTTCBCCEEEEEEEECSSS-EEEEEEEECCCT-TC---HH-HHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCCCCCCCeEEEEEEEEcCCC-EEEEEEEeCCCc-ch---HH-HHHhhhhCHHHHHHHHHHHHhcc
Confidence 865321 1234677899998765 999988652221 11 11 12345677788899999998865
|
| >1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00011 Score=70.68 Aligned_cols=134 Identities=12% Similarity=0.049 Sum_probs=85.1
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCcccccccccc--ce--EEEEEecCCCCeeEEEEEee-eeeEEEEEEEEEEEEEEEee
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPN--LA--CSGRIPCPYPGRIWLEQRGL-QRALYWHIEARVVLDLQELI 167 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~--v~--~SeVLe~~~ggrirv~Qvg~-~~il~~~~~arvvLdv~E~~ 167 (732)
...++.++.|+||++.||++|||-+++++|++. +. .+ .++...||+.+..-.+. ..... + .-.+.+..
T Consensus 9 ~~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~p~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~~~~--~----~~~v~e~~ 81 (178)
T 1xfs_A 9 ELDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDC-RVDLRPGGEFYTVMQDPEGNKFP--N----SGCFLEVT 81 (178)
T ss_dssp TTEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEE-EECCSTTCEEEEEEECTTCCEEE--E----EEEEEEEE
T ss_pred CceEEEEEEecCCHHHHHHHhCCHHHHhhCCCCCCeeeeEE-EEeeECCcEEEEEEECCCCCEEE--E----EEEEEEEe
Confidence 446889999999999999999999999999764 21 22 22334566654432221 11111 1 12233433
Q ss_pred cCCCCceEEEEEEccc----cc------------eeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHH----HHh
Q 004764 168 HSASDRELYFSMVDGD----FK------------KFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERI----IRS 227 (732)
Q Consensus 168 ~~~~~rrI~F~~veGD----fk------------~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~----ir~ 227 (732)
++++|.|+..-++ .. .....|.|++. +++|+|++..... +....... +..
T Consensus 82 ---p~~rl~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~--~~gT~l~~~~~~~-----~~~~~~~~~~~~~~~ 151 (178)
T 1xfs_A 82 ---DEKRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPT--SSGTRYTACAMHN-----TPGQRKLHEEMGFHE 151 (178)
T ss_dssp ---TTTEEEEESSEEGGGEECCC-----------CCEEEEEEEEC--SSSEEEEEEEECS-----SHHHHHHHHTTTHHH
T ss_pred ---CCCEEEEEEEEcCCCCccccccccccccccccEEEEEEEEEC--CCCEEEEEEEEcC-----CHHHHHHHHhhhHHH
Confidence 3688888764211 11 46678999995 4689999988742 22222322 367
Q ss_pred CHHHHHHHHHHHHHhh
Q 004764 228 DLPVNLQALACRAERS 243 (732)
Q Consensus 228 ~L~~~L~ALk~raEr~ 243 (732)
.....|..|++.+|..
T Consensus 152 Gw~~~l~~L~~~le~~ 167 (178)
T 1xfs_A 152 GWGTTITQLEELLKQE 167 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7888999999999875
|
| >3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-05 Score=80.36 Aligned_cols=144 Identities=8% Similarity=0.095 Sum_probs=95.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEee-CCEEEEEEEeccce-eEEEEEEEEEEEEEe---eCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKVRILQEGCKGL-LYMVLHARVVMDICE---QHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~-~g~~rv~q~g~~gl-l~~~~~~rvvLdv~e---~~~r 418 (732)
..+.+...|++|++.||++|.|.+..++|.+++.++++++.- ++.+.+ +...... ....-..-+.++... ....
T Consensus 88 l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~ 166 (258)
T 3fo5_A 88 LSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIY-HVTSPALGGHTKPQDFVILASRRKPCDNGD 166 (258)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETTEEEE-EEEECCCTTCSSCEEEEEEEEEECCSSTTC
T ss_pred eEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCCeEEE-EEecCCccCCCCCCEEEEEEEEEeccCCCC
Confidence 567889999999999999999999999999999999999874 343333 3221110 000001112222221 1122
Q ss_pred --eEEEEEEec--------CCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHH-HHhhHHHHHHHHHHH
Q 004764 419 --EISFEQVEG--------DFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEV-IYEDLPSNLCAIRDY 485 (732)
Q Consensus 419 --rIsf~~veG--------dfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~-lr~~l~~~L~ALK~r 485 (732)
.|..+.+.. -.+ .+.+.|.++|.+++.|+|+|....+| +.+|.++.+.. +...+..++.+++++
T Consensus 167 ~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp---G~lP~~~~n~~g~s~~~~~t~~~~~~f 243 (258)
T 3fo5_A 167 PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP---GVLNYVTTNVAGLSSEFYTTFKACEQF 243 (258)
T ss_dssp CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG---GGHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC---CCCCceEEeccccchHHHHHHHHHHHH
Confidence 355565552 121 55699999999999999999988887 34777666652 345567788899999
Q ss_pred HHhhhC
Q 004764 486 VEKREG 491 (732)
Q Consensus 486 AE~~~~ 491 (732)
+++...
T Consensus 244 l~~~~~ 249 (258)
T 3fo5_A 244 LLDNRN 249 (258)
T ss_dssp HHHTC-
T ss_pred HHhccc
Confidence 887644
|
| >1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00013 Score=67.44 Aligned_cols=109 Identities=8% Similarity=0.225 Sum_probs=78.5
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.++.|++|++.||+++.++..+| |-+. |.. +++........+.|+
T Consensus 5 g~~~~e~~i~~~a~k~w~~~~~~~~~p-~g~~----------------------G~~--------~ie~iD~~~~~~~y~ 53 (122)
T 1vjh_A 5 GALSVKFDVKCPADKFFSAFVEDTNRP-FEKN----------------------GKT--------EIEAVDLVKKTMTIQ 53 (122)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHTTSC-SSTT----------------------CEE--------EEEEEETTTTEEEEE
T ss_pred cEEEEEEEecCCHHHHHHHHhhcccCC-ccCC----------------------Ccc--------EEEEEecccCEEEEE
Confidence 468899999999999999999998887 5332 110 223333566899999
Q ss_pred EEecCC----cceeEEEEEEEcC-CCeEEEEEEEEEEeccCccc-hHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 424 QVEGDF----DSFQGKWLFEQLG-SHHTLLKYSVESKMQKNSLL-SEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 424 ~veGdf----k~f~G~W~Lep~g-dG~TrVty~v~~ep~~d~~L-p~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.++|++ +.+.+.|.|.+.+ +|+|.+++.+.|+..++... |..+ ...+..+++++.++.-+
T Consensus 54 iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~yll~ 119 (122)
T 1vjh_A 54 MSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSI-----IDESVKYFKKLDEAILN 119 (122)
T ss_dssp EECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred EEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHH-----HHHHHHHHHHHHHHHhh
Confidence 999987 6999999999974 56799999999997653322 4333 23445566666666543
|
| >2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-05 Score=76.37 Aligned_cols=130 Identities=6% Similarity=0.079 Sum_probs=85.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEecc-------------ceeEEEEEEEEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCK-------------GLLYMVLHARVVMD 411 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~-------------gll~~~~~~rvvLd 411 (732)
.++.++.|+||+++||++|+|.+.+++|++.+ .+--+.|+..++...... |.. ..+..++ ++
T Consensus 20 ~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~~---~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~-~~~~g~v-~e 94 (191)
T 2k5g_A 20 SIRFERLLPGPIERVWAWLADADKRARWLAGG---ELPRQPGQTFELHFNHAALTAETAPARYAQYDRP-IVARHTL-LR 94 (191)
T ss_dssp SEEEEEEESSSSHHHHHHHHCHHHHTTTSCCC---CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSC-EEEEEEE-EE
T ss_pred eEEEEEEeCCCHHHHHHHHcCHHHHhhcCCCC---CCCccCCCEEEEEEcCCccccccCcccccccCCC-ceeEEEE-EE
Confidence 47788899999999999999999999999975 222234555555443221 011 2233332 12
Q ss_pred EEeeCCCeEEEEEEecCC-cceeEEEEEEEcCCCeEEEEEEEE-EEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 412 ICEQHEQEISFEQVEGDF-DSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 412 v~e~~~rrIsf~~veGdf-k~f~G~W~Lep~gdG~TrVty~v~-~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
+ .++++|+|+-..++. ......|+|++.++ +|+|++... +. + .. ....+.......|..|++++|..
T Consensus 95 ~--~pp~rl~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~~~~~~~~---~---~~--~~~~~~~GW~~~L~~L~~~le~~ 163 (191)
T 2k5g_A 95 C--EPPRVLALTWGGGAGEAPSEVLFELSEAGE-QVRLVLTHTRLA---D---RA--AMLDVAGGWHAHLAVLAGKLAGQ 163 (191)
T ss_dssp E--ETTTEEEEECCCCSSSSCCEEEEEEEECSS-SEEEEEEEECCC---S---HH--HHHHHTTTTTTHHHHHHHHHHTS
T ss_pred e--cCCCEEEEEeecCCCCCCEEEEEEEEEcCC-CEEEEEEEecCC---C---HH--HHHHHHHhHHHHHHHHHHHHCCC
Confidence 2 477899987544321 14577899999875 499998766 32 1 11 23456667788999999998865
Q ss_pred h
Q 004764 490 E 490 (732)
Q Consensus 490 ~ 490 (732)
.
T Consensus 164 ~ 164 (191)
T 2k5g_A 164 A 164 (191)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0001 Score=71.02 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=87.4
Q ss_pred cceeEEEEEEEecCHHHHHHHHhCcccccccccc--c--eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEee
Q 004764 92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPN--L--ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELI 167 (732)
Q Consensus 92 ~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~--v--~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~ 167 (732)
....++.++.|+||++.||+++||-+++++|++. . ..+ ..+.+.||+.+....+...-.++ .. -.+.+..
T Consensus 14 ~~~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~~~~-~~----g~v~e~~ 87 (175)
T 2lf2_A 14 ENKTITIKREFAAVRAIVWEAFTRAEILDQWWAPKPWKAKTK-SMDFKEGGTWLYAMVGPNGEEHW-SI----CEYAIIK 87 (175)
T ss_dssp TTTEEEEEEEESSCHHHHHHHHTCHHHHHHSSSSSSSEEEEE-EECCSTTCEEEEEEECSSSCEEE-EE----EEECCCC
T ss_pred CCceEEEEEEEcCCHHHHHHHhCCHHHHhhCcCCCCccceEE-EEeccCCCEEEEEEECCCCCEEE-eE----EEEEEEc
Confidence 3457999999999999999999999999999764 1 222 22444667655443321111111 11 1223332
Q ss_pred cCCCCceEEEEEEc----c----ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHH----HHHHhCHHHHHHH
Q 004764 168 HSASDRELYFSMVD----G----DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLE----RIIRSDLPVNLQA 235 (732)
Q Consensus 168 ~~~~~rrI~F~~ve----G----Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~----~~ir~~L~~~L~A 235 (732)
++++|.|+-.- | ++....-.|.|++. +++|+|++.-.. + +..... ..+.......|..
T Consensus 88 ---p~~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~--~~gT~l~~~~~~----~-~~~~~~~~~~~~~~~Gw~~~L~~ 157 (175)
T 2lf2_A 88 ---PIERFTGKDGFTDASGKLNTEMPRSNWDMRFIDK--GEITEVQYHISY----D-DVAQLEATIQMGFKEGITMAMEN 157 (175)
T ss_dssp ---SSSEEEEEEEEESSTTCCCTTSCCEEEEEEEEEE--TTEEEEEEEEEC----S-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEEEEecCCCCCcCCCCCcEEEEEEEEEC--CCCEEEEEEEec----C-CHHHHHHHHHHhHHHHHHHHHHH
Confidence 46888887652 2 12356788999996 468999998763 2 222222 2357788889999
Q ss_pred HHHHHHhh
Q 004764 236 LACRAERS 243 (732)
Q Consensus 236 Lk~raEr~ 243 (732)
|++.+|..
T Consensus 158 L~~~le~~ 165 (175)
T 2lf2_A 158 LDELLVSG 165 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998864
|
| >1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=73.31 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=81.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..++.++.|+||+++||++|+|.+.|++|++.+ .+-.+.|+..++.. ..|. +..++ +++ .++++|.|+
T Consensus 5 ~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~---~~~~~~Gg~~~~~~--~~g~----~~~~v-~e~--~p~~~l~~~ 72 (146)
T 1xn5_A 5 PDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEN---DLKAETGHHFHLQS--PFGP----SPCQV-TDV--ERPIKLSFT 72 (146)
T ss_dssp CCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCB---CCCSCTTCEEEEEC--SSCE----EEEEE-EEE--ETTTEEEEE
T ss_pred cEEEEEEEEcCCHHHHHHHHhChhHHHHhcCCC---CCCccCCCEEEEEe--cCCc----eEEEE-EEE--eCCcEEEEE
Confidence 458899999999999999999999999999864 11112344444322 1221 22221 112 477899987
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCc-----cchHHHHHHHHHhhHHHHH-HHHHHHHHhhh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-----LLSEAIMEEVIYEDLPSNL-CAIRDYVEKRE 490 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~-----~Lp~~lv~r~lr~~l~~~L-~ALK~rAE~~~ 490 (732)
.. + ......|+|++.++| |+|++....-+..+. ..............-...| ..|+++++...
T Consensus 73 ~~-~--~~~~~~~~l~~~~~g-T~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~~~~ 141 (146)
T 1xn5_A 73 WD-T--DGWSVTFHLKEEENG-TIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVELEH 141 (146)
T ss_dssp ET-T--TTEEEEEEEEECSSS-EEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC---
T ss_pred Ee-C--CCEEEEEEEEEcCCC-EEEEEEEEEecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 64 2 235788999998754 999987653221000 0011234455667788888 88988887653
|
| >2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=4.7e-05 Score=77.74 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=94.9
Q ss_pred EEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEEeeC-CEEEEEEEeccceeEEEEEEEEEEEEEee--CC--
Q 004764 344 RCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSREN-NKVRILQEGCKGLLYMVLHARVVMDICEQ--HE-- 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW-~vLtDyE~yPef~P~V~ssrVLer~~-g~~rv~q~g~~gll~~~~~~rvvLdv~e~--~~-- 417 (732)
+.+.+...|++++++|+ .++.| .++|.+.|.++++++.-+ +...+.+.. .......-+.-+.++.... .+
T Consensus 75 ~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~~~I~y~~~-~~p~p~~~RDfv~~r~~r~~~~~g~ 150 (237)
T 2pso_A 75 KLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQTEIYQYVL-NSMAPHPSRDFVVLRTWKTDLPKGM 150 (237)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTEEEEEEEE-CCSSSCCCEEEEEEEEEESCCGGGC
T ss_pred EEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhceEEEEEEcCCCcEEEEEEe-cCCCCcCCeEEEEEEEEEEECCCCE
Confidence 56889999999998875 68888 799999999999998843 332222221 1110011111111122111 11
Q ss_pred CeEEEEEEec-------CCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 418 QEISFEQVEG-------DFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 418 rrIsf~~veG-------dfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
--|..+.++. -.+ .+.|.|.++|.++++|.|+|...++|+ +++|.++ +.++...+...+..||+.+++
T Consensus 151 ~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~--G~iP~~l-n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 151 CTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK--GHSPEWY-SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp EEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECCS--SSCTTTT-TTHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC--CCchHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 2244444432 122 557999999998889999999999985 5799988 999999999999999999887
Q ss_pred hhCC
Q 004764 489 REGD 492 (732)
Q Consensus 489 ~~~~ 492 (732)
...+
T Consensus 228 ~~~~ 231 (237)
T 2pso_A 228 LIAE 231 (237)
T ss_dssp C---
T ss_pred hcCC
Confidence 6443
|
| >2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=69.78 Aligned_cols=138 Identities=9% Similarity=0.067 Sum_probs=85.5
Q ss_pred eeEEEEEEEecCHHHHHHHHhCcccccccccc--c--eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPN--L--ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~--v--~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..|+.++.|+||++.||+++||-+++++|++. . ..+ ..+.+.||+.+....+..+--++ . -.+.+..
T Consensus 8 ~~i~~~~~i~Ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~~~~--~----g~v~e~~-- 78 (164)
T 2l9p_A 8 NKIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVY-DFNATKGGSAFYAIQAPQMISYT--I----AEYLQVD-- 78 (164)
T ss_dssp SEEEECCEESSCHHHHHHHHHCHHHHTTTCCCTTCEEEEE-ECCCSTTEEEEEEEEETTEEEEE--E----EEESCCB--
T ss_pred ceEEEEEEeCCCHHHHHHHhCCHHHHHhccCCCCceeeEE-EEeccCCCEEEEEEECCCCCEEE--E----EEEEEEc--
Confidence 46899999999999999999999999999864 1 122 22334555554432221110001 1 1223332
Q ss_pred CCCceEEEEEEcc--------ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 170 ASDRELYFSMVDG--------DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 170 ~~~rrI~F~~veG--------Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++++|.|+-.-+ ++....-.|.|++. +++|+|++...+.+. ..-..++...+.......|..|++.++
T Consensus 79 -p~~rl~~t~~~~~~~g~p~~~~~~~~v~~~l~~~--~~gT~l~~~~~~~~~-~~~~~~~~~~~~~Gw~~~L~~L~~~le 154 (164)
T 2l9p_A 79 -APYYIEYLDYFATSKGEKDTSMPGMHITLNFEEV--KGKTTVTSTSTFPTE-SAAQQAIDMGVETGMNSTLNQLEKLLN 154 (164)
T ss_dssp -TTTEEEEEEEEEBTTBSCCSSSCCEEEEEEECCC--SSSEEEEEEEECSST-THHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEEEecCCCCCccCCCCceEEEEEEEEC--CCCEEEEEEEEcCCH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 478888876532 12346678888885 468999998764321 111122233467788889999999988
Q ss_pred hhc
Q 004764 242 RSF 244 (732)
Q Consensus 242 r~~ 244 (732)
+..
T Consensus 155 ~~~ 157 (164)
T 2l9p_A 155 QKL 157 (164)
T ss_dssp SSC
T ss_pred Hhh
Confidence 763
|
| >1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=97.92 E-value=7.9e-05 Score=69.50 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=82.0
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
..++.++.|+||++.||++|||.+++++|++... .+...|++.++.- .... ....+.+.. +++
T Consensus 5 ~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~~----~~~~~Gg~~~~~~-~~g~---------~~~~v~e~~---p~~ 67 (146)
T 1xn5_A 5 PDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEND----LKAETGHHFHLQS-PFGP---------SPCQVTDVE---RPI 67 (146)
T ss_dssp CCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCBC----CCSCTTCEEEEEC-SSCE---------EEEEEEEEE---TTT
T ss_pred cEEEEEEEEcCCHHHHHHHHhChhHHHHhcCCCC----CCccCCCEEEEEe-cCCc---------eEEEEEEEe---CCc
Confidence 4689999999999999999999999999998742 2333455543321 1111 122334443 368
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCC-------ccHHHHHHHHHhCHHHHH-HHHHHHHHh
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN-------FPAIFLERIIRSDLPVNL-QALACRAER 242 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p-------iP~~Lv~~~ir~~L~~~L-~ALk~raEr 242 (732)
+|.|+... ......|.|++. +++|+|+++...-+... ....-....+...-...| ..|++.++.
T Consensus 68 ~l~~~~~~---~~~~~~~~l~~~--~~gT~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~GW~~~l~~~L~~~l~~ 139 (146)
T 1xn5_A 68 KLSFTWDT---DGWSVTFHLKEE--ENGTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVEL 139 (146)
T ss_dssp EEEEEETT---TTEEEEEEEEEC--SSSEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC-
T ss_pred EEEEEEeC---CCEEEEEEEEEc--CCCEEEEEEEEEecCCCcccccccchhHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 89887753 234578999996 46799999877544331 112233445566777778 888877664
|
| >3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0005 Score=65.63 Aligned_cols=141 Identities=12% Similarity=0.017 Sum_probs=86.8
Q ss_pred CcceeEEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEe
Q 004764 91 WRERRIKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQEL 166 (732)
Q Consensus 91 ~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~ 166 (732)
.+...|..++.|+||++.||++|||-+++++|++.- ..+. .+.+.||+.+..-.+..+-. +.+. -.+.+.
T Consensus 10 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~-~d~~~Gg~~~~~~~~~~G~~-~~~~----g~v~e~ 83 (164)
T 3pu2_A 10 GSATRLEFRRHFAATPEQLWAALTSPALLPAWLFARGWPMTECV-FEPHKGGLIRQVWTGPEGRT-RGLT----GRVILA 83 (164)
T ss_dssp CBTTEEEEEEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEE-ECCSTTCEEEEEEECGGGCE-EEEE----EEEEEE
T ss_pred CCCceEEEEEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEE-EeccCCCEEEEEEECCCCCE-EEEE----EEEEEE
Confidence 445679999999999999999999999999999742 2222 23446676654422211100 1111 222333
Q ss_pred ecCCCCceEEEEEEc-cc-c-ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 167 IHSASDRELYFSMVD-GD-F-KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 167 ~~~~~~rrI~F~~ve-GD-f-k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
. ++++|.|+..- ++ . ....-.|.|++. +++|+|++.-.+ +........+...+...-...|..|++.++++
T Consensus 84 ~---p~~rl~~t~~~~~~~~~~~s~vt~~l~~~--~~gT~l~l~~~~-~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~~ 157 (164)
T 3pu2_A 84 E---PPHRLIHSELYDEDWTGGETLVTLQLLPV--EGGTELAMAVDY-ATPEARDAVAASAMATEMEEAYRHLDVMLAAL 157 (164)
T ss_dssp E---TTTEEEEEEBCC---CCSCEEEEEEEEEE--TTEEEEEEEEEC-SSTTHHHHHHTSTHHHHHHHHHHHHHHHHHHC
T ss_pred c---CCCEEEEEEeccCCCCCCCEEEEEEEEEc--CCCEEEEEEEEe-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3 36889888642 11 1 235678899986 468999998773 22111122222345677778888888887764
|
| >2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0008 Score=64.69 Aligned_cols=138 Identities=7% Similarity=0.060 Sum_probs=90.2
Q ss_pred ceeEEEEEEEecCHHHHHHHH-hCcccc-ccccccceEEEEEecCCC--CeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 93 ERRIKAEMLVNADVDSVWNAL-TDYERL-ADFVPNLACSGRIPCPYP--GRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VL-TDYErl-peFiP~v~~SeVLe~~~g--grirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
...++.++.+++||+++|.++ .|..++ |.++|.+.+|.-++. ++ |.+|.+..+...-... +..++....
T Consensus 3 v~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~veG-dg~~Gsir~~t~~~g~~~~~-----~kErle~iD- 75 (154)
T 2wql_A 3 AQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKG-DGGAGTVRIITLPEGSPITT-----MTVRTDAVN- 75 (154)
T ss_dssp CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEEES-SSSTTCEEEEECCTTCSCCE-----EEEEEEEEE-
T ss_pred CeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEEEEC-CCCCCeEEEEEEcCCCCceE-----EEEEEEEEe-
Confidence 345789999999999999765 899986 999998876655553 22 3555554432211111 111222222
Q ss_pred CCCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecC--CCccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 169 SASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 169 ~~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~--~piP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
...+.++|++++|| ++.+...-.+.|.+ ++++.+.+.....+. ...|.-.+.... .....+++++-+.+
T Consensus 76 -~~~~~~~y~iieGd~l~~~~~~~~~~ikv~p~~-~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~-~~~~~~~KaiEayL 151 (154)
T 2wql_A 76 -KEALSYDSTVIDGDILLGFIESIETHMVVVPTA-DGGSITKTTAIFHTKGDAVVPEENIKFAD-AQNTALFKAIEAYL 151 (154)
T ss_dssp -TTTTEEEEEEEESGGGTTTEEEEEEEEEEEECT-TSCEEEEEEEEEEESTTCCCCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred -hhhCEEEEEEEeccccccceEEEEEEEEEeeCC-CCcEEEEEEEEEEECCCCCCCHHHHHHHH-HHHHhHHHHHHHHH
Confidence 57899999999997 58899999999975 567888888887765 445665554432 22345566655544
|
| >2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00022 Score=70.07 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=87.0
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeee--------------eeEEEEEEEEE
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQ--------------RALYWHIEARV 159 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~--------------~il~~~~~arv 159 (732)
..|+.++.|+||++.||++|||-+++++|++.+. ++...|++.+..-.... .- ..+.
T Consensus 19 ~~i~~~~~i~Ap~e~Vw~altdpe~~~~W~~~~~----~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~--~~~~--- 89 (191)
T 2k5g_A 19 QSIRFERLLPGPIERVWAWLADADKRARWLAGGE----LPRQPGQTFELHFNHAALTAETAPARYAQYDRP--IVAR--- 89 (191)
T ss_dssp SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCCC----CCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSC--EEEE---
T ss_pred CeEEEEEEeCCCHHHHHHHHcCHHHHhhcCCCCC----CCccCCCEEEEEEcCCccccccCcccccccCCC--ceeE---
Confidence 4589999999999999999999999999999852 23345666544422110 00 1111
Q ss_pred EEEEEEeecCCCCceEEEEEEcccc-ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHH
Q 004764 160 VLDLQELIHSASDRELYFSMVDGDF-KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALAC 238 (732)
Q Consensus 160 vLdv~E~~~~~~~rrI~F~~veGDf-k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ 238 (732)
-.+.+.. .+++|.|+...++. ....-.|.|++. +++|+|+++-..-++ +. ....+...-...|..|++
T Consensus 90 -g~v~e~~---pp~rl~~~~~~~~~~~~~~v~~~l~~~--~~gT~l~~~~~~~~~---~~--~~~~~~~GW~~~L~~L~~ 158 (191)
T 2k5g_A 90 -HTLLRCE---PPRVLALTWGGGAGEAPSEVLFELSEA--GEQVRLVLTHTRLAD---RA--AMLDVAGGWHAHLAVLAG 158 (191)
T ss_dssp -EEEEEEE---TTTEEEEECCCCSSSSCCEEEEEEEEC--SSSEEEEEEEECCCS---HH--HHHHHTTTTTTHHHHHHH
T ss_pred -EEEEEec---CCCEEEEEeecCCCCCCEEEEEEEEEc--CCCEEEEEEEecCCC---HH--HHHHHHHhHHHHHHHHHH
Confidence 1233433 36889887654332 245678999985 467999988773222 11 234566777888999999
Q ss_pred HHHhhcc
Q 004764 239 RAERSFG 245 (732)
Q Consensus 239 raEr~~~ 245 (732)
.+|...+
T Consensus 159 ~le~~~~ 165 (191)
T 2k5g_A 159 KLAGQAP 165 (191)
T ss_dssp HHHTSCC
T ss_pred HHCCCCC
Confidence 9987643
|
| >2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.4e-05 Score=73.64 Aligned_cols=129 Identities=10% Similarity=0.079 Sum_probs=84.1
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
...++.++.|+||++.||++|||.+++++|++.+. .+...|++.++.- .... +. ..+.+.. ++
T Consensus 9 ~~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~~----~~~~~Gg~~~~~~-~~g~-----~~----~~v~e~~---p~ 71 (152)
T 2kew_A 9 LPDITKSITLEAPIQKVWETVSTSEGIAKWFMPND----FQLKEGQEFHLQS-PFGP-----SP----CKVLAVQ---AP 71 (152)
T ss_dssp SCCEEEEEEECSCHHHHHHHSSSSHHHHHHHCSCC----CCSCSSCCBCSSS-SCCS-----CC----BEEEEEE---TT
T ss_pred ccEEEEEEEECCCHHHHHHHHhCHHHHHHhcCCCC----CCCCCCCEEEEEe-cCCc-----eE----EEEEEEe---CC
Confidence 34699999999999999999999999999998832 2223444432111 1111 11 1223333 36
Q ss_pred ceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCC--Ccc-----HHHHHHHHHhCHHHHH-HHHHHHHHhh
Q 004764 173 RELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFP-----AIFLERIIRSDLPVNL-QALACRAERS 243 (732)
Q Consensus 173 rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~--piP-----~~Lv~~~ir~~L~~~L-~ALk~raEr~ 243 (732)
++|.|+...+ .....|.|++.+ ++|+|+++...-+.. ..| ..-........-...| ..|++.+|..
T Consensus 72 ~~l~~~~~~~---~~~~~~~l~~~~--~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~g 145 (152)
T 2kew_A 72 TELSFEWDTE---GWVVTFQLEDLG--EKTGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEEL 145 (152)
T ss_dssp TEEEEECTTS---CCEEEEEEECCS--SCEEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTCS
T ss_pred cEEEEEEccC---CEEEEEEEEECC--CCEEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 8898876544 456789999854 579999987654443 223 1222345677788889 9999988753
|
| >3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0007 Score=64.33 Aligned_cols=136 Identities=11% Similarity=0.013 Sum_probs=86.7
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccc-----eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNL-----ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v-----~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
..++.+..|+||++.||++|||-+++++|.+.. ..++ ++.+.||+.+..-.+..+- .+.+. -.+.+..
T Consensus 9 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~g~~~~~~~-~d~~~Gg~~~~~~~~~~G~-~~~~~----g~v~e~~- 81 (162)
T 3q64_A 9 STFIIERLYPAPPSKVFFALGNADAKRRWFTDPDNPMPGRFE-MDFRVGGKEVNAGGPKDGP-IHVYT----ATYQDIV- 81 (162)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCHHHHHHHSSCTTSCCGGGCE-ECCSTTCEEEEEECCTTSC-CEEEE----EEEEEEE-
T ss_pred ceEEEEEEeCCCHHHHHHHHCCHHHHhhcCCCCCCccceEEE-ECCccCCEEEEEEECCCCC-EEEEE----EEEEEEc-
Confidence 458889999999999999999999999999653 1122 2444566654432211110 01111 2223333
Q ss_pred CCCCceEEEEEE---ccc-cceeeEEEEEEecCCCCeeEEEEEEEEe-cCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 169 SASDRELYFSMV---DGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVI-PRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 169 ~~~~rrI~F~~v---eGD-fk~f~GsW~Lepl~~g~gT~LtY~l~V~-P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++++|.|+.. +|. .....-.|.|++. +++|+|++.-... ++..- . .......-...|..|++.++..
T Consensus 82 --p~~rl~~~~~~~~~~~~~~~s~v~~~l~~~--~~gT~lt~~~~~~~~~~~~-~---~~~~~~GW~~~L~~L~~~le~~ 153 (162)
T 3q64_A 82 --PDQRIVYSYDMLFGETRISVSLATIQLFAE--GEGTRLVLTEQGAFLDGHD-T---PSTREHGTGVLLDLLDAFLDKT 153 (162)
T ss_dssp --TTTEEEEEEEEEETTEEEEEEEEEEEEEEE--TTEEEEEEEEEEEEETTSS-C---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEEEEecCCCCCCCceEEEEEEEEc--CCCEEEEEEEEecCccchh-H---HHHHHHHHHHHHHHHHHHHhhc
Confidence 3688888775 232 3445678899986 4689999988753 23111 1 1456677888899999999876
Q ss_pred c
Q 004764 244 F 244 (732)
Q Consensus 244 ~ 244 (732)
.
T Consensus 154 ~ 154 (162)
T 3q64_A 154 T 154 (162)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00051 Score=64.59 Aligned_cols=130 Identities=11% Similarity=0.095 Sum_probs=82.3
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
...|+.++.|+||++.||++|||-+++++|++.. .. +...|++.++. +.... .+. -.+.+.. ++
T Consensus 8 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~-~~~~Gg~~~~~--~~~g~---~~~----g~v~e~~---p~ 71 (151)
T 3q63_A 8 NRTVVVERQISHPPEKLWRALTQPHLIEEWLMKN---DF-KPAVGHRFNIS--ADWGG---VLD----CEVLAVE---PN 71 (151)
T ss_dssp -CEEEEEEEESSCHHHHHHHHHCHHHHHHHSCEE---CC-CSSTTCEEEEE--CTTSC---EEE----EEEEEEE---TT
T ss_pred CCeEEEEEEeCCCHHHHHHHHcCHHHHHhhcCcC---CC-ccCCCCEEEEE--CCCCC---EEE----EEEEEEe---CC
Confidence 4579999999999999999999999999999952 22 33456665443 21111 111 2223333 36
Q ss_pred ceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 173 RELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 173 rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++|.|+...++ -....-.|.|++. +++|+|+++-.--+.-. .. ....+...-...|..|++.+|..
T Consensus 72 ~~l~~~~~~~~~~~~~~~~s~v~~~l~~~--~~gT~l~l~~~g~~~~~--~~-~~~~~~~GW~~~L~~L~~~le~~ 142 (151)
T 3q63_A 72 KTLSYTWNLAHQDPAFDLRSVVTFTLTPT--PTGTHLRMEQSGFRPDQ--RR-AYGGAKMGWPQFFEKLEQLLDRT 142 (151)
T ss_dssp TEEEEECBBCCSSTTTCBCCEEEEEEEEC--SSSEEEEEEEECCCTTC--HH-HHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEEEecCCCCCCCCCCeEEEEEEEEc--CCCEEEEEEEeCCCcch--HH-HHHhhhhCHHHHHHHHHHHHhcc
Confidence 88998876431 1234567889985 46799999877433211 11 12345667777899999988864
|
| >3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00067 Score=64.39 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=82.8
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccc-----eEEEEEecCCCCeeEEEEEee-eeeEEEEEEEEEEEEEEEee
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNL-----ACSGRIPCPYPGRIWLEQRGL-QRALYWHIEARVVLDLQELI 167 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v-----~~SeVLe~~~ggrirv~Qvg~-~~il~~~~~arvvLdv~E~~ 167 (732)
..+..+..|+||++.||++|||-+++++|++.. ..+ .++.+.||+.+..-.+. ..... +. -.+.+..
T Consensus 8 ~~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~~~~--~~----g~v~e~~ 80 (161)
T 3rd6_A 8 STFTIERTYPQSPDRVFHAFADKATVRRWRVDGDGFTVAEF-SFDFRVGGGEVSRFSYGGGPEVR--LD----AQFQDIV 80 (161)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCHHHHHHHTCCCCC---CEE-EECCSTTCEEEEEECSTTSCCEE--EE----EEEEEEE
T ss_pred ceEEEEEEECCCHHHHHHHhcCHHHHhhccCCCCCceeeEE-EEccCcCCEEEEEEECCCCCEEE--EE----EEEEEEc
Confidence 458888999999999999999999999999543 112 23444666654432211 11111 11 1223333
Q ss_pred cCCCCceEEEEEE---ccc-cceeeEEEEEEecCCCCeeEEEEEEEEe-cCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 168 HSASDRELYFSMV---DGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVI-PRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 168 ~~~~~rrI~F~~v---eGD-fk~f~GsW~Lepl~~g~gT~LtY~l~V~-P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+.. +|. .....-.|.|++. +++|+|+++.... ++..- . .......-...|..|++.++.
T Consensus 81 ---p~~rl~~~~~~~~~~~~~~~s~v~~~l~~~--~~gT~lt~~~~~~~~~~~~-~---~~~~~~GW~~~L~~L~~~le~ 151 (161)
T 3rd6_A 81 ---PDQRIVFSYRMAIGPQPMSASLTTVELTPS--GDGTRLTYTEQGAFFDGVD-S---AKGREEGTRGLLEALAAELQK 151 (161)
T ss_dssp ---TTTEEEEEEEEEETTEEEEEEEEEEEEEEE--TTEEEEEEEEEEEEETTCC-C---HHHHHHHHHHHHHHHHHHC--
T ss_pred ---CCCEEEEEEEecCCCCCCCceEEEEEEEEC--CCCEEEEEEEEecCcchhh-h---HHHHHHHHHHHHHHHHHHHhh
Confidence 3688888765 231 3445678889985 4689999988753 23111 1 135567778889999987776
Q ss_pred h
Q 004764 243 S 243 (732)
Q Consensus 243 ~ 243 (732)
.
T Consensus 152 ~ 152 (161)
T 3rd6_A 152 W 152 (161)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-05 Score=74.71 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=81.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..++.|+||+++||++|+|.++|++|++.+ .+--+.|+..++.. . .|. +..++ +++ .++++|.|+
T Consensus 10 ~~i~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~---~~~~~~Gg~~~~~~-~-~g~----~~~~v-~e~--~p~~~l~~~ 77 (152)
T 2kew_A 10 PDITKSITLEAPIQKVWETVSTSEGIAKWFMPN---DFQLKEGQEFHLQS-P-FGP----SPCKV-LAV--QAPTELSFE 77 (152)
T ss_dssp CCEEEEEEECSCHHHHHHHSSSSHHHHHHHCSC---CCCSCSSCCBCSSS-S-CCS----CCBEE-EEE--ETTTEEEEE
T ss_pred cEEEEEEEECCCHHHHHHHHhCHHHHHHhcCCC---CCCCCCCCEEEEEe-c-CCc----eEEEE-EEE--eCCcEEEEE
Confidence 458899999999999999999999999998873 11112333322211 1 121 12221 112 477899987
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccch-----HHHHHHHHHhhHHHHH-HHHHHHHHhh
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS-----EAIMEEVIYEDLPSNL-CAIRDYVEKR 489 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp-----~~lv~r~lr~~l~~~L-~ALK~rAE~~ 489 (732)
...+ .....|+|++.++| |+|++....-+......+ ..-........-...| ..|++++|..
T Consensus 78 ~~~~---~~~~~~~l~~~~~g-T~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~L~~~le~g 145 (152)
T 2kew_A 78 WDTE---GWVVTFQLEDLGEK-TGFTLIHSGWKEPNQVIGKANEKSSVVRGKMDGGWTGIVNERLRKAVEEL 145 (152)
T ss_dssp CTTS---CCEEEEEEECCSSC-EEEEEEECCSSCCSBCSSSSSSBHHHHHHHHHHHHHHHTTTHHHHHHTCS
T ss_pred EccC---CEEEEEEEEECCCC-EEEEEEEEeccCcccccccccchhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 5333 45778999998765 999987542111000011 1223346777889999 9999998864
|
| >3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0014 Score=62.77 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=85.5
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccc-----eEEEEEecCCCCeeEEEEEee-eeeEEEEEEEEEEEEEEEee
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNL-----ACSGRIPCPYPGRIWLEQRGL-QRALYWHIEARVVLDLQELI 167 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v-----~~SeVLe~~~ggrirv~Qvg~-~~il~~~~~arvvLdv~E~~ 167 (732)
..++.+..|+||++.||+++||-+++++|++.- ..++ ++.+.||+.+..-.+. ..... +. -.+.+..
T Consensus 9 ~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~~~~~~~~~~~~-~d~~~GG~~~~~~~~~~G~~~~--~~----g~v~ev~ 81 (166)
T 3put_A 9 TTFVIERRLTAPVARVFRAWSTPESKRQWFACHGEWVPLEYA-LDFRPGGTERNYTADTDGLLHA--YD----ARYIDIV 81 (166)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCHHHHHHHHTCC---CCSEEE-ECCSTTCEEEEEEECTTSCEEE--EE----EEEEEEE
T ss_pred ceEEEEEEECCCHHHHHHHhCCHHHHHhcCCCCCCceeeEEE-eCcccCCEEEEEEECCCCCEEE--EE----EEEEEEc
Confidence 468999999999999999999999999998532 2222 3445677765432221 11111 11 1223333
Q ss_pred cCCCCceEEEEEE---cc-ccceeeEEEEEEecCCCCeeEEEEEEEEe-cCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 168 HSASDRELYFSMV---DG-DFKKFEGKWSIKSGTRSSTTTLSYEVNVI-PRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 168 ~~~~~rrI~F~~v---eG-Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~-P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+-. +| +.....-.|.|++. +++|+|+++-... ++..-. .......-...|..|++.+|.
T Consensus 82 ---p~~rlv~t~~~~~~~~~~~~s~vt~~l~~~--~~gT~ltl~~~~~~~~~~~~----~~~~~~GW~~~L~~L~~~le~ 152 (166)
T 3put_A 82 ---PDTRIIYAYEMKLGQTRISASLVTVAFDVE--PSGTRMVFTEQVVFLDGYGD----NGARLQGTEIGLDNLELFLVR 152 (166)
T ss_dssp ---TTTEEEEEEEEEETTEEEEEEEEEEEEEEC--SSSEEEEEEEEEEEETTCCC----TTHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcEEEEEEEecCCCCCCCceEEEEEEEEC--CCCEEEEEEEEecCccchhh----HHHHHHHHHHHHHHHHHHHhc
Confidence 3688888765 23 23445678899985 4789999887654 331111 134566777889999998887
Q ss_pred h
Q 004764 243 S 243 (732)
Q Consensus 243 ~ 243 (732)
.
T Consensus 153 ~ 153 (166)
T 3put_A 153 E 153 (166)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0011 Score=63.84 Aligned_cols=134 Identities=9% Similarity=0.023 Sum_probs=83.5
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccc----eEEEEEecCCCCeeEEEEEeeee-eEEEEEEEEEEEEEEEee
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNL----ACSGRIPCPYPGRIWLEQRGLQR-ALYWHIEARVVLDLQELI 167 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v----~~SeVLe~~~ggrirv~Qvg~~~-il~~~~~arvvLdv~E~~ 167 (732)
...+..+..|+||++.||+++||-+++.+|+..- ..+ .++.+.||+.+..-.+..+ .+.+ . -.+.+..
T Consensus 12 ~~~i~~~r~i~Ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~-~~d~r~GG~~~~~~~~~~G~~~~~--~----g~~~ev~ 84 (168)
T 3uid_A 12 TLTLTITAEFAAPVTRIWQIYADPRQLEKVWGPPSHPATVV-DHDLRPGGRVTYFMTGPDGEKYAG--Y----WEITAVD 84 (168)
T ss_dssp TTEEEEEEEESSCHHHHHHHHHSHHHHHHHHCCTTSCCEEE-EECCSTTCEEEEEEECTTSCEEEE--E----EEEEEEE
T ss_pred CCEEEEEEEEcCCHHHHHHHhCCHHHHhhEeCCCCeeeeEE-EEcccCCcEEEEEEECCCCCEEee--E----EEEEEEe
Confidence 4469999999999999999999999999997542 222 2344567776544332111 1111 1 1223333
Q ss_pred cCCCCceEEEEEEc----cc----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHH---HHHHHHHhCHHHHHHHH
Q 004764 168 HSASDRELYFSMVD----GD----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAI---FLERIIRSDLPVNLQAL 236 (732)
Q Consensus 168 ~~~~~rrI~F~~ve----GD----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~---Lv~~~ir~~L~~~L~AL 236 (732)
++++|.|+..- |. .....-.|.|++. +++|+|++... +.-+.. ++...+...-...|..|
T Consensus 85 ---p~~rlv~t~~~~~~~g~p~~~~~~s~vt~~l~~~--~~gT~lt~~~~----~~~~~~~~~~~~~g~~~GW~~~L~~L 155 (168)
T 3uid_A 85 ---EPHSFSFLDGFADEDFNPNTDLPVSTNVYTFTEH--DGGTRATYVGT----YASAEALQQVLDMGVIEGASSAINQI 155 (168)
T ss_dssp ---TTTEEEEEEEEECTTSCBCSSCCCEEEEEEEEEE--TTEEEEEEEEE----CSCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ---CCcEEEEEEeeccCCCCcCCCCCcEEEEEEEEEC--CCCEEEEEEEe----cCCHHHHHHHHHhcHHHHHHHHHHHH
Confidence 36888887642 31 1246788999996 47899999843 222221 12223567777888888
Q ss_pred HHHHHh
Q 004764 237 ACRAER 242 (732)
Q Consensus 237 k~raEr 242 (732)
++.++.
T Consensus 156 ~~~l~~ 161 (168)
T 3uid_A 156 DALLTA 161 (168)
T ss_dssp HHHTCS
T ss_pred HHHHHh
Confidence 886654
|
| >4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00033 Score=68.79 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=82.3
Q ss_pred ceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 341 GVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 341 g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
+..+.+..++.|+||+++||++|+|.+.++.|++.. .+--+.|+..++. .. ...+ ++++ .++++|
T Consensus 18 ~~~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~---~~d~~~Gg~~~~~--~~-------~~g~-v~e~--~pp~rl 82 (181)
T 4fpw_A 18 GEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP---KGDLREGGNFALQ--GN-------ASGD-ILRC--EPPRRL 82 (181)
T ss_dssp EEEEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE---ESCCSTTCEEEES--SS-------CEEE-CCEE--ETTTEE
T ss_pred CCCceEEEEEEECCCHHHHHHHHcChHHHhhccCCC---ccCCCCCCEEEEE--ec-------CCEE-EEEE--cCCcEE
Confidence 345789999999999999999999999999998753 2112234443321 11 0111 1122 477999
Q ss_pred EEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 421 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 421 sf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.|....++.......|+|++.+ ++|+|++....-+ .. . ...+...-...|..|+++++..
T Consensus 83 ~~tw~~~~~~~s~vt~~l~~~~-~gT~Ltl~~~~~~------~e-~-~~~~~~GW~~~L~~L~~~L~G~ 142 (181)
T 4fpw_A 83 TISWVYEGKPDSEVELRLSEEG-DGTLLELEHATTS------EQ-M-LVEVGVGWEMALDFLGMFIRGD 142 (181)
T ss_dssp EEEEBCTTSCCEEEEEEEEEET-TEEEEEEEEEESC------HH-H-HHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEEcCCCCcEEEEEEEEECC-CcEEEEEEEEcCC------HH-H-HHHHHHhHHHHHHHHHHHhCCC
Confidence 9987654433456889999975 6799999865421 12 2 2456677788999999988644
|
| >1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0019 Score=59.51 Aligned_cols=107 Identities=10% Similarity=0.175 Sum_probs=74.8
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
..+..++.|++|+++||+++.|...+| |-+. |.. .+.... ...+
T Consensus 5 g~~~~e~~i~~~a~k~w~~~~~~~~~p-~g~~--------------------G~~-------------~ie~iD--~~~~ 48 (122)
T 1vjh_A 5 GALSVKFDVKCPADKFFSAFVEDTNRP-FEKN--------------------GKT-------------EIEAVD--LVKK 48 (122)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHTTSC-SSTT--------------------CEE-------------EEEEEE--TTTT
T ss_pred cEEEEEEEecCCHHHHHHHHhhcccCC-ccCC--------------------Ccc-------------EEEEEe--cccC
Confidence 368899999999999999999986666 3221 211 112222 4789
Q ss_pred eEEEEEEcccc----ceeeEEEEEEecCCCCeeEEEEEEEEecCC---CccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 174 ELYFSMVDGDF----KKFEGKWSIKSGTRSSTTTLSYEVNVIPRL---NFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 174 rI~F~~veGDf----k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~---piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.++|++++||+ +.|.+.|++.+.+.++||.+.+++...... +-|..+. .-+..+++++-+...
T Consensus 49 ~~~y~iieGd~~~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~~-----~~~~~~~k~ie~yll 118 (122)
T 1vjh_A 49 TMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSII-----DESVKYFKKLDEAIL 118 (122)
T ss_dssp EEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHH-----HHHHHHHHHHHHHHH
T ss_pred EEEEEEEEccccccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHHH-----HHHHHHHHHHHHHHh
Confidence 99999999986 899999999996325689999999987643 3344442 233445666555444
|
| >3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.001 Score=62.26 Aligned_cols=132 Identities=8% Similarity=0.022 Sum_probs=78.5
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccc--e----EEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNL--A----CSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v--~----~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
.++.++.|+||++.||++|||-+++++|++.- . .+ .++.+.||+.+..-.+..+- .+.+ .-.+.+..
T Consensus 3 ~i~~~r~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~-~~d~~~Gg~~~~~~~~~~G~-~~~~----~g~v~e~~- 75 (152)
T 3eli_A 3 DLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQH-DLDFTRLGPWFSVMVNGEGQ-RYKV----SGQVTHVK- 75 (152)
T ss_dssp EEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSB-CCCCSSSEEEEEEEECTTCC-EEEE----EEEEEEEE-
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHHhhccCCCCccccccee-EEcccCCcEEEEEEECCCCC-EEEE----EEEEEEEc-
Confidence 57889999999999999999999999998741 0 11 12323455554332221110 0111 12233333
Q ss_pred CCCCceEEEEEEcccc-----ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 169 SASDRELYFSMVDGDF-----KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 169 ~~~~rrI~F~~veGDf-----k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+....+. ....-.|.|++. +++|+|+++-.- ++-+. ........-...|..|++.+|-
T Consensus 76 --p~~~l~~~~~~~~~~~~~~~~~~v~~~l~~~--~~gT~l~l~~~~---~~~~~--~~~~~~~GW~~~L~~L~~~l~~ 145 (152)
T 3eli_A 76 --PPQSVGFTWGWHDDDDRRGAESHVMFIVEPC--AKGARLILDHRE---LGDDE--MSLRHEEGWTSSLRKLAAELAL 145 (152)
T ss_dssp --TTTEEEEEEEEECTTSCEEEEEEEEEECCBC----CEEEEEEEES---CSCHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred --CCCEEEEEEeecCCCCCCCCcEEEEEEEEEC--CCCEEEEEEEcc---CCCHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 36888888753221 345567778875 467999876542 22222 2345667777888888887763
|
| >1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00017 Score=67.13 Aligned_cols=124 Identities=14% Similarity=0.075 Sum_probs=80.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..++.|+||+++||++|+|.+.+++|++.....+ -+.++..++. .|. +..++ +++ .++++|.|.
T Consensus 11 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~~d--~~~Gg~~~~~----~G~----~~g~v-~e~--~p~~~l~~~ 77 (145)
T 1x53_A 11 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPATLE--ADRGGKFHMV----DGN----VSGEF-TDL--VPEKHIVMK 77 (145)
T ss_dssp EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBCC--CSTTCCCBBT----TTT----EECCE-EEE--ETTTEEEEE
T ss_pred cEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCceEE--CCCCCEEEEE----CCe----eEEEE-EEE--eCCCEEEEE
Confidence 5688899999999999999999999999986543221 2344443322 232 12221 122 477899987
Q ss_pred EEecCC--c-ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHHhh
Q 004764 424 QVEGDF--D-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVEKR 489 (732)
Q Consensus 424 ~veGdf--k-~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~-~L~ALK~rAE~~ 489 (732)
-...+. . ...-.|+|++.+ ++|+|++....-+. .. ...+...... +|..|++++|..
T Consensus 78 ~~~~~~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~------~~--~~~~~~Gw~~~~l~~L~~~le~g 138 (145)
T 1x53_A 78 WRFKSWPEGHFATITLTFIDKN-GETELCMEGRGIPA------PE--EERTRQGWQRYYFEGIKQTFGYG 138 (145)
T ss_dssp EEETTSCTTCCEEEEEECCBCS-SCEEEEEEEEEEEH------HH--HHHHHHTTHHHHHHHHHHHTCCC
T ss_pred EecCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCH------HH--HHHHHhchhHHHHHHHHHHHhcC
Confidence 544322 1 356788888865 56999988543221 11 3556667777 799999987753
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00027 Score=79.31 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=81.5
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC---EEEEEEEeccceeEEEEEEEEEEEEEe-eCCCeEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICE-QHEQEIS 421 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g---~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~rrIs 421 (732)
++.+..|+||+++||+..+|.++++.|+|....++++...++ +..++ . ..+ .+.|++++ +.++ .++++++
T Consensus 3 ~~~~~~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~~-~-~~~--~~~w~~~~--~~t~~~~~~~F~ 76 (516)
T 3oh8_A 3 LTTSHFIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTIF-S-LPA--GLKWVARH--DLSGFLNGSRFT 76 (516)
T ss_dssp EEEEEEESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEEE-E-CST--TCEEEEEE--CGGGCBTTTEEE
T ss_pred EEEEEEccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEEE-e-cCC--CcEEEEEE--ccccccCCCeEE
Confidence 678889999999999999999999999999999999855432 22232 2 222 25677763 1143 4668999
Q ss_pred EEEEecC---CcceeEEEEEEEcCCCeEEEEEEEEEEe
Q 004764 422 FEQVEGD---FDSFQGKWLFEQLGSHHTLLKYSVESKM 456 (732)
Q Consensus 422 f~~veGd---fk~f~G~W~Lep~gdG~TrVty~v~~ep 456 (732)
.+++.|+ |..++-++.|++.++ +|+++..+++.+
T Consensus 77 d~~~~gp~~~~~~w~h~h~f~~~~~-gt~~~d~~~~~~ 113 (516)
T 3oh8_A 77 DVCLTAPVKALANWRHVHNFVDQDG-GTLITDSVSTRL 113 (516)
T ss_dssp EECCSCSSGGGSSCEEEEEEEEETT-EEEEEEEEECSS
T ss_pred EEeccCcccceeeeEEEEEEEEcCC-CcEEEEEEEeeC
Confidence 9999999 888899999999875 599999999874
|
| >4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0008 Score=66.06 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=82.9
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
.+.++.++.|+||++.||++|||-+++++|++.. ..+.+.||+++.. +.. . -.+.+.. ++
T Consensus 20 ~~~i~~~r~i~Appe~Vw~alTdpe~l~~W~~p~----~~d~~~Gg~~~~~--~~~-------~----g~v~e~~---pp 79 (181)
T 4fpw_A 20 ARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP----KGDLREGGNFALQ--GNA-------S----GDILRCE---PP 79 (181)
T ss_dssp EEEEEEEEEESSCHHHHHHHHHCHHHHHHHSCCE----ESCCSTTCEEEES--SSC-------E----EECCEEE---TT
T ss_pred CceEEEEEEECCCHHHHHHHHcChHHHhhccCCC----ccCCCCCCEEEEE--ecC-------C----EEEEEEc---CC
Confidence 4579999999999999999999999999998764 2333455664322 110 1 1222332 46
Q ss_pred ceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 173 RELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 173 rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
++|.|+...++-....-.|.|++. +++|+|+++-...++ .. ...+...-...|..|++.++..
T Consensus 80 ~rl~~tw~~~~~~~s~vt~~l~~~--~~gT~Ltl~~~~~~~----e~--~~~~~~GW~~~L~~L~~~L~G~ 142 (181)
T 4fpw_A 80 RRLTISWVYEGKPDSEVELRLSEE--GDGTLLELEHATTSE----QM--LVEVGVGWEMALDFLGMFIRGD 142 (181)
T ss_dssp TEEEEEEBCTTSCCEEEEEEEEEE--TTEEEEEEEEEESCH----HH--HHHHHHHHHHHHHHHHHHC---
T ss_pred cEEEEEEEcCCCCcEEEEEEEEEC--CCcEEEEEEEEcCCH----HH--HHHHHHhHHHHHHHHHHHhCCC
Confidence 899998765543445678999995 579999998776432 22 2356667778888888877643
|
| >1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0014 Score=61.92 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=84.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCc-CC------cEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCC
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVP-NL------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 417 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P-~V------~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~ 417 (732)
.|..++.|+||++.||++++| .+..|++ .. ..+++- +.+|.. . ....+|..+. + .+ ++++ .++
T Consensus 5 ~i~~~r~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~~~d-r~GG~~-~-~~~~~G~~~~-~-g~-v~ev--~pp 74 (155)
T 1zxf_A 5 FVRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVD-KKGGRW-Y-EIDEQGEEHT-F-GL-IRKV--DEP 74 (155)
T ss_dssp CEEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEE-TTTTEE-E-CCCTTTSCCC-C-EE-EEEE--ETT
T ss_pred eEEEEEEEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceEEEE-CCCCEE-E-EECCCCCeEe-E-EE-EEEE--CCC
Confidence 477888999999999999999 4788873 21 234554 566654 2 2233342211 1 12 1222 478
Q ss_pred CeEEEEEE-ecCC-----cceeEEEEEEEcCCCeEEEEEEEEEEeccCccc-hHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 418 QEISFEQV-EGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLL-SEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 418 rrIsf~~v-eGdf-----k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~L-p~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
++|+|.-. .++. ....-+|+|++.++|+|+|+.....-.. ... ....+...+...-...|..|++++++..
T Consensus 75 ~rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~~--~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~~~ 152 (155)
T 1zxf_A 75 DTLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDR--MGTKHAKRVRNGMDKGWPTILQSFQDKIDEEG 152 (155)
T ss_dssp TEEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTT--SCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEecccc--cccchhHHHHHHHHhhHHHHHHHHHHHHhhhh
Confidence 99999832 2211 2356789999988777998887542110 001 2234555666788999999999988765
Q ss_pred CC
Q 004764 491 GD 492 (732)
Q Consensus 491 ~~ 492 (732)
+.
T Consensus 153 a~ 154 (155)
T 1zxf_A 153 AK 154 (155)
T ss_dssp TT
T ss_pred cc
Confidence 53
|
| >1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00043 Score=64.32 Aligned_cols=124 Identities=12% Similarity=0.144 Sum_probs=81.3
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
..+..++.|+||++.||++|||-+++++|++..... +.+.||+.++. .|. +.. .+.+.. +++
T Consensus 11 ~~i~~~~~i~ap~e~Vw~altdp~~~~~W~~~~~~~---d~~~Gg~~~~~-~G~-------~~g----~v~e~~---p~~ 72 (145)
T 1x53_A 11 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPATL---EADRGGKFHMV-DGN-------VSG----EFTDLV---PEK 72 (145)
T ss_dssp EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBC---CCSTTCCCBBT-TTT-------EEC----CEEEEE---TTT
T ss_pred cEEEEEEEECCCHHHHHHHhCCHHHHHHhcCCCceE---ECCCCCEEEEE-CCe-------eEE----EEEEEe---CCC
Confidence 568999999999999999999999999998665432 33456654332 221 111 122332 368
Q ss_pred eEEEEEEcccc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHH-HHHHHHHHHHhh
Q 004764 174 ELYFSMVDGDF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPV-NLQALACRAERS 243 (732)
Q Consensus 174 rI~F~~veGDf---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~-~L~ALk~raEr~ 243 (732)
+|.|+-.-.+. ....-.|.|++. +++|+|++.....|. .. ...+...... .|..|++.+|..
T Consensus 73 ~l~~~~~~~~~~~~~~~~v~~~l~~~--~~gT~l~~~~~~~~~----~~--~~~~~~Gw~~~~l~~L~~~le~g 138 (145)
T 1x53_A 73 HIVMKWRFKSWPEGHFATITLTFIDK--NGETELCMEGRGIPA----PE--EERTRQGWQRYYFEGIKQTFGYG 138 (145)
T ss_dssp EEEEEEEETTSCTTCCEEEEEECCBC--SSCEEEEEEEEEEEH----HH--HHHHHHTTHHHHHHHHHHHTCCC
T ss_pred EEEEEEecCCCCCCCcEEEEEEEEEC--CCCEEEEEEEECCCH----HH--HHHHHhchhHHHHHHHHHHHhcC
Confidence 88877653322 234567888884 478999998543332 11 3556777777 799999977753
|
| >2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0087 Score=59.35 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=84.9
Q ss_pred CceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 340 GGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 340 ~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
.+..+.+.-+.+++||+++||+.|+|-+.+..|+..+ .+--+.++..++. .. ...+ ++++ .++++
T Consensus 28 ~~~~~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~~---~~d~r~GG~~~~~----~~-----~~g~-v~ev--~pp~r 92 (192)
T 2luz_A 28 AGEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEP---KGDLREGGNFALQ----GN-----ASGD-ILRC--EPPRR 92 (192)
T ss_dssp TEEEEEEEEEEEESSCHHHHHHHHHCHHHHTTTSCCE---EECCSTTSEEEET----TS-----EEEE-EEEE--ETTTE
T ss_pred CCCceEEEEEEEeCCCHHHHHHHHcCHHHHheeeCCC---cccCccCcEEEee----cc-----ccce-EEEE--ecCee
Confidence 3445788899999999999999999999999999753 3333445544331 11 1122 1222 47889
Q ss_pred EEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 420 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 420 Isf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
|.|.-...+-....-.|+|++.++ +|+|++.....+ +... ..+...-...|..|+.+++....
T Consensus 93 L~~tw~~~~~~~~~vt~~L~~~g~-gT~Ltl~h~~~~-------~~~~-~~~~~GW~~~Ld~L~~~L~g~~p 155 (192)
T 2luz_A 93 LTISWVYEGKPDSEVELRLSEEGD-GTLLELEHATTS-------EQML-VEVGVGWEMALDFLGMFIRGDLP 155 (192)
T ss_dssp EEEEEEESSSCEEEEEEEEEEETT-EEEEEEEEEESC-------HHHH-HHHHHHHHHHHHHHHHHHTTCCS
T ss_pred EEEEEeecCCCCceEEEEEEEcCC-cEEEEEEEECCC-------HHHH-HHHhccHHHHHHHHHHHhCCCCC
Confidence 998865433334567899999875 599998765422 2222 23445678889999999886433
|
| >3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0029 Score=60.41 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..++.|+||+++||++++|-+.+..|++. ..+++--+.|+..++. .|.. ..++ +++ .++++|+|.
T Consensus 19 ~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~g-~~~~~d~~~GG~~~~~----~G~~----~g~v-~ev--~p~~rlv~t 86 (158)
T 3ni8_A 19 MSFEITEEYYVPPEVLFNAFTDAYTLTRLSRG-SLAEVDLKVGGKFSLF----SGSI----LGEF-TEI--TKPHKIVEK 86 (158)
T ss_dssp CCEEEEEEESSCHHHHHHHHHCHHHHHHHTTT-SCCEECCSTTCEEEET----TTTE----EEEE-EEE--ETTTEEEEE
T ss_pred ceEEEEEEECCCHHHHHHHhcCHHHHHhhcCC-CccEEEccCCCEEEEe----cCCE----EEEE-EEE--eCCcEEEEE
Confidence 45888899999999999999999999999983 1233323445554432 2311 2221 122 477899876
Q ss_pred EEecCC---cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 004764 424 QVEGDF---DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE 487 (732)
Q Consensus 424 ~veGdf---k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~-~L~ALK~rAE 487 (732)
-.-.+. ....-.|+|++.++++|+|++...--+....... ..........-.. +|..|++++|
T Consensus 87 w~~~~~~~~~~s~vt~~l~~~~~~~T~ltl~~~g~~~~~~~~~-~~~~~~~~~GW~~~~L~~Lk~~Le 153 (158)
T 3ni8_A 87 WKFRDWNECDYSTVTVEFISVKENHTKLKLTHNNIPASNKYNE-GGVLERCKNGWTQNFLHNIEVILG 153 (158)
T ss_dssp EEETTSCSSCCEEEEEEEEEEETTEEEEEEEEECCCSSCTTCC-CCHHHHHHHHHHHTHHHHHHHTSC
T ss_pred EEecCCCCCCcEEEEEEEEecCCCCEEEEEEEEccCchhhhcc-chhHHHHHhChhHHHHHHHHHHhC
Confidence 543221 1357789999965577999997653221110010 0112345566777 5888888755
|
| >2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.016 Score=57.45 Aligned_cols=129 Identities=20% Similarity=0.159 Sum_probs=83.5
Q ss_pred EEecCc-ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEE
Q 004764 87 EVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQE 165 (732)
Q Consensus 87 ~~v~~~-~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E 165 (732)
+.+... .+.+..+-.++||++.||+.|||-+++.+|++.+. . +.+.||+.++. +. .. -.+.+
T Consensus 24 ~~~~~~~~~~l~i~R~f~Ap~e~VW~AlTdpe~l~~W~~~~~---~-d~r~GG~~~~~--~~-------~~----g~v~e 86 (192)
T 2luz_A 24 RTIPAGEARSIIIRQRYDAPVDEVWSACTDPNRINRWFIEPK---G-DLREGGNFALQ--GN-------AS----GDILR 86 (192)
T ss_dssp EEETTEEEEEEEEEEEESSCHHHHHHHHHCHHHHTTTSCCEE---E-CCSTTSEEEET--TS-------EE----EEEEE
T ss_pred eeccCCCceEEEEEEEeCCCHHHHHHHHcCHHHHheeeCCCc---c-cCccCcEEEee--cc-------cc----ceEEE
Confidence 444444 45688888999999999999999999999998742 2 44566665432 10 01 11233
Q ss_pred eecCCCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 166 LIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 166 ~~~~~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
.. ++++|.|+....+-....=.|.|++. +++|+|++.=...| ..... .+...=...|..|++.++..
T Consensus 87 v~---pp~rL~~tw~~~~~~~~~vt~~L~~~--g~gT~Ltl~h~~~~-----~~~~~-~~~~GW~~~Ld~L~~~L~g~ 153 (192)
T 2luz_A 87 CE---PPRRLTISWVYEGKPDSEVELRLSEE--GDGTLLELEHATTS-----EQMLV-EVGVGWEMALDFLGMFIRGD 153 (192)
T ss_dssp EE---TTTEEEEEEEESSSCEEEEEEEEEEE--TTEEEEEEEEEESC-----HHHHH-HHHHHHHHHHHHHHHHHTTC
T ss_pred Ee---cCeeEEEEEeecCCCCceEEEEEEEc--CCcEEEEEEEECCC-----HHHHH-HHhccHHHHHHHHHHHhCCC
Confidence 33 36888888654433334457999995 47899988766532 22222 23345567788888887754
|
| >1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0099 Score=56.12 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=81.4
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccc-------eEEEEEecCCCCeeEEEEEe-eeeeEEEEEEEEEEEEEEE
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNL-------ACSGRIPCPYPGRIWLEQRG-LQRALYWHIEARVVLDLQE 165 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v-------~~SeVLe~~~ggrirv~Qvg-~~~il~~~~~arvvLdv~E 165 (732)
..|..++.|+||++.||+++|| .+.+|++.- ..+ .++ +.||+. .. .+ ......+ ..+++
T Consensus 4 ~~i~~~r~~~Ap~e~Vw~A~Td--~l~~W~~p~~~~~~~~~~~-~~d-r~GG~~-~~-~~~~G~~~~~----g~v~e--- 70 (155)
T 1zxf_A 4 PFVRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPL-GVD-KKGGRW-YE-IDEQGEEHTF----GLIRK--- 70 (155)
T ss_dssp SCEEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSC-EEE-TTTTEE-EC-CCTTTSCCCC----EEEEE---
T ss_pred ceEEEEEEEeCCHHHHHHHHHh--hHHhhcCCCccccCCCceE-EEE-CCCCEE-EE-ECCCCCeEeE----EEEEE---
Confidence 4688999999999999999999 588887431 122 335 566664 11 21 1111111 12232
Q ss_pred eecCCCCceEEEEEE-cccc-----ceeeEEEEEEecCCCCeeEEEEEEEEecCCCc-cHHHHHHHHHhCHHHHHHHHHH
Q 004764 166 LIHSASDRELYFSMV-DGDF-----KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF-PAIFLERIIRSDLPVNLQALAC 238 (732)
Q Consensus 166 ~~~~~~~rrI~F~~v-eGDf-----k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi-P~~Lv~~~ir~~L~~~L~ALk~ 238 (732)
.. ++++|.|+-. .++. ....-.|+|++.+ +++|+|+..-.--+.... ........+...-...|..|++
T Consensus 71 v~---pp~rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~-~g~T~ltl~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~ 146 (155)
T 1zxf_A 71 VD---EPDTLVIGWRLNGFGRIDPDNSSEFTVTFVADG-QKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQD 146 (155)
T ss_dssp EE---TTTEEEEECCCSSSSSCCCSSCCCEEEEEEEET-TTEEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred EC---CCCEEEEEEecCCCCCCCCCCcEEEEEEEEECC-CCcEEEEEEEecccccccchhHHHHHHHHhhHHHHHHHHHH
Confidence 22 3688888743 2211 2345589999964 345988876553222211 2334555677788999999999
Q ss_pred HHHhhcc
Q 004764 239 RAERSFG 245 (732)
Q Consensus 239 raEr~~~ 245 (732)
.+++..+
T Consensus 147 ~l~~~~a 153 (155)
T 1zxf_A 147 KIDEEGA 153 (155)
T ss_dssp HHHHHHT
T ss_pred HHhhhhc
Confidence 8887543
|
| >3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.018 Score=54.84 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=78.6
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCcccccccccc-ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPN-LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSAS 171 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~-v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~ 171 (732)
...+..+..|+||++.||+++||-+.+..|++. ... ++.+.||+.+.. .| . + . -.+.+.. +
T Consensus 18 ~~~i~~~r~~~ap~e~Vw~A~Tdpe~l~~W~~g~~~~---~d~~~GG~~~~~-~G--~-~----~----g~v~ev~---p 79 (158)
T 3ni8_A 18 GMSFEITEEYYVPPEVLFNAFTDAYTLTRLSRGSLAE---VDLKVGGKFSLF-SG--S-I----L----GEFTEIT---K 79 (158)
T ss_dssp CCCEEEEEEESSCHHHHHHHHHCHHHHHHHTTTSCCE---ECCSTTCEEEET-TT--T-E----E----EEEEEEE---T
T ss_pred CceEEEEEEECCCHHHHHHHhcCHHHHHhhcCCCccE---EEccCCCEEEEe-cC--C-E----E----EEEEEEe---C
Confidence 346889999999999999999999999999983 332 344566665432 12 1 1 1 1112332 3
Q ss_pred CceEEEEEEcccc---ceeeEEEEEEecCCCCeeEEEEEEEEecCCCc--cHHHHHHHHHhCHHH-HHHHHHHHHH
Q 004764 172 DRELYFSMVDGDF---KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF--PAIFLERIIRSDLPV-NLQALACRAE 241 (732)
Q Consensus 172 ~rrI~F~~veGDf---k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi--P~~Lv~~~ir~~L~~-~L~ALk~raE 241 (732)
+++|.|+-.-++. ....=.|.|++.+ +++|+|++.-.--|...- +.. ........-.. .|..|++.+|
T Consensus 80 ~~rlv~tw~~~~~~~~~~s~vt~~l~~~~-~~~T~ltl~~~g~~~~~~~~~~~-~~~~~~~GW~~~~L~~Lk~~Le 153 (158)
T 3ni8_A 80 PHKIVEKWKFRDWNECDYSTVTVEFISVK-ENHTKLKLTHNNIPASNKYNEGG-VLERCKNGWTQNFLHNIEVILG 153 (158)
T ss_dssp TTEEEEEEEETTSCSSCCEEEEEEEEEEE-TTEEEEEEEEECCCSSCTTCCCC-HHHHHHHHHHHTHHHHHHHTSC
T ss_pred CcEEEEEEEecCCCCCCcEEEEEEEEecC-CCCEEEEEEEEccCchhhhccch-hHHHHHhChhHHHHHHHHHHhC
Confidence 6888876543222 1245678999853 478999998775443321 100 12234455555 4777777544
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0064 Score=68.10 Aligned_cols=103 Identities=12% Similarity=0.131 Sum_probs=77.6
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCC---CCeeEEEEEeeeeeEEEEEEEEEEEEE--EEeecC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPY---PGRIWLEQRGLQRALYWHIEARVVLDL--QELIHS 169 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~---ggrirv~Qvg~~~il~~~~~arvvLdv--~E~~~~ 169 (732)
+++.++.|+||++.||+..+|.++++++.|.....+++...+ .|... +..+. + +.| +..+ +++.
T Consensus 2 ~~~~~~~i~~p~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~-~~~~~-~-~~w------~~~~~~t~~~-- 70 (516)
T 3oh8_A 2 SLTTSHFIPFPREMVWDWHTRKGAVARLTPPFIPLNPITQAERLADGTTI-FSLPA-G-LKW------VARHDLSGFL-- 70 (516)
T ss_dssp CEEEEEEESSCHHHHHHHHHSTTHHHHHSCTTSSCEECSCCSCSSSCEEE-EECST-T-CEE------EEEECGGGCB--
T ss_pred eEEEEEEccCCHHHHHHHhcCcchHHHhCCCCCceEEecCCCCCcCCeEE-EecCC-C-cEE------EEEEcccccc--
Confidence 367899999999999999999999999999999998875321 12222 32221 1 223 2222 4443
Q ss_pred CCCceEEEEEEccc---cceeeEEEEEEecCCCCeeEEEEEEEEe
Q 004764 170 ASDRELYFSMVDGD---FKKFEGKWSIKSGTRSSTTTLSYEVNVI 211 (732)
Q Consensus 170 ~~~rrI~F~~veGD---fk~f~GsW~Lepl~~g~gT~LtY~l~V~ 211 (732)
.+++...+|+.|. |+.+.-...+++.+ ++|++++.++..
T Consensus 71 -~~~~F~d~~~~gp~~~~~~w~h~h~f~~~~--~gt~~~d~~~~~ 112 (516)
T 3oh8_A 71 -NGSRFTDVCLTAPVKALANWRHVHNFVDQD--GGTLITDSVSTR 112 (516)
T ss_dssp -TTTEEEEECCSCSSGGGSSCEEEEEEEEET--TEEEEEEEEECS
T ss_pred -CCCeEEEEeccCcccceeeeEEEEEEEEcC--CCcEEEEEEEee
Confidence 4789999999999 99999999999964 689999999874
|
| >2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.24 Score=46.58 Aligned_cols=123 Identities=11% Similarity=0.139 Sum_probs=68.6
Q ss_pred eeEEEEEEEecCH-HHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 94 RRIKAEMLVNADV-DSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 94 rrV~asi~V~AP~-e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
.+|..++.|+||+ +.||++||+-+.+.+|+.+-+. .+++.-.-.|... . ...+ .+.+.. .+
T Consensus 4 ~~i~~e~~i~A~~~~~VW~~IStPegL~~Wfad~v~-----~~g~~~~F~w~~~-~-----~~~~----~v~~~~---~~ 65 (136)
T 2lio_A 4 EKIHLEYLLNATSKNILWSAISTPTGLEDWFADKVV-----SDDKTVTFCWGKT-E-----QRQA----GIVAIR---AY 65 (136)
T ss_dssp EEEEEEEEECTTSCTHHHHGGGSHHHHTTTSSSEEE-----EETTEEEEESSSS-S-----EEEE----EEEEEE---TT
T ss_pred CcEEEEEEecCChHHHHHHHhCChhhhhcccCCCCc-----ccCceEEEEeCCC-C-----cEeE----EEEEEc---CC
Confidence 4688999999999 9999999999999999998643 1122212222110 1 0111 122322 47
Q ss_pred ceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 173 RELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 173 rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
++|+|+=..-+-....=.-+++..+..++|.|+-+ +|.-+.. ++. ++..=...|..||+.++
T Consensus 66 ~~i~FrW~~~~~~~~~~e~~l~~~~~t~~~~L~vt-----dFa~~~~-~e~-~~~gW~~~l~~Lk~~lg 127 (136)
T 2lio_A 66 SFIRFHWLDDENERDYFEIKMSYNELTGDYVLEIT-----DFSEADE-ADD-LKELWDSQVSKLRRTCG 127 (136)
T ss_dssp TEEEEEESSSSSSSCEEEEEEEECTTTSCEEEEEE-----EEECHHH-HHH-HHHHHHHHHHHHHHHTS
T ss_pred CEEEEEccCCCCCceEEEEEEEecCCCCcEEEEEe-----cCCCccc-hhH-HHhhHHHHHHHHHHHhh
Confidence 89999876432111111233333221256777555 5555543 222 44444556666776544
|
| >2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7 | Back alignment and structure |
|---|
Probab=93.16 E-value=4.9 Score=38.71 Aligned_cols=135 Identities=13% Similarity=0.169 Sum_probs=81.5
Q ss_pred EEEEEEEcCC---------HHHHHHHHh-ccCcccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEEEEEEEEEEe
Q 004764 346 VVASITVKAP---------VSEVWNVMT-AYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICE 414 (732)
Q Consensus 346 V~asI~I~AP---------pE~VW~vLt-DyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~~rvvLdv~e 414 (732)
++.++-|+.| .++||+=|- -+++=-.|+|++.+|+|+++.++.+ |..+ +.+. ....+ ++.
T Consensus 3 f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vlse~~~~~~R~l~--fg~~---~i~e~----vtl 73 (157)
T 2ffs_A 3 FEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRRLY--LPGL---VVEDE----VVL 73 (157)
T ss_dssp EEEEEECCCCCC---CCCCHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEEEE--ETTE---EEEEE----EEE
T ss_pred eeEEEecCCCCCCCCCccCHHHHHHHHHHHhcChhhcccccCeEEEEecCCCeEEEEEE--ECCC---ccceE----EEE
Confidence 4455556554 479998665 4555567999999999999887654 3222 2332 33444 444
Q ss_pred eCCCeEEEEEEe-cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccC---ccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 415 QHEQEISFEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN---SLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 415 ~~~rrIsf~~ve-Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d---~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.++.++.|.+.. |.-..-.-.-.++.-.+|.=.++|..+....+. .---..+++.+.+.....+++.||+.+...
T Consensus 74 ~~~~~v~f~~~~t~~~~gs~ltn~Iee~~~g~L~lrF~ye~~~p~~s~e~~~~~~~~~~ay~~ad~~Tv~~iRel~~~g 152 (157)
T 2ffs_A 74 KAPDSAHYSIKPSAEVAGGSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRFGAS 152 (157)
T ss_dssp ETTTEEEEEECCCSSSBEEEEEEEEEEEETTEEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cCCcEEEEEcccccCCCCceEEEEEeeCCCCcEEEEEEEEccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 588999999866 221121223345554455455555544443210 011234578888888889999999997643
|
| >2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.33 E-value=3.1 Score=38.88 Aligned_cols=122 Identities=9% Similarity=0.121 Sum_probs=71.4
Q ss_pred EEEEEEEEEcCCH-HHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 344 RCVVASITVKAPV-SEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 344 ~~V~asI~I~APp-E~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
..|+.++.|+||+ +.||++|++-+.+.+|+..- +. ..++...+..-+ .+ ...+++ +.-.++++|+|
T Consensus 4 ~~i~~e~~i~A~~~~~VW~~IStPegL~~Wfad~--v~---~~g~~~~F~w~~-~~----~~~~~v---~~~~~~~~i~F 70 (136)
T 2lio_A 4 EKIHLEYLLNATSKNILWSAISTPTGLEDWFADK--VV---SDDKTVTFCWGK-TE----QRQAGI---VAIRAYSFIRF 70 (136)
T ss_dssp EEEEEEEEECTTSCTHHHHGGGSHHHHTTTSSSE--EE---EETTEEEEESSS-SS----EEEEEE---EEEETTTEEEE
T ss_pred CcEEEEEEecCChHHHHHHHhCChhhhhcccCCC--Cc---ccCceEEEEeCC-CC----cEeEEE---EEEcCCCEEEE
Confidence 3588899999999 99999999999999999874 21 244444442211 12 123332 11247899999
Q ss_pred EEEecCCcceeEEEEEE--EcC-CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 423 EQVEGDFDSFQGKWLFE--QLG-SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Le--p~g-dG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
+=...+-.. ..+.|. ..+ .++|.|+.. .|.- ++. ++. ....=...|..||+.++..
T Consensus 71 rW~~~~~~~--~~~e~~l~~~~~t~~~~L~vt-dFa~------~~~-~e~-~~~gW~~~l~~Lk~~lg~~ 129 (136)
T 2lio_A 71 HWLDDENER--DYFEIKMSYNELTGDYVLEIT-DFSE------ADE-ADD-LKELWDSQVSKLRRTCGFL 129 (136)
T ss_dssp EESSSSSSS--CEEEEEEEECTTTSCEEEEEE-EEEC------HHH-HHH-HHHHHHHHHHHHHHHTSCC
T ss_pred EccCCCCCc--eEEEEEEEecCCCCcEEEEEe-cCCC------ccc-hhH-HHhhHHHHHHHHHHHhhhh
Confidence 865422111 244443 332 135777555 4431 222 233 5555567777788776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 732 | ||||
| d2d4ra1 | 146 | d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 | 4e-19 | |
| d2d4ra1 | 146 | d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 | 3e-17 | |
| d2rera1 | 155 | d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, c | 2e-16 | |
| d2rera1 | 155 | d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, c | 4e-16 | |
| d3cnwa1 | 138 | d.129.3.8 (A:3-140) Uncharacterized protein XoxI { | 8e-07 | |
| d3cnwa1 | 138 | d.129.3.8 (A:3-140) Uncharacterized protein XoxI { | 0.003 | |
| d2b79a1 | 137 | d.129.3.9 (A:1-137) Hypothetical protein SMU440 {S | 1e-06 | |
| d2b79a1 | 137 | d.129.3.9 (A:1-137) Hypothetical protein SMU440 {S | 7e-06 | |
| d2ns9a1 | 147 | d.129.3.10 (A:10-156) Hypothetical protein APE2225 | 1e-05 | |
| d2pcsa1 | 147 | d.129.3.10 (A:1-147) Hypothetical protein GKP20 {G | 4e-05 | |
| d2pcsa1 | 147 | d.129.3.10 (A:1-147) Hypothetical protein GKP20 {G | 0.001 | |
| d2qpva1 | 133 | d.129.3.8 (A:1-133) Uncharacterized protein Atu153 | 0.003 |
| >d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Hypothetical protein TTHA0849 species: Thermus thermophilus [TaxId: 274]
Score = 82.2 bits (202), Expect = 4e-19
Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 10/149 (6%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
++AE + A + V+ D E L ++ + + R +
Sbjct: 2 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESL-EVVAREGARTRSRWVAVAMGKKVR 60
Query: 155 IEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSS--TTTLSYEVNVIP 212
D + F +GDF ++EG W + TL+YE+ +
Sbjct: 61 WLEEEEWD-------DENLRNRFFSPEGDFDRYEGTWVFLPEGEGTRVVLTLTYELTIPI 113
Query: 213 RLNFPAIFLERIIRSDLPVNLQALACRAE 241
++++++ ++ L+ L R
Sbjct: 114 FGGLLRKLVQKLMQENVESLLKGLEERVL 142
|
| >d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Hypothetical protein TTHA0849 species: Thermus thermophilus [TaxId: 274]
Score = 77.2 bits (189), Expect = 3e-17
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 405
V A + AP V+ + E L + + ++++RE + R +
Sbjct: 3 VRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWL 62
Query: 406 ARVVMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LS 463
D F EGDFD ++G W+F G T + ++ ++ L
Sbjct: 63 EEEEWDDENLR---NRFFSPEGDFDRYEGTWVFLPEG-EGTRVVLTLTYELTIPIFGGLL 118
Query: 464 EAIMEEVIYEDLPSNLCAIRDYVEK 488
++++++ E++ S L + + V
Sbjct: 119 RKLVQKLMQENVESLLKGLEERVLA 143
|
| >d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Multifunctional enzyme TcmN, cyclase/aromatase domain species: Streptomyces glaucescens [TaxId: 1907]
Score = 75.0 bits (183), Expect = 2e-16
Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 7/158 (4%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIW-LEQRGLQRALYW 153
R ++VNA + VW+ D E + A + + G + L+ R W
Sbjct: 4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVW 63
Query: 154 HIEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPR 213
+ V D + G F W+ ++ + E ++ P
Sbjct: 64 EWVSHRVPDKGSRTVR------AHRVETGPFAYMNLHWTYRAVAGGTEMRWVQEFDMKPG 117
Query: 214 LNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQKIP 251
F + + + N++ + E Q+ P
Sbjct: 118 APFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQRTP 155
|
| >d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Multifunctional enzyme TcmN, cyclase/aromatase domain species: Streptomyces glaucescens [TaxId: 1907]
Score = 74.2 bits (181), Expect = 4e-16
Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 1/148 (0%)
Query: 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 408
SI V AP VW+V E PE+ A ++IL ++ + + V
Sbjct: 8 SIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVS 67
Query: 409 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIME 468
+ + G F W + + +++ E M+ + A M
Sbjct: 68 HRVPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGGTE-MRWVQEFDMKPGAPFDNAHMT 126
Query: 469 EVIYEDLPSNLCAIRDYVEKREGDNSLA 496
+ +N+ I+ +E R +
Sbjct: 127 AHLNTTTRANMERIKKIIEDRHREGQRT 154
|
| >d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Atu1531-like domain: Uncharacterized protein XoxI species: Bacillus cereus [TaxId: 1396]
Score = 46.7 bits (110), Expect = 8e-07
Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 16/145 (11%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
M + + VW + + L D++ P + R +
Sbjct: 3 HTTTSMEIFGSPEQVWQLIGGFNSLPDWL-------------PYIPSSKLTEGGRVRHLA 49
Query: 155 IEARVVLDLQELIHSASDRELYFSMVDGDF--KKFEGKWSIKSGTRSSTTTLSYEVNVIP 212
+ + + + +R +S+++ F + +K GT S+T+ + + P
Sbjct: 50 NPDGDTIIERLEVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTP 109
Query: 213 RLNFPAIFLERIIRSDLPVNLQALA 237
+ L+AL
Sbjct: 110 VEVSDEEA-INLFHGIYSDGLKALQ 133
|
| >d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Atu1531-like domain: Uncharacterized protein XoxI species: Bacillus cereus [TaxId: 1396]
Score = 36.7 bits (84), Expect = 0.003
Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 405
S+ + +VW ++ + +LP+ +P + SK+ + + +
Sbjct: 4 TTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRVRHLANPD------GDTII 57
Query: 406 ARVVMDICEQHEQEISFEQVEGDF--DSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLL 462
R+ + E+ ++ + F ++ ++ + +L+++S + S
Sbjct: 58 ERLEV--FNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEVSDE 115
Query: 463 SEAIMEEVIYED 474
+ IY D
Sbjct: 116 EAINLFHGIYSD 127
|
| >d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Smu440-like domain: Hypothetical protein SMU440 species: Streptococcus mutans [TaxId: 1309]
Score = 46.3 bits (108), Expect = 1e-06
Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 8/139 (5%)
Query: 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 408
+ V + W + + + + G KG + M +
Sbjct: 6 ELAVNTKKEDAWTYYSQVNQWFVWEGD-------LEQISLEGEFTTGQKGKMKMEDMPEL 58
Query: 409 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIME 468
+ E E + + F + + + L++SV ++
Sbjct: 59 AFTLVEVRENQCFSDLTATPFGNVLFEHEILENPDGTISLRHSVSLTD-SDTTEEALAFL 117
Query: 469 EVIYEDLPSNLCAIRDYVE 487
+ I+ D+P ++ ++ +E
Sbjct: 118 KQIFADVPESVGKLKQILE 136
|
| >d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Smu440-like domain: Hypothetical protein SMU440 species: Streptococcus mutans [TaxId: 1309]
Score = 44.0 bits (102), Expect = 7e-06
Identities = 14/147 (9%), Positives = 40/147 (27%), Gaps = 12/147 (8%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
+ E+ VN + W + + + +L +
Sbjct: 2 KFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQ------------ISLEGEFTTGQKGK 49
Query: 155 IEARVVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL 214
++ + +L + + + + + F + I + +
Sbjct: 50 MKMEDMPELAFTLVEVRENQCFSDLTATPFGNVLFEHEILENPDGTISLRHSVSLTDSDT 109
Query: 215 NFPAIFLERIIRSDLPVNLQALACRAE 241
A+ + I +D+P ++ L E
Sbjct: 110 TEEALAFLKQIFADVPESVGKLKQILE 136
|
| >d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: CoxG-like domain: Hypothetical protein APE2225 species: Aeropyrum pernix [TaxId: 56636]
Score = 43.8 bits (102), Expect = 1e-05
Identities = 17/152 (11%), Positives = 41/152 (26%), Gaps = 11/152 (7%)
Query: 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWH 154
R + V+ + V+ LTD +R + P + R
Sbjct: 4 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFP---GFKSVEVEDGSFTI-----ELRLSLGP 55
Query: 155 IEARVVLDLQELIHSASDRELYF--SMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIP 212
+ + + G F +++++ S + +E NV
Sbjct: 56 LRGDARVRASFEDLEKPSKATVKGSGRGAGSTLDFTLRFAVEPSGGGSRVSWVFEGNVGG 115
Query: 213 RL-NFPAIFLERIIRSDLPVNLQALACRAERS 243
+ L+ + R + + + +
Sbjct: 116 LAASMGGRVLDSLARRMINDVISGVKRELGEA 147
|
| >d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: CoxG-like domain: Hypothetical protein GKP20 species: Geobacillus kaustophilus [TaxId: 1462]
Score = 42.1 bits (98), Expect = 4e-05
Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 7/147 (4%)
Query: 99 EMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEAR 158
+ + V+ VW+ L D L+ + I + + + A+ +A
Sbjct: 6 SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIG---EDKYKADLQIGIAAVKGKYDAI 62
Query: 159 VVLDLQELIHSASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPA 218
+ + + + + L F EG + T L+Y + A
Sbjct: 63 IEVTDIKPPYHY--KLLVNGEGGPGFVNAEGVIDLTPIND-ECTQLTYTYSAEVG-GKVA 118
Query: 219 IFLERIIRSDLPVNLQALACRAERSFG 245
+R++ + + + ++
Sbjct: 119 AIGQRMLGGVAKLLISDFFKKIQKEIA 145
|
| >d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: CoxG-like domain: Hypothetical protein GKP20 species: Geobacillus kaustophilus [TaxId: 1462]
Score = 37.9 bits (87), Expect = 0.001
Identities = 16/108 (14%), Positives = 36/108 (33%)
Query: 349 SITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARV 408
SI +K V EVW+ + L + + +++ + K + V
Sbjct: 6 SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEV 65
Query: 409 VMDICEQHEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKM 456
H + + + F + +G + T L Y+ +++
Sbjct: 66 TDIKPPYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEV 113
|
| >d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Atu1531-like domain: Uncharacterized protein Atu1531 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.1 bits (83), Expect = 0.003
Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 14/98 (14%)
Query: 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLH 405
+ ++V+ P +EV++ +P LA E+ + G
Sbjct: 7 RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGEDWIAKGGPLG---------- 56
Query: 406 ARVVMDICEQHEQE-ISFEQVEGDFDSFQGKWLFEQLG 442
V ++ +E I D +
Sbjct: 57 -EVRVNFAPHNEFGVIDHVVTLP--DGLKVYNALRVTP 91
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| d2d4ra1 | 146 | Hypothetical protein TTHA0849 {Thermus thermophilu | 99.83 | |
| d2d4ra1 | 146 | Hypothetical protein TTHA0849 {Thermus thermophilu | 99.81 | |
| d1t17a_ | 148 | Hypothetical protein CC1736 {Caulobacter crescentu | 99.76 | |
| d2rera1 | 155 | Multifunctional enzyme TcmN, cyclase/aromatase dom | 99.75 | |
| d2rera1 | 155 | Multifunctional enzyme TcmN, cyclase/aromatase dom | 99.72 | |
| d2b79a1 | 137 | Hypothetical protein SMU440 {Streptococcus mutans | 99.59 | |
| d1t17a_ | 148 | Hypothetical protein CC1736 {Caulobacter crescentu | 99.58 | |
| d2ns9a1 | 147 | Hypothetical protein APE2225 {Aeropyrum pernix [Ta | 99.53 | |
| d2b79a1 | 137 | Hypothetical protein SMU440 {Streptococcus mutans | 99.53 | |
| d3cnwa1 | 138 | Uncharacterized protein XoxI {Bacillus cereus [Tax | 99.52 | |
| d3cnwa1 | 138 | Uncharacterized protein XoxI {Bacillus cereus [Tax | 99.51 | |
| d2ns9a1 | 147 | Hypothetical protein APE2225 {Aeropyrum pernix [Ta | 99.47 | |
| d2pcsa1 | 147 | Hypothetical protein GKP20 {Geobacillus kaustophil | 99.34 | |
| d2pcsa1 | 147 | Hypothetical protein GKP20 {Geobacillus kaustophil | 99.18 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 98.98 | |
| d2qpva1 | 133 | Uncharacterized protein Atu1531 {Agrobacterium tum | 98.92 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 98.9 | |
| d1ln1a_ | 203 | Phosphatidylcholine transfer protein {Human (Homo | 98.83 | |
| d2qpva1 | 133 | Uncharacterized protein Atu1531 {Agrobacterium tum | 98.75 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 98.62 | |
| d1xuva_ | 163 | Hypothetical protein MM0500 {Methanosarcina mazei | 98.58 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 98.46 | |
| d1ln1a_ | 203 | Phosphatidylcholine transfer protein {Human (Homo | 98.41 | |
| d1txca1 | 147 | Plant pathogenesis-related protein PR10 {Jicama (P | 98.41 | |
| d2il5a1 | 164 | Hypothetical protein SA2116 {Staphylococcus aureus | 98.28 | |
| d2bk0a1 | 153 | Major allergen api g 1 {Celery (Apium graveolens) | 98.27 | |
| d1xfsa_ | 165 | Hypothetical protein NE0264 {Nitrosomonas europaea | 98.24 | |
| d2psoa1 | 197 | Star-related lipid transfer protein 13 {Human (Hom | 98.23 | |
| d1xdfa1 | 157 | Plant pathogenesis-related protein PR10 {Yellow lu | 98.13 | |
| d1fm4a_ | 159 | Major tree pollen allergen {European white birch ( | 98.09 | |
| d1e09a_ | 159 | Major tree pollen allergen {Sweet cherry (Prunus a | 98.07 | |
| d1icxa_ | 155 | Plant pathogenesis-related protein PR10 {Yellow lu | 98.06 | |
| d1z94a1 | 143 | Hypothetical protein CV1439 {Chromobacterium viola | 98.03 | |
| d2bk0a1 | 153 | Major allergen api g 1 {Celery (Apium graveolens) | 97.94 | |
| d1xn5a_ | 138 | Hypothetical protein BH1534 {Bacillus halodurans [ | 97.9 | |
| d1txca1 | 147 | Plant pathogenesis-related protein PR10 {Jicama (P | 97.87 | |
| d1xuva_ | 163 | Hypothetical protein MM0500 {Methanosarcina mazei | 97.84 | |
| d2psoa1 | 197 | Star-related lipid transfer protein 13 {Human (Hom | 97.84 | |
| d1xn6a_ | 143 | Hypothetical protein BC4709 {Bacillus cereus [TaxI | 97.81 | |
| d1xfsa_ | 165 | Hypothetical protein NE0264 {Nitrosomonas europaea | 97.78 | |
| d1icxa_ | 155 | Plant pathogenesis-related protein PR10 {Yellow lu | 97.71 | |
| d1zxfa1 | 155 | Calicheamicin gene cluster protein CalC {Micromono | 97.68 | |
| d2nn5a1 | 160 | Hypothetical protein EF2215 {Enterococcus faecalis | 97.64 | |
| d1e09a_ | 159 | Major tree pollen allergen {Sweet cherry (Prunus a | 97.63 | |
| d1xn5a_ | 138 | Hypothetical protein BH1534 {Bacillus halodurans [ | 97.55 | |
| d1z94a1 | 143 | Hypothetical protein CV1439 {Chromobacterium viola | 97.52 | |
| d2il5a1 | 164 | Hypothetical protein SA2116 {Staphylococcus aureus | 97.52 | |
| d3elia1 | 143 | Uncharacterized protein SPO3351 {Silicibacter pome | 97.48 | |
| d2nn5a1 | 160 | Hypothetical protein EF2215 {Enterococcus faecalis | 97.41 | |
| d1xdfa1 | 157 | Plant pathogenesis-related protein PR10 {Yellow lu | 97.38 | |
| d1fm4a_ | 159 | Major tree pollen allergen {European white birch ( | 97.31 | |
| d1xn6a_ | 143 | Hypothetical protein BC4709 {Bacillus cereus [TaxI | 97.23 | |
| d2k5ga1 | 183 | Uncharacterized protein BPP1335 {Bordetella parape | 97.15 | |
| d1zxfa1 | 155 | Calicheamicin gene cluster protein CalC {Micromono | 96.93 | |
| d2k5ga1 | 183 | Uncharacterized protein BPP1335 {Bordetella parape | 96.72 | |
| d3elia1 | 143 | Uncharacterized protein SPO3351 {Silicibacter pome | 96.67 | |
| d1vjha_ | 120 | Hypothetical protein At1G24000 {Thale cress (Arabi | 96.1 | |
| d1vjha_ | 120 | Hypothetical protein At1G24000 {Thale cress (Arabi | 95.77 | |
| d1x53a1 | 132 | Activator of 90 kda heat shock protein ATPase homo | 95.74 | |
| d1x53a1 | 132 | Activator of 90 kda heat shock protein ATPase homo | 94.37 | |
| d2ffsa1 | 151 | Hypothetical protein PA1206 {Pseudomonas aeruginos | 85.5 |
| >d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Hypothetical protein TTHA0849 species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=2.2e-19 Score=164.64 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=116.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
+|+++++|+||+++||++|+||++||+|+|+|.+++++++.++...+..........+.+..+++. ..+++.|.|++
T Consensus 2 ~v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~ 78 (146)
T d2d4ra1 2 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEEEW---DDENLRNRFFS 78 (146)
T ss_dssp EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE---ETTTTEEEEEE
T ss_pred EEEEEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEecCCcceEEEEEEeeeeeEEEEEEEEE---cCCCCEEEEEE
Confidence 488999999999999999999999999999999999999988877554432222223455555432 24678999999
Q ss_pred EecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccC--ccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 425 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKN--SLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 425 veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d--~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
..|+|..+.|.|+|++.++| |+|+|++++++..+ ..+++.++++.+++++..+|++|+++++..
T Consensus 79 ~~g~~~~~~g~w~l~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 144 (146)
T d2d4ra1 79 PEGDFDRYEGTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA 144 (146)
T ss_dssp EEESCSEEEEEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcceEEEEEEEEecCCc-eEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998865 99999999886421 246788999999999999999999999875
|
| >d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Hypothetical protein TTHA0849 species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=6.4e-19 Score=161.54 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=113.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+|++++.|+||++.||++|+||++|++|+|.+++++++.. +++...+..+.......+.++.. ++.. ..+++
T Consensus 2 ~v~~~~~I~ap~~~V~~~l~D~~~~~~w~p~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~ 73 (146)
T d2d4ra1 2 EVRAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAR-EGARTRSRWVAVAMGKKVRWLEE----EEWD---DENLR 73 (146)
T ss_dssp EEEEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEE-ETTEEEEEEEEEETTEEEEEEEE----EEEE---TTTTE
T ss_pred EEEEEEEECCCHHHHHHHHHChhhHHhhccccEEEEEEEe-cCCcceEEEEEEeeeeeEEEEEE----EEEc---CCCCE
Confidence 5899999999999999999999999999999999999975 56655555444433333333332 2222 35789
Q ss_pred EEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCC----ccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 175 LYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN----FPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 175 I~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p----iP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
|.|+++.|+|..|.|.|+|++. ++||+|+|++++++..+ ++..++++.+++++..+|.+|+++++..
T Consensus 74 i~~~~~~g~~~~~~g~w~l~~~--~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 144 (146)
T d2d4ra1 74 NRFFSPEGDFDRYEGTWVFLPE--GEGTRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA 144 (146)
T ss_dssp EEEEEEEESCSEEEEEEEEEEC--SSSEEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEccCCcceEEEEEEEEec--CCceEEEEEEEEEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999996 46799999999987665 5567889999999999999999999864
|
| >d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Hypothetical protein CC1736 species: Caulobacter crescentus [TaxId: 155892]
Probab=99.76 E-value=7e-18 Score=157.23 Aligned_cols=141 Identities=14% Similarity=0.233 Sum_probs=113.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC--CEE--EEEEE-eccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKV--RILQE-GCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~--g~~--rv~q~-g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
+++..+.+|++||++||+++.|+|+||+|+|+|.+++|+++.+ ... ..... +..+.. ..+..++. ...+..
T Consensus 2 ~~~~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~ 77 (148)
T d1t17a_ 2 HRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLR-EKFATRVR---RDKDAR 77 (148)
T ss_dssp CEEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTSSC-CEEEEEEE---EETTTC
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeeeeE-EEEEEEee---ecCCce
Confidence 4567788999999999999999999999999999999998753 332 22222 333322 34555432 224557
Q ss_pred eEEEEEEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhC
Q 004764 419 EISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREG 491 (732)
Q Consensus 419 rIsf~~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~ 491 (732)
.+.+.+..|+|+.+.|.|+|++.++ +|+|+|.+++++. .++...+++.++.+.+..++++|++||++.|+
T Consensus 78 ~~~~~~~~g~f~~l~~~W~f~~~~~-~T~V~~~l~fe~~--~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~lyg 147 (148)
T d1t17a_ 78 SIDVSLLYGPFKRLNNGWRFMPEGD-ATRVEFVIEFAFK--SALLDAMLAANVDRAAGKLIACFEARAQQLHG 147 (148)
T ss_dssp EEEEEESSTTSSCEEEEEEEEEETT-EEEEEEEEEECCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeccCchhhhcccceeeccCCC-ceEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7888888899999999999999876 5999999999974 67889999999999999999999999999986
|
| >d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Multifunctional enzyme TcmN, cyclase/aromatase domain species: Streptomyces glaucescens [TaxId: 1907]
Probab=99.75 E-value=9.8e-18 Score=154.49 Aligned_cols=145 Identities=21% Similarity=0.351 Sum_probs=112.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEE---eccceeEEEEEEEEEEEEEeeCCCeEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE---GCKGLLYMVLHARVVMDICEQHEQEIS 421 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~---g~~gll~~~~~~rvvLdv~e~~~rrIs 421 (732)
+++.+|+|+||++.||++|+|+++||+|+|++.+++++++.+++...... +..+. ...+...++. ..+...+.
T Consensus 4 ~~e~si~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~ 79 (155)
T d2rera1 4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGR-VWEWVSHRVP---DKGSRTVR 79 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSC-CCEEEEEEEE---EGGGTEEE
T ss_pred EEEEEEEECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeee-eEEEEEEEEE---cCCccEEE
Confidence 57899999999999999999999999999999999999887765533222 12222 1233343222 23456788
Q ss_pred EEEEe-cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 004764 422 FEQVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 494 (732)
Q Consensus 422 f~~ve-Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~~~ 494 (732)
|.... +++..++|.|+|++.++ +|+|++..++.+.+..+++..++.+.+++++..+|++||+++|++....+
T Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~~~~ 152 (155)
T d2rera1 80 AHRVETGPFAYMNLHWTYRAVAG-GTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQ 152 (155)
T ss_dssp EEESSCTTEEEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeecCccceeeEEEEEEeecCC-ccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 88765 77889999999999875 59988888777654456777789999999999999999999998876544
|
| >d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Multifunctional enzyme TcmN, cyclase/aromatase domain species: Streptomyces glaucescens [TaxId: 1907]
Probab=99.72 E-value=4.3e-17 Score=150.14 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=110.2
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEee-eeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGL-QRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~-~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
.++..+|.|+||++.||++|+||++|++|+|.++++++++..+++......... ........ ...++... ..
T Consensus 3 ~~~e~si~I~Ap~~~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~ 75 (155)
T d2rera1 3 ARTDNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEW----VSHRVPDK---GS 75 (155)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEECCSSCEEEEEEECCCTTSCCCEE----EEEEEEEG---GG
T ss_pred CEEEEEEEECCCHHHHHHHHHChhhHhhhhhhceEEEEeecCCCceEEEEEEEEeeeeeeEEE----EEEEEEcC---Cc
Confidence 468899999999999999999999999999999999998764433221111110 00111111 12222222 35
Q ss_pred ceEEEEEEc-cccceeeEEEEEEecCCCCeeEE--EEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhcccccc
Q 004764 173 RELYFSMVD-GDFKKFEGKWSIKSGTRSSTTTL--SYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGWNQK 249 (732)
Q Consensus 173 rrI~F~~ve-GDfk~f~GsW~Lepl~~g~gT~L--tY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~~~~~ 249 (732)
..+.|.... |++..+.|.|+|++.+ +||+| +|++.+.|.+++|..++.+.++++++.+|++||+++|++.....+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~w~~~~~~--~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lk~~~E~~~~~~~~ 153 (155)
T d2rera1 76 RTVRAHRVETGPFAYMNLHWTYRAVA--GGTEMRWVQEFDMKPGAPFDNAHMTAHLNTTTRANMERIKKIIEDRHREGQR 153 (155)
T ss_dssp TEEEEEESSCTTEEEEEEEEEEEEET--TEEEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cEEEEEeecCccceeeEEEEEEeecC--CccEEEEEEEEEECCCccccHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC
Confidence 778888865 5689999999999975 56655 556677788999999999999999999999999999998776665
Q ss_pred cc
Q 004764 250 IP 251 (732)
Q Consensus 250 ~~ 251 (732)
.|
T Consensus 154 ~p 155 (155)
T d2rera1 154 TP 155 (155)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Smu440-like domain: Hypothetical protein SMU440 species: Streptococcus mutans [TaxId: 1309]
Probab=99.59 E-value=1.4e-14 Score=130.90 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=103.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 424 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ 424 (732)
.++.+|.|+||++.||++|+|+++||+|+|.+.+++.....+.+.........+. .+.+ ++ ....+++++.|..
T Consensus 2 ~~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~--~v---~~~~p~~~~~~~~ 75 (137)
T d2b79a1 2 KFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMP-ELAF--TL---VEVRENQCFSDLT 75 (137)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSC-CEEE--EE---CCCBTTTEEEEEE
T ss_pred ceEEEEEEcCCHHHHHHHHhhhhhCccccCcccceeecccccceEEEEEEEcCCc-ceee--ee---ecccCCcEEEEEe
Confidence 5789999999999999999999999999999999987654322222222211221 1222 21 1224668999976
Q ss_pred EecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 425 VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 425 veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.+++....+.|.+++.++|+|+|+|++.+... ..++...++.+.+..+++..|+.||+++|.
T Consensus 76 -~~~~~~~~~~~~~~~~~~g~t~vt~~~~~~g~-~~~~~~~~~~~~v~~~~~~~l~~LK~~~Ea 137 (137)
T d2b79a1 76 -ATPFGNVLFEHEILENPDGTISLRHSVSLTDS-DTTEEALAFLKQIFADVPESVGKLKQILET 137 (137)
T ss_dssp -EETTEEEEEEEEEEECTTSCEEEEEEEEECSC-SCCTTHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred -cccceeeeeEEEEccCCCCcEEEEEEEecccc-cchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46677889999999999999999999998742 345667789999999999999999999984
|
| >d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: oligoketide cyclase/dehydrase-like domain: Hypothetical protein CC1736 species: Caulobacter crescentus [TaxId: 155892]
Probab=99.58 E-value=8.3e-15 Score=136.10 Aligned_cols=143 Identities=15% Similarity=0.233 Sum_probs=111.7
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCe---eEEE-EEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGR---IWLE-QRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggr---irv~-Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
++...+..|++||+.||+++.|+|+||+|+|.+.+|+|++..+++. +... ..+... +...+. ..... .
T Consensus 2 ~~~~~~~vi~~~~e~vf~vV~Dve~Yp~FlP~c~~~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~---~ 73 (148)
T d1t17a_ 2 HRHVVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSF-LREKFA----TRVRR---D 73 (148)
T ss_dssp CEEEEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEECSTTS-SCCEEE----EEEEE---E
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHhhhhhccccCccEEEecccccccceeeEEEEEEeee-eEEEEE----EEeee---c
Confidence 3567888999999999999999999999999999999987632221 1111 111111 111111 11111 1
Q ss_pred CCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhccc
Q 004764 170 ASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGW 246 (732)
Q Consensus 170 ~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~~~ 246 (732)
.....+.+.+..|.|+.+.|.|.+++.+ ++|+|+|.++++.+.+++..++..++++.+..+++|.++||+.++++
T Consensus 74 ~~~~~~~~~~~~g~f~~l~~~W~f~~~~--~~T~V~~~l~fe~~~~l~~~~~~~~~~~~~~~~i~aF~~Ra~~lyg~ 148 (148)
T d1t17a_ 74 KDARSIDVSLLYGPFKRLNNGWRFMPEG--DATRVEFVIEFAFKSALLDAMLAANVDRAAGKLIACFEARAQQLHGA 148 (148)
T ss_dssp TTTCEEEEEESSTTSSCEEEEEEEEEET--TEEEEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCceEEEEeccCchhhhcccceeeccCC--CceEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4577899999999999999999999964 68999999999999999999999999999999999999999998753
|
| >d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: CoxG-like domain: Hypothetical protein APE2225 species: Aeropyrum pernix [TaxId: 56636]
Probab=99.53 E-value=1.6e-13 Score=122.88 Aligned_cols=140 Identities=10% Similarity=0.126 Sum_probs=94.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
.+++.+|.|+|||++||++|+|+++||+|+|+|+++++.....+... ....+............... ..+....+.
T Consensus 3 ~k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (147)
T d2ns9a1 3 VRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDGSFTIEL---RLSLGPLRGDARVRASFEDL-EKPSKATVK 78 (147)
T ss_dssp EEEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETTEEEEEE---EEESSSSEEEEEEEEEEEEE-ETTTEEEEE
T ss_pred EEEEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeecccccceeE---EEEEEEEeeEeeeeeeeeee-cCCcceeEE
Confidence 57999999999999999999999999999999999876433222211 11111111222222222222 233333333
Q ss_pred EEe---cCCcceeEEEEEEEcCCCeEEEEEEEEEEecc-CccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 424 QVE---GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-NSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 424 ~ve---Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~-d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
... +....+.+.|.|++.++ +|+|+|+.++.+.+ ...++..++.+.+++.+...|+.|+++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~-gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~ 146 (147)
T d2ns9a1 79 GSGRGAGSTLDFTLRFAVEPSGG-GSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE 146 (147)
T ss_dssp EEEECSSEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EeeeccccceeeEEEEEEEecCC-CcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 23447788999999765 59999999887642 234567789999999999999999999864
|
| >d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Smu440-like domain: Hypothetical protein SMU440 species: Streptococcus mutans [TaxId: 1309]
Probab=99.53 E-value=1.1e-13 Score=124.76 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=103.8
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCC-eeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPG-RIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~gg-rirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
+++.+|.|+||+++||++|+|+++||+|+|.+.+++.....+.| ..++...+... +. ..+.++. +++
T Consensus 2 ~~s~si~I~Ap~e~Vw~~~~d~~~~~~W~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~--------~~v~~~~---p~~ 69 (137)
T d2b79a1 2 KFSFELAVNTKKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMPE-LA--------FTLVEVR---ENQ 69 (137)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEESSSSSTTCEEEEEETTSCC-EE--------EEECCCB---TTT
T ss_pred ceEEEEEEcCCHHHHHHHHhhhhhCccccCcccceeecccccceEEEEEEEcCCcc-ee--------eeeeccc---CCc
Confidence 47899999999999999999999999999999999875443333 33333332211 11 1233433 467
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEe-cCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVI-PRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~-P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++|+. .|++....+.|.+++.+ +++|+|+|++.+. +..++...++...++++++..|.+||+.+|.
T Consensus 70 ~~~~~~-~~~~~~~~~~~~~~~~~-~g~t~vt~~~~~~g~~~~~~~~~~~~~v~~~~~~~l~~LK~~~Ea 137 (137)
T d2b79a1 70 CFSDLT-ATPFGNVLFEHEILENP-DGTISLRHSVSLTDSDTTEEALAFLKQIFADVPESVGKLKQILET 137 (137)
T ss_dssp EEEEEE-EETTEEEEEEEEEEECT-TSCEEEEEEEEECSCSCCTTHHHHHHHHHTTHHHHHHHHHHHHTC
T ss_pred EEEEEe-cccceeeeeEEEEccCC-CCcEEEEEEEecccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899976 56688889999999976 5689999999998 5666777788899999999999999999983
|
| >d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Atu1531-like domain: Uncharacterized protein XoxI species: Bacillus cereus [TaxId: 1396]
Probab=99.52 E-value=2.3e-13 Score=124.85 Aligned_cols=133 Identities=15% Similarity=0.288 Sum_probs=100.2
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
|.++..++.|+|||++||++|+||++||+|+|.+.+++..+ ++..+.. ....|.. +..++ .....+++++.|
T Consensus 1 m~~~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~--~G~~R~~-~~~~g~~---~~E~l--~~~d~~~~~~~y 72 (138)
T d3cnwa1 1 MAHTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTE--GGRVRHL-ANPDGDT---IIERL--EVFNDKERYYTY 72 (138)
T ss_dssp CEEEEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEEG--GGTEEEE-ECTTCCE---EEEEE--EEEETTTTEEEE
T ss_pred CCcEEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEeec--CceeEEE-EecCCce---eEEEE--EEEeCCCcEEEE
Confidence 45789999999999999999999999999999999998753 2334432 2223321 22332 122245589999
Q ss_pred EEEecCC--cceeEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 423 EQVEGDF--DSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 423 ~~veGdf--k~f~G~W~Lep~gdG-~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
+.++|++ ..+.|+|+|+|.++| +|+|+|...|+|.+ +.+..+..+++..+...|++|+++.
T Consensus 73 ~~~~~~~p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~---~~~~~~~~~~~~~~~~~l~~L~~~f 136 (138)
T d3cnwa1 73 SIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVE---VSDEEAINLFHGIYSDGLKALQQAF 136 (138)
T ss_dssp EEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEESS---SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCcceeeEEEEEEEECCCCCeEEEEEEEEEecCC---CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999875 588999999998764 69999999999842 4455666778888889999998874
|
| >d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Atu1531-like domain: Uncharacterized protein XoxI species: Bacillus cereus [TaxId: 1396]
Probab=99.51 E-value=1.5e-13 Score=126.17 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=100.8
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+++.++.|+|||++||++|+||+++++|+|.+.+++.. ++|.+|.........+ ...+.+.. ..+++
T Consensus 3 ~~~~si~I~A~pe~VW~~v~df~~~~~W~p~v~~~~~~---~~G~~R~~~~~~g~~~--------~E~l~~~d--~~~~~ 69 (138)
T d3cnwa1 3 HTTTSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLT---EGGRVRHLANPDGDTI--------IERLEVFN--DKERY 69 (138)
T ss_dssp EEEEEEEESSCHHHHHHHHCCTTCGGGTCTTCSEEEEE---GGGTEEEEECTTCCEE--------EEEEEEEE--TTTTE
T ss_pred cEEEEEEEeCCHHHHHHHHhCccchHHHhcccceeEee---cCceeEEEEecCCcee--------EEEEEEEe--CCCcE
Confidence 58999999999999999999999999999999999774 2454444433222111 11222222 35789
Q ss_pred EEEEEEccc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 175 LYFSMVDGD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 175 I~F~~veGD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
++|++++|+ ++.+.|.|+|+|.+.+++|.|+|+++++|....|.. +..+++......|.+|+++.
T Consensus 70 ~~y~~~~~~~p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p~~~~~~~-~~~~~~~~~~~~l~~L~~~f 136 (138)
T d3cnwa1 70 YTYSIMNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEVSDEE-AINLFHGIYSDGLKALQQAF 136 (138)
T ss_dssp EEEEEEECSSSEEEEEEEEEEEECSSTTCEEEEEEEEEEESSSCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcceeeEEEEEEEECCCCCeEEEEEEEEEecCCCCHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 999999998 489999999999865567999999999997655554 44667888889999998864
|
| >d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: CoxG-like domain: Hypothetical protein APE2225 species: Aeropyrum pernix [TaxId: 56636]
Probab=99.47 E-value=2.7e-13 Score=121.38 Aligned_cols=138 Identities=13% Similarity=0.066 Sum_probs=95.2
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
+++++|.|+||++.||++|+|+++|++|+|.++++++... ..+.. .......+........ .+.+... .....
T Consensus 4 k~e~si~I~ap~e~Vw~~l~D~~~~~~w~p~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 76 (147)
T d2ns9a1 4 RYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEVEDG-SFTIE---LRLSLGPLRGDARVRA--SFEDLEK-PSKAT 76 (147)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEEEETT-EEEEE---EEEESSSSEEEEEEEE--EEEEEET-TTEEE
T ss_pred EEEEEEEEcCCHHHHHHHHhCHhhhhhcccchhheeeccc-cccee---EEEEEEEEeeEeeeee--eeeeecC-Cccee
Confidence 6899999999999999999999999999999999876432 11111 1111111222222222 2222221 12222
Q ss_pred EEEEEEcc-ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCcc---HHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 175 LYFSMVDG-DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP---AIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 175 I~F~~veG-Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP---~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
..+....| ....+.+.|.|++. +++|+|+|++++.++++++ ..++...+++.+...|.+||++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~--~~gt~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~ 145 (147)
T d2ns9a1 77 VKGSGRGAGSTLDFTLRFAVEPS--GGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELG 145 (147)
T ss_dssp EEEEEECSSEEEEEEEEEEEEEE--TTEEEEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeeeccccceeeEEEEEEEec--CCCcEEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333 36788999999995 5889999999998887654 468899999999999999999876
|
| >d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: CoxG-like domain: Hypothetical protein GKP20 species: Geobacillus kaustophilus [TaxId: 1462]
Probab=99.34 E-value=2.1e-11 Score=110.58 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=89.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE--
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE-- 423 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~-- 423 (732)
+..++.|+||+++||++|+|+++||+|+|+|.+++++++......+. ..... +...+..+..+.... .+......
T Consensus 3 ~s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (147)
T d2pcsa1 3 GNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQ-IGIAA-VKGKYDAIIEVTDIK-PPYHYKLLVN 79 (147)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEE-ECCGG-GCEEEEEEEEEEEEE-TTTEEEEEEE
T ss_pred CCceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCCCEEEEEEE-Eeecc-eeeeeEEEEEEeccC-cccceeEeec
Confidence 56788999999999999999999999999999999886432222222 22222 223444443332222 23333222
Q ss_pred EEe-cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 424 QVE-GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 424 ~ve-Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
... +.+..+.+.|.+.+.++++|+|+|++++++. ++++ .+..+++......++++|.+++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~--g~l~-~l~~~li~~~~~~~~~~f~~~~~~~l 144 (147)
T d2pcsa1 80 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVG--GKVA-AIGQRMLGGVAKLLISDFFKKIQKEI 144 (147)
T ss_dssp EEETTEEEEEEEEEEEEESSSSEEEEEEEEEEEEE--SGGG-GGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcceeEEeeecccCCcEEEEEEEEEEEC--cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 4444677888888888889999999999874 3332 34455555556666666666665543
|
| >d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: CoxG-like domain: Hypothetical protein GKP20 species: Geobacillus kaustophilus [TaxId: 1462]
Probab=99.18 E-value=1.3e-10 Score=105.27 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=87.4
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
+++++.|+||+++||++|+|+++|++|+|.+.++++++. +.....+. +... .+...+.... .+.+... .....+
T Consensus 3 ~s~~~~i~~~~e~v~~~l~D~~~~~~~~Pg~~~~~~~~~-~~~~~~~~-~~~g-~~~~~~~~~~--~~~~~~~-~~~~~~ 76 (147)
T d2pcsa1 3 GNGSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGE-DKYKADLQ-IGIA-AVKGKYDAII--EVTDIKP-PYHYKL 76 (147)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEET-TEEEEEEE-ECCG-GGCEEEEEEE--EEEEEET-TTEEEE
T ss_pred CCceEEeCCCHHHHHHHHcCHHHHHhhCcchhhceecCC-CEEEEEEE-Eeec-ceeeeeEEEE--EEeccCc-ccceeE
Confidence 678999999999999999999999999999999998753 22122111 2111 1122222222 2233322 111222
Q ss_pred EEEEE-ccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 176 YFSMV-DGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 176 ~F~~v-eGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
..... .+.+..+.+.|.+.+.+ +++|+|+|.++++.+.+++. ++.+++......++.+..+++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~T~v~~~~~~~~~g~l~~-l~~~li~~~~~~~~~~f~~~~~~~ 143 (147)
T d2pcsa1 77 LVNGEGGPGFVNAEGVIDLTPIN-DECTQLTYTYSAEVGGKVAA-IGQRMLGGVAKLLISDFFKKIQKE 143 (147)
T ss_dssp EEEEEETTEEEEEEEEEEEEESS-SSEEEEEEEEEEEEESGGGG-GCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccchhcceeEEeeeccc-CCcEEEEEEEEEEECcHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33456677777777654 68999999999999888654 345555555566666666655543
|
| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Cholesterol-regulated Start protein 4 (Stard4). species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=1.2e-08 Score=97.82 Aligned_cols=152 Identities=11% Similarity=-0.037 Sum_probs=109.8
Q ss_pred cCCceEEEEEEecCc-ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEe--------ee
Q 004764 78 EQRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRG--------LQ 148 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~-~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg--------~~ 148 (732)
.+.+|+++.+...+. ...++++..|++|++.|+++|.|.+..++|.|.+.++++++.-+++...++..- ..
T Consensus 27 ~~~~v~v~~~~~~~~~~~~~r~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~ 106 (199)
T d1jssa_ 27 KAKDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISP 106 (199)
T ss_dssp EETTEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCC
T ss_pred ecCCEEEEEEEcCCCCcEEEEEEEEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcCCCcEEEEEEEcccCCCCcCC
Confidence 568999999988765 567999999999999999999999999999999999999987555543223221 11
Q ss_pred e-eEEEEEEEEEEEEEEEeecCCCCceEEEEEEcc------c---cceeeEEEEEEecCCC-CeeEEEEEEEEecCCCcc
Q 004764 149 R-ALYWHIEARVVLDLQELIHSASDRELYFSMVDG------D---FKKFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFP 217 (732)
Q Consensus 149 ~-il~~~~~arvvLdv~E~~~~~~~rrI~F~~veG------D---fk~f~GsW~Lepl~~g-~gT~LtY~l~V~P~~piP 217 (732)
| ++..... ... ....+....... . ...+.|.|.++|.+.+ .+|+|+|.+.++|++++|
T Consensus 107 RD~v~~~~~--------~~~---~~~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP 175 (199)
T d1jssa_ 107 REFVDFSYT--------VGY---EEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIP 175 (199)
T ss_dssp EEEEEEEEE--------EEE---TTEEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSCCC
T ss_pred cEEEEEEEE--------EEc---CCcEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCCCc
Confidence 1 1111100 000 111121111110 1 1345688999998632 369999999999999999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHH
Q 004764 218 AIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 218 ~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
.++++.++.+.+...+.+||++.
T Consensus 176 ~~lvn~~~~~~~~~~~~~Lr~~l 198 (199)
T d1jssa_ 176 QSAVDTAMASTLANFYSDLRKGL 198 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999863
|
| >d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Atu1531-like domain: Uncharacterized protein Atu1531 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.92 E-value=2.6e-09 Score=97.58 Aligned_cols=128 Identities=12% Similarity=0.153 Sum_probs=86.8
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEe-eCCCeEE
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEIS 421 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e-~~~rrIs 421 (732)
|.....+|+|++|+++||++++|++++|+|+|++.+++.+ +++..+.. .+..| .+.++ +.+ .+++.|.
T Consensus 4 ~~~~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~--~~~~~~~~-~~~~G----~~~~~----i~~~~p~~~i~ 72 (133)
T d2qpva1 4 MQSRIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEA--DGEDWIAK-GGPLG----EVRVN----FAPHNEFGVID 72 (133)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEE--ETTEEEEE-CSSSC----EEEEE----ECCCCSSCBCC
T ss_pred ceEEEEEEEECCCHHHHHHHHhChhhcchhhhccceeEEe--cCCcEEEE-ecCCC----cEEEE----EEEcCCCCEEE
Confidence 3456678999999999999999999999999999988765 33443221 12222 23343 333 4568999
Q ss_pred EEEEecCCcceeEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 422 FEQVEGDFDSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 422 f~~veGdfk~f~G~W~Lep~gdG-~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
|+...|+ ...|.+.|++.++| +|.+.++.. .|. + +.+..+.+ ..+.+...|+.||+.+|.
T Consensus 73 w~~~~~~--~~~g~v~fr~~~~g~gt~v~~~~~-~pp--g-~~~~~~~~-~~~~v~~dL~rlK~l~Ea 133 (133)
T d2qpva1 73 HVVTLPD--GLKVYNALRVTPNGSGTEVSFTLL-RLE--G-MTDEDFEQ-DASAITADLEMLKSLLEA 133 (133)
T ss_dssp EEEECTT--SCEEEEEEEEEEETTEEEEEEEEE-CCT--T-CCHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred EEEecCC--CCEEEEEEEEccCCCeEEEEEEEE-eCC--C-CchHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 9988776 35778877776433 577777664 442 2 33333333 456678889999999884
|
| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Lipid transport domain of Mln64 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.8e-08 Score=97.56 Aligned_cols=166 Identities=8% Similarity=-0.011 Sum_probs=114.5
Q ss_pred cCCceEEEEEEecCcceeEEEEEEEecCHHHHHH-HHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEE
Q 004764 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWN-ALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIE 156 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~rrV~asi~V~AP~e~Vw~-VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~ 156 (732)
.+.+..++.+......+-++++..|++|++.|+. ++.|.+.+++|.|.+.++++|+.-+++...++..-.... .|-..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~k~~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~-~~~vs 114 (214)
T d1em2a_ 36 NEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAA-GGVVS 114 (214)
T ss_dssp CTTCCEEEEEEETTTEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBT-TTTBC
T ss_pred cCCEEEEEEEecCCCcEEEEEEEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccC-CCCCC
Confidence 3456677778888777789999999999999986 778999999999999999999976666543332211100 00000
Q ss_pred EE-EEEEEEEeecCCCCceEEEEEEc--------cc--cceeeEEEEEEecCCC-CeeEEEEEEEEecCCCccHHHHHHH
Q 004764 157 AR-VVLDLQELIHSASDRELYFSMVD--------GD--FKKFEGKWSIKSGTRS-STTTLSYEVNVIPRLNFPAIFLERI 224 (732)
Q Consensus 157 ar-vvLdv~E~~~~~~~rrI~F~~ve--------GD--fk~f~GsW~Lepl~~g-~gT~LtY~l~V~P~~piP~~Lv~~~ 224 (732)
.| .+. +..........-+....+. |- ...+-+.|.+++.+.+ +.|.++|-+.++|++++|.++++.+
T Consensus 115 ~RD~v~-~~~~~~~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~ 193 (214)
T d1em2a_ 115 PRDFVN-VRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQS 193 (214)
T ss_dssp CEEEEE-EEEEEECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHH
T ss_pred CcEEEE-EEEEEEcCCcEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCCCCHHHHHHH
Confidence 00 010 0111110112222222221 11 1455688999997633 5799999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHHhhcc
Q 004764 225 IRSDLPVNLQALACRAERSFG 245 (732)
Q Consensus 225 ir~~L~~~L~ALk~raEr~~~ 245 (732)
+.+.+...+.+||+++.+..|
T Consensus 194 ~~~~~~~~~~~Lrk~~~k~~a 214 (214)
T d1em2a_ 194 LAATMFEFAFHLRQRISELGA 214 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHhcC
Confidence 999999999999999988643
|
| >d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Phosphatidylcholine transfer protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=7e-08 Score=92.54 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=108.8
Q ss_pred cCCceEEEEEEecCcc-eeEEEEEEEe-cCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQRKVHCEVEVVSWRE-RRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~~-rrV~asi~V~-AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
+..+|.|+.+...++. +.++++..|. +|++.++++|.|.+.+++|.|.+.++... .+++...++++-..... +
T Consensus 28 ~~~gv~vy~~~~~~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~--~~~~~~i~y~~~~~p~p---~ 102 (203)
T d1ln1a_ 28 ETSGISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQ--ECNGETVVYWEVKYPFP---M 102 (203)
T ss_dssp EETTEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEE--EETTEEEEEEEECCCTT---S
T ss_pred ecCCEEEEEEecCCCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEE--ccCCcEEEEEEcccccc---c
Confidence 4578999999987764 5699999995 99999999999999999999999875433 33443333433322110 0
Q ss_pred EEE-EEE-E-EEEeecCCCCceEEE---EEEc--------cc--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHH
Q 004764 156 EAR-VVL-D-LQELIHSASDRELYF---SMVD--------GD--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAI 219 (732)
Q Consensus 156 ~ar-vvL-d-v~E~~~~~~~rrI~F---~~ve--------GD--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~ 219 (732)
..| .++ . ..... ..+..+.. ..+. |- ...+.|.|.|++.+ .++|+++|.+.++|++++|.+
T Consensus 103 ~~RD~v~~~~~~~~~--~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~-~~~t~v~~~~~~Dp~G~iP~~ 179 (203)
T d1ln1a_ 103 SNRDYVYLRQRRDLD--MEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDG-KKGSKVFMYYFDNPGGQIPSW 179 (203)
T ss_dssp CCEEEEEEEEEEEEC--STTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECS-SSSEEEEEEEEECCSSCCCHH
T ss_pred CCceEEEEEEEEEcc--CCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecC-CCcEEEEEEEEcCCCCcCHHH
Confidence 001 111 0 01111 11112111 1111 11 25577899999985 578999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Q 004764 220 FLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 220 Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
+++.+.++.++..|.+|++.+.+
T Consensus 180 lvn~~~~~~~~~~~~~l~k~~~~ 202 (203)
T d1ln1a_ 180 LINWAAKNGVPNFLKDMARACQN 202 (203)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
|
| >d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Atu1531-like domain: Uncharacterized protein Atu1531 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.75 E-value=1.8e-08 Score=91.89 Aligned_cols=127 Identities=11% Similarity=0.021 Sum_probs=87.9
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCceE
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDREL 175 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rrI 175 (732)
+..+|+|+||++.||+.++|+++||+|+|.+.++..+ ++++.+....+.. .+ . ..+++. .+++.|
T Consensus 7 ~~~~i~I~~p~~~v~~~~~d~~~~p~w~~~l~~~~~~---~~~~~~~~~~~~G---~~--~----~~i~~~---~p~~~i 71 (133)
T d2qpva1 7 RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEA---DGEDWIAKGGPLG---EV--R----VNFAPH---NEFGVI 71 (133)
T ss_dssp EEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEE---ETTEEEEECSSSC---EE--E----EEECCC---CSSCBC
T ss_pred EEEEEEECCCHHHHHHHHhChhhcchhhhccceeEEe---cCCcEEEEecCCC---cE--E----EEEEEc---CCCCEE
Confidence 5567999999999999999999999999999987664 3455433322111 11 1 222333 357899
Q ss_pred EEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 176 YFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 176 ~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
.|+...|+- ..|.|.+++.+.|++|.+++.+.-.|+ +....+.. ..+.+...|..||+.+|.
T Consensus 72 ~w~~~~~~~--~~g~v~fr~~~~g~gt~v~~~~~~ppg--~~~~~~~~-~~~~v~~dL~rlK~l~Ea 133 (133)
T d2qpva1 72 DHVVTLPDG--LKVYNALRVTPNGSGTEVSFTLLRLEG--MTDEDFEQ-DASAITADLEMLKSLLEA 133 (133)
T ss_dssp CEEEECTTS--CEEEEEEEEEEETTEEEEEEEEECCTT--CCHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCC--CEEEEEEEEccCCCeEEEEEEEEeCCC--CchHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 999988863 357777777766788999988865443 33333333 345667889999998873
|
| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Cholesterol-regulated Start protein 4 (Stard4). species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=4.2e-07 Score=86.78 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=95.5
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeC-CEEEEEEEe---cccee-EEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN-NKVRILQEG---CKGLL-YMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~-g~~rv~q~g---~~gll-~~~~~~rvvLdv~e~~~r 418 (732)
..+.+...|++|++.|+++|.|.+.+++|.|.|.++++++..+ +...+.+.. ...++ ..-+... ......+.
T Consensus 44 ~~~r~~~~i~~~~~~v~~~l~d~~~~~~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~---~~~~~~~~ 120 (199)
T d1jssa_ 44 YLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDF---SYTVGYEE 120 (199)
T ss_dssp EEEEEEEEESSCHHHHHHHHSSSTTHHHHCSSEEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEE---EEEEEETT
T ss_pred EEEEEEEEeCCCHHHHHHHHhChhhhhhcccchheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEE---EEEEEcCC
Confidence 5689999999999999999999999999999999999999854 333222211 11111 0111111 11111122
Q ss_pred eEEEEEEe--------cCCc--ceeEEEEEEEcCCC--eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 419 EISFEQVE--------GDFD--SFQGKWLFEQLGSH--HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 419 rIsf~~ve--------Gdfk--~f~G~W~Lep~gdG--~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
.+.+..+. |-.+ .+.+.|.|+|.++| +|+|+|.+.++|. +.+|.++++.++...+...+..|+++.
T Consensus 121 ~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lr~~l 198 (199)
T d1jssa_ 121 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLR--GMIPQSAVDTAMASTLANFYSDLRKGL 198 (199)
T ss_dssp EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECC--SCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222222 1122 34589999998765 7999999999985 579999999999999999999999864
|
| >d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein MM0500 species: Methanosarcina mazei [TaxId: 2209]
Probab=98.58 E-value=9.8e-07 Score=81.53 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=91.9
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCC-cEEEEE---EeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNL-AISKIL---SRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V-~ssrVL---er~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..+..+..|+||++.||++++|.+++++|++.- -.+.+. -+.++...+......|.. +.....+ +++ .++++
T Consensus 12 ~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~-~~~~g~v-~~i--~~~~r 87 (163)
T d1xuva_ 12 QEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFHGVN-HDV--TEPER 87 (163)
T ss_dssp SEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEEEEE-EEE--ETTTE
T ss_pred ceEEEEEEeCCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEecCCCc-eEEEEEE-EEe--cCCCE
Confidence 468888899999999999999999999998631 112222 223555565555555533 2233332 122 47789
Q ss_pred EEEEEEecC----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 004764 420 ISFEQVEGD----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 490 (732)
Q Consensus 420 Isf~~veGd----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~ 490 (732)
|+|...-+. .....-.|.|++.++|+|+++.+..+... ...+..+...+..+...+|..|++++|+..
T Consensus 88 l~~tw~~~~~~~~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~---~~~~~~~~~g~~~GW~~~L~~L~~~le~~~ 159 (163)
T d1xuva_ 88 IISTFEFEGLPEKGHVILDTARFEALPGDRTKLTSHSVFQTI---EDRDGMLQSGMEEGINDSYERLDELLEKMK 159 (163)
T ss_dssp EEEEEEETTSSSSCCCEEEEEEEEEETTTEEEEEEEEECSSH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCCCCCCcEEEEEEEEEeCCCcEEEEEEEcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 988764322 22456788999998888888877655321 112334455567778899999999999863
|
| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Lipid transport domain of Mln64 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.9e-06 Score=82.89 Aligned_cols=144 Identities=10% Similarity=0.098 Sum_probs=99.3
Q ss_pred EEEEEEEEEcCCHHHHHH-HHhccCcccccCcCCcEEEEEEeeC-CEEEEEEEec--cc-ee-EEEEEEEEEEEEEeeCC
Q 004764 344 RCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSREN-NKVRILQEGC--KG-LL-YMVLHARVVMDICEQHE 417 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~-vLtDyE~yPef~P~V~ssrVLer~~-g~~rv~q~g~--~g-ll-~~~~~~rvvLdv~e~~~ 417 (732)
+.+.++..|++|++.|++ ++.|.+.+++|.|.|.++++++..+ +....+.... .. ++ ..-+..... .....+
T Consensus 52 ~~~k~~~~i~~~~~~v~~~~~~d~e~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~~--~~~~~~ 129 (214)
T d1em2a_ 52 KTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRR--IERRRD 129 (214)
T ss_dssp EEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEEE--EEECSS
T ss_pred EEEEEEEEEeCCHHHHHHHHHhChHHHHHHHHHHhheEEEEEcCCCceEEEEEecccCCCCCCCcEEEEEEE--EEEcCC
Confidence 568899999999999985 7889999999999999999998854 4333322211 11 11 111222111 111222
Q ss_pred C-eEEEEEEe--------cCCc--ceeEEEEEEEcCC--CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 418 Q-EISFEQVE--------GDFD--SFQGKWLFEQLGS--HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 418 r-rIsf~~ve--------Gdfk--~f~G~W~Lep~gd--G~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
. -+....+. |..+ .+.+.|.|++.++ +.|+++|-..++|. +.+|.++++.++...+...+..|++
T Consensus 130 ~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~Lrk 207 (214)
T d1em2a_ 130 RYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLK--GRLPRYLIHQSLAATMFEFAFHLRQ 207 (214)
T ss_dssp EEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECC--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCC--CCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 2 23333332 1122 4458899999654 57999999999985 5799999999999999999999999
Q ss_pred HHHhhhC
Q 004764 485 YVEKREG 491 (732)
Q Consensus 485 rAE~~~~ 491 (732)
++.+..|
T Consensus 208 ~~~k~~a 214 (214)
T d1em2a_ 208 RISELGA 214 (214)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9987643
|
| >d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Phosphatidylcholine transfer protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=5.1e-06 Score=79.15 Aligned_cols=142 Identities=6% Similarity=-0.093 Sum_probs=93.9
Q ss_pred EEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccc--eeEEEEEEEEEEEEEeeCCCeE
Q 004764 344 RCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKG--LLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 344 ~~V~asI~I~-APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~g--ll~~~~~~rvvLdv~e~~~rrI 420 (732)
+.+.+...|+ +|++++++++.|++.+++|.|.+.++.... +++...+++..... +...-+...............+
T Consensus 45 ~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~~~~~~-~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~ 123 (203)
T d1ln1a_ 45 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQE-CNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKI 123 (203)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEE-ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCE
T ss_pred EEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcccceEEEEEc-cCCcEEEEEEcccccccCCceEEEEEEEEEccCCCCeE
Confidence 5688888995 899999999999999999999998754333 34433333321111 1101111110000111111111
Q ss_pred ---EEEEEe--------cCCc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 004764 421 ---SFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 487 (732)
Q Consensus 421 ---sf~~ve--------Gdfk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE 487 (732)
....+. |-.+ .+.|.|.|++.++++|+++|....+|. +.+|.++++.+.++.+...++.|++.+.
T Consensus 124 ~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp~--G~iP~~lvn~~~~~~~~~~~~~l~k~~~ 201 (203)
T d1ln1a_ 124 HVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG--GQIPSWLINWAAKNGVPNFLKDMARACQ 201 (203)
T ss_dssp EEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS--SCCCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred EEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222 1112 567899999999889999999999985 5699999999999999999999999876
Q ss_pred h
Q 004764 488 K 488 (732)
Q Consensus 488 ~ 488 (732)
+
T Consensus 202 ~ 202 (203)
T d1ln1a_ 202 N 202 (203)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Plant pathogenesis-related protein PR10 species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]
Probab=98.41 E-value=6.3e-06 Score=76.53 Aligned_cols=135 Identities=7% Similarity=0.109 Sum_probs=92.0
Q ss_pred EEEEEEEEEcCCHHHHHH-HHhccCcccccCcC-CcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWN-VMTAYETLPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~-vLtDyE~yPef~P~-V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..++.++.+++||+.+|. ++.|+.++|.++|. ++++++++.++ |.++.+.....+-. .....+ ++......+.
T Consensus 3 ~~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~-~~~kEr--l~~iD~~~~~ 79 (147)
T d1txca1 3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKT-SFVLQK--VDAIDEANLG 79 (147)
T ss_dssp EEEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEE-EEEEEE--EEEEEGGGTE
T ss_pred eEEEEEEeccCCHHHHHHhhhcccccCccccccccccceeecCCCCcceEEEEEEcCCCcc-eEEEEE--EEEEccCCcE
Confidence 468899999999999995 77799999999999 67778887654 34555444333321 223333 3333345689
Q ss_pred EEEEEEecCC-----cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHH
Q 004764 420 ISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAI 482 (732)
Q Consensus 420 Isf~~veGdf-----k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~AL 482 (732)
+.|+.++|+. ..+.-.-.+.+.++|+|.++|.+.|++.++..+|+..++. .......+++++
T Consensus 80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~-~k~~~~~~~Kav 146 (147)
T d1txca1 80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDD-ALAKGAGFFKAI 146 (147)
T ss_dssp EEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHH-HHHHHHHHHHHH
T ss_pred EEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHH-HHHHHhhhheec
Confidence 9999999863 2445556788888888999999999987666666544433 233334444443
|
| >d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein SA2116 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.28 E-value=2.6e-05 Score=71.84 Aligned_cols=143 Identities=13% Similarity=0.049 Sum_probs=90.0
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
...|+.+..|+||+++||++|+|.+.++.|++. +..++.--+.++..++......+.. ..+...+ +++ .+++
T Consensus 6 ~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g~v-~e~--~p~~ 81 (164)
T d2il5a1 6 HVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKV-NVIEGIY-ESL--VMDE 81 (164)
T ss_dssp EEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCE-EEEEEEE-EEE--ETTT
T ss_pred cEEEEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEEEeecccCceEEEEEecCCcce-EEEEEEE-EEE--cCCC
Confidence 467888999999999999999999999999863 2223332234566565555444432 2333332 222 4778
Q ss_pred eEEEEEEe-c-CCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccc-hH------HHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 419 EISFEQVE-G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLL-SE------AIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 419 rIsf~~ve-G-dfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~L-p~------~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
+|+|...- + +-......+.+.+.++|+|+|++....-+.....+ .. .-....+..+...+|+.|++++|..
T Consensus 82 ~i~~t~~~~~~~~~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE~g 161 (164)
T d2il5a1 82 YVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETS 161 (164)
T ss_dssp EEEEEESCC--CCCCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEeccCCCCCceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99987522 1 11233455666666778899999876544221111 11 1134456788999999999999864
|
| >d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Major allergen api g 1 species: Celery (Apium graveolens) [TaxId: 4045]
Probab=98.27 E-value=1.2e-05 Score=75.13 Aligned_cols=138 Identities=14% Similarity=0.266 Sum_probs=95.8
Q ss_pred EEEEEEEEEcCCHHHHHHHH-hccCc-ccccCcC-CcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVM-TAYET-LPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vL-tDyE~-yPef~P~-V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.+++|++.+|+++ .|..+ +|..+|. +++++| +.++ |.++.+.-...+- ...+..|+ +......+
T Consensus 3 ~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGdG~~GsIr~~~~~~~~~-~~~~Kerv--e~iD~~~~ 78 (153)
T d2bk0a1 3 QTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGP-ITTMTLRI--DGVNKEAL 78 (153)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESSSSTTCEEEEECCTTSS-CCEEEEEE--EEEETTTT
T ss_pred eEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECCCCCCeEEEEEEecCcc-ceeeEEEE--EEEecCcc
Confidence 56888999999999999976 68887 5999996 677774 6543 4456555443332 23344443 33335668
Q ss_pred eEEEEEEecC-C----cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 419 EISFEQVEGD-F----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 419 rIsf~~veGd-f----k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
.+.|+.++|+ + +.+...+.+.+.++|+|.+++.+.+++.++...++--+ +.....+..+++++.++.
T Consensus 79 ~~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~-k~~~e~~~~~~K~iE~YL 150 (153)
T d2bk0a1 79 TFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENI-KYANEQNTALFKALEAYL 150 (153)
T ss_dssp EEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999997 2 47799999999998899999999999876443333222 233344556667766654
|
| >d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein NE0264 species: Nitrosomonas europaea [TaxId: 915]
Probab=98.24 E-value=9.1e-06 Score=75.09 Aligned_cols=139 Identities=10% Similarity=0.091 Sum_probs=87.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 345 CVVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 345 ~V~asI~I~APpE~VW~vLtDyE~yPef~P~----V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
.+..+..|+||+++||++++|-+.+.+|+.. +..+++--+.|+..++.....+|.. .....++ +++ .++++|
T Consensus 6 ~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v-~ei--~p~~rl 81 (165)
T d1xfsa_ 6 DLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRVDLRPGGEFYTVMQDPEGNK-FPNSGCF-LEV--TDEKRL 81 (165)
T ss_dssp EEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEECCSTTCEEEEEEECTTCCE-EEEEEEE-EEE--ETTTEE
T ss_pred EEEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeecccceeCceEEEEEECCCCce-eeEEEEE-EEe--cCCcEE
Confidence 4677889999999999999999999999753 2233333334666665555544532 2333332 222 477899
Q ss_pred EEEEEe----------------cCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 421 SFEQVE----------------GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 421 sf~~ve----------------Gdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
.|...- .........|.|++.++| |+|+.+...... .-........+...-..+|..|++
T Consensus 82 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~g-T~lt~~~~~~~~---~~~~~~~~~g~~~GW~~~l~~L~~ 157 (165)
T d1xfsa_ 82 IWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSSG-TRYTACAMHNTP---GQRKLHEEMGFHEGWGTTITQLEE 157 (165)
T ss_dssp EEESSEEGGGEECCC-----------CCEEEEEEEECSSS-EEEEEEEECSSH---HHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred EEEEeecccccccccccccccCCCCccEEEEEEEEEcCCc-EEEEEEEEcCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986321 112244678999997655 999887653211 012222333356788899999999
Q ss_pred HHHhhhC
Q 004764 485 YVEKREG 491 (732)
Q Consensus 485 rAE~~~~ 491 (732)
++|+..+
T Consensus 158 ~le~~~a 164 (165)
T d1xfsa_ 158 LLKQEKA 164 (165)
T ss_dssp HHHHHSC
T ss_pred HHHhcCC
Confidence 9997643
|
| >d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Star-related lipid transfer protein 13 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=5.7e-06 Score=79.11 Aligned_cols=153 Identities=10% Similarity=-0.047 Sum_probs=97.1
Q ss_pred cCCceEEEEEEecCc--ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEE
Q 004764 78 EQRKVHCEVEVVSWR--ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHI 155 (732)
Q Consensus 78 ~e~~v~v~v~~v~~~--~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~ 155 (732)
+..||+|+.+....+ .+-++++..|+|+++.|+..+.+. -.+|.+.+.++++|+.-+++...++.+-.... ..
T Consensus 26 ~~~gi~V~~kk~~~gs~~~~~k~~~~i~a~~~~vl~~~l~~--r~~Wd~~~~~~~~le~~~~~~~i~y~~~~~p~---pv 100 (197)
T d2psoa1 26 STDNTDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRE--RHLWDEDFVQWKVVETLDRQTEIYQYVLNSMA---PH 100 (197)
T ss_dssp CSSSCEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHC--GGGTCTTBCCCEEEEEEETTEEEEEEEECCSS---SC
T ss_pred cCCCeEEEEEecCCCCCeEEEEEEEEEcCCHHHHHHHHHHh--HHHHhhhhheEEEEEEcCCCCEEEEEEccCCC---cc
Confidence 568899988886443 457899999999999988655432 47899999999999875555433333321110 00
Q ss_pred EEE-EEEEEEEeecCCCCce--EEEEEEcc-------c--cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHH
Q 004764 156 EAR-VVLDLQELIHSASDRE--LYFSMVDG-------D--FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLER 223 (732)
Q Consensus 156 ~ar-vvLdv~E~~~~~~~rr--I~F~~veG-------D--fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~ 223 (732)
..| .+.-...... ...+. |...-++. - .+.+.|.|.++|.+ .+.|+|+|.+.++|++.+|.++++.
T Consensus 101 s~RD~v~~~~~~~~-~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~Dp~G~iP~W~~n~ 178 (197)
T d2psoa1 101 PSRDFVVLRTWKTD-LPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG-SGKSRLTHICRIDLKGHSPEWYSKG 178 (197)
T ss_dssp CCEEEEEEEEEESC-CGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECS-TTCEEEEEEEEECCSSSCTTTTTTH
T ss_pred cceeEEEEEEEEEe-CCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECC-CCcEEEEEEEEECCCCcCchhHHhh
Confidence 111 1110011110 11222 22222221 1 26678899999986 5679999999999999999999998
Q ss_pred HHHhCHHHHHHHHHH
Q 004764 224 IIRSDLPVNLQALAC 238 (732)
Q Consensus 224 ~ir~~L~~~L~ALk~ 238 (732)
+ .+.+...+..||+
T Consensus 179 ~-~~~~~~~~~~lr~ 192 (197)
T d2psoa1 179 F-GHLCAAEVARIRN 192 (197)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHH
Confidence 6 5555555555665
|
| >d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Plant pathogenesis-related protein PR10 species: Yellow lupine (Lupinus luteus) [TaxId: 3873]
Probab=98.13 E-value=4.3e-05 Score=71.63 Aligned_cols=141 Identities=9% Similarity=0.099 Sum_probs=98.8
Q ss_pred EEEEEEEEEcCCHHHHHHHH-hccCcc-cccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVM-TAYETL-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vL-tDyE~y-Pef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..++.++.+++|++.+|.++ .|..+. |.+.+.++++++++.++ |.++.+.-+..+-. .....| ++......+.
T Consensus 3 ~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~-~~~Ker--ie~vD~e~~~ 79 (157)
T d1xdfa1 3 FTFEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGET-KYVLHK--IEAVDEANLR 79 (157)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEE-EEEEEE--EEEEEGGGTE
T ss_pred eEEEEEEeccCCHHHHHHHHhhchhhccccchhheecceeecCCCCCCcEEEEEEcCCCcc-EEEEEE--EEEEechhcE
Confidence 46889999999999999865 799886 88888899999998864 34565554444421 223333 3333356689
Q ss_pred EEEEEEecC-C----cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 420 ISFEQVEGD-F----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 420 Isf~~veGd-f----k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+.|..++|+ + +.+...-.|.+.++|+|.+++.+.+++.++..+++.-+ +.....+..+++++.+++-.
T Consensus 80 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~i-k~~~e~~~~~~K~iEaYLla 152 (157)
T d1xdfa1 80 YNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEG-KAAKARGDAFFKAIENYLSA 152 (157)
T ss_dssp EEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHH-HHHHHHHHTTTHHHHHHHHT
T ss_pred EEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 999999997 2 36677778999888899999999999876544443333 23344555666777666543
|
| >d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Major tree pollen allergen species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]
Probab=98.09 E-value=3.9e-05 Score=71.99 Aligned_cols=142 Identities=11% Similarity=0.155 Sum_probs=98.8
Q ss_pred EEEEEEEEEcCCHHHHHHHH-hccCc-ccccCcC-CcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVM-TAYET-LPEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vL-tDyE~-yPef~P~-V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.+++|++.+|+++ .|+.+ +|.++|. ++++++++.++ |.++.+.....+-. .....| ++......+
T Consensus 3 ~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~-~~~Ker--ve~iD~~~~ 79 (159)
T d1fm4a_ 3 FNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPF-KYVKDR--VDEVDHTNF 79 (159)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSS-SEEEEE--EEEEETTTT
T ss_pred eEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCc-eEEEEE--EEEEccccc
Confidence 46888999999999999975 69888 5999999 57778887764 34555443332311 223333 333445668
Q ss_pred eEEEEEEecC-----CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 419 EISFEQVEGD-----FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 419 rIsf~~veGd-----fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.+.|+.++|+ ++.+...-.|.+.++|+|.+++.+++++.++..+++--+ +........+++++.+++-..
T Consensus 80 ~~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~-k~~ke~~~~~~K~iE~YLlan 154 (159)
T d1fm4a_ 80 KYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQV-KASKEMGETLLRAVESYLLAH 154 (159)
T ss_dssp EEEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTT-HHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhhC
Confidence 9999999997 236778889999988999999999999865443432222 334445667778887776554
|
| >d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Major tree pollen allergen species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]
Probab=98.07 E-value=6.8e-05 Score=70.28 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=97.4
Q ss_pred EEEEEEEEEcCCHHHHHHHH-hccCcc-cccCcC-CcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCC
Q 004764 344 RCVVASITVKAPVSEVWNVM-TAYETL-PEIVPN-LAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQ 418 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vL-tDyE~y-Pef~P~-V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~r 418 (732)
..++.++.+++|++.+|.++ .|+.+. |.++|. ++++++++.++ |.++.+.-+..+-. .....| ++...+..+
T Consensus 3 ~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~-~~~KEr--ie~iD~~~~ 79 (159)
T d1e09a_ 3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQY-GYVKHK--IDSIDKENY 79 (159)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSC-EEEEEE--EEEEETTTT
T ss_pred eEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCc-EEEEEE--EEEEccccc
Confidence 56888999999999999985 799875 999999 57778887764 35666555544422 233344 233335568
Q ss_pred eEEEEEEecCCc-----ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 004764 419 EISFEQVEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 489 (732)
Q Consensus 419 rIsf~~veGdfk-----~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~ 489 (732)
.+.|+.++|++- .+.-.-.+.+.++++|.+++++++++.++..+++. -.....+.+..+++++.+++-..
T Consensus 80 ~~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e-~~~~~~e~~~~~~K~iEayLlan 154 (159)
T d1e09a_ 80 SYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEE-HVKAGKEKASNLFKLIETYLKGH 154 (159)
T ss_dssp EEEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999852 33444456666777899999999998654434322 22344556677777777776544
|
| >d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Plant pathogenesis-related protein PR10 species: Yellow lupine (Lupinus luteus) [TaxId: 3873]
Probab=98.06 E-value=6.7e-05 Score=70.16 Aligned_cols=140 Identities=10% Similarity=0.145 Sum_probs=99.9
Q ss_pred EEEEEEEEEcCCHHHHHHHH-hccCcc-cccCcCCcEEEEEEeeC--CEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 344 RCVVASITVKAPVSEVWNVM-TAYETL-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vL-tDyE~y-Pef~P~V~ssrVLer~~--g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
..++.++..++||+.+|.++ .|..++ |.++|.++++++++.++ |.++.+.-+..+- ......| ++......+.
T Consensus 3 ~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGdGg~GsIk~~~~~~~~~-~~~~Ker--ie~iD~en~~ 79 (155)
T d1icxa_ 3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHDGH-TSFVLHK--LDAIDEANLT 79 (155)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSSTTCEEEEEEESSSS-EEEEEEE--EEEEEGGGTE
T ss_pred eEEEEeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecCCCccceEEEEEeccCCc-eEEEEEE--EEEEcccccE
Confidence 46889999999999999985 588886 89999999999998874 3455554444332 2233343 3334456689
Q ss_pred EEEEEEecCC-----cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 420 ISFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 420 Isf~~veGdf-----k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
+.|+.++|+. ..+.-.-.+.+.++|+|.+++.+.+++.++ .+++.-... ..+.+..+++++.+++-+
T Consensus 80 ~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~-~~~e~~~~~-~ke~~~~~fK~iE~YLla 151 (155)
T d1icxa_ 80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD-VLSETVRDQ-AKFKGLGLFKAIEGYVLA 151 (155)
T ss_dssp EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSS-SCCHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCC-CCChhhHHH-HHHHHHHHHHHHHHHHhh
Confidence 9999999984 255667788888888899999999998764 355433322 345556777777777644
|
| >d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein CV1439 species: Chromobacterium violaceum [TaxId: 536]
Probab=98.03 E-value=2.8e-05 Score=69.74 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=78.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCc-EEEEE---EeeCCEEEEEEEe-ccceeEEEEEEEEEEEEEeeCCCeE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA-ISKIL---SRENNKVRILQEG-CKGLLYMVLHARVVMDICEQHEQEI 420 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~-ssrVL---er~~g~~rv~q~g-~~gll~~~~~~rvvLdv~e~~~rrI 420 (732)
|+.+.+|+||+++||++++|.+.+.+|++.-. ...+. -+.|+..+..... ..|.. .....++ +++ .++++|
T Consensus 4 i~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~-~~~~g~v-~~~--~p~~~i 79 (143)
T d1z94a1 4 IRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQK-HAFGGRY-LEL--VPGERI 79 (143)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCE-EEEEEEE-EEE--ETTTEE
T ss_pred EEEEEEECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcE-EEEEEEE-EEe--cCCeEE
Confidence 45566899999999999999999999986421 12222 2235555554432 23322 2233332 122 477899
Q ss_pred EEEEEecC--C-cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 004764 421 SFEQVEGD--F-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 488 (732)
Q Consensus 421 sf~~veGd--f-k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~ 488 (732)
.|.-...+ . ....-.|+|++.++| |+|++...--+. ......+.......|..|++++|+
T Consensus 80 ~~t~~~~~~~~~~~~~v~~~l~~~~~g-T~lt~~~~~~~~-------~~~~~~~~~GW~~~l~~L~~~lE~ 142 (143)
T d1z94a1 80 RYTDRFDDAGLPGDMITTITLAPLSCG-ADLSIVQEGIPD-------AIPPENCYLGWQQSLKQLAALVEP 142 (143)
T ss_dssp EEEEEESCCC---CEEEEEEEEEETTE-EEEEEEEECCCT-------TSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEeccCCCCCCcEEEEEEEEEcCCC-EEEEEEEEcCCC-------hhHHHHHHHHHHHHHHHHHHHHcC
Confidence 98854321 1 244677899998764 888876542221 111223456778888889888774
|
| >d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Major allergen api g 1 species: Celery (Apium graveolens) [TaxId: 4045]
Probab=97.94 E-value=0.00018 Score=66.94 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=91.3
Q ss_pred ceeEEEEEEEecCHHHHHHHH-hCccc-cccccccc-eEEEEEecC-CCCeeEEEEEeeee-eEEEEEEEEEEEEEEEee
Q 004764 93 ERRIKAEMLVNADVDSVWNAL-TDYER-LADFVPNL-ACSGRIPCP-YPGRIWLEQRGLQR-ALYWHIEARVVLDLQELI 167 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VL-TDYEr-lpeFiP~v-~~SeVLe~~-~ggrirv~Qvg~~~-il~~~~~arvvLdv~E~~ 167 (732)
...+..++.+++|++++|.++ .|..+ +|..+|.+ ++++ ++-. +.|.++.|.-+... ..++. .++.+..
T Consensus 2 v~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~sve-veGdG~~GsIr~~~~~~~~~~~~~K------erve~iD 74 (153)
T d2bk0a1 2 VQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPITTMT------LRIDGVN 74 (153)
T ss_dssp EEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEE-EESSSSTTCEEEEECCTTSSCCEEE------EEEEEEE
T ss_pred ceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEE-EECCCCCCeEEEEEEecCccceeeE------EEEEEEe
Confidence 346788999999999999987 58887 59999975 5555 4532 22466766554332 22221 1112222
Q ss_pred cCCCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC--ccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 168 HSASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN--FPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 168 ~~~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p--iP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
...+.+.|++++|| ++.|...+.+.+.+ +++|.+.+.++.++... .|+--++.. +.....++++|-+++
T Consensus 75 --~~~~~~~y~viEGd~l~~~y~s~~~~~~~~~~~-~ggsv~k~t~eYe~~~~~~~~~e~~k~~-~e~~~~~~K~iE~YL 150 (153)
T d2bk0a1 75 --KEALTFDYSVIDGDILLGFIESIENHVVLVPTA-DGGSICKTTAIFHTKGDAVVPEENIKYA-NEQNTALFKALEAYL 150 (153)
T ss_dssp --TTTTEEEEEEEESGGGTTTEEEEEEEEEEEECT-TSCEEEEEEEEEEESTTCCCCHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred --cCccEEEEEEEecccccccEEEEEEEEEEecCC-CCCeEEEEEEEEEECCCCCCCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 47899999999998 48889999999975 46788888888877544 344333333 333556666666654
Q ss_pred H
Q 004764 241 E 241 (732)
Q Consensus 241 E 241 (732)
-
T Consensus 151 l 151 (153)
T d2bk0a1 151 I 151 (153)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein BH1534 species: Bacillus halodurans [TaxId: 86665]
Probab=97.90 E-value=5.2e-05 Score=67.74 Aligned_cols=128 Identities=15% Similarity=0.195 Sum_probs=77.0
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
-.|+.++.|+||++.||++|+|.+.+..|++.... ....++ ++...+..+. ...++ +++ .++++|+|+
T Consensus 5 p~i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~~~---~~~~g~--~~~~~~~~~~----~~g~v-~~~--~~~~~l~~~ 72 (138)
T d1xn5a_ 5 PDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMENDL---KAETGH--HFHLQSPFGP----SPCQV-TDV--ERPIKLSFT 72 (138)
T ss_dssp CCEEEEEEESSCHHHHHHHTTSHHHHHTTSCCBCC---CSCTTC--EEEEECSSCE----EEEEE-EEE--ETTTEEEEE
T ss_pred CeEEEEEEECCCHHHHHHHHcCHHHhceEccCCcc---ccccee--eEEecCCccc----eeEEE-EEE--eCCcEEEEE
Confidence 34889999999999999999999999999986421 111222 2222222221 12221 122 477999998
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCc-----cchHHHHHHHHHhhHHHHH-HHHHHHHH
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNS-----LLSEAIMEEVIYEDLPSNL-CAIRDYVE 487 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~-----~Lp~~lv~r~lr~~l~~~L-~ALK~rAE 487 (732)
.- +......|+|++.++ +|+|++...--..... ......+...++.+-...| +.||+++|
T Consensus 73 ~~---~~~~~v~~~l~~~~~-gT~lt~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~vE 138 (138)
T d1xn5a_ 73 WD---TDGWSVTFHLKEEEN-GTIFTIVHSGWKQGDTKVEKAGAESAVVHERMDRGWHDLVNERLRQIVE 138 (138)
T ss_dssp ET---TTTEEEEEEEEECSS-SEEEEEEEECCCSTTCBCSSSSSBHHHHHHHHHHHHHHHTTTTTHHHHC
T ss_pred ec---CCCeEEEEEEEEcCC-cEEEEEEEecCCCchhhhhhhcccchHHHHHHHHhHHHHHHHHHHHHhC
Confidence 63 234577899999775 5999887543211100 0122334445555555555 46777664
|
| >d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Plant pathogenesis-related protein PR10 species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]
Probab=97.87 E-value=0.00041 Score=63.93 Aligned_cols=133 Identities=9% Similarity=0.072 Sum_probs=84.8
Q ss_pred eeEEEEEEEecCHHHHHH-HHhCcccccccccc-ceEEEEEecC-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 94 RRIKAEMLVNADVDSVWN-ALTDYERLADFVPN-LACSGRIPCP-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~-VLTDYErlpeFiP~-v~~SeVLe~~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
..+..++.+++||+++|. .+.|+.+++.++|. ++++++++.. +.|.+|.+.-+...-..+ +..++.... .
T Consensus 3 ~~~~~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~-----~kErl~~iD--~ 75 (147)
T d1txca1 3 FVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSF-----VLQKVDAID--E 75 (147)
T ss_dssp EEEEEEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEE-----EEEEEEEEE--G
T ss_pred eEEEEEEeccCCHHHHHHhhhcccccCccccccccccceeecCCCCcceEEEEEEcCCCcceE-----EEEEEEEEc--c
Confidence 357788999999999995 66699999999999 5556665532 123566554432211111 111122222 3
Q ss_pred CCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEec--CCCccHHHHHHHHHhCHHHHHHH
Q 004764 171 SDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIP--RLNFPAIFLERIIRSDLPVNLQA 235 (732)
Q Consensus 171 ~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P--~~piP~~Lv~~~ir~~L~~~L~A 235 (732)
..+.++|+.++|| ++.+.-.-.+.+.+ +++|.+.|.+...+ +.++|..-++.. +.....+++|
T Consensus 76 ~~~~~~y~iiEGd~l~~~~~s~~~~~~~~~~~-~ggs~vkw~~~y~~~~~~~~~ee~~k~~-k~~~~~~~Ka 145 (147)
T d1txca1 76 ANLGYDYSIVGGTGLPESLEKLSFETKVVAGS-GGGSISKVTLKFHTKGDAPLSDAVRDDA-LAKGAGFFKA 145 (147)
T ss_dssp GGTEEEEEEEESTTSCTTEEEEEEEEEEEECS-TTCEEEEEEEEEEETTSCCCCHHHHHHH-HHHHHHHHHH
T ss_pred CCcEEEEEEEccCccccceEEEEEEEEEecCC-CCCcEEEEEEEEEECCCCCCCHHHHHHH-HHHHhhhhee
Confidence 6789999999997 36666777778764 56899999999876 555666554443 3333444444
|
| >d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein MM0500 species: Methanosarcina mazei [TaxId: 2209]
Probab=97.84 E-value=0.00028 Score=64.51 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=83.1
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCcccccccccc-c--eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPN-L--ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~-v--~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
...|..+..|+||++.||+++||-+++++|+++ - ..+..++.+.+|+....-.....-. +... -.+.+..
T Consensus 11 ~~~i~i~r~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~-~~~~----g~v~~i~-- 83 (163)
T d1xuva_ 11 KQEIIITREFDAPRELVFKAFTDPDLYTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNE-YAFH----GVNHDVT-- 83 (163)
T ss_dssp CSEEEEEEEESSCHHHHHHHHHCHHHHTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCE-EEEE----EEEEEEE--
T ss_pred CceEEEEEEeCCCHHHHHHHHcChHHhhhccCCCCccceeeeeeceeCceEEEEEEecCCCc-eEEE----EEEEEec--
Confidence 346888899999999999999999999999864 1 1222333334555433322211110 1111 1122332
Q ss_pred CCCceEEEEEEccc----cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 170 ASDRELYFSMVDGD----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 170 ~~~rrI~F~~veGD----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
++++|.|+..-++ -....-.|.|++.+ +++|.++.+-.... ...........+......+|..|++.+|++.
T Consensus 84 -~~~rl~~tw~~~~~~~~~~~~~v~~~~e~~~-~g~t~~~~~~~~~~-~~~~~~~~~~g~~~GW~~~L~~L~~~le~~~ 159 (163)
T d1xuva_ 84 -EPERIISTFEFEGLPEKGHVILDTARFEALP-GDRTKLTSHSVFQT-IEDRDGMLQSGMEEGINDSYERLDELLEKMK 159 (163)
T ss_dssp -TTTEEEEEEEETTSSSSCCCEEEEEEEEEET-TTEEEEEEEEECSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEEeccCCCCCCCcEEEEEEEEEeC-CCcEEEEEEEcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688988765221 23445678899864 56677776544311 1111122333445667788999999999863
|
| >d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Star-related lipid transfer protein 13 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00011 Score=70.01 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=92.7
Q ss_pred cccccccccccCCCccccceeeeeeccCccccCceeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCC
Q 004764 308 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 387 (732)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~Ev~~rr~D~l~e~~g~~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g 387 (732)
++|...+..=. .+|+.++..+ +...+.+.+...|+|++++|+..+.+ .-+.|.+.+.++++++..++
T Consensus 19 ~GW~~~~~~~g-------i~V~~kk~~~----gs~~~~~k~~~~i~a~~~~vl~~~l~--~r~~Wd~~~~~~~~le~~~~ 85 (197)
T d2psoa1 19 KGWVTCSSTDN-------TDLAFKKVGD----GNPLKLWKASVEVEAPPSVVLNRVLR--ERHLWDEDFVQWKVVETLDR 85 (197)
T ss_dssp CSCEEECCSSS-------CEEEEECCCS----SCCCCEEEEEEEESSCHHHHHHHHHH--CGGGTCTTBCCCEEEEEEET
T ss_pred CCceEEecCCC-------eEEEEEecCC----CCCeEEEEEEEEEcCCHHHHHHHHHH--hHHHHhhhhheEEEEEEcCC
Confidence 46877765321 1456666421 22236788899999999999865543 25789999999999987543
Q ss_pred EE-EEEEEeccceeEEEEEEEEEEE-EEee-CCC--eEEEEEEecC-------Cc--ceeEEEEEEEcCCCeEEEEEEEE
Q 004764 388 KV-RILQEGCKGLLYMVLHARVVMD-ICEQ-HEQ--EISFEQVEGD-------FD--SFQGKWLFEQLGSHHTLLKYSVE 453 (732)
Q Consensus 388 ~~-rv~q~g~~gll~~~~~~rvvLd-v~e~-~~r--rIsf~~veGd-------fk--~f~G~W~Lep~gdG~TrVty~v~ 453 (732)
.. .+++.. .......-..-+.+. .... .+. .+....++.+ ++ .+.|.|.++|.+++.|+|+|.+.
T Consensus 86 ~~~i~y~~~-~~p~pvs~RD~v~~~~~~~~~~~~~~~i~~~Sv~~~~~p~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~ 164 (197)
T d2psoa1 86 QTEIYQYVL-NSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICR 164 (197)
T ss_dssp TEEEEEEEE-CCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEE
T ss_pred CCEEEEEEc-cCCCcccceeEEEEEEEEEeCCCCEEEEEEEeccccCCCCCCcEEEEEEeccEEEEECCCCcEEEEEEEE
Confidence 33 222221 111001000001111 1111 122 2333333322 11 56788999999999999999999
Q ss_pred EEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 004764 454 SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 484 (732)
Q Consensus 454 ~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~ 484 (732)
++|. +.+|.++++.+ ...+...+..+|+
T Consensus 165 ~Dp~--G~iP~W~~n~~-~~~~~~~~~~lr~ 192 (197)
T d2psoa1 165 IDLK--GHSPEWYSKGF-GHLCAAEVARIRN 192 (197)
T ss_dssp ECCS--SSCTTTTTTHH-HHHHHHHHHHHHH
T ss_pred ECCC--CcCchhHHhhh-HHHHHHHHHHHHH
Confidence 9985 56888777764 4444444444444
|
| >d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein BC4709 species: Bacillus cereus [TaxId: 1396]
Probab=97.81 E-value=3.1e-05 Score=70.40 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=82.5
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEE
Q 004764 343 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 422 (732)
Q Consensus 343 ~~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf 422 (732)
+-.|..++.|+||+++||++|+|.+.+..|++... +--+.++...+ .+..+.. ..++ +++ .++++|+|
T Consensus 7 ~~~i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~~~---~~~~~G~~~~~--~~~~g~~----~g~v-~~~--~p~~~l~~ 74 (143)
T d1xn6a_ 7 LNDIKQTIVFNASIQKVWSVVSTAEGIASWFMPND---FVLEVGHEFHV--QSPFGPS----PCKV-LEI--DEPNHLSF 74 (143)
T ss_dssp CCCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBC---CCCCTTCEECB--CCTTCCC----CEEE-EEE--ETTTEEEE
T ss_pred CCeEEEEEEECCCHHHHHHHhcChHHhceEeeccC---cccccCceEEE--eccccce----eEEE-EEE--eCCcEEEE
Confidence 34589999999999999999999999999998642 21223443322 2222322 1221 122 47789999
Q ss_pred EEEecCCcceeEEEEEEEcCCCeEEEEEEEE-EEeccC----ccchHHHHHHHHHhhHHHHH-HHHHHHHHh
Q 004764 423 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVE-SKMQKN----SLLSEAIMEEVIYEDLPSNL-CAIRDYVEK 488 (732)
Q Consensus 423 ~~veGdfk~f~G~W~Lep~gdG~TrVty~v~-~ep~~d----~~Lp~~lv~r~lr~~l~~~L-~ALK~rAE~ 488 (732)
+--. ....-.|+|++.++|+|+|++... +.+... ...........+..+-...| +.||+++|.
T Consensus 75 tw~~---~~~~v~~~l~~~~~G~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lEG 143 (143)
T d1xn6a_ 75 SWDT---DGWVVSFDLKDLGDNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVEG 143 (143)
T ss_dssp EETT---TTEEEEEEEEEEETTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHHC
T ss_pred EEcC---CCcEEEEEEEEcCCCcEEEEEEEeCCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHhCC
Confidence 7522 234678999998888999998754 222110 00112334455566666666 579998873
|
| >d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein NE0264 species: Nitrosomonas europaea [TaxId: 915]
Probab=97.78 E-value=0.00021 Score=65.55 Aligned_cols=140 Identities=11% Similarity=0.069 Sum_probs=83.2
Q ss_pred eeEEEEEEEecCHHHHHHHHhCcccccccccc----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPN----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..+..+..|+||++.||+++||-+.+.+|+.. +..++. +.+.||+.+..-.....-. +... ..++ +..
T Consensus 5 ~~l~i~r~i~ap~e~Vw~a~tdpe~~~~W~~p~~~~~~~~~~-d~~~GG~~~~~~~~~~g~~-~~~~-g~v~---ei~-- 76 (165)
T d1xfsa_ 5 LDLMLKRELAVPVNLVWRGLTEPELLKKWFVPKPWSISDCRV-DLRPGGEFYTVMQDPEGNK-FPNS-GCFL---EVT-- 76 (165)
T ss_dssp TEEEEEEEESSCHHHHHHHHHCHHHHTTTSSCTTCEEEEEEE-CCSTTCEEEEEEECTTCCE-EEEE-EEEE---EEE--
T ss_pred cEEEEEEEEcCCHHHHHHHHcCHHHHhhcCCCCCccceeecc-cceeCceEEEEEECCCCce-eeEE-EEEE---Eec--
Confidence 45788889999999999999999999999753 233333 4456776544322211111 1111 1122 332
Q ss_pred CCCceEEEEEEc------------c----ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHH
Q 004764 170 ASDRELYFSMVD------------G----DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNL 233 (732)
Q Consensus 170 ~~~rrI~F~~ve------------G----Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L 233 (732)
++++|.|+..- + ........|.|++. +++|+|+......+ ...........+...-...|
T Consensus 77 -p~~rl~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~gT~lt~~~~~~~-~~~~~~~~~~g~~~GW~~~l 152 (165)
T d1xfsa_ 77 -DEKRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPT--SSGTRYTACAMHNT-PGQRKLHEEMGFHEGWGTTI 152 (165)
T ss_dssp -TTTEEEEESSEEGGGEECCC-----------CCEEEEEEEEC--SSSEEEEEEEECSS-HHHHHHHHTTTHHHHHHHHH
T ss_pred -CCcEEEEEEeecccccccccccccccCCCCccEEEEEEEEEc--CCcEEEEEEEEcCC-HHHHHHHHHHHHHHHHHHHH
Confidence 36888886421 1 12344578999984 57899987654211 11111222233556677899
Q ss_pred HHHHHHHHhhcc
Q 004764 234 QALACRAERSFG 245 (732)
Q Consensus 234 ~ALk~raEr~~~ 245 (732)
..|++.+|+.++
T Consensus 153 ~~L~~~le~~~a 164 (165)
T d1xfsa_ 153 TQLEELLKQEKA 164 (165)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhcCC
Confidence 999999998643
|
| >d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Plant pathogenesis-related protein PR10 species: Yellow lupine (Lupinus luteus) [TaxId: 3873]
Probab=97.71 E-value=0.00055 Score=63.74 Aligned_cols=139 Identities=10% Similarity=0.069 Sum_probs=93.0
Q ss_pred eeEEEEEEEecCHHHHHHHH-hCcccc-ccccccceEEEEEecCCCC--eeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNAL-TDYERL-ADFVPNLACSGRIPCPYPG--RIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VL-TDYErl-peFiP~v~~SeVLe~~~gg--rirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..+..++..++||+++|.++ .|..++ |.++|.++++++++- +|+ .++.+.-+...-.... . .++....
T Consensus 3 ~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eG-dGg~GsIk~~~~~~~~~~~~~---K--erie~iD-- 74 (155)
T d1icxa_ 3 FAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEG-NGGPGTIKKIIAIHDGHTSFV---L--HKLDAID-- 74 (155)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEES-SSSTTCEEEEEEESSSSEEEE---E--EEEEEEE--
T ss_pred eEEEEeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecC-CCccceEEEEEeccCCceEEE---E--EEEEEEc--
Confidence 35778899999999999986 588887 899999999999875 333 4555544332211111 1 1112222
Q ss_pred CCCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCCC-ccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 170 ASDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLN-FPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 170 ~~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~p-iP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
...+.++|++++|| ++.+.-.-.+.+.+ ++||.+++.++.++... +|..-+. ..++....+++++-+.+-+
T Consensus 75 ~en~~~~y~viEGd~l~~~~~~~~~~~k~~~~~-~~g~i~k~t~eYe~~g~~~~e~~~~-~~ke~~~~~fK~iE~YLla 151 (155)
T d1icxa_ 75 EANLTYNYSIIGGEGLDESLEKISYESKILPGP-DGGSIGKINVKFHTKGDVLSETVRD-QAKFKGLGLFKAIEGYVLA 151 (155)
T ss_dssp GGGTEEEEEEEEETTSCTTEEEEEEEEEEEECG-GGCEEEEEEEEEEESSSSCCHHHHT-THHHHHHHHHHHHHHHHHH
T ss_pred ccccEEEEEEEecccccccEEEEEEEEEEecCC-CCCeEEEEEEEEEECCCCCChhhHH-HHHHHHHHHHHHHHHHHhh
Confidence 46799999999998 36778888888865 46789999999988544 4433332 2344455666666665544
|
| >d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Calicheamicin gene cluster protein CalC species: Micromonospora echinospora [TaxId: 1877]
Probab=97.68 E-value=0.0001 Score=67.06 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=84.1
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC------CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPN------LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~------V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
|+.+++|+||++.||++++| .++.|+|. +....+..+.++...+ ...+|-.+. ..+ ++++ .++++
T Consensus 6 v~~~~~i~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~~~~~gG~~~~--~~~dG~~~~--~g~-v~ei--~p~~r 76 (155)
T d1zxfa1 6 VRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLGVDKKGGRWYE--IDEQGEEHT--FGL-IRKV--DEPDT 76 (155)
T ss_dssp EEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCEEETTTTEEEC--CCTTTSCCC--CEE-EEEE--ETTTE
T ss_pred EEEEEEEeCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEEeeCCCceEEE--Eccccceee--eEE-EEEE--ecCcE
Confidence 77899999999999999996 57888753 2233333444554332 223332111 112 1222 47789
Q ss_pred EEEEEEecCC------cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 420 ISFEQVEGDF------DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 420 Isf~~veGdf------k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
|.|.-..++. ....-.|.|++.++++|+|++...--+..+ .-...-+...+...-..+|..|++++|+..+.
T Consensus 77 l~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~g~~~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~~~~~ 154 (155)
T d1zxfa1 77 LVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMG-TKHAKRVRNGMDKGWPTILQSFQDKIDEEGAK 154 (155)
T ss_dssp EEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTSC-HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEecCCccccccccceEEEEEEEecCCCCEEEEEEEeccCccc-chhHHHHHhhhhhhHHHHHHHHHHHhhhhccC
Confidence 9997433221 134678999998888899988654111000 01122344566778999999999999987654
|
| >d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein EF2215 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.64 E-value=0.00052 Score=63.89 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=83.6
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..++.|+||++.||+.|||-+.++.|++..... --+.|+..++... .+ ....++ +++ .++++|.|.
T Consensus 12 ~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~~--d~~~GG~~~~~~~--~~----~~~~~v-~~~--epp~rL~~t 80 (160)
T d2nn5a1 12 IYFGTERAISASPQTIWRYLTETDKLKQWFPELEIG--ELGVNGFWRFILP--DF----EETMPF-TDY--AEEKYLGVT 80 (160)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEE--ECSTTCEEEEEET--TE----EEEEEE-EEE--ETTTEEEEE
T ss_pred EEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCcc--cccCCCeeEEEcC--CC----CcceEE-EEE--ecCCEEEEE
Confidence 568889999999999999999999999999875322 2245665554321 11 112222 222 478899887
Q ss_pred EEecCCcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 424 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 424 ~veGdfk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
-- .-.-.|+|.+.++|+|+++++..+........+. ...+=...|..|++++|.....
T Consensus 81 W~-----~~~v~~eL~~~~~~~t~l~l~~~~~~~~~~~~~~------~~~GW~~~Ld~L~~~leg~~~~ 138 (160)
T d2nn5a1 81 WD-----TGIIYFDLKEQAPHQTLLVFSESLPENFTTPRHK------DIAGWSIVLNRLKQVVETPDAA 138 (160)
T ss_dssp ET-----TEEEEEEEEEEETTEEEEEEEEEECTTCSSCHHH------HHHHHHHHHHHHHHHHHCTTCC
T ss_pred ec-----CceEEEEEecCCCCeEEEEEEEecCccccchhhh------hHHHHHHHHHHHHHHHcCCCCC
Confidence 42 2356888988888889999987764311111111 1235678899999999865443
|
| >d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Major tree pollen allergen species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]
Probab=97.63 E-value=0.0011 Score=61.70 Aligned_cols=140 Identities=10% Similarity=0.119 Sum_probs=88.0
Q ss_pred eeEEEEEEEecCHHHHHHHH-hCcccc-cccccc-ceEEEEEecC-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 94 RRIKAEMLVNADVDSVWNAL-TDYERL-ADFVPN-LACSGRIPCP-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VL-TDYErl-peFiP~-v~~SeVLe~~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..+..++.+++||+++|.++ +|..++ |.++|. ++++++++.. +.|.++.+.-+...-..+.. .++.+..
T Consensus 3 ~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~K-----Erie~iD-- 75 (159)
T d1e09a_ 3 FTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVK-----HKIDSID-- 75 (159)
T ss_dssp EEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEE-----EEEEEEE--
T ss_pred eEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEE-----EEEEEEc--
Confidence 35678888999999999986 799875 999999 5566666532 12356666555332222111 1122222
Q ss_pred CCCceEEEEEEcccc-----ceeeEEEEEEecCCCCeeEEEEEEEEecCC--CccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 170 ASDRELYFSMVDGDF-----KKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 170 ~~~rrI~F~~veGDf-----k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~--piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
...+.+.|++++||+ +.+.-.-.+.+.+ ++||.+.++++.++.. .+|.--+ ...++.+-.++++|-+.+-.
T Consensus 76 ~~~~~~~y~viEGd~l~~~~~s~~~~~~~~~~~-~~g~vvkwt~eYe~~~~~~~~~e~~-~~~~e~~~~~~K~iEayLla 153 (159)
T d1e09a_ 76 KENYSYSYTLIEGDALGDTLEKISYETKLVASP-SGGSIIKSTSHYHTKGNVEIKEEHV-KAGKEKASNLFKLIETYLKG 153 (159)
T ss_dssp TTTTEEEEEECCCTTTGGGEEEEEEEEEECCCT-TSSEEEEEEEEEEECSSCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccEEEEEEEecccccccEEEEEEEEEEccCC-CCCcEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 478999999999984 3455555566543 5679999999988633 3333322 33444555566666665544
|
| >d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein BH1534 species: Bacillus halodurans [TaxId: 86665]
Probab=97.55 E-value=0.00053 Score=60.89 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=63.3
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCce
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDRE 174 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~rr 174 (732)
.|+.++.|+||++.||++|||.+.+..|++... . ....+++.. ...+.. .. .-.+.+.- .+++
T Consensus 6 ~i~~~~~i~ap~e~Vw~alt~p~~~~~W~~~~~---~-~~~~g~~~~-~~~~~~-~~--------~g~v~~~~---~~~~ 68 (138)
T d1xn5a_ 6 DIKKEVRFNAPIEKVWEAVSTSEGLAFWFMEND---L-KAETGHHFH-LQSPFG-PS--------PCQVTDVE---RPIK 68 (138)
T ss_dssp CEEEEEEESSCHHHHHHHTTSHHHHHTTSCCBC---C-CSCTTCEEE-EECSSC-EE--------EEEEEEEE---TTTE
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhceEccCCc---c-cccceeeEE-ecCCcc-ce--------eEEEEEEe---CCcE
Confidence 589999999999999999999999999998753 1 222333432 222111 11 11233433 4789
Q ss_pred EEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEE
Q 004764 175 LYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNV 210 (732)
Q Consensus 175 I~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V 210 (732)
|.|+.-.++ ..-.|.|++. +++|+|++.-.-
T Consensus 69 l~~~~~~~~---~~v~~~l~~~--~~gT~lt~~~~g 99 (138)
T d1xn5a_ 69 LSFTWDTDG---WSVTFHLKEE--ENGTIFTIVHSG 99 (138)
T ss_dssp EEEEETTTT---EEEEEEEEEC--SSSEEEEEEEEC
T ss_pred EEEEecCCC---eEEEEEEEEc--CCcEEEEEEEec
Confidence 999874443 4568999994 578999987554
|
| >d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein CV1439 species: Chromobacterium violaceum [TaxId: 536]
Probab=97.52 E-value=0.0011 Score=58.81 Aligned_cols=132 Identities=16% Similarity=0.086 Sum_probs=78.4
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccc---eEEEEEecCCCCeeEEEEEe-ee-eeEEEEEEEEEEEEEEEeecC
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNL---ACSGRIPCPYPGRIWLEQRG-LQ-RALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v---~~SeVLe~~~ggrirv~Qvg-~~-~il~~~~~arvvLdv~E~~~~ 169 (732)
.|+.+..|+||++.||+++||-+.+.+|++.- .....++...||+.+..... .. ....+ .-.+.+..
T Consensus 3 ti~~~r~i~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~------~g~v~~~~-- 74 (143)
T d1z94a1 3 TIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAF------GGRYLELV-- 74 (143)
T ss_dssp CEEEEEEESSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEE------EEEEEEEE--
T ss_pred EEEEEEEECCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcEEEE------EEEEEEec--
Confidence 36677789999999999999999999997631 11222334456654433221 11 11111 12233433
Q ss_pred CCCceEEEEEEcc--cc-ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 170 ASDRELYFSMVDG--DF-KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 170 ~~~rrI~F~~veG--Df-k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
++++|.|+-.-. +. ....=.|.|++. +++|+|+....--|+... ...++..-...|..|++.+|+
T Consensus 75 -p~~~i~~t~~~~~~~~~~~~~v~~~l~~~--~~gT~lt~~~~~~~~~~~-----~~~~~~GW~~~l~~L~~~lE~ 142 (143)
T d1z94a1 75 -PGERIRYTDRFDDAGLPGDMITTITLAPL--SCGADLSIVQEGIPDAIP-----PENCYLGWQQSLKQLAALVEP 142 (143)
T ss_dssp -TTTEEEEEEEESCCC---CEEEEEEEEEE--TTEEEEEEEEECCCTTSC-----HHHHHHHHHHHHHHHHHHHSC
T ss_pred -CCeEEEEEEeccCCCCCCcEEEEEEEEEc--CCCEEEEEEEEcCCChhH-----HHHHHHHHHHHHHHHHHHHcC
Confidence 468888875422 22 233457889985 478999987664443222 223445567788888887775
|
| >d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein SA2116 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.52 E-value=0.0025 Score=58.06 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=84.3
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCcccccccccc----ceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPN----LACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~----v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
...|+.+..|+||++.||++|||-+.+.+|+++ +..+ ..+...||+.+........- .+.+. -.+.+..
T Consensus 6 ~~~i~ier~i~Ap~e~Vw~a~tdpe~l~~W~~p~~~~~~~~-~~d~~~Gg~~~~~~~~~~g~-~~~~~----g~v~e~~- 78 (164)
T d2il5a1 6 HVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEI-EADVKEGGKYRIVDQQRNGK-VNVIE----GIYESLV- 78 (164)
T ss_dssp EEEEEEEEEESSCHHHHHHHTTCHHHHTTTSSSCTTTEEEE-EECCSTTCEEEEEEECGGGC-EEEEE----EEEEEEE-
T ss_pred cEEEEEEEEECCCHHHHHHHHcCHHHHhCcccCCCccceEE-EeecccCceEEEEEecCCcc-eEEEE----EEEEEEc-
Confidence 346888899999999999999999999998764 2223 23444566654332322211 11111 1223333
Q ss_pred CCCCceEEEEEEc-c-ccceeeEEEEEEecCCCCeeEEEEEEEEecCCCc---cHHH------HHHHHHhCHHHHHHHHH
Q 004764 169 SASDRELYFSMVD-G-DFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNF---PAIF------LERIIRSDLPVNLQALA 237 (732)
Q Consensus 169 ~~~~rrI~F~~ve-G-Dfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~pi---P~~L------v~~~ir~~L~~~L~ALk 237 (732)
++++|.|+..- + +-....-.+.+.+. .+++|+|++..+..+...- ...+ ....+.......|..|+
T Consensus 79 --p~~~i~~t~~~~~~~~~~~~~~~~~~e~-~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~ 155 (164)
T d2il5a1 79 --MDEYVKMTIGMPGLSETQDVIEVEFFER-ETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMY 155 (164)
T ss_dssp --TTTEEEEEESCC--CCCCEEEEEEEEEC-SSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEEEeccCCCCCceEEEEEEEEc-CCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46889887631 1 11222334555443 2578999888876554321 1111 23346678889999999
Q ss_pred HHHHhh
Q 004764 238 CRAERS 243 (732)
Q Consensus 238 ~raEr~ 243 (732)
+.+|..
T Consensus 156 ~~lE~g 161 (164)
T d2il5a1 156 HVIETS 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHhcc
Confidence 999864
|
| >d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Uncharacterized protein SPO3351 species: Silicibacter pomeroyi [TaxId: 89184]
Probab=97.48 E-value=0.00045 Score=61.44 Aligned_cols=129 Identities=10% Similarity=0.007 Sum_probs=74.7
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC------CcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCe
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPN------LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 419 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~------V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rr 419 (732)
+..+..|+||++.||++++|-+.+..|++. .....+--+.++..+.......|.. +....++ +++ .++++
T Consensus 3 l~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~-~~~~g~v-~~~--~p~~r 78 (143)
T d3elia1 3 LRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQR-YKVSGQV-THV--KPPQS 78 (143)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCE-EEEEEEE-EEE--ETTTE
T ss_pred EEEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcE-EEEEEEE-EEc--CCCCE
Confidence 456678999999999999999999999842 1122222223444444444444432 2223332 122 47788
Q ss_pred EEEEEE-ec-C-Cc--ceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 420 ISFEQV-EG-D-FD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 420 Isf~~v-eG-d-fk--~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
|+|.-. .+ + .. ...-.|.|++.++ +|+|++...- ++..-.......+....|..|++++
T Consensus 79 l~~t~~~~~~~~~~~~~~~vt~~l~~~~~-gT~l~~~~~~-------~~~~~~~~~~~~GW~~~L~~L~~~l 142 (143)
T d3elia1 79 VGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHRE-------LGDDEMSLRHEEGWTSSLRKLAAEL 142 (143)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEES-------CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCCCCCCCcEEEEEEEEEcCC-CEEEEEEEEc-------CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 877642 22 1 11 2345567778765 4998876531 2222334456677888888888764
|
| >d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein EF2215 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.41 E-value=0.0023 Score=59.42 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=85.7
Q ss_pred cCcceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecC
Q 004764 90 SWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHS 169 (732)
Q Consensus 90 ~~~~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~ 169 (732)
..+...++.+..|+||++.||+.|||-+++++|++..... +.+.||+++..-.+ .. . . -.+.++.
T Consensus 8 ~~~~~~f~~er~i~ap~e~Vw~AlTdpe~l~~W~~~~~~~---d~~~GG~~~~~~~~-~~---~--~----~~v~~~e-- 72 (160)
T d2nn5a1 8 ENQTIYFGTERAISASPQTIWRYLTETDKLKQWFPELEIG---ELGVNGFWRFILPD-FE---E--T----MPFTDYA-- 72 (160)
T ss_dssp ETTEEEEEEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEE---ECSTTCEEEEEETT-EE---E--E----EEEEEEE--
T ss_pred cCCcEEEEEEEEecCCHHHHHHHHcCHHHHHhhCCCCCcc---cccCCCeeEEEcCC-CC---c--c----eEEEEEe--
Confidence 3445568889999999999999999999999999986533 33567776543221 11 1 1 1233443
Q ss_pred CCCceEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhhc
Q 004764 170 ASDRELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSF 244 (732)
Q Consensus 170 ~~~rrI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~~ 244 (732)
++++|.|+--.+ .=.|.|++.+ +++|+|+.+=...+...-+..... ..=...|..|++.+|...
T Consensus 73 -pp~rL~~tW~~~-----~v~~eL~~~~-~~~t~l~l~~~~~~~~~~~~~~~~----~GW~~~Ld~L~~~leg~~ 136 (160)
T d2nn5a1 73 -EEKYLGVTWDTG-----IIYFDLKEQA-PHQTLLVFSESLPENFTTPRHKDI----AGWSIVLNRLKQVVETPD 136 (160)
T ss_dssp -TTTEEEEEETTE-----EEEEEEEEEE-TTEEEEEEEEEECTTCSSCHHHHH----HHHHHHHHHHHHHHHCTT
T ss_pred -cCCEEEEEecCc-----eEEEEEecCC-CCeEEEEEEEecCccccchhhhhH----HHHHHHHHHHHHHHcCCC
Confidence 478998876332 2378888753 578999888777666554433221 234568889999888653
|
| >d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Plant pathogenesis-related protein PR10 species: Yellow lupine (Lupinus luteus) [TaxId: 3873]
Probab=97.38 E-value=0.0035 Score=58.24 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=90.8
Q ss_pred eeEEEEEEEecCHHHHHHHH-hCcccc-ccccccceEEEEEecC-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 94 RRIKAEMLVNADVDSVWNAL-TDYERL-ADFVPNLACSGRIPCP-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VL-TDYErl-peFiP~v~~SeVLe~~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
..+..++.+++|++++|.++ .|..++ |.+.+.++++++++.+ +.|.++.|.-+....... +. .++.... .
T Consensus 3 ~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~---~K--erie~vD--~ 75 (157)
T d1xdfa1 3 FTFEDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGNGGPGTIKKLTLIEGGETKY---VL--HKIEAVD--E 75 (157)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESSSSTTCEEEEEEEETTEEEE---EE--EEEEEEE--G
T ss_pred eEEEEEEeccCCHHHHHHHHhhchhhccccchhheecceeecCCCCCCcEEEEEEcCCCccEE---EE--EEEEEEe--c
Confidence 35788999999999999876 699886 8888888888888753 123566665433321111 11 1222222 3
Q ss_pred CCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecC--CCccHHHHHHHHHhCHHHHHHHHHHHHHh
Q 004764 171 SDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAER 242 (732)
Q Consensus 171 ~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~--~piP~~Lv~~~ir~~L~~~L~ALk~raEr 242 (732)
..+.+.|++++|| ++.+.-.-.+.+.+ ++||.+++.++.++. ..+|.--++. .+.-...+++++-+.+..
T Consensus 76 e~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~-~ggsv~k~t~eYe~~~~~~~~~e~ik~-~~e~~~~~~K~iEaYLla 152 (157)
T d1xdfa1 76 ANLRYNYSIVGGVGLPDTIEKISFETKLVEGA-NGGSIGKVTIKIETKGDAQPNEEEGKA-AKARGDAFFKAIENYLSA 152 (157)
T ss_dssp GGTEEEEEEESSTTSCTTEEEEEEEEEEEECT-TSSEEEEEEEEEEESSSSCCCHHHHHH-HHHHHHTTTHHHHHHHHT
T ss_pred hhcEEEEEEEecccccccEEEEEEEEEEEcCC-CCceEEEEEEEEEECCCCCCCHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 6789999999997 47888889999865 467888888888764 3345444422 233344455555554443
|
| >d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Major tree pollen allergen species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]
Probab=97.31 E-value=0.0021 Score=59.85 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=90.6
Q ss_pred eEEEEEEEecCHHHHHHHH-hCcccc-ccccccce-EEEEEecC-CCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCC
Q 004764 95 RIKAEMLVNADVDSVWNAL-TDYERL-ADFVPNLA-CSGRIPCP-YPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSA 170 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VL-TDYErl-peFiP~v~-~SeVLe~~-~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~ 170 (732)
.+.-++.+++|++++|.++ .|..++ |.++|... ++++++.. +.|.++.+..+...-... +..++.+.. .
T Consensus 4 ~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~-----~Kerve~iD--~ 76 (159)
T d1fm4a_ 4 NYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKY-----VKDRVDEVD--H 76 (159)
T ss_dssp EEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSE-----EEEEEEEEE--T
T ss_pred EEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceE-----EEEEEEEEc--c
Confidence 4677888999999999986 698884 99999854 55555532 123566554432221111 111222222 4
Q ss_pred CCceEEEEEEccc-----cceeeEEEEEEecCCCCeeEEEEEEEEecCC--CccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 171 SDRELYFSMVDGD-----FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 171 ~~rrI~F~~veGD-----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~--piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
..+.+.|++++|| ++.|...-.+.+.+ +++|.+.+.++.++.. .+|.--+ +..+.....++++|-+++-.+
T Consensus 77 ~~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~-~gg~v~kwt~eYe~~~~~~~~~e~~-k~~ke~~~~~~K~iE~YLlan 154 (159)
T d1fm4a_ 77 TNFKYNYSVIEGGPVGDTLEKISNEIKIVATP-DGGCVLKISNKYHTKGNHEVKAEQV-KASKEMGETLLRAVESYLLAH 154 (159)
T ss_dssp TTTEEEEEEEEBTTBTTTEEEEEEEEEEEECT-TSCEEEEEEEEEEESTTCCCCTTTT-HHHHHHHHHHHHHHHHHHHHC
T ss_pred cccEEEEEEEeccccccceEEEEEEEEEecCC-CCceEEEEEEEEEECCCCCCCHHHH-HHHHHHHHHHHHHHHHHHhhC
Confidence 7899999999997 57889999999975 4678889998887643 3343333 223444556677776666543
|
| >d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Hypothetical protein BC4709 species: Bacillus cereus [TaxId: 1396]
Probab=97.23 E-value=0.0011 Score=59.71 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
..|..++.|+||++.||++|||-+++..|++... + +...|++..+. +...... . .+.+.. +++
T Consensus 8 ~~i~~~~~i~ap~e~Vw~alTdp~~l~~W~~~~~---~-~~~~G~~~~~~--~~~g~~~----g----~v~~~~---p~~ 70 (143)
T d1xn6a_ 8 NDIKQTIVFNASIQKVWSVVSTAEGIASWFMPND---F-VLEVGHEFHVQ--SPFGPSP----C----KVLEID---EPN 70 (143)
T ss_dssp CCEEEEEEESSCHHHHHHTTSCSHHHHTTSCCBC---C-CCCTTCEECBC--CTTCCCC----E----EEEEEE---TTT
T ss_pred CeEEEEEEECCCHHHHHHHhcChHHhceEeeccC---c-ccccCceEEEe--cccccee----E----EEEEEe---CCc
Confidence 3599999999999999999999999999998743 2 33345554221 1111111 1 122332 368
Q ss_pred eEEEEEEccccceeeEEEEEEecCCCCeeEEEEEEEEe-c------CCCccHHHHHHHHHhCHHHHH-HHHHHHHH
Q 004764 174 ELYFSMVDGDFKKFEGKWSIKSGTRSSTTTLSYEVNVI-P------RLNFPAIFLERIIRSDLPVNL-QALACRAE 241 (732)
Q Consensus 174 rI~F~~veGDfk~f~GsW~Lepl~~g~gT~LtY~l~V~-P------~~piP~~Lv~~~ir~~L~~~L-~ALk~raE 241 (732)
+|.|+.-.+. ..=+|.|++.+ +++|+|++.-.-- + ....-.......+...=...| +.||+.+|
T Consensus 71 ~l~~tw~~~~---~~v~~~l~~~~-~G~T~l~l~h~g~~~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~~Lk~~lE 142 (143)
T d1xn6a_ 71 HLSFSWDTDG---WVVSFDLKDLG-DNKTEFTLIHGGWKHPDEILPKANAKSSIIRDRMSGGWVAIVNEKLKKVVE 142 (143)
T ss_dssp EEEEEETTTT---EEEEEEEEEEE-TTEEEEEEEEECCCSTTCBCTTTCSBHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred EEEEEEcCCC---cEEEEEEEEcC-CCcEEEEEEEeCCCCchhhhhhcchhhHHHHHHHhhCHHHHHHHHHHHHhC
Confidence 8988753222 23478899864 4679998764421 1 111223333444445545555 57888776
|
| >d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Uncharacterized protein BPP1335 species: Bordetella parapertussis [TaxId: 519]
Probab=97.15 E-value=0.00083 Score=63.01 Aligned_cols=133 Identities=6% Similarity=0.057 Sum_probs=81.0
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccce------------eEEEEEEEEEEEEE
Q 004764 346 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGL------------LYMVLHARVVMDIC 413 (732)
Q Consensus 346 V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gl------------l~~~~~~rvvLdv~ 413 (732)
++-+..|+||+++||++|+|-+.+.+|+.... +-.+.++..++...+..+. .......++ +++
T Consensus 21 l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~~---~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v-~~~- 95 (183)
T d2k5ga1 21 IRFERLLPGPIERVWAWLADADKRARWLAGGE---LPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTL-LRC- 95 (183)
T ss_dssp EEEEEEESSSSHHHHHHHHCHHHHTTTSCCCC---CCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEE-EEE-
T ss_pred EEEEEEeCCCHHHHHHHHhChHHHhhhcCCCC---ccccCCCEEEEEecCCCCcccccccccccCCCceeEEEEE-EEE-
Confidence 55677899999999999999999999986431 1122344444433211110 001222332 122
Q ss_pred eeCCCeEEEEEEecC-CcceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 004764 414 EQHEQEISFEQVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 492 (732)
Q Consensus 414 e~~~rrIsf~~veGd-fk~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~~L~ALK~rAE~~~~~ 492 (732)
.++++|+|.-..+. -....-.|+|++.++ +|+|++...-- ++.-........-...|..|++++|.....
T Consensus 96 -~p~~rl~~tw~~~~~~~~s~v~~~l~~~g~-gT~ltl~~~~~-------~~~~~~~~~~~GW~~~L~~L~~~leg~~~~ 166 (183)
T d2k5ga1 96 -EPPRVLALTWGGGAGEAPSEVLFELSEAGE-QVRLVLTHTRL-------ADRAAMLDVAGGWHAHLAVLAGKLAGQAPP 166 (183)
T ss_dssp -ETTTEEEEECCCCSSSSCCEEEEEEEECSS-SEEEEEEEECC-------CSHHHHHHHTTTTTTHHHHHHHHHHTSCCC
T ss_pred -eCCeEEEEEeccCCCCCcEEEEEEEEEcCC-cEEEEEEEecC-------CChhhHHHHhhhHHHHHHHHHHHHCCCCCC
Confidence 47789998765532 234466789998775 49998765421 112222345667788899999999865443
|
| >d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Calicheamicin gene cluster protein CalC species: Micromonospora echinospora [TaxId: 1877]
Probab=96.93 E-value=0.0015 Score=58.92 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=79.8
Q ss_pred EEEEEEEecCHHHHHHHHhCccccccccccc------eEEEEEecCCCCeeEEE-EEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 96 IKAEMLVNADVDSVWNALTDYERLADFVPNL------ACSGRIPCPYPGRIWLE-QRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 96 V~asi~V~AP~e~Vw~VLTDYErlpeFiP~v------~~SeVLe~~~ggrirv~-Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
|+.++.|+||++.||+++|| ++++|.|.- ..... ....+|+.... ..|.. .. + ..++ +..
T Consensus 6 v~~~~~i~Ap~e~Vf~a~te--~~~~Ww~~~~~~~~~~~~~~-~~~~gG~~~~~~~dG~~-~~-~----g~v~---ei~- 72 (155)
T d1zxfa1 6 VRHSVTVKADRKTAFKTFLE--GFPEWWPNNFRTTKVGAPLG-VDKKGGRWYEIDEQGEE-HT-F----GLIR---KVD- 72 (155)
T ss_dssp EEEEEEESSHHHHHHHHHTT--CSSSSSSGGGSTTTTCSSCE-EETTTTEEECCCTTTSC-CC-C----EEEE---EEE-
T ss_pred EEEEEEEeCCHHHHHHHHHh--hhHhhcCCCCCCceEEEEEE-eeCCCceEEEEccccce-ee-e----EEEE---EEe-
Confidence 88999999999999999996 688887642 22222 22345553221 11111 11 0 1122 222
Q ss_pred CCCCceEEEEEEccc-c-----ceeeEEEEEEecCCCCeeEEEEEEEEecCCCcc-HHHHHHHHHhCHHHHHHHHHHHHH
Q 004764 169 SASDRELYFSMVDGD-F-----KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFP-AIFLERIIRSDLPVNLQALACRAE 241 (732)
Q Consensus 169 ~~~~rrI~F~~veGD-f-----k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP-~~Lv~~~ir~~L~~~L~ALk~raE 241 (732)
.+++|.|+-..++ . ....=.|.|++.+ +++|+|+..=.--+..... ..-....+...-...|..|++.+|
T Consensus 73 --p~~rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~-~~~T~ltl~h~g~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le 149 (155)
T d1zxfa1 73 --EPDTLVIGWRLNGFGRIDPDNSSEFTVTFVADG-QKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKID 149 (155)
T ss_dssp --TTTEEEEECCCSSSSSCCCSSCCCEEEEEEEET-TTEEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred --cCcEEEEEEecCCccccccccceEEEEEEEecC-CCCEEEEEEEeccCcccchhHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 4688888754332 1 2234578888863 4689888764432222221 122334567789999999999999
Q ss_pred hhcc
Q 004764 242 RSFG 245 (732)
Q Consensus 242 r~~~ 245 (732)
...+
T Consensus 150 ~~~~ 153 (155)
T d1zxfa1 150 EEGA 153 (155)
T ss_dssp HHHT
T ss_pred hhcc
Confidence 8654
|
| >d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Uncharacterized protein BPP1335 species: Bordetella parapertussis [TaxId: 519]
Probab=96.72 E-value=0.0046 Score=57.67 Aligned_cols=136 Identities=14% Similarity=0.099 Sum_probs=81.2
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEE--------EEEEEEEEEEEEE
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALY--------WHIEARVVLDLQE 165 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~--------~~~~arvvLdv~E 165 (732)
+.++-+..|+||++.||++|||-+++.+|+.... ++.+.|+.+.+.-.+...... ........-.+.+
T Consensus 19 ~~l~~er~~~Ap~e~VW~AlTdpe~l~~W~~p~~----~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 94 (183)
T d2k5ga1 19 QSIRFERLLPGPIERVWAWLADADKRARWLAGGE----LPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLR 94 (183)
T ss_dssp SSEEEEEEESSSSHHHHHHHHCHHHHTTTSCCCC----CCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEEEEEEE
T ss_pred ceEEEEEEeCCCHHHHHHHHhChHHHhhhcCCCC----ccccCCCEEEEEecCCCCcccccccccccCCCceeEEEEEEE
Confidence 4588888999999999999999999999987542 123345554333221100000 0000001112223
Q ss_pred eecCCCCceEEEEEEccc-cceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 004764 166 LIHSASDRELYFSMVDGD-FKKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 243 (732)
Q Consensus 166 ~~~~~~~rrI~F~~veGD-fk~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~raEr~ 243 (732)
.. .+++|.|+...++ -....=.|.|++. +++|+|+..-.-- . ..-........-...|..|++.++..
T Consensus 95 ~~---p~~rl~~tw~~~~~~~~s~v~~~l~~~--g~gT~ltl~~~~~---~--~~~~~~~~~~GW~~~L~~L~~~leg~ 163 (183)
T d2k5ga1 95 CE---PPRVLALTWGGGAGEAPSEVLFELSEA--GEQVRLVLTHTRL---A--DRAAMLDVAGGWHAHLAVLAGKLAGQ 163 (183)
T ss_dssp EE---TTTEEEEECCCCSSSSCCEEEEEEEEC--SSSEEEEEEEECC---C--SHHHHHHHTTTTTTHHHHHHHHHHTS
T ss_pred Ee---CCeEEEEEeccCCCCCcEEEEEEEEEc--CCcEEEEEEEecC---C--ChhhHHHHhhhHHHHHHHHHHHHCCC
Confidence 32 3688998876553 2333457888884 5789998775432 1 12222345667778899999988864
|
| >d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Uncharacterized protein SPO3351 species: Silicibacter pomeroyi [TaxId: 89184]
Probab=96.67 E-value=0.012 Score=51.80 Aligned_cols=130 Identities=8% Similarity=0.037 Sum_probs=69.5
Q ss_pred eEEEEEEEecCHHHHHHHHhCccccccccccc------eEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeec
Q 004764 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNL------ACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIH 168 (732)
Q Consensus 95 rV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v------~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~ 168 (732)
.++.+..|+||++.||+++||-+++.+|++.- ....+ +...+|+.+....+...-. +... -.+.+.-
T Consensus 2 el~i~r~i~a~~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~~-~~~~gg~~~~~~~~~~g~~-~~~~----g~v~~~~- 74 (143)
T d3elia1 2 DLRLEREFAVAPEALFAWVSDGAKLLQWWGPEGLHVPADQHDL-DFTRLGPWFSVMVNGEGQR-YKVS----GQVTHVK- 74 (143)
T ss_dssp EEEEEEEESSCHHHHHHHTTCHHHHHHHCSSTTCBCCTTSBCC-CCSSSEEEEEEEECTTCCE-EEEE----EEEEEEE-
T ss_pred eEEEEEEECCCHHHHHHHhcCHHHHhhhcCCCCceeeeeeEEE-eeccCccEEEEEECCCCcE-EEEE----EEEEEcC-
Confidence 36778899999999999999999999998531 11111 2223333222222111100 1111 1223332
Q ss_pred CCCCceEEEEEE--ccc-cce--eeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHHHHHHHHHHH
Q 004764 169 SASDRELYFSMV--DGD-FKK--FEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 240 (732)
Q Consensus 169 ~~~~rrI~F~~v--eGD-fk~--f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~~L~ALk~ra 240 (732)
++++|.|+-. ..+ ... ..-.|.|++. +++|+|++.-.- +|..-.....+..-...|..|++.+
T Consensus 75 --p~~rl~~t~~~~~~~~~~~~~~~vt~~l~~~--~~gT~l~~~~~~-----~~~~~~~~~~~~GW~~~L~~L~~~l 142 (143)
T d3elia1 75 --PPQSVGFTWGWHDDDDRRGAESHVMFIVEPC--AKGARLILDHRE-----LGDDEMSLRHEEGWTSSLRKLAAEL 142 (143)
T ss_dssp --TTTEEEEEEEEECTTSCEEEEEEEEEECCBC----CEEEEEEEES-----CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEEEeecCCCCCCCCcEEEEEEEEEc--CCCEEEEEEEEc-----CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678877643 222 222 2334666663 578999887542 2333334455667777777777643
|
| >d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Hypothetical protein At1G24000 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.10 E-value=0.15 Score=44.97 Aligned_cols=94 Identities=9% Similarity=0.235 Sum_probs=66.4
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
...+..+.|++|++..|+++.|....| |.-. + ..| ++........++|+
T Consensus 5 gkl~~eveik~~a~kf~~~~~~~~~~~-~~~~-----------~-----------------Ker--Ve~vD~en~sity~ 53 (120)
T d1vjha_ 5 GALSVKFDVKCPADKFFSAFVEDTNRP-FEKN-----------G-----------------KTE--IEAVDLVKKTMTIQ 53 (120)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHTTSC-SSTT-----------C-----------------EEE--EEEEETTTTEEEEE
T ss_pred eEEEEEEEecCCHHHHHHHhhhccCCC-CCcc-----------c-----------------EEE--EEEEcCCCCEEEEE
Confidence 568899999999999999997655432 1100 0 111 12222456899999
Q ss_pred EEecCC----cceeEEEEEEEcCCC-eEEEEEEEEEEecc-CccchHHHHH
Q 004764 424 QVEGDF----DSFQGKWLFEQLGSH-HTLLKYSVESKMQK-NSLLSEAIME 468 (732)
Q Consensus 424 ~veGdf----k~f~G~W~Lep~gdG-~TrVty~v~~ep~~-d~~Lp~~lv~ 468 (732)
.++|++ +.|.+...+.|.++| +|.++|.+.++..+ +.+-|..+++
T Consensus 54 vieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~e 104 (120)
T d1vjha_ 54 MSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIID 104 (120)
T ss_dssp EECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHH
T ss_pred EEeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHHH
Confidence 999985 378899999998765 79999999999764 3344655543
|
| >d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: Pathogenesis-related protein 10 (PR10)-like domain: Hypothetical protein At1G24000 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.77 E-value=0.24 Score=43.54 Aligned_cols=96 Identities=10% Similarity=0.230 Sum_probs=68.5
Q ss_pred ceeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCC
Q 004764 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASD 172 (732)
Q Consensus 93 ~rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~ 172 (732)
.-.+..++.|.+|++..|.++.|....+ |. ..+..|| .+.. ...
T Consensus 4 ~gkl~~eveik~~a~kf~~~~~~~~~~~-~~------------~~~KerV---------------------e~vD--~en 47 (120)
T d1vjha_ 4 KGALSVKFDVKCPADKFFSAFVEDTNRP-FE------------KNGKTEI---------------------EAVD--LVK 47 (120)
T ss_dssp EEEEEEEEEESSCHHHHHHHHHHHTTSC-SS------------TTCEEEE---------------------EEEE--TTT
T ss_pred ceEEEEEEEecCCHHHHHHHhhhccCCC-CC------------cccEEEE---------------------EEEc--CCC
Confidence 3468899999999999999997655421 11 0111111 1121 468
Q ss_pred ceEEEEEEccc----cceeeEEEEEEecCCCCeeEEEEEEEEec---CCCccHHHHHHH
Q 004764 173 RELYFSMVDGD----FKKFEGKWSIKSGTRSSTTTLSYEVNVIP---RLNFPAIFLERI 224 (732)
Q Consensus 173 rrI~F~~veGD----fk~f~GsW~Lepl~~g~gT~LtY~l~V~P---~~piP~~Lv~~~ 224 (732)
+.++|+.++|| ++.|.....+.|.+.|+|+.+.|.+..++ ..+.|..+.+.+
T Consensus 48 ~sity~vieGdvl~~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~e~~ 106 (120)
T d1vjha_ 48 KTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDES 106 (120)
T ss_dssp TEEEEEEECTTGGGTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHH
T ss_pred CEEEEEEEeeccccceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 99999999998 49999999999976556899999999876 455676665443
|
| >d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0087 Score=53.20 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=71.1
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEEeeCCEEEEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEE
Q 004764 344 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFE 423 (732)
Q Consensus 344 ~~V~asI~I~APpE~VW~vLtDyE~yPef~P~V~ssrVLer~~g~~rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~ 423 (732)
..+..+.+++||+++||++++|-+.+..|+..- +++--+.|+..++ ..+.. ..++ +++ .++++|.|.
T Consensus 4 ~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~~--~~~d~~~Gg~f~~----~~g~~----~G~~-~ev--~p~~rlv~t 70 (132)
T d1x53a1 4 CKITLKETFLTSPEELYRVFTTQELVQAFTHAP--ATLEADRGGKFHM----VDGNV----SGEF-TDL--VPEKHIVMK 70 (132)
T ss_dssp EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSC--CBCCCSTTCCCBB----TTTTE----ECCE-EEE--ETTTEEEEE
T ss_pred eEEEEEEEECCCHHHHHHHHcCHHHHHhhhCCc--cccccccCCEEEE----Eecce----eEEE-EEE--eCCCEEEEE
Confidence 457778899999999999999999999998432 2222234443332 12211 1121 122 367788765
Q ss_pred --EEecCC-cceeEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHH
Q 004764 424 --QVEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDY 485 (732)
Q Consensus 424 --~veGdf-k~f~G~W~Lep~gdG~TrVty~v~~ep~~d~~Lp~~lv~r~lr~~l~~-~L~ALK~r 485 (732)
..+.+- ....-.|.|++.+ ++|+|++...--| ..- ...++.+-.. .++.||+.
T Consensus 71 w~~~~~~~~~~s~vt~~l~~~~-~~T~l~l~~~g~p-------~~~-~e~~~~GW~~~~~~~lk~~ 127 (132)
T d1x53a1 71 WRFKSWPEGHFATITLTFIDKN-GETELCMEGRGIP-------APE-EERTRQGWQRYYFEGIKQT 127 (132)
T ss_dssp EEETTSCTTCCEEEEEECCBCS-SCEEEEEEEEEEE-------HHH-HHHHHHTTHHHHHHHHHHH
T ss_pred EecCCCCCCCcEEEEEEEEECC-CcEEEEEEEECCC-------cch-HHHHHhhHHHHHHHHHHHH
Confidence 222222 1346788999876 5699998875322 222 2334455443 57777765
|
| >d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: AHSA1 domain domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.11 Score=45.69 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=70.8
Q ss_pred eeEEEEEEEecCHHHHHHHHhCccccccccccceEEEEEecCCCCeeEEEEEeeeeeEEEEEEEEEEEEEEEeecCCCCc
Q 004764 94 RRIKAEMLVNADVDSVWNALTDYERLADFVPNLACSGRIPCPYPGRIWLEQRGLQRALYWHIEARVVLDLQELIHSASDR 173 (732)
Q Consensus 94 rrV~asi~V~AP~e~Vw~VLTDYErlpeFiP~v~~SeVLe~~~ggrirv~Qvg~~~il~~~~~arvvLdv~E~~~~~~~r 173 (732)
..|..+..++||++.||++|||-+++..|+..-... +.+.||+.++. .|. + +- .++ +.. +++
T Consensus 4 ~~i~~~r~~~ap~e~Vw~a~tdpe~l~~W~~~~~~~---d~~~Gg~f~~~-~g~--~-----~G-~~~---ev~---p~~ 65 (132)
T d1x53a1 4 CKITLKETFLTSPEELYRVFTTQELVQAFTHAPATL---EADRGGKFHMV-DGN--V-----SG-EFT---DLV---PEK 65 (132)
T ss_dssp EEEEEEEEESSCHHHHHHHTTCHHHHHHHSCSCCBC---CCSTTCCCBBT-TTT--E-----EC-CEE---EEE---TTT
T ss_pred eEEEEEEEECCCHHHHHHHHcCHHHHHhhhCCcccc---ccccCCEEEEE-ecc--e-----eE-EEE---EEe---CCC
Confidence 357888999999999999999999999999544322 33455654332 111 1 11 112 222 356
Q ss_pred eEEEE--EEcccc-ceeeEEEEEEecCCCCeeEEEEEEEEecCCCccHHHHHHHHHhCHHH-HHHHHHH
Q 004764 174 ELYFS--MVDGDF-KKFEGKWSIKSGTRSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPV-NLQALAC 238 (732)
Q Consensus 174 rI~F~--~veGDf-k~f~GsW~Lepl~~g~gT~LtY~l~V~P~~piP~~Lv~~~ir~~L~~-~L~ALk~ 238 (732)
+|.|+ ..+.+- ....=.|.|++. +++|+|+..-.-. |..-. ..++..-.. .|..||+
T Consensus 66 rlv~tw~~~~~~~~~~s~vt~~l~~~--~~~T~l~l~~~g~-----p~~~~-e~~~~GW~~~~~~~lk~ 126 (132)
T d1x53a1 66 HIVMKWRFKSWPEGHFATITLTFIDK--NGETELCMEGRGI-----PAPEE-ERTRQGWQRYYFEGIKQ 126 (132)
T ss_dssp EEEEEEEETTSCTTCCEEEEEECCBC--SSCEEEEEEEEEE-----EHHHH-HHHHHTTHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCcEEEEEEEEEC--CCcEEEEEEEECC-----CcchH-HHHHhhHHHHHHHHHHH
Confidence 66654 333221 223347888884 5789998887643 44333 334455444 4777776
|
| >d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: PA1206-like domain: Hypothetical protein PA1206 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.50 E-value=12 Score=33.46 Aligned_cols=123 Identities=12% Similarity=0.185 Sum_probs=75.2
Q ss_pred CHHHHHHHHh-ccCcccccCcCCcEEEEEEeeCCEE-EEEEEeccceeEEEEEEEEEEEEEeeCCCeEEEEEEe-cCCcc
Q 004764 355 PVSEVWNVMT-AYETLPEIVPNLAISKILSRENNKV-RILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDS 431 (732)
Q Consensus 355 PpE~VW~vLt-DyE~yPef~P~V~ssrVLer~~g~~-rv~q~g~~gll~~~~~~rvvLdv~e~~~rrIsf~~ve-Gdfk~ 431 (732)
..+++|+-|- -.++=-.|+|++.+|+|+++.++.+ |.... .+ ..+..+ ++..++.+|.|.... |+...
T Consensus 21 Tr~QlW~GL~lrar~p~~Fv~~l~~c~v~~~~~~~~~Rel~f--g~---~~v~e~----Vtl~~~~~v~f~~~a~~~~~g 91 (151)
T d2ffsa1 21 DRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRRLYL--PG---LVVEDE----VVLKAPDSAHYSIKPSAEVAG 91 (151)
T ss_dssp CHHHHHHHHHHHHHCGGGTCTTCCEEEEEEECSSEEEEEEEE--TT---EEEEEE----EEEETTTEEEEEECCCSSSBE
T ss_pred CHHHHHHHHHHhhcCHhhcccccceEEEEEecCCeEEEEEEE--CC---ceeEEE----EEEcCCcEEEEEcccccCCCC
Confidence 4579998665 5566667999999999999988875 33222 22 234455 444588999997543 44333
Q ss_pred eeEEEEEEEcCCCeEEEEEEEEEEecc---CccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004764 432 FQGKWLFEQLGSHHTLLKYSVESKMQK---NSLLSEAIMEEVIYEDLPSNLCAIRDYV 486 (732)
Q Consensus 432 f~G~W~Lep~gdG~TrVty~v~~ep~~---d~~Lp~~lv~r~lr~~l~~~L~ALK~rA 486 (732)
-.-.-.++.-++|.--++|..+....+ +...-.-+++.+..+....+++.||+|.
T Consensus 92 ~~l~~~Ieep~~g~L~lrf~Ye~~~p~~~~~~~~~~e~~ksaY~~ad~dTvr~IRe~~ 149 (151)
T d2ffsa1 92 GSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRF 149 (151)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEECSCC--CCCCCBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEccCCCCeEEEEEEEEcCCCCCCcchhhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 233335655456655566654443211 1111234566666777778888888875
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