Citrus Sinensis ID: 004767

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730--
MGSSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLITSIGAFKVSTFL
cccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccEEEEEcccccccccccccEEEEEEcccccccHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEccccccHHHHHHccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEEccEEcccccccccccEEEEccccccccHHHHHHHHHHHHccccHHcccccccccEEEEEEEEccEEEEEEEEEcccccccccccccccHHHHcccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEEEEEEccccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEEEEHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccc
mgssngqrlgitepislagptdddlMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFtfgsyrlgvhgpgadidtlcvgprhatreeDFFGELHQMLTempevtelhpvpdahvpvmkfKFSGVSIDLLYARLSLwvipedldisqdsilqNADEqtvrslngcrvtDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQlypnavpsmLVSRFFRVYtqwrwpnpvLLCAIeegslglqvwdprrnpkdkyhlmpiitpaypcmnssynvstsTLRIMMDEFQRGHEICEAMekneadvdwdtlfepftFFEAYKNYLRIdisaenaddlrnWKGWVESRLRQLTLKIERHTynmlqchphpgdfsdkskplyCSYFmglqrkqgvpvgegeqfDIRLTVKEFKQAVSMYTlrkpgmqiSVAHVtrrnlpnfvfpggvrpsrpskgtwdsRRALERKvsshtkpgaddgrkrkqtddnVDTHLrnakchatmpsssgefregspimstissssinlqfehmdanelagsnrekvennltdsirgsrnsvevsshngkvdgpmigdprnkglsfnssnskDAEKLAIEKImsgpyvadqafplelDQLEDDLELKNQAKdfagstqnnslgscAVNIAAEATLtsmnggssssalspngglgeLEVLSANLITSIgafkvstfl
mgssngqrlgitepislagptdddlMRTRKLEKYLRdvnlyesqeeavsreevlgrLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEqtvrslngcrvtdqilrlvpkiqnfrtTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISaenaddlrnwKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPnfvfpggvrpsrpskgtwdsrralerkvsshtkpgaddgrkrkqtddnvdthlrnakchatmpsssgefreGSPIMSTISSSSINLQFEHMDANelagsnrekVENNltdsirgsrnsvevsshngkvdgpmigdprnkglsfnssnSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFagstqnnslgSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLItsigafkvstfl
MGSSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGspimstissssiNLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPleldqleddlelKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMnggssssalspngglgELEVLSANLITSIGAFKVSTFL
******************************LEKYLRDVNLYE****AVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPG********************************************************************************************************************************************************IMSGPYVADQAFPL*****************************CAVNI*************************ELEVLSANLITSIGAFKV****
***********TEP*SLAG*****LMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISR*******LLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQR**********QFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPG************************************************************************************************************************************************************************************************************************************VLSANLITSIGAFKVSTFL
MGSSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRP***********************************DDNVDTHLRNAKCHAT***********SPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTS***********PNGGLGELEVLSANLITSIGAFKVSTFL
*********GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGG********************************************************************************************************************************************************************************************************************************ELEVLSANLITSIGAFK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSSNGQRLGITEPISLAGPTDDDLMRTRKxxxxxxxxxxxxxxxxxxxxxEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHATMPSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVSSHNGKVDGPMIGDPRNKGLSFNSSNSKDAEKLAIEKIMSGPYVADQAFPLELDQLEDDLELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELEVLSANLITSIGAFKVSTFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query732 2.2.26 [Sep-21-2011]
Q54J73809 Poly(A) polymerase OS=Dic yes no 0.699 0.632 0.482 1e-140
Q6PCL9739 Poly(A) polymerase gamma yes no 0.643 0.637 0.449 1e-120
Q9BWT3736 Poly(A) polymerase gamma yes no 0.643 0.639 0.447 1e-120
Q61183739 Poly(A) polymerase alpha no no 0.629 0.623 0.467 1e-118
P51003745 Poly(A) polymerase alpha no no 0.640 0.629 0.462 1e-118
P25500739 Poly(A) polymerase alpha no no 0.629 0.623 0.467 1e-118
Q9NRJ5636 Poly(A) polymerase beta O no no 0.733 0.844 0.414 1e-116
Q9WVP6641 Poly(A) polymerase beta O no no 0.740 0.845 0.406 1e-115
P51004715 Poly(A) polymerase alpha- N/A no 0.651 0.667 0.447 1e-114
O42617558 Poly(A) polymerase PAPalp N/A no 0.557 0.731 0.460 1e-111
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function desciption
 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/543 (48%), Positives = 341/543 (62%), Gaps = 31/543 (5%)

Query: 9   LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKI 68
           LG+TEPIS A P+  D   + +LE  L   NL+ES EE+  REE+LG+L+QIV+ W K++
Sbjct: 53  LGVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQV 112

Query: 69  SRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLT 128
           S  KG  +Q   E  AKIFTFGSYRLGVHGPG+DIDTLCVGP+H  R  DFF +L  +L 
Sbjct: 113 SLKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRS-DFFDDLSDILK 171

Query: 129 EMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDL-DISQDSILQNADEQT 187
             PE+TE   V DA VPV+   FSG+ IDL+YA+L+L  IPE+L D+  +S L+N DE++
Sbjct: 172 VHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKS 231

Query: 188 VRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 247
           + SLNGCRVTDQIL+LVP I NFR  LRC++ WA RRG+YSN+ GFLGG++WALL ARIC
Sbjct: 232 ILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARIC 291

Query: 248 QLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS-LGLQVWDPRRNPKDKYHLMPII 306
           QLYPN+ PS ++ RFF+VY  W+WP P+LLC I+EG  LG +VW+P+R   DK HLMPII
Sbjct: 292 QLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPII 348

Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 366
           TPAYP MNS+YNVS STL++M  EF RG EI   +E  E    W  L E   FF  Y  Y
Sbjct: 349 TPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRYSFY 406

Query: 367 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK----SKP-- 420
           + ID  + N +D R W+GW+ES+LR L   +E  T  M    P+P  F++     + P  
Sbjct: 407 IEIDCYSMNEEDSRKWEGWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNLHKANNPDQ 465

Query: 421 LYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVTRRN 477
           +  S+FMGL        G  +  D+   V EF   +  +   +P    M I V ++ ++ 
Sbjct: 466 ICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQ 525

Query: 478 LPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKC 537
           LP FV   G  P  P K T        +K SS  +P A    ++K   +N D  L + K 
Sbjct: 526 LPAFVKDEG--PEEPVKTT--------KKRSSTGEPSA---TRKKLKSENSDNKLNSPKS 572

Query: 538 HAT 540
             T
Sbjct: 573 PIT 575
Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 Back     alignment and function description
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query732
359490984757 PREDICTED: poly(A) polymerase-like [Viti 0.964 0.932 0.739 0.0
255567792770 Poly(A) polymerase alpha, putative [Rici 0.948 0.901 0.710 0.0
449439435748 PREDICTED: poly(A) polymerase-like [Cucu 0.942 0.922 0.689 0.0
356531174757 PREDICTED: poly(A) polymerase-like [Glyc 0.960 0.928 0.678 0.0
357521515822 Poly(A) polymerase [Medicago truncatula] 0.954 0.850 0.644 0.0
356522834757 PREDICTED: poly(A) polymerase-like [Glyc 0.964 0.932 0.659 0.0
357500153752 Poly(A) polymerase [Medicago truncatula] 0.960 0.934 0.647 0.0
147795652 1097 hypothetical protein VITISV_015447 [Viti 0.837 0.558 0.735 0.0
224135441512 predicted protein [Populus trichocarpa] 0.687 0.982 0.850 0.0
297850192716 nucleotidyltransferase family protein [A 0.896 0.916 0.642 0.0
>gi|359490984|ref|XP_002279968.2| PREDICTED: poly(A) polymerase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/714 (73%), Positives = 601/714 (84%), Gaps = 8/714 (1%)

Query: 3   SSNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVK 62
           +++GQRLGITEPISL GP + D+ +T++LEK+L    LYESQEEAVSREEVLGRLDQIVK
Sbjct: 10  NNSGQRLGITEPISLGGPNELDVTKTQELEKFLAAAGLYESQEEAVSREEVLGRLDQIVK 69

Query: 63  IWVKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGE 122
           IWVK ISRAKGLN+QL+QEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGE
Sbjct: 70  IWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGE 129

Query: 123 LHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQN 182
           LH+ML+EMPEVTELHPVPDAHVPVM+FKFSGVSIDLLYA+LSLWVIPEDLD+SQDSILQN
Sbjct: 130 LHKMLSEMPEVTELHPVPDAHVPVMRFKFSGVSIDLLYAKLSLWVIPEDLDVSQDSILQN 189

Query: 183 ADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALL 242
           ADEQTVRSLNGCRVTDQILRLVP IQNFRTTLR MRFWAKRRGVYSNVAGFLGGINWALL
Sbjct: 190 ADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRFMRFWAKRRGVYSNVAGFLGGINWALL 249

Query: 243 VARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHL 302
           VARICQLYPNA+PSMLVSRFFRVYTQWRWPNPV+LCAIEEG+LGLQVWDPR+ PKD++HL
Sbjct: 250 VARICQLYPNALPSMLVSRFFRVYTQWRWPNPVMLCAIEEGTLGLQVWDPRKYPKDRFHL 309

Query: 303 MPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEA 362
           MPIITPAYPCMNSSYNVS+STLRIM +EF+RG+EI E ME N+A  DW TL EP+ FFEA
Sbjct: 310 MPIITPAYPCMNSSYNVSSSTLRIMSEEFKRGNEISEVMEANKA--DWATLCEPYPFFEA 367

Query: 363 YKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLY 422
           YKNYL+I+I+AENADDLR WKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKS+P +
Sbjct: 368 YKNYLQIEIAAENADDLRKWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSRPFH 427

Query: 423 CSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFV 482
           C YFMGLQRKQGVP  EGEQFDIRLTV EFK +V MYTL KPGM+I V HV RRN+PNFV
Sbjct: 428 CCYFMGLQRKQGVPASEGEQFDIRLTVDEFKHSVGMYTLWKPGMEIHVIHVRRRNIPNFV 487

Query: 483 FPGGVRPSRPSKGTWDSRRALERKVSSHTK-PGADDGRKRKQTDDNVDTHLRNAKCHATM 541
           FPGGVRPSRP+K   + RR LE  VS+     GA+D +KRK+ D+NV+T+ RNAKC    
Sbjct: 488 FPGGVRPSRPTKVASERRRVLEPNVSTQAVLEGAEDSKKRKREDENVETNSRNAKCLVAA 547

Query: 542 PSSSGEFREGSPIMSTISSSSINLQFEHMDANELAGSNREKVENNLTDSIRGSRNSVEVS 601
            SSS E    +P++ST+++ SI  + + MD N L  + +EKVENN+   ++   NSVEV 
Sbjct: 548 ASSSHEVLSSNPLVSTVNACSI--KVDSMDINMLGKTRKEKVENNIEHGLKNLNNSVEVP 605

Query: 602 SHNGKVDGPMIGDPRNKGLSFNSSNSK--DAEKLAIEKIMSGPYVADQAFPLELDQLEDD 659
             NG+VDG +      K LS +  +    +AEK+AIEKIMSGPYV+ QAFP ELD+LEDD
Sbjct: 606 PQNGEVDGSVRCSHPIKTLSSSGGSPSSTEAEKIAIEKIMSGPYVSHQAFPGELDELEDD 665

Query: 660 LELKNQAKDFAGSTQNNSLGSCAVNIAAEATLTSMNGGSSSSALSPNGGLGELE 713
           +E KNQ KDF GST+ +S  S   N+A E  LT+ +G    + LSPNGGL ELE
Sbjct: 666 VEYKNQVKDFTGSTKGSSAESSKANVAEEP-LTTTSGTVPCTILSPNGGLEELE 718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255567792|ref|XP_002524874.1| Poly(A) polymerase alpha, putative [Ricinus communis] gi|223535837|gb|EEF37498.1| Poly(A) polymerase alpha, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449439435|ref|XP_004137491.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] gi|449521033|ref|XP_004167536.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356531174|ref|XP_003534153.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|357521515|ref|XP_003631046.1| Poly(A) polymerase [Medicago truncatula] gi|355525068|gb|AET05522.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356522834|ref|XP_003530048.1| PREDICTED: poly(A) polymerase-like [Glycine max] Back     alignment and taxonomy information
>gi|357500153|ref|XP_003620365.1| Poly(A) polymerase [Medicago truncatula] gi|355495380|gb|AES76583.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|147795652|emb|CAN61208.1| hypothetical protein VITISV_015447 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135441|ref|XP_002322074.1| predicted protein [Populus trichocarpa] gi|222869070|gb|EEF06201.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297850192|ref|XP_002892977.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338819|gb|EFH69236.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query732
TAIR|locus:2030943713 PAPS1 "poly(A) polymerase 1" [ 0.693 0.712 0.804 4.8e-229
TAIR|locus:2134113765 nPAP "nuclear poly(a) polymera 0.797 0.763 0.587 4.1e-184
TAIR|locus:2043560800 PAPS2 "poly(A) polymerase 2" [ 0.729 0.667 0.613 4.3e-180
DICTYBASE|DDB_G0288259809 papA "poly(A) polymerase" [Dic 0.699 0.632 0.482 1.3e-125
ZFIN|ZDB-GENE-030131-3507723 papola "poly(A) polymerase alp 0.666 0.674 0.461 2.9e-116
UNIPROTKB|Q9BWT3736 PAPOLG "Poly(A) polymerase gam 0.666 0.663 0.439 3.3e-115
ZFIN|ZDB-GENE-040426-1256744 papolg "poly(A) polymerase gam 0.669 0.658 0.458 3.9e-115
MGI|MGI:2442119739 Papolg "poly(A) polymerase gam 0.714 0.707 0.428 8.9e-113
RGD|1310337739 Papolg "poly(A) polymerase gam 0.688 0.682 0.439 1.1e-112
UNIPROTKB|F1NKG9737 PAPOLA "Uncharacterized protei 0.639 0.635 0.469 2.9e-112
TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2210 (783.0 bits), Expect = 4.8e-229, P = 4.8e-229
 Identities = 412/512 (80%), Positives = 454/512 (88%)

Query:     5 NGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIW 64
             NGQR G++EPIS+ GPT+ D+++TR+LEK+L+DV LYES+EEAV REEVLG LDQIVK W
Sbjct:     7 NGQRFGVSEPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILDQIVKTW 66

Query:    65 VKKISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELH 124
             +K ISRAKGLNDQLL EANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRE DFFGEL 
Sbjct:    67 IKTISRAKGLNDQLLHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREGDFFGELQ 126

Query:   125 QMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNAD 184
             +ML+EMPEVTELHPVPDAHVP+M FK +GVSIDLLYA+L LWVIPEDLD+SQDSILQNAD
Sbjct:   127 RMLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNAD 186

Query:   185 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 244
             EQTVRSLNGCRVTDQILRLVP IQNFRTTLRCMRFWAKRRGVYSNV+GFLGGINWALLVA
Sbjct:   187 EQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVA 246

Query:   245 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMP 304
             RICQLYPNA+P++LVSRFFRV+ QW WPN + LC+ +EGSLGLQVWDPR NPKD+ H+MP
Sbjct:   247 RICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMP 306

Query:   305 IITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 364
             IITPAYPCMNSSYNVS STLRIM  EFQRG+EICEAME N+AD  WDTLFEPF FFEAYK
Sbjct:   307 IITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKAD--WDTLFEPFAFFEAYK 364

Query:   365 NYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCS 424
             NYL+IDISA N DDLR WKGWVESRLRQLTLKIERH + ML CHPHP DF D S+PL+CS
Sbjct:   365 NYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERH-FKMLHCHPHPHDFQDTSRPLHCS 423

Query:   425 YFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFP 484
             YFMGLQRKQGVP  EGEQFDIR TV+EFK  V+ YTL  PGM+ISV H+ RR+LPNFVFP
Sbjct:   424 YFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFP 483

Query:   485 GGVRPSRPSKGTWDS-RRALERKVSSHTKPGA 515
             GGVRPS  SKGTWDS RR+  R  S+ + P A
Sbjct:   484 GGVRPSHTSKGTWDSNRRSEHRNSSTSSAPAA 515
GO:0003723 "RNA binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0043631 "RNA polyadenylation" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3507 papola "poly(A) polymerase alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BWT3 PAPOLG "Poly(A) polymerase gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2442119 Papolg "poly(A) polymerase gamma" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310337 Papolg "poly(A) polymerase gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKG9 PAPOLA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.841.1
hypothetical protein (512 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.01480064
hypothetical protein (740 aa)
    ••• 0.587
gw1.XII.1275.1
hypothetical protein (1455 aa)
   •••• 0.576
fgenesh4_pg.C_LG_XV000388
hypothetical protein (193 aa)
    • • 0.473
eugene3.00030785
hypothetical protein (770 aa)
     •• 0.430

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 0.0
PTZ00418593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 0.0
COG5186552 COG5186, PAP1, Poly(A) polymerase [RNA processing 1e-165
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 5e-47
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 6e-29
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 1e-10
cd0539749 cd05397, NT_Pol-beta-like, Nucleotidyltransferase 0.003
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information 
 Score =  591 bits (1527), Expect = 0.0
 Identities = 211/351 (60%), Positives = 272/351 (77%), Gaps = 3/351 (0%)

Query: 7   QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVK 66
           ++ G+T+PIS AGPT  DL  T  L ++L++  L+ES+EE+  REEVL +L+++VK WVK
Sbjct: 2   KQYGVTKPISTAGPTPADLELTDSLIEFLKEEGLFESEEESKKREEVLEKLNKLVKEWVK 61

Query: 67  KISRAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQM 126
           K+S  KG+ ++  + A  KIFTFGSYRLGVHGPG+DIDTLCV P+H TRE DFF   +++
Sbjct: 62  KVSEQKGMPERAAEAAGGKIFTFGSYRLGVHGPGSDIDTLCVAPKHVTRE-DFFSSFYEI 120

Query: 127 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 186
           L   PEVTEL PV DA VP++KFKF G+ IDLL+A L+L  +P+DLD+  DS+L+N DE+
Sbjct: 121 LKLRPEVTELVPVEDAFVPIIKFKFDGIEIDLLFASLALPRVPDDLDLLDDSLLRNLDEK 180

Query: 187 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 246
           +VRSLNGCRVTD+ILRLVP    FRT LR ++ WAKRRG+YSNV GFLGG+ WA+LVAR+
Sbjct: 181 SVRSLNGCRVTDEILRLVPNKDVFRTALRAIKLWAKRRGIYSNVLGFLGGVAWAILVARV 240

Query: 247 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 306
           CQLYPNA PS LV +FFR+++QW+WPNPVLL  IEEG L  +VWDPR  P D+YHLMPII
Sbjct: 241 CQLYPNASPSTLVRKFFRIFSQWQWPNPVLLKPIEEGPLNFRVWDPRLYPSDRYHLMPII 300

Query: 307 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPF 357
           TPAYP MNS++NV+ STL+++ +EF+RG EI   +   +A   W  LFEP 
Sbjct: 301 TPAYPSMNSTHNVTRSTLKVITEEFKRGLEITSEILLGKA--PWSDLFEPH 349

The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta- sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different. Length = 349
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information
>gnl|CDD|143387 cd05397, NT_Pol-beta-like, Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 732
KOG2245562 consensus Poly(A) polymerase and related nucleotid 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 100.0
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 99.97
PF04926157 PAP_RNA-bind: Poly(A) polymerase predicted RNA bin 99.97
KOG1906514 consensus DNA polymerase sigma [Replication, recom 99.96
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.78
KOG2277596 consensus S-M checkpoint control protein CID1 and 99.74
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.56
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.54
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 99.14
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.12
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 98.38
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.29
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 97.66
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.62
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.46
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.26
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 96.71
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 96.7
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.24
PF14091152 DUF4269: Domain of unknown function (DUF4269) 95.93
COG166997 Predicted nucleotidyltransferases [General functio 95.47
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 95.24
COG1708128 Predicted nucleotidyltransferases [General functio 93.81
PRK13746262 aminoglycoside resistance protein; Provisional 93.56
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 92.03
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 90.24
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 89.84
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 89.27
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 83.86
COG1665315 Predicted nucleotidyltransferase [General function 83.31
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 82.76
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-142  Score=1157.98  Aligned_cols=481  Identities=59%  Similarity=1.022  Sum_probs=462.2

Q ss_pred             CCccccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCc
Q 004767            5 NGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANA   84 (732)
Q Consensus         5 ~~~~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~   84 (732)
                      .++.||||+|||+++||++|.++|.+|+++|+++|+||++||..+|++||++|++||++||+++++++|++++++.+++|
T Consensus        11 ~~~~~Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~agg   90 (562)
T KOG2245|consen   11 STKSYGVTQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENAGG   90 (562)
T ss_pred             ccccccccCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeecc
Q 004767           85 KIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLS  164 (732)
Q Consensus        85 kI~~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~  164 (732)
                      +|+||||||||||+||||||+|||+|+|++|+ |||..|.++|+++++|++|++|++|+||||||+|+||+|||+||+++
T Consensus        91 kIftfGSYRLGVhg~GADIDtLcV~Prhv~R~-DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllfArL~  169 (562)
T KOG2245|consen   91 KIFTFGSYRLGVHGPGADIDTLCVGPRHVSRS-DFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLFARLA  169 (562)
T ss_pred             eEEeccceeecccCCCCCcceeeeccccccHH-HHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeeehhcc
Confidence            99999999999999999999999999999995 99999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHcCChhhHHHHHHHHHHHHHHcCCCCCCCCCcChHHHHHHHH
Q 004767          165 LWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA  244 (732)
Q Consensus       165 ~~~ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RgIysn~~G~LGG~swalLVa  244 (732)
                      +++||+++||+|+++|+++||+|+||||||||||+||+|||+.+.||.+|||||+|||+||||+|.+|||||++||||||
T Consensus       170 l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVA  249 (562)
T KOG2245|consen  170 LPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVA  249 (562)
T ss_pred             cccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHHhccCCCCCceeecccccCCCCccccCCCCCCCCCCCceeEeCCCCCCCCcccccChhhH
Q 004767          245 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTL  324 (732)
Q Consensus       245 ~vcQlyPnas~~~LL~~FF~~Ys~wdW~~pV~l~~i~~G~l~~~vWdP~~~~~dr~hlMpIiTP~~P~~Nsa~NVs~sTl  324 (732)
                      |+||+||||++++|+.+||.+|++|+||+||+|+.+++|.++++||||+.|+.||||+|||||||||+||+|||||+||+
T Consensus       250 RiCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~  329 (562)
T KOG2245|consen  250 RICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTL  329 (562)
T ss_pred             HHHccCCCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhccceEEEEeeecChhhhhhhhhHHHHHHHHHHHHHhhccccc
Q 004767          325 RIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNM  404 (732)
Q Consensus       325 ~vI~~EF~RA~~Il~~i~~~~~~~~W~~Lfep~~Ff~~Yk~yL~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~  404 (732)
                      ++|.+||+||++||++|+.++.  +|.+|||+++||.+|||||+|+++|.++|++.+|.||||||+|+|+.+||++ ..+
T Consensus       330 ~Vi~~Ef~~g~~I~~~i~~~k~--~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~-~~i  406 (562)
T KOG2245|consen  330 KVITEEFKRGLEICDDIELNKL--DWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERN-QVI  406 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--cHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhh-cce
Confidence            9999999999999999999998  9999999999999999999999999999999999999999999999999996 467


Q ss_pred             eeeccCCCCCCCCCC-----CceEEEEEeeEecCCCCCCCCcccchHHHHHHHHHHHH----hhccCCCC--cEEEEEEe
Q 004767          405 LQCHPHPGDFSDKSK-----PLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVS----MYTLRKPG--MQISVAHV  473 (732)
Q Consensus       405 l~~hp~P~~f~~~~~-----~~~~~ffIGL~~~~~~~~~~~~~~Dl~~~v~eF~~~v~----~~~~~~~~--m~i~v~~v  473 (732)
                      +.|||+|+.|.++..     .|...+||||...+.      .++||+..+++|...++    .++.++.|  |++.+.|+
T Consensus       407 ~~ahp~P~~f~~~~~~~~~~~~~~~~~igl~~~e~------~~~Dlt~~iq~f~~~v~~q~~~~~~~~~g~~~~~~~~~~  480 (562)
T KOG2245|consen  407 LIAHPNPKKFKDTYNCPLEEDPESLWFIGLEFDEN------VKIDLTKDIQSFKKNVERQAVNLTLIKAGCDVEIDFGHV  480 (562)
T ss_pred             EEecCCcccccccccCCcccchhHhhhhccccccc------ccchhhhhHHHhhhhhhhcceeeeeeecccccccccccc
Confidence            899999999987642     356679999987653      34999999999999888    67778899  77888899


Q ss_pred             cCCCCCCccCCCCCCCCCCCCC
Q 004767          474 TRRNLPNFVFPGGVRPSRPSKG  495 (732)
Q Consensus       474 kr~~LP~~v~~~~~~~~~~~~~  495 (732)
                      ||++|+.++++...+..|..+.
T Consensus       481 krr~l~~~~~~~~l~~~k~~~~  502 (562)
T KOG2245|consen  481 KRRSLIQTITKEFLRLCKQYKK  502 (562)
T ss_pred             cccccccccCHHHhhHHHhhcc
Confidence            9999999999998888775553

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>COG1665 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
1q79_A514 Crystal Structure Of Mammalian Poly(A) Polymerase L 1e-118
1q78_A514 Crystal Structure Of Poly(A) Polymerase In Complex 1e-118
1f5a_A513 Crystal Structure Of Mammalian Poly(A) Polymerase L 1e-112
1fa0_A537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 1e-103
2hhp_A530 Structure Of Yeast Poly(A) Polymerase In A Closed C 1e-102
2o1p_A546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 1e-102
2q66_A525 Structure Of Yeast Poly(A) Polymerase With Atp And 1e-101
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/478 (46%), Positives = 304/478 (63%), Gaps = 14/478 (2%)
Query: 10  GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKIS 69
           GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+ +VK W+++IS
Sbjct: 21  GITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80
Query: 70  RAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 129
            +K L   +++    KIFTFGSYRLGVH  GADID LCV PRH  R  DFF   +  L  
Sbjct: 81  ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139
Query: 130 MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 189
             EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRXIR 199
Query: 190 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 249
           SLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA+LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL 259
Query: 250 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 309
           YPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHLMPIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319
Query: 310 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 369
           YP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377
Query: 370 DISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCS 424
             SA        W G VES++R L   +E++ +  L     Q  P P +  DK +     
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTM 436
Query: 425 YFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRNL 478
           + +GL  K+     E    D+   ++ F   V    +     +  M+I+  HV R+ L
Sbjct: 437 WVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 0.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 0.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-14
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 1e-11
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 6e-11
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 2e-07
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 5e-07
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 7e-07
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 4e-06
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query732
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.26
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.14
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 97.96
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.07
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.03
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 96.92
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 96.87
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 96.42
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 94.08
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 93.85
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 93.53
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 91.89
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 90.0
1jaj_A174 DNA polymerase beta-like protein; CIS peptide, vir 89.96
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 87.68
1jms_A381 Terminal deoxynucleotidyltransferase; polymerase; 82.52
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A* Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 732
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 6e-91
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 4e-86
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 4e-85
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 1e-82
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 1e-38
d2q66a3178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 8e-37
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 1e-19
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  280 bits (717), Expect = 6e-91
 Identities = 100/195 (51%), Positives = 133/195 (68%), Gaps = 1/195 (0%)

Query: 10  GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKIS 69
           GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+ +VK W+++IS
Sbjct: 3   GITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 62

Query: 70  RAKGLNDQLLQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 129
            +K L   +++    KIFTFGSYRLGVH  GADID LCV PRH  R  DFF   +  L  
Sbjct: 63  ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDR-SDFFTSFYDKLKL 121

Query: 130 MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 189
             EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D + +R
Sbjct: 122 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 181

Query: 190 SLNGCRVTDQILRLV 204
           SLNGCRVTD+IL LV
Sbjct: 182 SLNGCRVTDEILHLV 196
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query732
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 100.0
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 100.0
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d2q66a3178 Poly(A) polymerase, PAP, C-terminal domain {Baker' 99.96
d1q79a3134 Poly(A) polymerase, PAP, C-terminal domain {Cow (B 99.96
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.9
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.26
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.0
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 97.6
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.46
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 96.72
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 96.62
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 95.95
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 95.77
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.41
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 94.39
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 93.5
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 91.77
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 80.26
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-52  Score=416.43  Aligned_cols=196  Identities=51%  Similarity=0.877  Sum_probs=192.6

Q ss_pred             cccccCCCCCCCCChHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhccCcEEE
Q 004767            8 RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQIVKIWVKKISRAKGLNDQLLQEANAKIF   87 (732)
Q Consensus         8 ~~Gvt~Pis~~~Pt~~D~~~t~eL~~~L~~~~l~pS~eE~~~R~~VL~~L~~ivk~wv~~v~~~~g~~~~~~~~~~~kI~   87 (732)
                      |||||+|||+++||+.|++.+++|+++|+++++|||+||..+|++||.+|++++++|+++++.++|++++.+..++++|+
T Consensus         1 ~~GvT~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~ps~ee~~~R~~vl~~L~~lv~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (196)
T d1q79a2           1 HYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIF   80 (196)
T ss_dssp             CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEE
T ss_pred             CCCCCCCcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhccCCcEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeecCCCCCCCCceEEeecCCCCCchhhHHHHHHHHHhcCCCceeeEeecCCcccEEEEEecCeeeeEEeeeccccc
Q 004767           88 TFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWV  167 (732)
Q Consensus        88 ~FGSy~lGv~~p~SDID~lcv~P~~v~r~~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~  167 (732)
                      |||||++|+|+|+||||++|++|.+++++ +||..|+++|++.+.++++++|++|+||||||+++||+|||+||+++...
T Consensus        81 ~FGS~~lgv~~p~SDID~~~i~p~~~~~~-~ff~~l~~~L~~~~~v~~v~~I~~A~VPiiK~~~~gi~iDlsfa~l~~~~  159 (196)
T d1q79a2          81 TFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQT  159 (196)
T ss_dssp             EEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSS
T ss_pred             EeccccccccCCCCCccEEEecCCcCCHH-HHHHHHHHHHhcCCCcceEEEeccccccEEEEEEcCeeEeehhhhcccCC
Confidence            99999999999999999999999999985 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchhhhccchhhhhhhcchhhhHHHHHHHc
Q 004767          168 IPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLV  204 (732)
Q Consensus       168 ip~~ldl~~~~lL~~lde~svrSLNG~Rvtd~IlrlV  204 (732)
                      +|+++++.++++|+++|++++|||||+|||++|+++|
T Consensus       160 ~p~~l~l~~~~lL~~ld~~~~rslNG~Rv~~~il~lV  196 (196)
T d1q79a2         160 IPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV  196 (196)
T ss_dssp             BCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSS
T ss_pred             CCcccccCChHHHhcCChhhhhhhccHHHHHHHHhhC
Confidence            9999999999999999999999999999999999986
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure