Citrus Sinensis ID: 004847

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------
MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV
ccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccHHHcccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEccccHHHHHcccccccEEEEEccccccEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEcEEEEEccccccEEccccccccEEEEEEEEEcccccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEEEccEEEEEccccHHHHHcccccEEEEcccccHHHHHHHHcccccccccccccccccEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHccccccHHHHHcccccccccccHHHccccEEEEccccccccccccccccccHHHHccccHcHccccHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEccccccEEEEEEccccHHHHHcccccccEEEEcccccccccEEEEEEEEEcccccHHHccccccEEEEEcccEccccEEEEEEcccccccEEEcccccccEEEEEEccccccccEEEEEEEEccccccEEEEEEEEEEEccccHHHEEEEEEccccHHHHcccEEEcccccccEEEEEEcccEEEEccccHHHHHHHccccccccccccccccccccEEEcHHHHHHHcHEEEEEEcccccccccccccHHccccccccccccccHHHHHHHcccccccccccccccEEccccccccccccHHHHHHcccccccccccccccccHccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccc
MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVmrgedennhnvdnhlssgteerednddMENELKLTKSSLRRCANLIQLVYgkststsetLSKEvqdsiegeesdedeffkpkvegnklregldsgivntddcskiksyedLKSWKQEEVYESIRDrfvtgdwskaaqrnqvskgksedddsddavygdyedletgekqegqrkdnsgcegienedESAVEERRLKKLSLRAKfdvqydgsespeeemnekdgakfhcgqpneiglVDQMKEEIEFRKQMNIaelndldevtrlelegfrtgtylrmeihdvpfemveyfdpchpvlvggiglgeqNVGYMQVRLKRHRWWHkkvlksrdpiivsigwrrfqtipvyaiedrsgrhrmlkytpehmhclatfwgplappqtgvVAVQNLSNNQASFRIAATAVVLEFNHevkikkkiklvgypckifkkTALIKDMFTSDLEVAQCegkevrtvsgirGQVKKAAKEeignqpkrkggqpregiarctfedrilMSDIVFMRgwadveiprfynplttalqprDKIWQGMKTVAELRREHnlsipvnknslykpigrtprkfnplvipkslqaalpfeskpkdipgrkrpllenrravvmepherKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV
MKIALWNVLNLMMESILEKLSLDMVLILVIGRIhmkramtttVMRVRMMTTtvmrgedennhnvdnhlssgteeredndDMENELKLTKSSLRRCANLIQLvygkststsetlskevqdsiegeesdedeffkpkvegnklregldsgivntddcskiksyedlkswkqeeVYESIRdrfvtgdwskaaqrnqvskgksedddsddaVYGDYedletgekqegqrkdnsgcegienedesaVEERRLKklslrakfdvqydgsespeeemnekdgakfhcGQPNEIGLVDQMKEEIEFRKQMNiaelndldevtrLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRhrwwhkkvlksrdpiivsigwrrfqtipvyaiedrsGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFnhevkikkkiklvgypcKIFKKTALIKDMFTSDLEVAQCegkevrtvsgirgqvkkaakeeignqpkrkggqpregiaRCTFEDRILMSDIVFMRGWADVEIPRFYNplttalqprdkIWQGMKTVAELRrehnlsipvnknslykpiGRTPRKFNPLVIPKSLqaalpfeskpkdipgrkrpLLENRRavvmepherkvHVLFQQLQLIRNEKMKkrklkqqhrkkeieaerakdeqltrkrqreerreryreqdklmkkirrhsev
MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAmtttvmrvrmmtttvmrGEDENNHNVDNHLSSGTeerednddmeneLKLTKSSLRRCANLIQLVYGkststsetlskeVQdsiegeesdedeFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQvskgksedddsddavygdyedLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEkmkkrklkqqhrkkEIEAERAKDeqltrkrqreerreryreqDKLMKKIRRHSEV
**IALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTT****************************************RRCANLIQLVYG********************************************IVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDW****************************************************************************************************IGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVS****************************IARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIP************************************RKVHVLFQQLQLI**********************************************************
*KIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVM***************************************************ANLIQLVYGKST************************************************SKIKSYEDLKSWKQEEVYESIRDRFV********************************************************************************************DGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKE*IGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTAL*****************R**NLSI****************KFNPLVIPKSLQAALP**************************HERKVHVLFQQLQLIR*********************************************************
MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVMRGEDENNHNVDNHLS*************NELKLTKSSLRRCANLIQLVYGKS************************FFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWS*******************DAVYGDYEDL******************************RLKKLSLRAKFDVQ**************DGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRG**********************EGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKM***************************************QDKL**********
MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTV**************************DME*********LRRCANLIQLVYGKSTSTSETLS**************DEFFKPKVE**********GIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWS*********************VYGDY*DLET***********************************RAKFDVQYDG**********************EIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKE**************EGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD****KRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQD************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKIALWNVLNLMMESILEKLSLDMVLILVIGRIHMKRAMTTTVMRVRMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDKLMKKIRRHSEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query727 2.2.26 [Sep-21-2011]
Q146921282 Ribosome biogenesis prote yes no 0.675 0.382 0.470 1e-133
O946531121 Ribosome biogenesis prote yes no 0.819 0.531 0.384 1e-112
Q089651183 Ribosome biogenesis prote yes no 0.817 0.502 0.354 2e-99
A8MV67101 Putative BMS1-like protei no no 0.137 0.990 0.643 1e-36
A8MXU9101 Putative BMS1-like protei no no 0.137 0.990 0.623 1e-35
A8MTN0101 Putative BMS1-like protei no no 0.137 0.990 0.613 1e-34
Q5SWD9803 Pre-rRNA-processing prote no no 0.359 0.325 0.235 9e-19
Q5XGY1815 Pre-rRNA-processing prote N/A no 0.330 0.294 0.249 1e-18
Q9VP47814 Pre-rRNA-processing prote no no 0.298 0.266 0.259 9e-15
Q2NL82804 Pre-rRNA-processing prote no no 0.239 0.216 0.257 5e-14
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/546 (47%), Positives = 336/546 (61%), Gaps = 55/546 (10%)

Query: 154  DCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYE 213
            DCS+    E    W  EEV  SIRD FVTG W       +V          D+ +YGD+E
Sbjct: 733  DCSRF-LVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLA-------EDEELYGDFE 784

Query: 214  DLETGEKQEGQRKDNSGCEGIE---------NEDESAVEERRLKKLSLRAKFDVQYDGSE 264
            DLETG+  +G+   N+  E IE         +E+ESA ++   KK  L+  FD +YD  E
Sbjct: 785  DLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDEGE 844

Query: 265  SPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTG 324
            S                        D +K E++ + Q+N AE  D D+  R++ EGFR G
Sbjct: 845  ST---------------------YFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPG 883

Query: 325  TYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPI 384
             Y+R+EI +VP E V+ FDP +P+++GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPI
Sbjct: 884  MYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPI 942

Query: 385  IVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNN 444
            I S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FWGP+ P  TG +A+Q++S  
Sbjct: 943  IFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGI 1002

Query: 445  QASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVR 504
               FRIAAT VVL+ +  +KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG  +R
Sbjct: 1003 MPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIR 1062

Query: 505  TVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRF 564
            TVSGIRGQ+KKA +               EG  R +FED++LMSDIVFMR W  V IP F
Sbjct: 1063 TVSGIRGQIKKALRAP-------------EGAFRASFEDKLLMSDIVFMRTWYPVSIPAF 1109

Query: 565  YNPLTTALQP--RDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKS 622
            YNP+T+ L+P      W GM+T  +LR  H + +  NK+SLYKPI R  + FN L IPK+
Sbjct: 1110 YNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKA 1169

Query: 623  LQAALPFESKPK-DIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQ 681
            LQ ALPF++KPK      K P    R AV+ EPHERK+  L   L  + ++KMKK K ++
Sbjct: 1170 LQKALPFKNKPKTQAKAGKVPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQR 1229

Query: 682  QHRKKE 687
                KE
Sbjct: 1230 HLHNKE 1235
May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.
Homo sapiens (taxid: 9606)
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2 Back     alignment and function description
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1 Back     alignment and function description
>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5 SV=1 Back     alignment and function description
>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5 SV=1 Back     alignment and function description
>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5 SV=1 Back     alignment and function description
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1 Back     alignment and function description
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query727
224133372 1181 predicted protein [Populus trichocarpa] 0.874 0.538 0.703 0.0
359477919 1139 PREDICTED: ribosome biogenesis protein B 0.844 0.539 0.669 0.0
298205174 1305 unnamed protein product [Vitis vinifera] 0.894 0.498 0.656 0.0
356544500 1181 PREDICTED: ribosome biogenesis protein B 0.818 0.503 0.663 0.0
357473081 1200 Ribosome biogenesis protein BMS1-like pr 0.854 0.517 0.667 0.0
357473083 1175 Ribosome biogenesis protein BMS1-like pr 0.854 0.528 0.667 0.0
356541129 1176 PREDICTED: ribosome biogenesis protein B 0.804 0.497 0.665 0.0
449444194 1198 PREDICTED: ribosome biogenesis protein B 0.830 0.504 0.663 0.0
242041043 1184 hypothetical protein SORBIDRAFT_01g03627 0.888 0.545 0.605 0.0
297848950 1148 hypothetical protein ARALYDRAFT_470695 [ 0.818 0.518 0.623 0.0
>gi|224133372|ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|222837435|gb|EEE75814.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/665 (70%), Positives = 537/665 (80%), Gaps = 29/665 (4%)

Query: 69   SSGTEEREDNDDMENELKLTKSSLRRC-----ANLIQLVYGKSTSTSETLSKEVQDSIEG 123
            S  +EE  D +DM N  K  +S + R       NL+Q VYGKS ST      E QD  E 
Sbjct: 540  SEFSEEDRDEEDMGNISKWKESLVDRTFSKQNNNLMQRVYGKSASTP---INEKQDGSED 596

Query: 124  EESDEDEFFKPKVEGNK-LREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVT 182
            EESD DEFFK K EGNK LREG D   V+ D+CSK  +Y DLK+WK EE+YESIRDRFVT
Sbjct: 597  EESD-DEFFKLKGEGNKKLREGFDVENVDADECSKFTNYSDLKNWKDEEIYESIRDRFVT 655

Query: 183  GDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAV 242
            GDWSKAAQRN++     EDD+  D+VYGD+EDLETGEK    +K+ SG   ++ EDE   
Sbjct: 656  GDWSKAAQRNKLPTANDEDDE--DSVYGDFEDLETGEKHGNHQKEESGNVSMQKEDELE- 712

Query: 243  EERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQM 302
            E+R+LKKL+L               EE++EK GAKFH GQ NE G +D++KEEIE RKQ 
Sbjct: 713  EQRKLKKLALH--------------EEVDEKHGAKFHRGQANESGYIDKLKEEIEIRKQR 758

Query: 303  NIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGY 362
            NIAELNDLDE TRLE+EGF+TGTYLR+E+HDVPFEMVE+FDPC P+LVGGIGLGE++VGY
Sbjct: 759  NIAELNDLDEETRLEIEGFQTGTYLRLELHDVPFEMVEHFDPCDPILVGGIGLGEEHVGY 818

Query: 363  MQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLA 422
            MQ RLKRHRW H+KVLK++DP+I SIGWRR+QT PVYAIEDR+GRHRMLKYTPEHMHCLA
Sbjct: 819  MQARLKRHRW-HRKVLKTKDPVIFSIGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLA 877

Query: 423  TFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKT 482
            TFWGPLAPP TGVVAVQNL+NNQASFRI ATAVVLEFNH  K+ KK+KLVG+PCKIFKKT
Sbjct: 878  TFWGPLAPPNTGVVAVQNLANNQASFRITATAVVLEFNHAAKMVKKVKLVGHPCKIFKKT 937

Query: 483  ALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFE 542
            ALI +MFTSDLEVA+ EG  VRTVSGIRGQVKKAAK+EIGNQP +KGG PREGIARCTFE
Sbjct: 938  ALIMNMFTSDLEVARFEGAAVRTVSGIRGQVKKAAKDEIGNQPTKKGGAPREGIARCTFE 997

Query: 543  DRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNS 602
            DRILMSDIVF+R W  VE P FYNPLTTALQPR+K WQGMKTVAELRREHNL IPVNK+S
Sbjct: 998  DRILMSDIVFLRAWTQVEAPCFYNPLTTALQPRNKTWQGMKTVAELRREHNLPIPVNKDS 1057

Query: 603  LYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVL 662
            LY+PI RTP+KFNPLVIPKSLQA LPFESKPKDIP + R  LE RRAVVMEP ERKVH L
Sbjct: 1058 LYRPIERTPKKFNPLVIPKSLQATLPFESKPKDIP-KGRATLERRRAVVMEPDERKVHAL 1116

Query: 663  FQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIR 722
             QQL+LI N+KM+KRKLK+   + ++EAE+AKDE+L+RKR+REERRERYR Q+KL KK R
Sbjct: 1117 VQQLRLITNDKMRKRKLKKDQERNKLEAEKAKDEELSRKRKREERRERYRVQEKLKKKAR 1176

Query: 723  RHSEV 727
            R+S+ 
Sbjct: 1177 RNSDA 1181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477919|ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|298205174|emb|CBI17233.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544500|ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357473081|ref|XP_003606825.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507880|gb|AES89022.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357473083|ref|XP_003606826.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507881|gb|AES89023.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356541129|ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449444194|ref|XP_004139860.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|242041043|ref|XP_002467916.1| hypothetical protein SORBIDRAFT_01g036270 [Sorghum bicolor] gi|241921770|gb|EER94914.1| hypothetical protein SORBIDRAFT_01g036270 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|297848950|ref|XP_002892356.1| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata] gi|297338198|gb|EFH68615.1| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query727
TAIR|locus:20330501147 AT1G06720 [Arabidopsis thalian 0.685 0.434 0.598 1.9e-179
ZFIN|ZDB-GENE-060720-21221 bms1l "BMS1-like, ribosome ass 0.675 0.402 0.448 8.7e-111
UNIPROTKB|E1BPP21290 BMS1 "Uncharacterized protein" 0.590 0.332 0.489 8e-110
UNIPROTKB|F1PKN21287 BMS1 "Uncharacterized protein" 0.594 0.335 0.479 5.6e-109
UNIPROTKB|F1NH691304 BMS1 "Uncharacterized protein" 0.595 0.332 0.484 1.9e-108
UNIPROTKB|Q146921282 BMS1 "Ribosome biogenesis prot 0.590 0.334 0.487 2.7e-107
ASPGD|ASPL00000059951179 AN6334 [Emericella nidulans (t 0.680 0.419 0.421 5.4e-102
FB|FBgn00366861159 CG7728 [Drosophila melanogaste 0.748 0.469 0.392 3.1e-99
DICTYBASE|DDB_G02878911205 bms1l "BMS1-like ribosome biog 0.715 0.431 0.396 5.8e-98
POMBASE|SPBC31E1.061121 bms1 "GTP binding protein Bms1 0.606 0.393 0.439 1.8e-97
TAIR|locus:2033050 AT1G06720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1520 (540.1 bits), Expect = 1.9e-179, Sum P(2) = 1.9e-179
 Identities = 306/511 (59%), Positives = 364/511 (71%)

Query:   217 TGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKF--DVQYDGSESPEE--EMNE 272
             TG+  +   +D +   G E ED+    +    +   + K   +++   +E+ +E  E+ E
Sbjct:   643 TGDWSKAALRDKNLGTGGEGEDDELYGDFEDLETGEKHKSHENLESGANENEDEDAEVVE 702

Query:   273 KDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIH 332
             +DG      Q +E G  D++KE  E  KQ N  E NDLDE TR+EL GFRTGTYLR+EIH
Sbjct:   703 RDGNNPR-SQADEPGYADKLKEAQEITKQRNELEYNDLDEETRIELAGFRTGTYLRLEIH 761

Query:   333 DVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRR 392
             +VP+EMVE+FDPCHP+LVGGIG GE NVGYMQ RLK+HRW HKKVLK+RDPIIVSIGWRR
Sbjct:   762 NVPYEMVEFFDPCHPILVGGIGFGEDNVGYMQARLKKHRW-HKKVLKTRDPIIVSIGWRR 820

Query:   393 FQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAA 452
             +QTIPV+AIEDR+GRHRMLKYTPEHMHCLA+FWGPL PP TG VA QNLSNNQA FRI A
Sbjct:   821 YQTIPVFAIEDRNGRHRMLKYTPEHMHCLASFWGPLVPPNTGFVAFQNLSNNQAGFRITA 880

Query:   453 TAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQ 512
             T+VVLEFNH+ +I KKIKLVG PCKI KKTA IKDMFTSDLE+A+ EG  VRTVSGIRGQ
Sbjct:   881 TSVVLEFNHQARIVKKIKLVGTPCKIKKKTAFIKDMFTSDLEIARFEGSSVRTVSGIRGQ 940

Query:   513 VKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTAL 572
             VKKA K  + N+ +       EGIARCTFED+I MSD+VF+R W  VE+P+FYNPLTTAL
Sbjct:   941 VKKAGKNMLDNKAE-------EGIARCTFEDQIHMSDMVFLRAWTTVEVPQFYNPLTTAL 993

Query:   573 QPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESK 632
             QPRDK W GMKT  ELRRE N+ IPVNK+SLYK I R  +KFNPL IPK L+  LPF SK
Sbjct:   994 QPRDKTWNGMKTFGELRRELNIPIPVNKDSLYKAIERKQKKFNPLQIPKRLEKDLPFMSK 1053

Query:   633 PKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEXXXXXXXXXXXXXXEIEAER 692
             PK+IP RKRP LE++RAV+MEP ERK H + QQ QL+++               E EAE+
Sbjct:  1054 PKNIPKRKRPSLEDKRAVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEAEK 1113

Query:   693 AKDXXXXXXXXXXXXXXXXXXXDKLMKKIRR 723
             AK+                   DK  KK RR
Sbjct:  1114 AKNEEINKKRRREERRDRYREEDKQKKKTRR 1144
GO:0003924 "GTPase activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0042254 "ribosome biogenesis" evidence=IEA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
ZFIN|ZDB-GENE-060720-2 bms1l "BMS1-like, ribosome assembly protein (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPP2 BMS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKN2 BMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH69 BMS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q14692 BMS1 "Ribosome biogenesis protein BMS1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000005995 AN6334 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0036686 CG7728 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287891 bms1l "BMS1-like ribosome biogenesis protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC31E1.06 bms1 "GTP binding protein Bms1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query727
COG51921077 COG5192, BMS1, GTP-binding protein required for 40 1e-111
pfam04950293 pfam04950, DUF663, Protein of unknown function (DU 2e-81
COG5177769 COG5177, COG5177, Uncharacterized conserved protei 2e-13
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  361 bits (927), Expect = e-111
 Identities = 189/688 (27%), Positives = 323/688 (46%), Gaps = 68/688 (9%)

Query: 47   RMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDME----NELKLTKSSLRRCANLIQLV 102
                  +   ++ +N  V     S  +E E N   +    ++L  ++S  R   N+ ++ 
Sbjct: 447  TGKKGAINNEDESDNEEVAFDSDSQFDESEGNLRWKEGLASKLAYSQSGKRG-RNIQKIF 505

Query: 103  YGKSTSTSETL------SKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCS 156
            Y +S S  E +      S +  +S    + + ++FF      N+      S   N +   
Sbjct: 506  YDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANE------SISSNHEKLM 559

Query: 157  KIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLE 216
            + +  E  K W        ++ RF       + +  +      E  + +D    +     
Sbjct: 560  ESEFEELKKKWSS---LAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDN 616

Query: 217  TGEKQEGQRKDNSGCEGIENED-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDG 275
              E+  G        E  +  D E+  EE   KK  LR  F+++       E    EK  
Sbjct: 617  EMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELE-------ERGDPEK-- 667

Query: 276  AKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVP 335
                     ++    + K +IE + ++N +E   +   +R+ +EG+R G Y+R+ +  VP
Sbjct: 668  --------KDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVP 719

Query: 336  FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 395
             E V+ F+  +P+++GG+   E+ +G +Q R+KRHRW HKK+LK+ DP+I S+GWRRFQ+
Sbjct: 720  LEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQS 778

Query: 396  IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 455
            IPVY+++D   R+RMLKYTPEHMHC  +F+GP+ PP TG  AVQ+   +   FR+ A   
Sbjct: 779  IPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEKGD---FRVLALGT 835

Query: 456  VLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKK 515
            + + N + K+ KK+KLVGYP +I + T  ++DMFTSDLEV + EG  ++ VSG+RGQVK 
Sbjct: 836  ITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKG 895

Query: 516  AAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPR 575
                             + G  R  FE ++LMSDI+ +R +  VE+ R + P+   L   
Sbjct: 896  P--------------HGKNGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLGK- 940

Query: 576  DKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD 635
               W+G++ + E+R    L+      +                +P+ +++ LP + +   
Sbjct: 941  ---WRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLDKRSIA 997

Query: 636  IPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKD 695
            +          RR  +  P E +     +   +    K ++ K + +  ++  E E  K 
Sbjct: 998  VVS--------RRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKK 1049

Query: 696  EQLTRKRQREERRERYREQDKLMKKIRR 723
            E+   +R R+   + Y+E  K   K +R
Sbjct: 1050 EKEREQRIRKTIHDNYKEMAKKRLKKKR 1077

Length = 1077
>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663) Back     alignment and domain information
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 727
COG51921077 BMS1 GTP-binding protein required for 40S ribosome 100.0
PF04950297 DUF663: Protein of unknown function (DUF663); Inte 100.0
KOG1980754 consensus Uncharacterized conserved protein [Funct 100.0
COG5177769 Uncharacterized conserved protein [Function unknow 100.0
KOG1951115 consensus GTP-binding protein AARP2 involved in 40 99.52
KOG0461522 consensus Selenocysteine-specific elongation facto 94.93
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-125  Score=1026.13  Aligned_cols=572  Identities=32%  Similarity=0.563  Sum_probs=498.3

Q ss_pred             HHhhhcccc-ccCchhhhccCCCCCchhhccccc-cC-CC--CC--CCCCCCCCccccccCcccccCC-C-CCCCCCccc
Q 004847           85 LKLTKSSLR-RCANLIQLVYGKSTSTSETLSKEV-QD-SI--EG--EESDEDEFFKPKVEGNKLREGL-D-SGIVNTDDC  155 (727)
Q Consensus        85 ~~~~~~~~~-r~~nL~kLvYg~~~~~~~~~~~~~-e~-~~--e~--~~~~~~~fFk~~~~~~~~~e~~-~-~~~~~~~d~  155 (727)
                      +++|.|++. |..|+.+++|+++++|++|+..|+ ++ .+  ++  .++++++||++++..+.+  .. + ....+ -..
T Consensus       487 ~kl~~sqs~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~--~s~~~ek~~~-~~f  563 (1077)
T COG5192         487 SKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANES--ISSNHEKLME-SEF  563 (1077)
T ss_pred             hhhhhhhcccccccccceeccccCCHHHHHHHhccccccccccccccccCchhhhhhhhhcccc--cccchhhhch-hHH
Confidence            456666654 567999999999999999999998 31 11  12  346777899976544432  10 0 11111 012


Q ss_pred             ccccccccccCCCchHhHHHHhhhcccCccchhhhhccccCCCCCCCCCcccccCCCcccccCccccCCCCCCC-CC---
Q 004847          156 SKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNS-GC---  231 (727)
Q Consensus       156 ~~~~~~~~~~~W~~ee~~~sir~~FvTg~w~~~~~~d~~~~~~~~~~~~d~e~~GDFEDLEtge~~~~~~~~~~-~~---  231 (727)
                      +.+     ...|+   .++.|+.||.++...+.. ++      .++.. .|++.|+|||||..|.....+-+++ +.   
T Consensus       564 e~L-----~kkw~---s~~~lk~RF~~~~~lds~-eg------~EEl~-qd~E~gn~ed~~d~e~~~d~e~ees~G~s~t  627 (1077)
T COG5192         564 EEL-----KKKWS---SLAQLKSRFQKDATLDSI-EG------EEELI-QDDEKGNFEDLEDEENSSDNEMEESRGSSVT  627 (1077)
T ss_pred             HHH-----HHHHh---hHHHHHHHhhcccccccc-cc------hhhhh-hchhccCcccccccccccccchhhccCCccc
Confidence            233     57895   489999999998765321 22      11111 3445789999998776543221111 10   


Q ss_pred             --CC--CCccc-hHHHHHHHHHHHHHhhhhhcccCCCCCcchhhccccccccCCCCCCccchHHHHHHHHHHHHHhhHHH
Q 004847          232 --EG--IENED-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAE  306 (727)
Q Consensus       232 --~~--~e~~~-e~~~~k~~~kK~~lk~~F~~eyd~~~~~~~~~~~~~~~~~~~~e~~~~~~yd~~K~e~~~q~~~N~~e  306 (727)
                        ++  .++-+ +.+++.+++||++|+.+|+.+..+                 +++..+.+||+.+|+.+++|+.||+.|
T Consensus       628 ~~~~e~~~e~~~e~ErE~na~kKE~lr~~Fe~eer~-----------------d~e~~d~dwy~~eK~ki~~ql~inr~e  690 (1077)
T COG5192         628 AENEESADEVDYETEREENARKKEELRGNFELEERG-----------------DPEKKDVDWYTEEKRKIEEQLKINRSE  690 (1077)
T ss_pred             ccchhhccccchHHHhhhhhhhhhhhhcceeehhcc-----------------CccccccchHHHHHHHHHHHHhhhhhh
Confidence              11  11123 778999999999999999987753                 233455679999999999999999999


Q ss_pred             hcCCCHhHHHHhcCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEE
Q 004847          307 LNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIV  386 (727)
Q Consensus       307 f~~~d~~~R~~~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLif  386 (727)
                      |++|++++|+.++||++|+||||+|+.||.+||++|+|.+|||+|||||.|.++|+||++|+|||| |++|||++|||||
T Consensus       691 ~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW-hKKILKTNdPlif  769 (1077)
T COG5192         691 FETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIF  769 (1077)
T ss_pred             hhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH-HHHHhccCCCeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             EeeeeeeeeeeeeeeccCCccceeeeecCCCceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEEEecccCCeeEE
Q 004847          387 SIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIK  466 (727)
Q Consensus       387 siGwRRFqt~PIyS~~d~n~R~R~lKYtpehm~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~~Iv  466 (727)
                      |+|||||||+||||+.|+.+|+|||||||+||||.+|||||+++||||||++|+.   ..+|||+|+|+|.++|.+..||
T Consensus       770 S~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse---~g~frv~a~g~i~dv~~~~~lv  846 (1077)
T COG5192         770 SVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSE---KGDFRVLALGTITDVNGDAKLV  846 (1077)
T ss_pred             EechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEec---CCceEEEEeeeeEeccccHHHH
Confidence            9999999999999999999999999999999999999999999999999999984   4569999999999999999999


Q ss_pred             EeEEEeeeeeEEeecceEEeccCCChhhhccccCCeeEeccCccceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847          467 KKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL  546 (727)
Q Consensus       467 KKikLtG~P~KI~K~TAfIk~MF~s~lEV~kFkga~LrTksGiRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl  546 (727)
                      |||||+|||++|++||||||+||+|.+||++|+||+|+||||+||+||.|+              |.+|++||.|+++|+
T Consensus       847 kklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~--------------~k~g~yra~fe~kml  912 (1077)
T COG5192         847 KKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPH--------------GKNGEYRAVFEGKML  912 (1077)
T ss_pred             hhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCcc--------------CCCccchheeccchh
Confidence            999999999999999999999999999999999999999999999999999              579999999999999


Q ss_pred             ccCEEEEecccccccCcccccccccCCCCCCcccccccHHHHHHHcCCCCCCCCCCCCccccCCCCCCCCCCCChhhHhc
Q 004847          547 MSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAA  626 (727)
Q Consensus       547 ~sDiVfLrlw~rV~p~~fynpvt~~l~~~~~~W~gmrt~gelR~e~~i~~p~~~dS~Yk~ieR~~r~fnpl~iPk~Lq~~  626 (727)
                      |||||.||+|+||.+++||+||+|||+    .|+|+|.++|||...|+..|.++||.|..++|..++||.+.+|+.+|+.
T Consensus       913 msdii~lr~~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~~  988 (1077)
T COG5192         913 MSDIITLRCFVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESK  988 (1077)
T ss_pred             hhheeeEEeeeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHhHHhh
Confidence            999999999999999999999999997    6999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004847          627 LPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREE  706 (727)
Q Consensus       627 LPf~skpK~~~~~~~~~~~~~~avv~~p~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~e~~~~~~~ke~  706 (727)
                      |||+        +++.+++.||+++.-|.|++....+|..-++.+-|..+++++++-.++++.++.+|.|+++.+|.|+.
T Consensus       989 lp~~--------kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~ke~~~s~~r~k~~~i~k~e~er~qr~r~~ 1060 (1077)
T COG5192         989 LPLD--------KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060 (1077)
T ss_pred             CCcc--------hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9998        55678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 004847          707 RRERYREQDKLMKKIR  722 (727)
Q Consensus       707 ~K~~~r~~gk~~~~~~  722 (727)
                      +++.|...||++-++.
T Consensus      1061 ~~d~~~e~~kkr~kk~ 1076 (1077)
T COG5192        1061 IHDNYKEMAKKRLKKK 1076 (1077)
T ss_pred             HHHHHHHHHhhhhhcc
Confidence            9999999999976554

>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus Back     alignment and domain information
>KOG1980 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5177 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query727
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 67/516 (12%), Positives = 136/516 (26%), Gaps = 150/516 (29%)

Query: 42  TVMRVRMMTTTVMRGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQL 101
           T  R   M T +   + +  +N +   +     R        +L+     LR   N++  
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELRPAKNVL-- 154

Query: 102 VYG-----KSTSTSETL-SKEVQDSIE--------GEESDEDEFFKPKVEGNKLREGLDS 147
           + G     K+    +   S +VQ  ++           +  +   +      KL   +D 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDP 211

Query: 148 GIVNTDDCSK--IKSYEDLKSWK----QEEVYES----IRDRFVTGDWSKAAQRNQVSKG 197
              +  D S         +++      + + YE+    + +  V    +      +    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--V---QNA-----KAWNA 261

Query: 198 -----K----SEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLK 248
                K    +      D +        + +              +   DE         
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---------MTLT-PDEV-------- 303

Query: 249 KLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIG-LVDQMKEEIEFRKQMNIAEL 307
             SL  K+ +     + P E                 I   +       +  K +N  +L
Sbjct: 304 -KSLLLKY-LDCRPQDLPREV---LTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKL 355

Query: 308 NDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCH--------PVLVGGI---GLG 356
             + E +   LE               P E  + FD           P ++  +    + 
Sbjct: 356 TTIIESSLNVLE---------------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 357 EQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAI--------EDRSGRH 408
           + +V  +  +L      HK  L  + P        +  TI + +I        E+    H
Sbjct: 401 KSDVMVVVNKL------HKYSLVEKQP--------KESTISIPSIYLELKVKLENEYALH 446

Query: 409 RML--KYTPEHMHCLATFWGPLAPPQTGVV--------AVQNLSNNQASFRIAATAVVLE 458
           R +   Y              + P                         FR     V L+
Sbjct: 447 RSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLD 499

Query: 459 FNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLE 494
           F     +++KI+           +  I +     L+
Sbjct: 500 FRF---LEQKIRHDSTAW---NASGSILNTLQ-QLK 528
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query727
1wb1_A482 Translation elongation factor SELB; selenocysteine 99.8
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Back     alignment and structure
Probab=99.80  E-value=3.6e-20  Score=201.84  Aligned_cols=217  Identities=14%  Similarity=0.130  Sum_probs=150.9

Q ss_pred             hcCCCCCcEEEEEEeecChhhhhccCCCCceeEeeeccccceeeEEEEEEEecCcccccccccCCcEEEEeeeeeeeeee
Q 004847          318 LEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIP  397 (727)
Q Consensus       318 ~eG~~~G~YVrI~I~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvvq~rikRhrw~~~kiLKSkDpLifsiGwRRFqt~P  397 (727)
                      +..+.+|+.|.|.+.++..+.+..   ..-| ++.-.+. .-..-+.+++.--.. ++.+|++..++.|++|..+-.+..
T Consensus       253 v~~a~~G~~v~~~l~~~~~~~i~~---Gdvl-~~~~~~~-~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v  326 (482)
T 1wb1_A          253 VMEAKAGDRVGMAIQGVDAKQIYR---GXIL-TSKDTKL-QTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVA  326 (482)
T ss_dssp             BCCCCSSCCCCEECSSCCSSCCCS---SCBC-CCTTCCC-CCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEE
T ss_pred             eeEecCCCEEEEEecCCCHhhccc---cceE-ecCCCCC-ceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEE
Confidence            445678888888887764432211   1111 0100000 011122222221122 357999999999999999988765


Q ss_pred             eeee---ccCCccceeeeecCCC--ceEEEEEEeecCCCCccEEEEEecCCCCCCeEEEEEEEEecccCCeeEEEeEEEe
Q 004847          398 VYAI---EDRSGRHRMLKYTPEH--MHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLV  472 (727)
Q Consensus       398 IyS~---~d~n~R~R~lKYtpeh--m~c~ATfyGPit~p~tgvlafq~~s~~~~~frI~ATG~Vl~~D~~~~IvKKikLt  472 (727)
                      ..-.   -|.++.+..-++...+  ..|...+-.|+++.+-+-++++...+.....|.+|.|.|+++.+    +++++|.
T Consensus       327 ~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~~~----~~~l~v~  402 (482)
T 1wb1_A          327 VPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRIXGHGLIEEFKP----IKDLNIK  402 (482)
T ss_dssp             EEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCCCCBCCEEECCC----GGGSCCC
T ss_pred             EEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceEeeEEEEEeccc----chhceee
Confidence            4432   2333333333344333  46777788999887665556665221122468999999999877    5666665


Q ss_pred             eeeeE-----EeecceEEeccCCChhhhccccCCeeEeccCc-cceeeccchhcccCCCCCCCCCCCceeEEeeeccccc
Q 004847          473 GYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI-RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRIL  546 (727)
Q Consensus       473 G~P~K-----I~K~TAfIk~MF~s~lEV~kFkga~LrTksGi-RG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl  546 (727)
                      ..+.|     ++++||+|++||++..+|+||.|.+|+|++|. +|+|+.++              |++|+|||+|+++|.
T Consensus       403 k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~f--------------g~~G~~~~~f~~~~~  468 (482)
T 1wb1_A          403 KEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTF--------------GTKGLLTAEFSGNVE  468 (482)
T ss_dssp             CCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCB--------------TTTTBBCCCBSSCCC
T ss_pred             ehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccC--------------CCCceEEEEecCCCC
Confidence            55555     78899999999999999999999999999999 99999999              799999999999999


Q ss_pred             ccCEEEEecccc
Q 004847          547 MSDIVFMRGWAD  558 (727)
Q Consensus       547 ~sDiVfLrlw~r  558 (727)
                      +||+|||++|+|
T Consensus       469 ~~d~v~~~~~~~  480 (482)
T 1wb1_A          469 NRDKVILNRLRR  480 (482)
T ss_dssp             SSCEEEEECCCS
T ss_pred             CCCeeeeehhhc
Confidence            999999999986

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query727
d1wb1a279 Elongation factor SelB, domains 2 and 4 {Methanoco 95.12
>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.12  E-value=0.0097  Score=49.03  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=62.7

Q ss_pred             eeEEeecceEEeccCCChhhhccccCCeeEeccC-ccceeeccchhcccCCCCCCCCCCCceeEEeeecccccccCEEEE
Q 004847          475 PCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSG-IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM  553 (727)
Q Consensus       475 P~KI~K~TAfIk~MF~s~lEV~kFkga~LrTksG-iRG~IKkaL~~~~g~~~~~~~~~GthG~FRatFedkIl~sDiVfL  553 (727)
                      -.||-|..++|-++=.|..-..+-.|-++++.++ |.|.||-..              ||.|+.-|-|++.+...|.|.|
T Consensus         7 ~i~i~K~r~~IegLA~sK~~aEkLIGe~v~i~~k~i~Gkik~Tf--------------GTkG~l~adF~geV~n~dkV~L   72 (79)
T d1wb1a2           7 KVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTF--------------GTKGLLTAEFSGNVENRDKVIL   72 (79)
T ss_dssp             EEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCB--------------TTTTBBCCCBSSCCCSSCEEEE
T ss_pred             cEEEecCcEEeeecccchhHHHhhcCcEEEecCCceEEEEeccc--------------cCceEEEEEeccccCCCceehh
Confidence            4688999999999999999999999999999999 999999988              7999999999999999999998


Q ss_pred             e
Q 004847          554 R  554 (727)
Q Consensus       554 r  554 (727)
                      .
T Consensus        73 ~   73 (79)
T d1wb1a2          73 N   73 (79)
T ss_dssp             E
T ss_pred             h
Confidence            6