Citrus Sinensis ID: 004858

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------
MSNHNDPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQKKLKEQLIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSLGSIKATPHSRPIKKIDRTLQHDPSNLHLDDGCATESAGRRGLDIPGEPKKKQSSDASEQDSPMKRRPFSAINSTTSSNDVNPNGETVQKPDPPFDLSFTTPSNTNSFIDDENMTPKSMPIPVPPTPPTISVPMQTTTTTPAPADAPIPFNVYQVVETAEGIDEYSFEERRAGFVLPEIHSKPSIQV
ccccccccHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccEEEcccccccccccccccccccccccccccccEEEEEcHHHHEEEEEcccccccccccc
msnhndpflqeettsgslIEQLQIIWDEvgetdtdkDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSamaeppvhnrqsdqtagNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTiyissktvvdetglSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKltvsqihpsfgnsegsrsisdDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICrknhmvpendssmEYTLEAIesgttdpaNVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEEswledynrdenrynagrgsHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQKKLKEQLIAEQEalygskpsplkaqsvkkvprvssggannrrlpvggtmlqtpkpdslgsikatphsrpikkidrtlqhdpsnlhlddgcatesagrrgldipgepkkkqssdaseqdspmkrrpfsainsttssndvnpngetvqkpdppfdlsfttpsntnsfiddenmtpksmpipvpptpptisvpmqtttttpapadapipfnvYQVVETaegideysfeerragfvlpeihskpsiqv
msnhndpflqeettsgsliEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVhnrqsdqtagnlkEELRNILPQLEEMrkrksdrkEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPsfgnsegsrsisDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREIterntlsvdfIDHVEAEVTrleelksskmkelVLKKQSELEeicrknhmvpendssMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLAsktiaweteRGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQKKLKEQLIAEqealygskpsplkaqsvkkvprvssggannrrlpvggtmlqtpkpdslgsikatphsrpIKKIdrtlqhdpsnlhLDDGCATESagrrgldipgepkkkqssdaseqdspmkrrpfsainsttssndvnpngETVQKPDPPFDLSFTTPSNTNSFIDDENMTPKSMPIPVPPTPPTISVPMQTTTTTPAPADAPIPFNVYQVVETAEGIDEYSFEErragfvlpeihskpsiqv
MSNHNDPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTIlrqekeqerrrqrdqkklkeqlIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSLGSIKATPHSRPIKKIDRTLQHDPSNLHLDDGCATESAGRRGLDIPGEPKKKQSSDASEQDSPMKRRPFSAINSTTSSNDVNPNGETVQKPDPPFDLSFTTPSNTNSFIDDENMTPKsmpipvpptpptisvpmqtttttpapadapipFNVYQVVETAEGIDEYSFEERRAGFVLPEIHSKPSIQV
*****************LIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSA******************************************FVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLE**********************HLNTLNSFCSVLGMDFKLTVSQIH******************QLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVT******************************************************VLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTIL*************************************************************************************************************************************************************************************************************************PIPFNVYQVVETAEGIDEYSFEERRAGFVL***********
******P****ETTSGSLIEQLQIIWDEVGETDTDKDKM**ELEQECLQVYRRKVDE******************************************LKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMI****************************EFHRELHE******D*MKQVQDHLNTLNSFCSVLGM*********************I*DDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIE*****************************IDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHM***********LEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESW***************************************T*ASKTIAWETERGVEFLYDGVRLHSML*******************************************************************************************************************************************************************************************************************************************************RAGFVLPEIHS******
**************SGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEP***********GNLKEELRNILPQLEEM**********FVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHEL***********QDHLNTLNSFCSVLGMDFKLTVSQIHPSFG********SDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQE**************KEQLIAEQEALYGSKP****************GGANNRRLPVGGTMLQTPKPDSLGSIKATPHSRPIKKIDRTLQHDPSNLHLDDGCATESAGRRGLDIP*******************RRPFSAINSTTSSNDVNPNGETVQKPDPPFDLSFTTPSNTNSFIDDENMTPKSMPIPVPPTPPTISVPMQTTTTTPAPADAPIPFNVYQVVETAEGIDEYSFEERRAGFVLPEIHSKPSIQV
***********ETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNR****TAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRS*****SKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQKKLKEQLIAEQEALYG***************************************************************************************************************************************************S****ENMTPKSMPIPVPPTPPTISVPMQTTTTTPAPADAPIPFNVYQVVETAEGIDEYSFEERRAGFVLPEIHSKP*I**
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MSNHNDPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKxxxxxxxxxxxxxxxxxxxxxLAAICSAMAEPPVHNRQSDQTAGNLxxxxxxxxxxxxxxxxxxxxxKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKxxxxxxxxxxxxxxxxxxxxxVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFxxxxxxxxxxxxxxxxxxxxxLVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSLGSIKATPHSRPIKKIDRTLQHDPSNLHLDDGCATESAGRRGLDIPGEPKKKQSSDASEQDSPMKRRPFSAINSTTSSNDVNPNGETVQKPDPPFDLSFTTPSNTNSFIDDENMTPKSMPIPVPPTPPTISVPMQTTTTTPAPADAPIPFNVYQVVETAEGIDEYSFEERRAGFVLPEIHSKPSIQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query727 2.2.26 [Sep-21-2011]
Q9FHM4707 65-kDa microtubule-associ yes no 0.936 0.963 0.594 0.0
Q9LZY0677 65-kDa microtubule-associ no no 0.924 0.992 0.486 1e-170
Q4PSA3549 65-kDa microtubule-associ no no 0.733 0.970 0.570 1e-154
Q8LEG3578 65-kDa microtubule-associ no no 0.740 0.930 0.488 1e-141
Q9FLP0587 65-kDa microtubule-associ no no 0.708 0.877 0.499 1e-138
Q8L836603 65-kDa microtubule-associ no no 0.702 0.847 0.464 1e-134
Q9SIS3608 65-kDa microtubule-associ no no 0.762 0.911 0.443 1e-130
Q9ZVJ3550 65-kDa microtubule-associ no no 0.698 0.923 0.427 1e-114
Q9C7G0562 65-kDa microtubule-associ no no 0.700 0.905 0.403 1e-104
Q99K43603 Protein regulator of cyto yes no 0.737 0.888 0.241 4e-18
>sp|Q9FHM4|MA653_ARATH 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1 Back     alignment and function desciption
 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/732 (59%), Positives = 536/732 (73%), Gaps = 51/732 (6%)

Query: 2   SNHNDPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRC 61
           S   DP LQ ETT GSL+ +LQIIWDEVGET+TD+D+MLLELE+ECL+VYRRKVD+ANRC
Sbjct: 3   SVQKDPILQVETTCGSLLFELQIIWDEVGETETDRDQMLLELERECLEVYRRKVDQANRC 62

Query: 62  RAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDR 121
           RA LRQ IAD EA+LAAICSAM E PVH RQSDQ+ G+LK+EL  ILP+LEEM+KRK +R
Sbjct: 63  RAQLRQAIADAEAQLAAICSAMGERPVHIRQSDQSVGSLKQELGRILPELEEMQKRKVER 122

Query: 122 KEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMK 181
           + QF+ V+EQI  I N+I      + S+ ++DET LS+RKLEE H +L  LQKEK DR++
Sbjct: 123 RNQFIVVMEQIDSITNDIKGQGELVHSEPLIDETNLSMRKLEELHCQLQVLQKEKIDRVE 182

Query: 182 QVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKI 241
            ++ HL TL S CSVLGMDF   V Q++P+  + EG RS+SD TIE+L  A+QKL EVKI
Sbjct: 183 TIRKHLCTLYSHCSVLGMDFNEVVGQVNPTLSDPEGPRSLSDHTIEKLGAAVQKLMEVKI 242

Query: 242 QRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEA 301
           QRMQ+LQDLATTMLELWNLMDTPIEEQQ +Q++TCNIAASE EITE N+LS DFI +VEA
Sbjct: 243 QRMQRLQDLATTMLELWNLMDTPIEEQQEYQHITCNIAASEHEITEANSLSEDFIKYVEA 302

Query: 302 EVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLE 361
           EV RL+E+K+SKMKELVLKK+SELEEICRK H++P +DS+++ T+ AIESG  D   VLE
Sbjct: 303 EVVRLDEVKASKMKELVLKKRSELEEICRKTHLLPVSDSAIDQTIVAIESGIVDATMVLE 362

Query: 362 QIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAE 421
            +E  I+K KEEA SRK+ILE+++KWL+AC+EESWLE+YNRD+NRYNAGRG+HL LKRAE
Sbjct: 363 HLEQHISKIKEEALSRKEILERVEKWLSACDEESWLEEYNRDDNRYNAGRGAHLTLKRAE 422

Query: 422 KARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQR 481
           KAR+LV KLPGMVE LASKTI WE E G+EFLYDG+RL SML+EY ILRQE+E+E RRQR
Sbjct: 423 KARNLVTKLPGMVEALASKTIVWEQENGIEFLYDGIRLLSMLEEYNILRQEREEEHRRQR 482

Query: 482 DQKKLKEQLIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSL 541
           DQKKL+ QLIAEQEALYGSKPSP K    KK PR+S+GGA+NRRL +G  M QTPKP+  
Sbjct: 483 DQKKLQGQLIAEQEALYGSKPSPSKPLGGKKAPRMSTGGASNRRLSLGAAMHQTPKPN-- 540

Query: 542 GSIKATPHSRPIKKIDRTLQHDPSNLHLDDGCATESAGRRGLDIPGEPKKKQSSDASEQ- 600
                       KK D   +H+   L         S GRRGLDI G P +KQS + SE  
Sbjct: 541 ------------KKADH--RHNDGAL---------SNGRRGLDIAGLPSRKQSMNPSEML 577

Query: 601 DSPMKRRPFSAINSTTSSNDVNPNGETVQ---KPDPPFDL-SFTTPSNTNSFIDD----- 651
            SP+ R+PFS I++T  ++  N    T Q   K +   ++ SF TP   N+ + +     
Sbjct: 578 QSPLVRKPFSPISTTVVASKANIATTTTQQLPKNNAVNEISSFATPIKNNNILRNLEEEK 637

Query: 652 ----ENMTPKSMP--IPVPPTPPTISVPMQTTTTTPAPADAPIPF-NVYQVVETAEGIDE 704
                  TPK++   IP+P TP T+SVPM T         AP PF N  +++     + E
Sbjct: 638 MMTMMMQTPKNVAAMIPIPSTPATVSVPMHT---------APTPFTNNARLMSEKPEVVE 688

Query: 705 YSFEERRAGFVL 716
           YSFEERR  F+L
Sbjct: 689 YSFEERRLAFML 700
Microtubule-associated protein that plays a critical role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs. Essential for the cytokinesis, especially in roots, by maintaining the integrity of the overlapped microtubules in the phragmoplast. Required during root morphogenesis. Needed for giant cell development during root knot nematode infection, where cytokinesis is initiated but not completed.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LZY0|MA654_ARATH 65-kDa microtubule-associated protein 4 OS=Arabidopsis thaliana GN=MAP65-4 PE=1 SV=2 Back     alignment and function description
>sp|Q4PSA3|MA659_ARATH 65-kDa microtubule-associated protein 9 OS=Arabidopsis thaliana GN=MAP65-9 PE=2 SV=1 Back     alignment and function description
>sp|Q8LEG3|MA652_ARATH 65-kDa microtubule-associated protein 2 OS=Arabidopsis thaliana GN=MAP65-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FLP0|MA651_ARATH 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana GN=MAP65-1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L836|MA657_ARATH 65-kDa microtubule-associated protein 7 OS=Arabidopsis thaliana GN=MAP65-7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIS3|MA656_ARATH 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVJ3|MA655_ARATH 65-kDa microtubule-associated protein 5 OS=Arabidopsis thaliana GN=MAP65-5 PE=1 SV=2 Back     alignment and function description
>sp|Q9C7G0|MA658_ARATH 65-kDa microtubule-associated protein 8 OS=Arabidopsis thaliana GN=MAP65-8 PE=1 SV=2 Back     alignment and function description
>sp|Q99K43|PRC1_MOUSE Protein regulator of cytokinesis 1 OS=Mus musculus GN=Prc1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query727
255544435724 Protein regulator of cytokinesis, putati 0.976 0.980 0.700 0.0
225455563730 PREDICTED: 65-kDa microtubule-associated 0.986 0.982 0.694 0.0
356535319729 PREDICTED: 65-kDa microtubule-associated 0.969 0.967 0.645 0.0
356574793735 PREDICTED: 65-kDa microtubule-associated 0.920 0.910 0.649 0.0
113205145722 Putative microtubule-associated protein, 0.966 0.973 0.622 0.0
357504085729 Protein regulator of cytokinesis [Medica 0.965 0.962 0.631 0.0
449451813725 PREDICTED: 65-kDa microtubule-associated 0.975 0.977 0.615 0.0
449488604725 PREDICTED: LOW QUALITY PROTEIN: 65-kDa m 0.975 0.977 0.613 0.0
147801443 1029 hypothetical protein VITISV_039795 [Viti 0.920 0.650 0.652 0.0
356529347699 PREDICTED: 65-kDa microtubule-associated 0.942 0.979 0.603 0.0
>gi|255544435|ref|XP_002513279.1| Protein regulator of cytokinesis, putative [Ricinus communis] gi|223547653|gb|EEF49147.1| Protein regulator of cytokinesis, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/732 (70%), Positives = 587/732 (80%), Gaps = 22/732 (3%)

Query: 5   NDPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAH 64
           NDP LQ ETT G+L+ +LQIIWDEVGETD ++DKMLLELEQECL+VYRRKVD+ANR RA 
Sbjct: 6   NDPLLQVETTCGTLLYELQIIWDEVGETDKERDKMLLELEQECLEVYRRKVDQANRNRAQ 65

Query: 65  LRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQ 124
           LRQ IAD EAELAAICSAM E PVH RQ+DQ AG+LKEELR ILPQLEEM KRKSDR+ Q
Sbjct: 66  LRQAIADSEAELAAICSAMGERPVHIRQADQNAGSLKEELRKILPQLEEMGKRKSDRRNQ 125

Query: 125 FVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQ 184
           F++VLE+I+ I  EIY S  +      +DET LSLRKLEE HR+LH LQKEKSDR+KQVQ
Sbjct: 126 FLEVLEEIKEISYEIYGSADH---HFFIDETDLSLRKLEELHRQLHTLQKEKSDRLKQVQ 182

Query: 185 DHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRM 244
           +HL+TLNS CSVLGMDFK  ++++HPSFG++EGSR+IS   I+ L+TAI KLRE+K QRM
Sbjct: 183 EHLDTLNSLCSVLGMDFKNILTEVHPSFGDTEGSRNISTVLIQNLSTAIIKLREIKRQRM 242

Query: 245 QKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVT 304
           QKLQDLATTMLELW+LMDTPIEEQQMFQNVTCNIAASE EITE NTLSVDFI++VEAEV+
Sbjct: 243 QKLQDLATTMLELWHLMDTPIEEQQMFQNVTCNIAASEHEITEPNTLSVDFINYVEAEVS 302

Query: 305 RLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIE 364
           RLEELKSSKMK+LVLKK+SELEEICRK HMVPE D+++EY ++AIE G  DPA+VLEQIE
Sbjct: 303 RLEELKSSKMKDLVLKKRSELEEICRKTHMVPEADTAIEYAIDAIEFGNVDPASVLEQIE 362

Query: 365 LQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKAR 424
           LQI   KEEAFSRK+ILEK++KWL ACEEE WLE+YNRDENRYNAG+G+HL LKRAEKAR
Sbjct: 363 LQIGNVKEEAFSRKEILEKVEKWLTACEEECWLEEYNRDENRYNAGKGAHLTLKRAEKAR 422

Query: 425 SLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQK 484
           +LVNKLPG VE LASKT+AWE ERG+EFLYDG+RL SML+EYTILRQEKE+ERRRQRDQK
Sbjct: 423 ALVNKLPGTVEALASKTMAWEKERGIEFLYDGIRLLSMLEEYTILRQEKEEERRRQRDQK 482

Query: 485 KLKEQLIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSLGSI 544
           KL+ QLIAEQEALYGSKPSP K Q VKK  RVS+GGA+NRRL +GG ML  PK D   S 
Sbjct: 483 KLQGQLIAEQEALYGSKPSPSKTQCVKKASRVSTGGASNRRLSLGGAMLPAPKLDLSNSS 542

Query: 545 KATPHSRPIKKIDRTLQHDPSNLHLDDGCATESAGRRGLDIPGEPKKKQ---SSDASEQD 601
           KAT HSRP KK+DR  QHDP N   DDG A  SAGRRGLDI G P KK    + +A E +
Sbjct: 543 KATTHSRPGKKLDRMHQHDPLNHRQDDGFAALSAGRRGLDIAGLPAKKHPFSTVNAHEPE 602

Query: 602 SPMKRRPFSAINSTTSSN-----DV-NPNGETVQKPDPPFDLSFTTPSNTNSFIDDENMT 655
           SPM R+PFS I+ST SS      DV   +GET++K      +  TTPS T +  D+EN T
Sbjct: 603 SPMLRKPFSPISSTGSSKANILEDVTTAHGETIKK------IVTTTPSKT-TMADEENWT 655

Query: 656 PKSMPIPVPPTPPTISVPMQTTTTTPAPADAPIPFNVYQVVETAEGIDEYSFEERRAGFV 715
           PK+MPIPVP TP T+SVPMQT  T   P   P+P+      E      EYSFEERRAGFV
Sbjct: 656 PKTMPIPVPTTPSTLSVPMQTAITPAHP--VPVPYGGATPKEEVPEEVEYSFEERRAGFV 713

Query: 716 LPEIHSKPSIQV 727
           LP  H K SIQV
Sbjct: 714 LPRTHIK-SIQV 724

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455563|ref|XP_002267584.1| PREDICTED: 65-kDa microtubule-associated protein 3 [Vitis vinifera] gi|296084125|emb|CBI24513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535319|ref|XP_003536194.1| PREDICTED: 65-kDa microtubule-associated protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356574793|ref|XP_003555529.1| PREDICTED: 65-kDa microtubule-associated protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|113205145|gb|AAT40494.2| Putative microtubule-associated protein, identical [Solanum demissum] Back     alignment and taxonomy information
>gi|357504085|ref|XP_003622331.1| Protein regulator of cytokinesis [Medicago truncatula] gi|355497346|gb|AES78549.1| Protein regulator of cytokinesis [Medicago truncatula] Back     alignment and taxonomy information
>gi|449451813|ref|XP_004143655.1| PREDICTED: 65-kDa microtubule-associated protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488604|ref|XP_004158108.1| PREDICTED: LOW QUALITY PROTEIN: 65-kDa microtubule-associated protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147801443|emb|CAN77019.1| hypothetical protein VITISV_039795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356529347|ref|XP_003533256.1| PREDICTED: 65-kDa microtubule-associated protein 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query727
TAIR|locus:2153152707 PLE "AT5G51600" [Arabidopsis t 0.740 0.760 0.654 9.4e-200
TAIR|locus:2167978549 MAP65-9 "microtubule-associate 0.733 0.970 0.543 1.7e-146
TAIR|locus:2116267578 MAP65-2 "AT4G26760" [Arabidops 0.740 0.930 0.464 4.9e-124
TAIR|locus:2059713608 ATMAP65-6 [Arabidopsis thalian 0.762 0.911 0.427 8.5e-120
TAIR|locus:2006737603 MAP65-7 "AT1G14690" [Arabidops 0.744 0.897 0.428 1.3e-116
MGI|MGI:1858961603 Prc1 "protein regulator of cyt 0.370 0.446 0.217 3.8e-19
UNIPROTKB|H9KV59606 PRC1 "Protein regulator of cyt 0.389 0.466 0.228 3.8e-19
UNIPROTKB|F8W9B5566 PRC1 "Protein regulator of cyt 0.389 0.5 0.228 5e-19
UNIPROTKB|O43663620 PRC1 "Protein regulator of cyt 0.389 0.456 0.228 6.6e-19
ZFIN|ZDB-GENE-040426-777606 prc1b "protein regulator of cy 0.382 0.458 0.243 4.9e-18
TAIR|locus:2153152 PLE "AT5G51600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1797 (637.6 bits), Expect = 9.4e-200, Sum P(2) = 9.4e-200
 Identities = 352/538 (65%), Positives = 425/538 (78%)

Query:     2 SNHNDPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRC 61
             S   DP LQ ETT GSL+ +LQIIWDEVGET+TD+D+MLLELE+ECL+VYRRKVD+ANRC
Sbjct:     3 SVQKDPILQVETTCGSLLFELQIIWDEVGETETDRDQMLLELERECLEVYRRKVDQANRC 62

Query:    62 RAHLRQTIADYEAELAAICSAMAEPPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDR 121
             RA LRQ IAD EA+LAAICSAM E PVH RQSDQ+ G+LK+EL  ILP+LEEM+KRK +R
Sbjct:    63 RAQLRQAIADAEAQLAAICSAMGERPVHIRQSDQSVGSLKQELGRILPELEEMQKRKVER 122

Query:   122 KEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMK 181
             + QF+ V+EQI  I N+I      + S+ ++DET LS+RKLEE H +L  LQKEK DR++
Sbjct:   123 RNQFIVVMEQIDSITNDIKGQGELVHSEPLIDETNLSMRKLEELHCQLQVLQKEKIDRVE 182

Query:   182 QVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKI 241
              ++ HL TL S CSVLGMDF   V Q++P+  + EG RS+SD TIE+L  A+QKL EVKI
Sbjct:   183 TIRKHLCTLYSHCSVLGMDFNEVVGQVNPTLSDPEGPRSLSDHTIEKLGAAVQKLMEVKI 242

Query:   242 QRMQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEA 301
             QRMQ+LQDLATTMLELWNLMDTPIEEQQ +Q++TCNIAASE EITE N+LS DFI +VEA
Sbjct:   243 QRMQRLQDLATTMLELWNLMDTPIEEQQEYQHITCNIAASEHEITEANSLSEDFIKYVEA 302

Query:   302 EVTRLEELKSSKMKELVLKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLE 361
             EV RL+E+K+SKMKELVLKK+SELEEICRK H++P +DS+++ T+ AIESG  D   VLE
Sbjct:   303 EVVRLDEVKASKMKELVLKKRSELEEICRKTHLLPVSDSAIDQTIVAIESGIVDATMVLE 362

Query:   362 QIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAE 421
              +E  I+K KEEA SRK+ILE+++KWL+AC+EESWLE+YNRD+NRYNAGRG+HL LKRAE
Sbjct:   363 HLEQHISKIKEEALSRKEILERVEKWLSACDEESWLEEYNRDDNRYNAGRGAHLTLKRAE 422

Query:   422 KARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTIXXXXXXXXXXXXX 481
             KAR+LV KLPGMVE LASKTI WE E G+EFLYDG+RL SML+EY I             
Sbjct:   423 KARNLVTKLPGMVEALASKTIVWEQENGIEFLYDGIRLLSMLEEYNILRQEREEEHRRQR 482

Query:   482 XXXXXXXXXIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPD 539
                      IAEQEALYGSKPSP K    KK PR+S+GGA+NRRL +G  M QTPKP+
Sbjct:   483 DQKKLQGQLIAEQEALYGSKPSPSKPLGGKKAPRMSTGGASNRRLSLGAAMHQTPKPN 540
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA;IMP
GO:0005874 "microtubule" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP
GO:0000280 "nuclear division" evidence=RCA;IMP
GO:0009624 "response to nematode" evidence=RCA;IMP
GO:0052096 "formation by symbiont of syncytium involving giant cell for nutrient acquisition from host" evidence=IMP
GO:0008017 "microtubule binding" evidence=IDA
GO:0009574 "preprophase band" evidence=IDA
GO:0046785 "microtubule polymerization" evidence=IDA
GO:0055028 "cortical microtubule" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0007000 "nucleolus organization" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051258 "protein polymerization" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2167978 MAP65-9 "microtubule-associated protein 65-9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116267 MAP65-2 "AT4G26760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059713 ATMAP65-6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006737 MAP65-7 "AT1G14690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1858961 Prc1 "protein regulator of cytokinesis 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|H9KV59 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W9B5 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O43663 PRC1 "Protein regulator of cytokinesis 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-777 prc1b "protein regulator of cytokinesis 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FHM4MA653_ARATHNo assigned EC number0.59420.93670.9632yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query727
pfam03999619 pfam03999, MAP65_ASE1, Microtubule associated prot 8e-77
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 0.004
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family) Back     alignment and domain information 
 Score =  258 bits (661), Expect = 8e-77
 Identities = 163/655 (24%), Positives = 261/655 (39%), Gaps = 63/655 (9%)

Query: 36  KDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAEPPVHNR---- 91
           ++  L +++       +   +E++  +  + + IA   AE+  + +        +     
Sbjct: 2   QNLNLADIKIHYSSFEKDLKEESSTKKQAILKDIAVLRAEIKRLSAENGIEQDISNSLLH 61

Query: 92  ------QSDQTAGNLKE------ELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEI 139
                  S++      +       L  +  QLE +RK+K++R+ +  ++L Q+  + NE+
Sbjct: 62  KEPLQLLSEKDILQRPKSFPLGVWLLKLRDQLESLRKQKAERRAEIKELLHQLLQLCNEL 121

Query: 140 YRSTIYISSKTVVDETGLSLRKLEEFHRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGM 199
               + +  K     +  +L +LE F   L EL++EK  R+++V     ++ S CS+LG 
Sbjct: 122 GEPPLSLLRKDADPLSLPNLEELEHFRERLGELREEKVRRLEEVDSLKQSIKSLCSLLGT 181

Query: 200 DFKLTV-SQIHPSFGNSEGSRSISDDTIEQLTTAIQKLREVKIQRMQKLQDLATTMLELW 258
               T   Q   S+G       ++ +TI++L   ++ L   K QR  K+ DL   + ELW
Sbjct: 182 PPARTDFEQDVLSYGEIPNDHCVTRETIDKLDKMLENLAAQKKQRADKIDDLREQIQELW 241

Query: 259 NLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELV 318
           N +    EEQ             +R + E   LS + I  +E EV RLE LK   +K+ +
Sbjct: 242 NRLQISDEEQ-------------KRFVREATILSQESIKRLEEEVERLEALKKQNLKKFI 288

Query: 319 LKKQSELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRK 378
              + E++E+        E   S  +T    E  T     +LEQ E +I + KEE  S K
Sbjct: 289 EDLRIEIQELWDLLFYSEEQRKS--FTPYYEELYTEQ---LLEQHENEIKRLKEEYSSNK 343

Query: 379 DILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLA 438
           +ILE I+KW +  E    LE    D NR+N  RG HL LK  ++ + L  KLP + E L 
Sbjct: 344 EILELIEKWESLWERMEELEAKANDPNRFN-NRGGHL-LKEEKERKRLTRKLPKVEEQLT 401

Query: 439 SKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQKKLKEQLIAEQEALY 498
           +K  AWE E G  FL  GV L   + +     +   QE++R + +KKL  +     E  Y
Sbjct: 402 AKVTAWEGEFGTPFLVHGVPLLERMAQIEAQWERHRQEKQRAKARKKLANKTSTVMEPPY 461

Query: 499 GSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSLGSIKATPHSRPIKKIDR 558
           GS  S     S     R      +N         L         S +A+     I K   
Sbjct: 462 GSTESS--VPSTPSTRRNDRNITSNTPSLKRTPNLTKS----SLSQEAS----LISKSTG 511

Query: 559 TLQHDPSNLHLDDGCATESAGRRGLDIPGEPKKKQSSDASEQDSPMKRRPFSAINSTTSS 618
                 +   L       +A R              S A+   S     P S INS +  
Sbjct: 512 NTHKHSTPRRLTTLPKLPAASR------SSKGNLIRSGANGNASSDLSSPGS-INSKS-- 562

Query: 619 NDVNPNGETVQKPDPPFDLSFTTPSNTNSFIDDENMTPKSMPIP-VPPTPPTISV 672
                  E        FD+     +             K   +   P +PP  SV
Sbjct: 563 ------PEHSVPLVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPKESV 611

Length = 619
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 727
KOG4302660 consensus Microtubule-associated protein essential 100.0
PF03999619 MAP65_ASE1: Microtubule associated protein (MAP65/ 100.0
KOG4302660 consensus Microtubule-associated protein essential 99.94
PF03999619 MAP65_ASE1: Microtubule associated protein (MAP65/ 99.91
PRK02224880 chromosome segregation protein; Provisional 96.7
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 96.36
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.23
PHA02562562 46 endonuclease subunit; Provisional 95.12
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.12
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 94.78
COG11961163 Smc Chromosome segregation ATPases [Cell division 94.6
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 94.39
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 94.35
PRK11637428 AmiB activator; Provisional 92.87
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 92.51
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.05
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 91.66
KOG09961293 consensus Structural maintenance of chromosome pro 91.58
KOG0964 1200 consensus Structural maintenance of chromosome pro 91.42
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.38
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 91.38
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 91.2
PRK11637428 AmiB activator; Provisional 90.95
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 90.74
PF00038312 Filament: Intermediate filament protein; InterPro: 90.72
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 90.64
KOG0971 1243 consensus Microtubule-associated protein dynactin 90.46
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 90.46
COG11961163 Smc Chromosome segregation ATPases [Cell division 90.14
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 90.06
KOG0977546 consensus Nuclear envelope protein lamin, intermed 89.81
PF00038312 Filament: Intermediate filament protein; InterPro: 89.74
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 89.18
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 88.37
PF03915424 AIP3: Actin interacting protein 3; InterPro: IPR02 87.89
PF135141111 AAA_27: AAA domain 87.83
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 87.79
KOG09331174 consensus Structural maintenance of chromosome pro 87.43
PRK09039343 hypothetical protein; Validated 86.98
PRK02224880 chromosome segregation protein; Provisional 86.37
KOG10291118 consensus Endocytic adaptor protein intersectin [S 86.19
cd08915342 V_Alix_like Protein-interacting V-domain of mammal 86.02
cd09234337 V_HD-PTP_like Protein-interacting V-domain of mamm 85.54
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 84.09
PRK04863 1486 mukB cell division protein MukB; Provisional 84.02
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 83.76
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 83.56
PRK04778569 septation ring formation regulator EzrA; Provision 83.46
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 83.24
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 83.05
PRK10869553 recombination and repair protein; Provisional 82.66
cd09236353 V_AnPalA_UmRIM20_like Protein-interacting V-domain 82.64
TIGR00634563 recN DNA repair protein RecN. All proteins in this 82.5
COG4942420 Membrane-bound metallopeptidase [Cell division and 82.4
PLN031881320 kinesin-12 family protein; Provisional 82.23
PF135141111 AAA_27: AAA domain 82.11
PRK04778569 septation ring formation regulator EzrA; Provision 81.69
cd09234337 V_HD-PTP_like Protein-interacting V-domain of mamm 81.55
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 81.55
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 81.31
PHA02562562 46 endonuclease subunit; Provisional 80.78
COG4477570 EzrA Negative regulator of septation ring formatio 80.54
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-107  Score=916.35  Aligned_cols=639  Identities=46%  Similarity=0.663  Sum_probs=543.9

Q ss_pred             CCcchhhhhHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004858            6 DPFLQEETTSGSLIEQLQIIWDEVGETDTDKDKMLLELEQECLQVYRRKVDEANRCRAHLRQTIADYEAELAAICSAMAE   85 (727)
Q Consensus         6 ~~~~~~~~~c~s~L~eLq~IWdEIG~~e~eRd~ml~elEqe~l~vyr~kVde~~~~k~~L~qsIa~~~~EL~~L~~eLGe   85 (727)
                      .+.++..+||+.++.+|+.|||+||+++++|++++..|++||+++|+++|+++...+++|+++|+++++|+.+||++||+
T Consensus         7 ~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~   86 (660)
T KOG4302|consen    7 EVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGE   86 (660)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            66778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHH
Q 004858           86 PPVHNRQSDQTAGNLKEELRNILPQLEEMRKRKSDRKEQFVQVLEQIQMIKNEIYRSTIYISSKTVVDETGLSLRKLEEF  165 (727)
Q Consensus        86 ~p~~~~~~d~~~~~LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd~~dLS~e~LeeL  165 (727)
                      +++...++++..++|+++|..+.+.|+.|+++|++|+++|.+++.||+.||.+|+|. .....+..+|..|||+++|++|
T Consensus        87 ~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~-~~~~~~~~~D~~dlsl~kLeel  165 (660)
T KOG4302|consen   87 PSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP-EDLPSFLIADESDLSLEKLEEL  165 (660)
T ss_pred             cccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCcccccCcccccHHHHHHH
Confidence            998877788889999999999999999999999999999999999999999999876 1112234678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004858          166 HRELHELQKEKSDRMKQVQDHLNTLNSFCSVLGMDFKLTVSQIHPSFGNSEG--SRSISDDTIEQLTTAIQKLREVKIQR  243 (727)
Q Consensus       166 ~~~L~~Lq~EK~~Rl~kv~el~~~I~~L~~~Lg~d~~~~v~ev~psl~e~~~--~~~LS~~tL~~L~~~l~~LeeeK~~R  243 (727)
                      +.+|.+|++||..|+++|.+++.+|+.||.+||++|...+..+||+|.+..+  +++||+++|++|..++..|+++|.+|
T Consensus       166 r~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr  245 (660)
T KOG4302|consen  166 REHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQR  245 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987665  79999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhhhccccchhhhhccCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 004858          244 MQKLQDLATTMLELWNLMDTPIEEQQMFQNVTCNIAASEREITERNTLSVDFIDHVEAEVTRLEELKSSKMKELVLKKQS  323 (727)
Q Consensus       244 ~~kl~~L~~~L~eLW~~L~ip~EEr~~F~~~~~~i~~S~~e~~~~~~LS~d~Ie~le~EV~RLeeLK~~~mkelI~k~R~  323 (727)
                      ++++++|+.+|.+|||+|++|+|||..|.+++      +++++.+++||.++|.+++.||.||++||+++||+||+++|.
T Consensus       246 ~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~  319 (660)
T KOG4302|consen  246 LQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRS  319 (660)
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999999975      789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcchhhhhhHHHHhhhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCC
Q 004858          324 ELEEICRKNHMVPENDSSMEYTLEAIESGTTDPANVLEQIELQIAKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRD  403 (727)
Q Consensus       324 ELeeLWdk~~~s~eeR~af~~~~~~i~sg~~d~eeLLe~~E~EI~rLke~~~srK~Ile~Vekw~~l~eE~~~LE~~~kD  403 (727)
                      ||++||+.+||+.+...+..|++.++++|..|..++|+.++.+|.++|+++.+||+|+++|++|+++|+++.|||+|++|
T Consensus       320 Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D  399 (660)
T KOG4302|consen  320 ELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRD  399 (660)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccch
Confidence            99999999999994333445667899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCchhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcCCeeEECCchHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004858          404 ENRYNAGRGSHLILKRAEKARSLVNKLPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQ  483 (727)
Q Consensus       404 pnR~~nrrGah~~LlrEEK~Rk~v~KLPklee~L~~~l~~WE~e~g~pFl~dG~~lLe~lee~~~~r~eKE~ek~r~R~~  483 (727)
                      .|||+++||+|++|+||||+|++|+|||+|++.|+.++.+||+++|++|+|||++|++|+++|..||++||++++|+|++
T Consensus       400 ~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~rd~  479 (660)
T KOG4302|consen  400 SNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQRDQ  479 (660)
T ss_pred             hhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCccccCccCCCCCCCCccccCccccCCCCCCCCCcccccCCCCccccccccccCC
Q 004858          484 KKLKEQLIAEQEALYGSKPSPLKAQSVKKVPRVSSGGANNRRLPVGGTMLQTPKPDSLGSIKATPHSRPIKKIDRTLQHD  563 (727)
Q Consensus       484 kK~q~q~~~e~e~~~Gs~psp~k~~~~~k~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (727)
                      ||+++|+..+++..|||+|||++|.+.||..+.+++  ++.+++.|++..+.+.....    ++.               
T Consensus       480 kk~s~q~~~~~~~~~~sk~sp~~p~s~rk~~~~~t~--~~~~~~~~ps~~~~s~~~~~----~s~---------------  538 (660)
T KOG4302|consen  480 KKTSGQLKPEQEGRYGSKPSPSKPNSPRKNRGRSTP--PNGSLSKTPSKRPLSGGNSA----AST---------------  538 (660)
T ss_pred             cccccccCccccccccCCCCCCCCCccccCCCCCCC--CCCCCCCCCccCcCCCCCCC----CCc---------------
Confidence            999999999999999999999999999998655433  22233332222211111110    000               


Q ss_pred             CCCCCCCCCCccccCCCCCCCCCCCCccCCCCCCc-ccCCCCcCCCCCccCCC-CCCCCCCCCCCCCCCCCCCCCCcccC
Q 004858          564 PSNLHLDDGCATESAGRRGLDIPGEPKKKQSSDAS-EQDSPMKRRPFSAINST-TSSNDVNPNGETVQKPDPPFDLSFTT  641 (727)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  641 (727)
                            ......+| +|+++..+..|..+...++. .+.|+...+++++.+.+ +-+..|+.++..............++
T Consensus       539 ------~~~~~~~s-~r~~~~~st~p~n~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~s~  611 (660)
T KOG4302|consen  539 ------QNRTTPLS-PRRLRASSTTPANKVARQKIESLNSNNSSPASSSLSTSQTHSQLNVEKSTIFLVPSDHETCSRSG  611 (660)
T ss_pred             ------ccCCCCCC-cccccCCCCCCchhhhcccccccccCCCCCccCCCCCCCCcccccccccccccccCcchhhccCC
Confidence                  00111122 27777778888877766666 35555445555555544 23444444444333333333333332


Q ss_pred             CCCCCCcC--ccccC-------CCCCCC--CCCCCCCCcccccccccccCCC
Q 004858          642 PSNTNSFI--DDENM-------TPKSMP--IPVPPTPPTISVPMQTTTTTPA  682 (727)
Q Consensus       642 ~~~~~~~~--~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  682 (727)
                        +++++.  -++-+       +|++..  .++|.+|..||++|.+++ ||.
T Consensus       612 --~~s~~~r~~~~~r~~~~~~~~~~~s~k~~~~~~~~~~ss~~~~~~p-~~~  660 (660)
T KOG4302|consen  612 --RSSTGTRNSEKKRLLSKSSSSPDTSGKLNSPPNEPEFSSYELSKSP-TFL  660 (660)
T ss_pred             --CCCccccchhhhcccchhccCCchhhhhcCCCCCccccccccccCC-CCC
Confidence              222222  11222       233222  567999999999999998 763

>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6 Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains Back     alignment and domain information
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query727
3nrx_A130 Protein regulator of cytokinesis 1; spectrin fold, 6e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A Length = 130 Back     alignment and structure
 Score =  130 bits (329), Expect = 6e-36
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 368 AKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLV 427
           A  K      K++ E + KW          E    D NR+   RG +L   + EK R+ +
Sbjct: 3   AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFT-NRGGNL--LKEEKQRAKL 59

Query: 428 NK-LPGMVETLASKTIAWETERGVEFLYDGVRLHSMLDEYTILRQEKEQERRRQRDQKKL 486
            K LP + E L ++   WE E    F+ +G +    + E     +    E+ R + +++L
Sbjct: 60  QKMLPKLEEELKARIELWEQEHSKAFMVNGQKFMEYVAEQ---WEMHRLEKERAKQERQL 116

Query: 487 KEQLIAEQEALYGS 500
           K +   E E LYGS
Sbjct: 117 KNKKQTETEMLYGS 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query727
3nrx_A130 Protein regulator of cytokinesis 1; spectrin fold, 100.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 93.33
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 92.35
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A Back     alignment and structure
Probab=100.00  E-value=2.4e-35  Score=275.27  Aligned_cols=126  Identities=29%  Similarity=0.465  Sum_probs=115.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHcCChhhhhcCCCCchhchHHHHHHHHhhh-hhHHHHHHHHHHHHHHH
Q 004858          368 AKAKEEAFSRKDILEKIDKWLAACEEESWLEDYNRDENRYNAGRGSHLILKRAEKARSLVNK-LPGMVETLASKTIAWET  446 (727)
Q Consensus       368 ~rLke~~~srK~Ile~Vekw~~l~eE~~~LE~~~kDpnR~~nrrGah~~LlrEEK~Rk~v~K-LPklee~L~~~l~~WE~  446 (727)
                      ++|+++|.+||+||++|++|..+|.++..||+|++|||||+||||   +|++|||+|++|+| ||+|+++|+++|.+||.
T Consensus         3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~~Rgg---~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~   79 (130)
T 3nrx_A            3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFTNRGG---NLLKEEKQRAKLQKMLPKLEEELKARIELWEQ   79 (130)
T ss_dssp             CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999998666   49999999999998 99999999999999999


Q ss_pred             HcCCeeEECCchHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004858          447 ERGVEFLYDGVRLHSML-DEYTILRQEKEQERRRQRDQKKLKEQLIAEQEALYGS  500 (727)
Q Consensus       447 e~g~pFl~dG~~lLe~l-ee~~~~r~eKE~ek~r~R~~kK~q~q~~~e~e~~~Gs  500 (727)
                      ++|.||+|||++|+++| ++|+.+|++||+||+| |++||.   +++|+||+|||
T Consensus        80 e~g~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs  130 (130)
T 3nrx_A           80 EHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS  130 (130)
T ss_dssp             HHTSCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred             HcCCeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence            99999999999999999 5699999999999998 999887   45999999997
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00